Citrus Sinensis ID: 000570
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | 2.2.26 [Sep-21-2011] | |||||||
| Q10251 | 1079 | Eukaryotic translation in | yes | no | 0.435 | 0.570 | 0.584 | 0.0 | |
| P39730 | 1002 | Eukaryotic translation in | yes | no | 0.416 | 0.588 | 0.558 | 0.0 | |
| O60841 | 1220 | Eukaryotic translation in | yes | no | 0.417 | 0.484 | 0.550 | 0.0 | |
| Q05D44 | 1216 | Eukaryotic translation in | yes | no | 0.417 | 0.486 | 0.550 | 0.0 | |
| B2GUV7 | 1216 | Eukaryotic translation in | yes | no | 0.417 | 0.486 | 0.550 | 0.0 | |
| Q5RDE1 | 1220 | Eukaryotic translation in | yes | no | 0.417 | 0.484 | 0.536 | 0.0 | |
| Q54XP6 | 1045 | Eukaryotic translation in | yes | no | 0.423 | 0.573 | 0.516 | 0.0 | |
| A8A8D3 | 609 | Probable translation init | yes | no | 0.401 | 0.932 | 0.410 | 1e-122 | |
| A3DMS0 | 606 | Probable translation init | yes | no | 0.404 | 0.945 | 0.406 | 1e-119 | |
| Q9Y9B3 | 617 | Probable translation init | yes | no | 0.406 | 0.931 | 0.395 | 1e-113 |
| >sp|Q10251|IF2P_SCHPO Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/636 (58%), Positives = 477/636 (75%), Gaps = 20/636 (3%)
Query: 795 DAVTRKKEPAAKSKEPEVDATPKQA-------EENLRSPICCIMGHVDTGKTKLLDCIRG 847
DAV + SK +VD P+ A E +LRSPICCI+GHVDTGKTKLLD +R
Sbjct: 447 DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVDTGKTKLLDNLRR 506
Query: 848 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK--VPGLLVIDTPGHESFTNLR 905
+NVQEGEAGGITQQIGATYFP E+I+++T+ + L+ +PGLL+IDTPGHESFTNLR
Sbjct: 507 SNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLIIDTPGHESFTNLR 566
Query: 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965
SRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T F+VALNKVDRLYGW + ++ I
Sbjct: 567 SRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVALNKVDRLYGWHSIKDNAIQ 626
Query: 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025
++ +Q +Q EF R+ I+ QL EQG+N LY++NK+ G ++VPTSA SGEG+PD
Sbjct: 627 DSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFENKNLGRYVSLVPTSAQSGEGVPD 686
Query: 1026 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1085
L+ LL+ TQ M +++ + L+CTVLEVKVIEG G TIDV+L NGVLHEGD+IV+CG+
Sbjct: 687 LVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLGATIDVILSNGVLHEGDRIVLCGM 746
Query: 1086 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145
GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G+KI A LE A+AG+ L VVGPD
Sbjct: 747 GGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMGVKICANDLEKAVAGSRLLVVGPD 806
Query: 1146 DDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIG 1205
DD ED+ EE MED+++++ RID SG GV VQASTLGSLEALLEFLK +KIPV+ ++IG
Sbjct: 807 DDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQ--MKIPVASVNIG 864
Query: 1206 PVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1265
PV+KKDVMR + MLEK KEYA +L FDVKV +A +LAE+LGVKIF A++IYHLFD FTA
Sbjct: 865 PVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTA 924
Query: 1266 YINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPIC----I 1321
+ + E+K+ E++D AVFPCVLK + FNK+DPI+LGVDVVEG+ ++ TPI +
Sbjct: 925 HQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGVDVVEGVLRINTPIVAVKQL 982
Query: 1322 PQRD--FIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVS 1379
P + I++GR+AS+E NHKPVD KKGQ A S Q +FGR D L S
Sbjct: 983 PNGEPQIIELGRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGRQVTESDALYS 1042
Query: 1380 HISRKSIDVLK-ANYRDDLSMDEWRLLVKLKNLFKI 1414
HI+R+SID LK +RD++S DEW+L+++LK LF I
Sbjct: 1043 HITRQSIDSLKDPAFRDEVSRDEWQLIIQLKKLFGI 1078
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN12 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/605 (55%), Positives = 448/605 (74%), Gaps = 15/605 (2%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 881
+LRSPICCI+GHVDTGKTKLLD IR TNVQ GEAGGITQQIGATYFP + I+ +T+ +
Sbjct: 402 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAE 461
Query: 882 --NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
T VPGLLVIDTPGHESF+NLRSRGS LC+IAILV+DIMHGLE QTIES+ LL+ R
Sbjct: 462 YEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQTIESIKLLRDR 521
Query: 940 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 999
F+VALNK+DRLY WK N + +Q+ VQ EF R +I +L EQG+N+EL
Sbjct: 522 KAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEEFQSRYSKIQLELAEQGLNSEL 581
Query: 1000 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIE 1059
Y++NK+ + +IVPTSA++GEG+PDLL LL++ TQK M ++L + + ++ T+LEVKV+E
Sbjct: 582 YFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVEATILEVKVVE 641
Query: 1060 GHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1119
G GTTIDV+L NG L EGD+IV+CG+ GPIVT IRALLTP P++ELR+K Y+HHK++KA
Sbjct: 642 GFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYVHHKEVKA 701
Query: 1120 AQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAST 1179
A G+KI A LE A++G+ L VVGP+DD +++ ++ M+D+ ++ +D +G+GV VQAST
Sbjct: 702 ALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMDDLTGLLDSVDTTGKGVVVQAST 761
Query: 1180 LGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEA 1239
LGSLEALL+FLK +KIPV I +GPV+K+DVM+AS MLEK EYA +L FDVKV EA
Sbjct: 762 LGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVMLCFDVKVDKEA 819
Query: 1240 RELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKK 1299
+ AE+ G+KIF AD+IYHLFD FTAY L EE++++ D A+FPCVL+ L + NK+
Sbjct: 820 EQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKR 877
Query: 1300 DPIVLGVDVVEGIAKVGTPIC-------IPQRDFIDIGRIASIENNHKPVDTAKKGQKAA 1352
P+++GVDV+EG +VGTPIC +R + +G++ S+E NH+PV KKGQ AA
Sbjct: 878 GPMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPVQEVKKGQTAA 937
Query: 1353 -IKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK-ANYRDDLSMDEWRLLVKLKN 1410
+ + + QQ ++GRH D D L S +SR+SID LK +RD ++ +W LL KLK
Sbjct: 938 GVAVRLEDPSGQQPIWGRHVDENDTLYSLVSRRSIDTLKDKAFRDQVARSDWLLLKKLKV 997
Query: 1411 LFKIQ 1415
+F I+
Sbjct: 998 VFGIE 1002
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4 | Back alignment and function description |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQYIFNS 1104
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1164
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Homo sapiens (taxid: 9606) |
| >sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1160
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1161 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Mus musculus (taxid: 10090) |
| >sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/596 (55%), Positives = 437/596 (73%), Gaps = 5/596 (0%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 623 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 682
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+N+LK
Sbjct: 683 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 742
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 743 KKCPFIVALNKIDRLYDWKKSPDSDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 802
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 803 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 862
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 863 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 922
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V DD++ +K+E + ++K ++ I +GV VQAS
Sbjct: 923 AAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 982
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 983 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1040
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ E AVFPC +KILP +FN
Sbjct: 1041 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1100
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1160
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1161 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1215
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Rattus norvegicus (taxid: 10116) |
| >sp|Q5RDE1|IF2P_PONAB Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/596 (53%), Positives = 432/596 (72%), Gaps = 5/596 (0%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+PI C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 881 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHG EPQ ++ NL K
Sbjct: 687 NFGRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGGEPQKMKPTNLPKP 746
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ F+VALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFMVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 806
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 866
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ V P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTSEV--PYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + K++K+ + AVFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEKFKHIAVFPCKMKILPQYIFNS 1104
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD AKKGQ+ +KI
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1164
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KMFGRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PG-ESPKMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Pongo abelii (taxid: 9601) |
| >sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1 | Back alignment and function description |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/608 (51%), Positives = 433/608 (71%), Gaps = 9/608 (1%)
Query: 810 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 869
P D T A+++ RSPI CI+GHVDTGKT LLD IR TNVQ GEA GITQQIGA++ P
Sbjct: 445 PTTDPTTTFADKSYRSPIICILGHVDTGKTSLLDKIRNTNVQGGEARGITQQIGASFIPV 504
Query: 870 ENIRERTREL--KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 927
+ I+E+T+ K K+PGLL+IDTPGHESF NLRSRGSGLCD+AILV+DIMHGL+
Sbjct: 505 DAIKEQTKSFAEKIKMDFKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLQA 564
Query: 928 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987
QT+ES+NLL+MR T FIVALNKVDR+Y WK C N +A K Q+ EF+ ++ I+
Sbjct: 565 QTLESINLLRMRKTPFIVALNKVDRIYDWKPCVNTDFKEAYKIQSKSAAQEFDYKVKDII 624
Query: 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE 1047
L Q +N ELY++NKD + ++VPTSA +GEGI DL+L+++Q QK M++K+ F N+
Sbjct: 625 AALAGQELNAELYWRNKDHRKYVSLVPTSANTGEGISDLMLVVIQLMQKLMLDKVEFTNQ 684
Query: 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1107
LQCT+LEVKVIEG GTTIDVVLVNG L+EGD+IVV G GPI T+IR+LLTP P++E RV
Sbjct: 685 LQCTLLEVKVIEGFGTTIDVVLVNGTLNEGDKIVVSGFNGPIETSIRSLLTPPPLRESRV 744
Query: 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRID 1167
K +++HK I+AA GIKI A GLE A+ GT L+VVGP+DD+E ++ EA ++ SV++ ++
Sbjct: 745 KSQFINHKSIRAAMGIKIVAPGLEKAVPGTSLHVVGPNDDIEKIRAEAKREVDSVLNDVE 804
Query: 1168 KSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYAT 1227
SG GV VQASTLGSLEA L FLK +KIPV+ ++IGPVHKK +M AS+ML+K +YA
Sbjct: 805 TSGIGVSVQASTLGSLEAFLNFLKK--IKIPVANVAIGPVHKKHIMNASIMLDKDPKYAI 862
Query: 1228 ILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCV 1287
+LAFDVK+ A + A E+ V++ + IY ++ + +KE+ + E A V+PC+
Sbjct: 863 LLAFDVKIEESAIQAANEMKVQVLSDETIYLFEEKLKKHFGAIKEKLRAETASICVWPCI 922
Query: 1288 LKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKK 1347
L++ VF +PI++GV V EG ++GTPIC+P+ + D+G++ I+ N K V AKK
Sbjct: 923 LEV--TNVFRNSNPILVGVRVKEGTLRIGTPICVPESNCADVGKVIGIKLNEKDVTLAKK 980
Query: 1348 GQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVK 1407
++ I +N+ + RHFD + + +S I+R+S+D LK + +DL+ + +LL
Sbjct: 981 DDVVSVAIDDNNT---KTTIYRHFDDKKQWMSKITRESLDALKEGWSEDLTKQDIQLLKF 1037
Query: 1408 LKNLFKIQ 1415
+K ++KIQ
Sbjct: 1038 MKTVYKIQ 1045
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Dictyostelium discoideum (taxid: 44689) |
| >sp|A8A8D3|IF2P_IGNH4 Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/584 (41%), Positives = 365/584 (62%), Gaps = 16/584 (2%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK- 880
LR PI ++GHVD GKT LLD IRGT V E G ITQ IGA+ P + I + T LK
Sbjct: 11 RLRQPIVAVLGHVDHGKTTLLDKIRGTVVALKEPGQITQHIGASLVPTDVIEKVTEPLKK 70
Query: 881 --ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
L++PGLL IDTPGHE F+NLR RG + D+AILVVD+ G +PQT E++ +LK
Sbjct: 71 IIPTVKLELPGLLFIDTPGHEIFSNLRRRGGAVADLAILVVDLNEGFQPQTYEAVEILKQ 130
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
R F+VA NK+DR+ GW++ + P + + ++Q+ +V+ + ++ +I+ +L + G ++E
Sbjct: 131 RRVPFVVAANKIDRIPGWRSYPDQPFLISYRKQSEEVRERLDNKIYEIMGELAKLGFDSE 190
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEVKV 1057
+ + + IVP SA +GEGIP+LL +L Q+ M +L + + ++EVK
Sbjct: 191 RFDRITNFTRQIAIVPISAKTGEGIPELLAVLAGLAQRYMKGRLKYVEGPAKGVIMEVKE 250
Query: 1058 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1117
G+G+TID ++ +G++ +GD IVV G++GPIVT +RALL P P+ E+R + +++
Sbjct: 251 EPGYGSTIDTIIYDGIIRQGDTIVVGGIEGPIVTKVRALLVPAPLTEMRATKRFEPVEEV 310
Query: 1118 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1177
AA G+KI A GLE A+AG +YVV + LE++KE+ +++ VM DK EGV V+A
Sbjct: 311 SAAAGVKIVAPGLEKAVAGAPVYVVDSPEKLEELKEQVKREVEEVMIETDK--EGVIVKA 368
Query: 1178 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1237
TLG+LEAL++FLK+ IPV +GPV K+D++ A + K KEY ILAF+VKV P
Sbjct: 369 DTLGTLEALVQFLKNRG--IPVRMARVGPVTKRDIVEAMTVKSKNKEYGVILAFNVKVLP 426
Query: 1238 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1297
EA+ELAE+ G+KIF ++IY L ++F ++ L+EE+KR+ + V P ++ILP VF
Sbjct: 427 EAKELAEKEGIKIFQHNVIYRLIEEFEEWLKALREEEKRKVLETLVRPGKIRILPGFVFR 486
Query: 1298 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357
+ DP ++GV+V+ G+ K P+ + D +G I I++ + V A+ GQ+ AI I G
Sbjct: 487 RSDPAIVGVEVLGGVIKPKYPLM--KEDGSRVGSILQIQDKGQSVPEARAGQQVAISIKG 544
Query: 1358 SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1401
+ M GRH D L + + + + ++++LS DE
Sbjct: 545 ------RVMVGRHIHEGDVLYTDVPAEHAKLWLTKFKNELSDDE 582
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) (taxid: 453591) |
| >sp|A3DMS0|IF2P_STAMF Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/590 (40%), Positives = 361/590 (61%), Gaps = 17/590 (2%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 876
K + +R PI ++GHVD GKT LLD IRGT V + E G ITQ +GA+ PA +R+
Sbjct: 5 KSGKSWIRQPIVVVLGHVDHGKTTLLDKIRGTAVAKKEPGEITQHVGASIVPASVLRKVA 64
Query: 877 RELK---ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 933
LK +++PGLL +DTPGHE F+NLR RG + DIAILVVDIM G +PQT ES+
Sbjct: 65 EPLKKYFPKLKIEIPGLLFVDTPGHELFSNLRRRGGSVADIAILVVDIMEGFQPQTWESI 124
Query: 934 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 993
+LK R FIVA NK+DR+ GWK + P ++ I++Q+ + + + ++++QL E
Sbjct: 125 QILKERKVPFIVAANKIDRIPGWKPNHDQPFLETIRKQDPRIVSRLEELIYRLISQLYEA 184
Query: 994 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE-LQCTV 1052
G E + + KD T IVP SA +GEG+P+LL LL Q+ M ++L E + V
Sbjct: 185 GFMAERFDRVKDFRTTVAIVPVSAKTGEGVPELLALLTGLVQRFMKKRLVTSEEPAKGVV 244
Query: 1053 LEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTY 1111
LEVK G GTTIDV++ +GV+ GD IVV G PIVT +RALL P P++++R G +
Sbjct: 245 LEVKEEPGLGTTIDVIIYDGVIRRGDTIVVGGKDKPIVTKVRALLMPRPLQDMRAHEGKF 304
Query: 1112 LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGE 1171
+ +Q+ AA G+KI+A L++A+AG+ ++VV +D +E+ + E+++SV RI
Sbjct: 305 VSVEQVVAATGVKISAPDLDNALAGSPIFVVPSEDKIEEYIKIVKEEIESV--RIKTDNI 362
Query: 1172 GVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAF 1231
GV V+A TLG+LEA++E LK + IPV +GPV K DV+ ASV + EY I+AF
Sbjct: 363 GVVVKADTLGTLEAVVEALKRE--NIPVRLADVGPVSKNDVLEASVSKNHRPEYGVIIAF 420
Query: 1232 DVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKIL 1291
+VK+ PEA E A VKIF ++IY L + + ++ L+E++K + + + P ++IL
Sbjct: 421 NVKILPEAEEYAARENVKIFRHNVIYKLIEDYIGWVKQLREQEKIKELESLIRPGKIRIL 480
Query: 1292 PNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKA 1351
P +F + +P ++GV+V+ G+ K G P+ ++D + +G I I + + A+ GQ
Sbjct: 481 PGYIFRRSNPAIVGVEVIGGVIKPGYPLM--RKDGMRLGTIMQIRDRDNVLKEARAGQSV 538
Query: 1352 AIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1401
AI I G + + GRH D D L + I ++ + + Y+++LS DE
Sbjct: 539 AISIRG------RILVGRHVDEGDILYTDIPKQHVHLWLTKYKNELSDDE 582
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550) |
| >sp|Q9Y9B3|IF2P_AERPE Probable translation initiation factor IF-2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/591 (39%), Positives = 352/591 (59%), Gaps = 16/591 (2%)
Query: 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE 878
E LR PI ++GHVD GKT LLD IR T V EAGGITQ IGA+ PA+ I +
Sbjct: 10 GERRLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEP 69
Query: 879 LKANATLK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
LK +K +PGLL IDTPGHE F+NLR RG + D AILVVDIM G +PQT E+L LL
Sbjct: 70 LKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELL 129
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996
K R F++A NK+DR+ GWK +AP ++ I++Q+ V+ R+ +IV ++ E G+
Sbjct: 130 KERRVPFLIAANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLP 189
Query: 997 TELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF-RNELQCTVLEV 1055
EL+ + KD IVP SA +GEGIP+LL +L TQ + E+L + + VLEV
Sbjct: 190 AELFTRIKDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEV 249
Query: 1056 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK-GTYLHH 1114
K ++G GT +D V+ +GVL + D IVV G +GPIVT +RALL P P++++R + ++
Sbjct: 250 KEMQGFGTVVDAVIYDGVLKKEDIIVVGGREGPIVTRVRALLMPAPLQDIRSREARFVQV 309
Query: 1115 KQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVC 1174
++ AA G++I A GL+ IAG+ +Y +++ + E +++ + R + GV
Sbjct: 310 DRVYAAAGVRIAAPGLDDVIAGSPIYAAESEEEARKLMEAVQREIEELRFRTENI--GVV 367
Query: 1175 VQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVK 1234
V+A TLG+LEAL+E L+ V PV IGPV + DV+ A+V + +LAF+VK
Sbjct: 368 VKADTLGTLEALVEALRRRGV--PVRLADIGPVSRSDVLDAAVTRKIDPYLGVVLAFNVK 425
Query: 1235 VTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNC 1294
V PEA E A GVKIF +IY L + + ++ KE ++ +A + + P +ILP
Sbjct: 426 VLPEAEEEASRAGVKIFRESMIYKLIEDYEEWVKKEKEAERLKALNSLIRPGKFRILPGY 485
Query: 1295 VFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIK 1354
VF + DP ++GV+V+ G+ + G P+ Q ++GRI +I++ + ++ A+ G A+
Sbjct: 486 VFRRSDPAIVGVEVLGGVIRPGYPVMDSQGR--ELGRIMAIKDRDRSLEEARLGAAVAVS 543
Query: 1355 IAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLL 1405
I G + + GRH + D L +++ + + ++D +S DE +L
Sbjct: 544 IQG------RILIGRHANEGDILYTNVPAQHAYKILTEFKDLVSKDELDVL 588
|
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | ||||||
| 359493041 | 1393 | PREDICTED: uncharacterized protein LOC10 | 0.809 | 0.821 | 0.691 | 0.0 | |
| 224120424 | 1331 | predicted protein [Populus trichocarpa] | 0.700 | 0.744 | 0.732 | 0.0 | |
| 449443744 | 1370 | PREDICTED: uncharacterized protein LOC10 | 0.710 | 0.734 | 0.717 | 0.0 | |
| 449475431 | 1370 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.710 | 0.734 | 0.716 | 0.0 | |
| 356576051 | 1355 | PREDICTED: uncharacterized protein LOC10 | 0.674 | 0.704 | 0.728 | 0.0 | |
| 356535804 | 1344 | PREDICTED: eukaryotic translation initia | 0.676 | 0.712 | 0.728 | 0.0 | |
| 357443693 | 1438 | Eukaryotic translation initiation factor | 0.792 | 0.780 | 0.661 | 0.0 | |
| 297842433 | 1252 | hypothetical protein ARALYDRAFT_895554 [ | 0.781 | 0.883 | 0.632 | 0.0 | |
| 6143896 | 1280 | putative translation initiation factor I | 0.780 | 0.862 | 0.646 | 0.0 | |
| 255574361 | 1263 | translation initiation factor if-2, puta | 0.865 | 0.969 | 0.595 | 0.0 |
| >gi|359493041|ref|XP_002267014.2| PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1379 bits (3570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1259 (69%), Positives = 977/1259 (77%), Gaps = 114/1259 (9%)
Query: 228 DKDEEDEP--VIFTDKKKKSKKSGKNS-STFDLLVNENDDV------KEDKDE-DDEPIT 277
+K E D+P + FT KKK SK + K S+FD+L +E D + ++ DE DD P+
Sbjct: 178 NKSENDDPPVIAFTGKKKSSKGNKKGGVSSFDVL-DEADGIDSTISEQQSVDEADDAPVI 236
Query: 278 FT-----DKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSK 332
FT K K G +S+F+ L D+D DEK ++DE+ I F+ KKK + SSK
Sbjct: 237 FTGKKKSSKANKKGGGNVFAASSFEGLGEGDKDSDEKNEEDEDIASIAFSGKKKSSNSSK 296
Query: 333 KTVSSFS----------EVLLDEENVVED--------------------APVLS------ 356
KT + FS +V + E VED VLS
Sbjct: 297 KTSNIFSVASDDEDKDEDVSVSEAAQVEDEEDASKIAFSGKKKSSKKKNNNVLSETGLGT 356
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKG-EVVAQTSKNKKKKKEKEKPRSERTAQEEDDL 415
D++ V+++Q S + E +D K NK V +TSKNKKKKK +S RTAQEEDDL
Sbjct: 357 DLADVVESEQPSVGTVDNEGNDSKSNKQVSGVVETSKNKKKKK-----KSGRTAQEEDDL 411
Query: 416 EKILAELGQGPA------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKK 469
+KILAELG+G + PQEEKVQVQP EPV DA EK GEEE ESAA+KKKKKKK
Sbjct: 412 DKILAELGEGSSSLKPTTPQEEKVQVQP-EPVQAADATVEKEGEEEGVESAAAKKKKKKK 470
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
EKEKEKKAAAAA G E E K+ + KSK P+KK+ K VREMQEALARRKEAEE
Sbjct: 471 EKEKEKKAAAAA----AAAGAVEVKEEKQVETKSKVPDKKLPKHVREMQEALARRKEAEE 526
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKKREEEERLRKEEEER+R EELER AEEAKRRKKE+EKEKLLKKKQEGKLLTGKQKEEA
Sbjct: 527 RKKREEEERLRKEEEERRRQEELERLAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEA 586
Query: 590 RRLEAMRNQFLAK--GIPLPTGDKEAASKRPKYQTKKKSAH-HQANGAVPLKEDSIESKE 646
RR EAMRNQ LA G+P+ TGD A +KRPKYQTKK +H QANGA P K D E+ E
Sbjct: 587 RRREAMRNQILANAGGLPISTGD--APTKRPKYQTKKVKSHPSQANGAAPSKPD--ENTE 642
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
++ ET+ EVD E EK+EE +S+ VEEK EI +A +EN VEEE+DD++ + AKSWD
Sbjct: 643 AKESLPETVSEVDSLEPEKLEEVDSVDVEEKLEITNATEENGVEEEEDDEEWD--AKSWD 700
Query: 707 D--VNLNVKGAFDDEEADSEPEPLVKKEIK-SAIPSPRDAGEVYCFILPLSRYRLFCFLF 763
D V L K AF DEEADSE EP+V+KE K +A+P+ R+ G
Sbjct: 701 DAVVTLPDKSAFADEEADSETEPVVRKETKVAALPASRNVG------------------- 741
Query: 764 FILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKE-------PAAKSKEPEVDATP 816
+A K ++ K A+P QP+K+QD + K + + K P DA+P
Sbjct: 742 -------VTTAAAKTSIVPKTAVPTQPIKTQDVRSEKSQIEIEVTNKSRKKAAPSSDASP 794
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 876
+ EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT
Sbjct: 795 QGTEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 854
Query: 877 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL
Sbjct: 855 KELKADANLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 914
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996
KMRNTEFIVALNKVDRLYGWK CRN+PI KA+KQQ+ DVQNEFNMRL QI+TQ KEQG+N
Sbjct: 915 KMRNTEFIVALNKVDRLYGWKVCRNSPIQKAMKQQSKDVQNEFNMRLTQIITQFKEQGLN 974
Query: 997 TELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVK 1056
TELYYKNK+ GETF+IVPTSAISGEGIPDLLLLLV WTQKTMVEKLT+ +E+QCTVLEVK
Sbjct: 975 TELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVHWTQKTMVEKLTYSSEVQCTVLEVK 1034
Query: 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116
V+EGHGTTIDVVLVNGVLHEGDQIVVCG+QGPIV TIRALLTPHPMKELRVKGTYLHHKQ
Sbjct: 1035 VVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVATIRALLTPHPMKELRVKGTYLHHKQ 1094
Query: 1117 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1176
IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLED+KE AMEDMKSV+SRIDKSGEGV VQ
Sbjct: 1095 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDIKEAAMEDMKSVLSRIDKSGEGVYVQ 1154
Query: 1177 ASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVT 1236
ASTLGSLEALLEFLKS AV IPVSGI IGPVHKKDVM+ASVMLEKKKEYATILAFDVKVT
Sbjct: 1155 ASTLGSLEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVT 1214
Query: 1237 PEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296
PEARELA+++GVKIFIADIIYHLFDQF AYI+NLKEEKKREAADEAVFPCVLKI+PNC+F
Sbjct: 1215 PEARELADDMGVKIFIADIIYHLFDQFKAYIDNLKEEKKREAADEAVFPCVLKIMPNCIF 1274
Query: 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1356
NKKDPIVLGVDV+EGIAKVGTPICIPQRDFIDIGRIASIENNHKPVD AKKGQ+ AIKI
Sbjct: 1275 NKKDPIVLGVDVLEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDIAKKGQRVAIKIT 1334
Query: 1357 GSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
+N EEQQKMFGRHF++EDELVSHISRKSID LKANYRDDLS+DEW+L+VKLK LFKIQ
Sbjct: 1335 STNPEEQQKMFGRHFEMEDELVSHISRKSIDTLKANYRDDLSLDEWKLVVKLKTLFKIQ 1393
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120424|ref|XP_002318326.1| predicted protein [Populus trichocarpa] gi|222858999|gb|EEE96546.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1326 bits (3431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1073 (73%), Positives = 873/1073 (81%), Gaps = 82/1073 (7%)
Query: 372 SIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA---- 427
+IVE++D KV K E VA+TSKNKKKKK K S RTAQEEDDL+KILAELG G +
Sbjct: 312 NIVEANDSKVTKSEAVAETSKNKKKKKGK----SGRTAQEEDDLDKILAELGGGASTLKP 367
Query: 428 ----PQEEKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
PQEEK+ VQP EPVA PDA E+ EE KKK+K+KEK+ AAA
Sbjct: 368 SESPPQEEKLNVQP-EPVAVPDALVEKEGEEEKEESAAAKKKKKKKEKEKEKKVAAAAAA 426
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
AA E ++ K+E E KK D K K EKK+ K VREMQEALARRKE EERK +EEEE+
Sbjct: 427 AAKEEKLEEAKAETSEPKKTDAKGKAAEKKLPKHVREMQEALARRKEMEERKAKEEEEKR 486
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
RKEEEER R EELERQAEEA+RRKKE+EKEKLLKKKQEGKLLTGKQKEE RRLEAMRNQ
Sbjct: 487 RKEEEERLRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQI 546
Query: 600 LAK-GIPLPTGDKE-AASKRPKYQTKK-KSAHHQANGAVPLK-EDSIESKEKEQEKQETL 655
LA GI +PT D++ A +KRP+YQTKK K AHHQANG +K E+ +E+K KEQE+QE +
Sbjct: 547 LANAGITVPTADRDNAPTKRPRYQTKKSKPAHHQANG---IKIEEHVEAKGKEQEEQEEV 603
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
EV+ E EK E E EEK E+A P+EN +EE+DDD EEWDAKSWDDVNLNVKGA
Sbjct: 604 HEVETVELEKAEPVE----EEKTEVASVPEENGMEEDDDD--EEWDAKSWDDVNLNVKGA 657
Query: 716 FDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLFSA 775
FDDEE DSEPEP++KKE KS++P+ R A
Sbjct: 658 FDDEE-DSEPEPVLKKETKSSVPASRGADA------------------------------ 686
Query: 776 EKPAVAVKKAIPEQPLKSQDA-------------VTRKKEPAAKSKEPEVDATPKQAEEN 822
KPA+AV+K + QP+ S+D RKK+ A K+K DA PKQ EEN
Sbjct: 687 -KPAIAVRKPVTSQPMDSRDVENKKIQTEVEVSDKNRKKDAAVKNKGAVSDAIPKQGEEN 745
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+
Sbjct: 746 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKAD 805
Query: 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
A L VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL+MRNTE
Sbjct: 806 AKLNVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTE 865
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 1002
FIVALNKVDRLY WK RNAPI KA+KQQ+ DVQNEF+ RL++++TQ KEQG+NTELYYK
Sbjct: 866 FIVALNKVDRLYAWKAQRNAPIRKALKQQSKDVQNEFDRRLMEVITQFKEQGLNTELYYK 925
Query: 1003 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062
NKD GETFNIVPTSAISGEGIPDLLLLL+QW+QKTM+EKLTFRNE CTVLEVKVIEGHG
Sbjct: 926 NKDMGETFNIVPTSAISGEGIPDLLLLLIQWSQKTMIEKLTFRNE--CTVLEVKVIEGHG 983
Query: 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122
TTIDVVLVNGVLHEGDQIV GPIVTTIRALLTPHPMKELRVKGTYLHHK+IKAAQG
Sbjct: 984 TTIDVVLVNGVLHEGDQIV-----GPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQG 1038
Query: 1123 IKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGS 1182
IKIT QGLEHAIAGTGLYVVG DDD+EDVKE AMEDMKSVMSRIDK+GEGV VQASTLGS
Sbjct: 1039 IKITGQGLEHAIAGTGLYVVGRDDDVEDVKESAMEDMKSVMSRIDKTGEGVYVQASTLGS 1098
Query: 1183 LEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEAREL 1242
LEALLEFLKS AV IPVSGI IGPVHKKDVM++SVMLEKKKEYATILAFDVKVTPEAREL
Sbjct: 1099 LEALLEFLKSPAVSIPVSGIGIGPVHKKDVMKSSVMLEKKKEYATILAFDVKVTPEAREL 1158
Query: 1243 AEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPI 1302
A+ELGVKIFIADIIYHLFDQF AYI NLKEEKKREAADEAVFPCVL+I+P C+FNKKDPI
Sbjct: 1159 ADELGVKIFIADIIYHLFDQFKAYIQNLKEEKKREAADEAVFPCVLEIIPECIFNKKDPI 1218
Query: 1303 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1362
+LGVDV+EGI KVGTP+C+PQ+++IDIGRIASIE N K VD AKKGQK AIKI G+N+EE
Sbjct: 1219 ILGVDVLEGILKVGTPLCVPQKEYIDIGRIASIEFNKKSVDYAKKGQKVAIKIVGTNAEE 1278
Query: 1363 QQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
QQKM GRHFD ED+LVSHI+R+SID+LK NYRDDLS+++WRL+VKLK LFKIQ
Sbjct: 1279 QQKMHGRHFDNEDQLVSHITRRSIDILKVNYRDDLSIEDWRLVVKLKTLFKIQ 1331
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443744|ref|XP_004139637.1| PREDICTED: uncharacterized protein LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1302 bits (3370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1075 (71%), Positives = 873/1075 (81%), Gaps = 69/1075 (6%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLF 773
+F DEE +SEPE +KK+ K+ + + L
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKAL---------------------- 720
Query: 774 SAEKPAVAVKKAIPEQPLKSQDAVTRKK-------------EPAAKSKEPEVDATPKQAE 820
A +K +P Q +KSQD +KK E A + K DATP Q E
Sbjct: 721 -----AAPSQKGLPSQSIKSQDIENKKKQDGVEVADKGKRKEDAVRKKASISDATPVQQE 775
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK
Sbjct: 776 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 835
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
A+A LKVPGLL+IDTPGHESFTNLRSRGSGLCD+AILVVDIMHGLEPQTIESLNLL+MRN
Sbjct: 836 ADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRN 895
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
TEFIVALNKVDRLYGWK+ RNAPI+K +KQQ DVQNEFNMRL+QI+TQ KEQG+NTELY
Sbjct: 896 TEFIVALNKVDRLYGWKSIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELY 955
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060
YKNK+ GETF+IVPTSA++GEGIPD+LLLLVQW QKTM +KLT+ +E+QCTVLEVKV+EG
Sbjct: 956 YKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEG 1015
Query: 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120
HGTTIDV+LVNGVLHEGDQIVVCG+QGPIVT+IRALLTPHPMKELRVKGTYLHHK+IKAA
Sbjct: 1016 HGTTIDVILVNGVLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGTYLHHKEIKAA 1075
Query: 1121 QGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTL 1180
QGIKIT QGLEHAIAGT L+VVGP+DDLED+K+ AMEDMKSV+SRIDK+GEGVCVQASTL
Sbjct: 1076 QGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTL 1135
Query: 1181 GSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEAR 1240
GSLEALLEFLKS AV IPVSGISIGPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEAR
Sbjct: 1136 GSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEAR 1195
Query: 1241 ELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKD 1300
ELA+ELGVKIFIADIIYHLFDQF AYI+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKD
Sbjct: 1196 ELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKD 1255
Query: 1301 PIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNS 1360
PIVLGVDV+EGIAKVGTPICIPQR+FIDIGRIASIENNHKPVD AKKGQK AIKI G +S
Sbjct: 1256 PIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSS 1315
Query: 1361 EEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
EEQQKM+GRHFD+EDELVSHISRKSID+LKANYRDDLS DEWRL+VKLKNLFKIQ
Sbjct: 1316 EEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475431|ref|XP_004154455.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101204360 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1300 bits (3365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1075 (71%), Positives = 872/1075 (81%), Gaps = 69/1075 (6%)
Query: 371 SSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAP-- 428
SS ++SD NK E VA+TSKNKKKKK +S RTAQEEDDL+KILAELG+GPA
Sbjct: 335 SSNLDSDLSNANKTEAVAETSKNKKKKK-----KSGRTAQEEDDLDKILAELGEGPAISK 389
Query: 429 --------QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAA 480
QE KV+ PPE VAPP+ E+ E KKK+K+KEK+ AAAA
Sbjct: 390 PADPPLFFQEAKVE-NPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAA 448
Query: 481 AAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
+++K ++ KSE +E KK KSK PEKK+ K VREMQEA+ARRKE EER+KREEEERL
Sbjct: 449 EGSDEKVEEVKSEIIEPKKXAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERL 508
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+KEEEER RLEELERQAEEAKRRKKE+EKEKLL+KK EGKLLTGKQKEE RRLEAMRNQ
Sbjct: 509 KKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQI 568
Query: 600 L--AKGIPLPTGDKEAASKRPKYQTKK-KSAHHQANGAVPLKEDSIES-KEKEQEKQETL 655
L A G+PL T D A +KRPKYQTKK K +HHQ NG K +E EK QEK +
Sbjct: 569 LSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTK--VVEHIVEKIQEKD--V 624
Query: 656 LEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDD--VNLNVK 713
E +V E+EK+E E + VEEK + +A ++NE++E++D+D+ + AKSWDD V+L++K
Sbjct: 625 AETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWD--AKSWDDAVVDLSLK 682
Query: 714 GAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLF 773
+F DEE +SEPE +KK+ K+ + + L
Sbjct: 683 SSFADEELESEPENDMKKDRKNGAGKFNNINSTFQKAL---------------------- 720
Query: 774 SAEKPAVAVKKAIPEQPLKSQDAVTRKK-------------EPAAKSKEPEVDATPKQAE 820
A +K +P Q +KSQD +KK E A + K DATP Q E
Sbjct: 721 -----AAPSQKGLPSQSIKSQDIENKKKQDGVEVADKGKRKEDAVRKKASISDATPVQQE 775
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK
Sbjct: 776 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 835
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
A+A LKVPGLL+IDTPGHESFTNLRSRGSGLCD+AILVVDIMHGLEPQTIESLNLL+MRN
Sbjct: 836 ADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRN 895
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
TEFIVALNKVDRLYGWK+ RNAPI+K +KQQ DVQNEFNMRL+QI+TQ KEQG+NTELY
Sbjct: 896 TEFIVALNKVDRLYGWKSIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELY 955
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060
Y NK+ GETF+IVPTSA++GEGIPD+LLLLVQW QKTM +KLT+ +E+QCTVLEVKV+EG
Sbjct: 956 YXNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEG 1015
Query: 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120
HGTTIDV+LVNGVLHEGDQIVVCG+QGPIVT+IRALLTPHPMKELRVKGTYLHHK+IKAA
Sbjct: 1016 HGTTIDVILVNGVLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGTYLHHKEIKAA 1075
Query: 1121 QGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTL 1180
QGIKIT QGLEHAIAGT L+VVGP+DDLED+K+ AMEDMKSV+SRIDK+GEGVCVQASTL
Sbjct: 1076 QGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTL 1135
Query: 1181 GSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEAR 1240
GSLEALLEFLKS AV IPVSGISIGPVHKKDVM+ASVMLEKKKEYATILAFDVKVTPEAR
Sbjct: 1136 GSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEAR 1195
Query: 1241 ELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKD 1300
ELA+ELGVKIFIADIIYHLFDQF AYI+NLKEEKK+EAA+EAVFPCVLKILPNC+FNKKD
Sbjct: 1196 ELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKD 1255
Query: 1301 PIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNS 1360
PIVLGVDV+EGIAKVGTPICIPQR+FIDIGRIASIENNHKPVD AKKGQK AIKI G +S
Sbjct: 1256 PIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSS 1315
Query: 1361 EEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
EEQQKM+GRHFD+EDELVSHISRKSID+LKANYRDDLS DEWRL+VKLKNLFKIQ
Sbjct: 1316 EEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1370
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576051|ref|XP_003556148.1| PREDICTED: uncharacterized protein LOC100814875 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/1033 (72%), Positives = 844/1033 (81%), Gaps = 79/1033 (7%)
Query: 407 RTAQEEDDLEKILAELGQGPAP-------QEEKVQVQPPEPVAPPDAADEKVGEEEKEES 459
RTAQEE+DL+K+LAELG+ P Q++KVQ PE V DA+ EK GEEE ++
Sbjct: 378 RTAQEEEDLDKLLAELGETPPVPKPSTPPQDDKVQ-PTPEVVLVADASGEKEGEEETVDT 436
Query: 460 AASKKKKKKKEKEKEKK-----------AAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
AA+KKKKKKKEKEKEKK A + + K+E +E KKND K+K
Sbjct: 437 AAAKKKKKKKEKEKEKKAAAAAAAAAAAVAGTVPENETAEDKAEVIEPKKNDSKAKKAAD 496
Query: 509 K-MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
K + K VREMQEALARR+EAEERKKREEEERLRKEEEER+R EELERQAEEA+RRKKE+E
Sbjct: 497 KKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKERE 556
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRPKYQTKK- 624
KEKL KKKQEGKLLTGKQKEEARRLEAMR Q L G+ LP GD A +K+P YQTKK
Sbjct: 557 KEKLQKKKQEGKLLTGKQKEEARRLEAMRKQILNNTGGMTLPGGDSGAPAKKPIYQTKKV 616
Query: 625 KSAHHQANGAVPLK-EDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADA 683
K + NGA + +S+E+KE T +V E EK+EE ES+ V++K E+
Sbjct: 617 KPNNRNQNGAAAAQIAESVEAKE-------TATDVASEEPEKIEEVESVQVDDKVEL--- 666
Query: 684 PKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDA 743
P E + E+DDD++EWDAKSWDDVNLN KGAF DEEADSEP+P+VKKEIK+A+P+ ++A
Sbjct: 667 PVAVEEDGEEDDDEDEWDAKSWDDVNLNTKGAFADEEADSEPKPIVKKEIKNAVPA-QNA 725
Query: 744 GEVYCFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEP 803
G A KP +++ K+
Sbjct: 726 G------------------------------ATKPV-------------AEEIENGKQIN 742
Query: 804 AAKSKEPEVDATP-KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI 862
++EP P K ++ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI
Sbjct: 743 PHLNREPRKSVVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI 802
Query: 863 GATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM 922
GATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM
Sbjct: 803 GATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIM 862
Query: 923 HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
HGLE QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA+KQQ DVQNEFNMR
Sbjct: 863 HGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKALKQQTKDVQNEFNMR 922
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
L QI+T+ K QG+NTELYYKNK+ GETF+IVPTSAISGEGIPDLLLLL+QWTQKTMVEKL
Sbjct: 923 LTQIITEFKVQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLIQWTQKTMVEKL 982
Query: 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1102
T+ E+QCTVLEVKV+EGHGTTIDVVLVNGVLHEG+QIVVCG+QGPIVTTIRALLTPHPM
Sbjct: 983 TYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPM 1042
Query: 1103 KELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSV 1162
KELRVKGTYLHHK+IKAA GIKITAQGLEHAIAGTGLYVV PDDDLEDVKE AMEDM+SV
Sbjct: 1043 KELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSV 1102
Query: 1163 MSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKK 1222
MSRID++GEGVCVQASTLGSLEALLEFLK+ V IPVSGISIGPVHKKDVM+ASVMLEKK
Sbjct: 1103 MSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKK 1162
Query: 1223 KEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEA 1282
+EYA ILAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI+N+KEEKKREAADEA
Sbjct: 1163 REYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEA 1222
Query: 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPV 1342
VFPCV+ ILPNC+FNKKDPIVLGVD++EGI K+GTPICIP R+FIDIGRIASIENNHKPV
Sbjct: 1223 VFPCVMSILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPV 1282
Query: 1343 DTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEW 1402
D AKKGQK AIKI GSNSEEQQKMFGRHF+I+DELVSHISR+SID+LKANYRD+L+M+EW
Sbjct: 1283 DYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDELNMEEW 1342
Query: 1403 RLLVKLKNLFKIQ 1415
RL+VKLKNLFKIQ
Sbjct: 1343 RLVVKLKNLFKIQ 1355
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535804|ref|XP_003536433.1| PREDICTED: eukaryotic translation initiation factor 5B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1286 bits (3329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1027 (72%), Positives = 838/1027 (81%), Gaps = 70/1027 (6%)
Query: 407 RTAQEEDDLEKILAELGQGPA-------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEES 459
RTAQEE+DL+K+LAELG+ P PQ++KVQ PE V DA+ +K GEEE E+
Sbjct: 370 RTAQEEEDLDKLLAELGETPPVPKPTTLPQDDKVQ-PIPEVVPVADASGQKEGEEETVET 428
Query: 460 AASKKKKKKKEKEKEK------KAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKK-MSK 512
AA+KKKKKKKEKEKEK A A + K+E +E KKND K+K K + K
Sbjct: 429 AAAKKKKKKKEKEKEKKAAAAASAVGTAPENGTAEDKAEVIEPKKNDSKAKKAADKKVPK 488
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
VREMQEALARR+EAEERKKREEEERLRKEEEER++ EELERQAEEA+RRKKE+EKEKL
Sbjct: 489 HVREMQEALARRQEAEERKKREEEERLRKEEEERRKQEELERQAEEARRRKKEREKEKLQ 548
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRPKYQTKK-KSAHH 629
KKKQEGKLLTGKQKEEARRLEAMR Q L G+ LP GD A K+P YQTKK K +
Sbjct: 549 KKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGMTLPGGDSGAPPKKPIYQTKKVKPNNR 608
Query: 630 QANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEV 689
NGA + + E +ET ++ E EK+EE ES+ V++K E+ +E
Sbjct: 609 NQNGA---AAAAPAQTAETVEAKETDADLASEEPEKIEEVESVQVDDKVELL---VADED 662
Query: 690 EEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCF 749
+ +DDD++EWDAKSWDDVNLN KGAF DEE DSEP+P+VK EIK+A+P+ ++AG
Sbjct: 663 DGAEDDDEDEWDAKSWDDVNLNNKGAFADEEVDSEPKPIVK-EIKNAVPA-QNAG----- 715
Query: 750 ILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKE 809
A KP V ++ K+ ++E
Sbjct: 716 -------------------------ATKPVV-------------EEIENGKQAKPHLNRE 737
Query: 810 PEVDATP-KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP 868
P A P K ++ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP
Sbjct: 738 PRKSAVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP 797
Query: 869 AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 928
AENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE Q
Sbjct: 798 AENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQ 857
Query: 929 TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVT 988
TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA+KQQ DVQNEFNMRL QI+T
Sbjct: 858 TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAMKQQTKDVQNEFNMRLTQIIT 917
Query: 989 QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 1048
+ KEQG+NTELYYKNK+ GETF+IVPTSAISGEGIPDLLLLL+QWTQKTMVEKLT+ E+
Sbjct: 918 EFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLIQWTQKTMVEKLTYSEEV 977
Query: 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1108
QCTVLEVKV+EGHGTTIDVVLVNGVLHEG+QIVVCG+QGPIVTTIRALLTPHPMKELRVK
Sbjct: 978 QCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVK 1037
Query: 1109 GTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDK 1168
GTYLHHK+IKAA GIKITAQGLEHAIAGTGLYVV PDDDLEDVKE AMEDM+SVMSRID+
Sbjct: 1038 GTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDR 1097
Query: 1169 SGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATI 1228
+GEGVCVQASTLGSLEALLEFLK+ V IPVSGISIGPVHKKDVM+ASVMLEKK+EYA I
Sbjct: 1098 TGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAI 1157
Query: 1229 LAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVL 1288
LAFDVKVTPEARELA+ELGVKIFIADIIYHLFDQF AYI+N+KEEKKREAADEAVFPCV+
Sbjct: 1158 LAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVM 1217
Query: 1289 KILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKG 1348
ILPNC+FNKKDPIVLGVD++EGI K+GTPICIP R+FIDIGRIASIENNHKPVD AKKG
Sbjct: 1218 SILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKG 1277
Query: 1349 QKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKL 1408
QK AIKI GSNSEEQQKMFGRHF+I+DELVSHISR+SID+LK NYRD+L+M+EWRL+VKL
Sbjct: 1278 QKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDELNMEEWRLVVKL 1337
Query: 1409 KNLFKIQ 1415
KNLFKIQ
Sbjct: 1338 KNLFKIQ 1344
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357443693|ref|XP_003592124.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] gi|355481172|gb|AES62375.1| Eukaryotic translation initiation factor 5B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1279 bits (3310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1218 (66%), Positives = 935/1218 (76%), Gaps = 96/1218 (7%)
Query: 229 KDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKED------KDEDDEPITFTDKK 282
K +EDEPV+F+ KKK SK K +S+ ++ENDD +E+ +D+DDEPITF+ KK
Sbjct: 187 KSDEDEPVVFSGKKKPSKGWKKGASSLFSALDENDDGEEESKNEKVEDDDDEPITFSGKK 246
Query: 283 KKSNK----GGRMRSSAF---DLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTV 335
KKS+K G S A D + + +KDE+D FT KKK +K +
Sbjct: 247 KKSSKGSKKAGVSLSKAIPEEDSVSVSESAKGGDYEKDEDDVSFAFTGKKKSSKKKSGSA 306
Query: 336 SSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKK 395
++ V ++ S+ V+ ++ S D+ ++K E V TSKNKK
Sbjct: 307 AA---------KVSDEIEFGSESVNVVEAEKPSVDNG-------NISKSEEVVGTSKNKK 350
Query: 396 KKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQ---------EEKVQVQPPEPV--APP 444
K K+K S RT +EEDDL+K+LAELG+ PA ++KVQ P PV + P
Sbjct: 351 KNKKK----SGRTKEEEDDLDKLLAELGEAPATAQPAAAPPQQDDKVQ---PVPVVGSAP 403
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA----AAAAAEDKQQGKSEAVETKKND 500
A+ EK GE+E ESAA+KKKKKKKEKEKEKKAA +A + + K+EA+E KKND
Sbjct: 404 GASGEKEGEDETVESAATKKKKKKKEKEKEKKAAAAAAGSAPVVEAVEEKAEAIEPKKND 463
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
K+K +KK+ K VREMQE LARRKEAEE+KK+EEEE+ RKEEEER+R+EELERQAEEAK
Sbjct: 464 SKTKAADKKVPKHVREMQELLARRKEAEEKKKKEEEEKQRKEEEERRRIEELERQAEEAK 523
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL--AKGIPLPTGDKEAASKRP 618
RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMR Q L G+ LP D SK+P
Sbjct: 524 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPGADTGGPSKKP 583
Query: 619 KYQTKK-KSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEK 677
YQTKK KS + NGA +K E+ E ET ++D E EKVEE ES+ +E+K
Sbjct: 584 IYQTKKGKSTNRNHNGAAAVK------TEENVEATETTADLDTEELEKVEEVESVQMEDK 637
Query: 678 PEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
E+ + EV +EDDD ++EWDAKSWDDVNLN +GAF DEE DSEPEP+VKKEIK+ I
Sbjct: 638 VELPEV--VEEVVDEDDDVEDEWDAKSWDDVNLNDRGAFADEEVDSEPEPIVKKEIKNGI 695
Query: 738 PSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAV 797
PS AG + KP V K E+ + A
Sbjct: 696 PSKNAAG-----------------------------ATNKP---VTKPAAEETEDRKQAK 723
Query: 798 TRKKEPAAKSKEPEVDATP-KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG 856
++ K +P++ A P K +E NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG
Sbjct: 724 VVVED-KKKKHDPQLSAVPSKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG 782
Query: 857 GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAI 916
GITQQIGATYFPAENIRERT+ELKA+ATLKVPGLLVIDTPGHESF NLRSRGSGLCDIAI
Sbjct: 783 GITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAI 842
Query: 917 LVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976
LVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI KA+ QQ+ DVQ
Sbjct: 843 LVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMTQQSKDVQ 902
Query: 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036
NEFNMR+ QIVTQ KEQG+NTELYYKNK+ GETF+IVPTSAISGEGIPD+LLLLVQWTQK
Sbjct: 903 NEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQK 962
Query: 1037 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096
TM EKLT+ E+QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVV G+QGPIVTTIRAL
Sbjct: 963 TMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRAL 1022
Query: 1097 LTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAM 1156
LTPHPMKELRVKG+Y+HHK+IKAA GIKITAQGLEHAIAG LYVV PDDDLE +K+ A+
Sbjct: 1023 LTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAAL 1082
Query: 1157 EDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1216
ED++SV+SRID+SGEGVCVQASTLGSLEALLEFLK+ V IPVS I+IGPVHKKDVM+AS
Sbjct: 1083 EDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKAS 1142
Query: 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKR 1276
VMLEKK+EYATILAFDVKVTPEAR+LAEELGVKIFIADIIYHLFDQF AY++N+KEEKK+
Sbjct: 1143 VMLEKKREYATILAFDVKVTPEARDLAEELGVKIFIADIIYHLFDQFKAYMDNIKEEKKK 1202
Query: 1277 EAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIE 1336
E+ADEAVFPCVLKILPNCVFNKKDPIVLGVD++EGI K+GTPICIP ++FIDIGRIASIE
Sbjct: 1203 ESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIE 1262
Query: 1337 NNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDD 1396
NNHKPVD AKKGQK AIKI GSNSEEQQKMFGRHF+I+DELVSHISR+SID+LK NYRDD
Sbjct: 1263 NNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDD 1322
Query: 1397 LSMDEWRLLVKLKNLFKI 1414
L+M+EW+L+++ + F I
Sbjct: 1323 LTMEEWKLVIQREYSFLI 1340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842433|ref|XP_002889098.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] gi|297334939|gb|EFH65357.1| hypothetical protein ARALYDRAFT_895554 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1248 bits (3228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 764/1207 (63%), Positives = 890/1207 (73%), Gaps = 101/1207 (8%)
Query: 254 TFDLLVN--ENDDVKEDKDEDDEP-ITFTDKKKKSNKGGR-MRSSAFDLLENEDEDDDEK 309
+F LL + E DD + + D+DDEP I+FT KK SNKG + SAFD L + D+EK
Sbjct: 100 SFALLADKEEEDDNESNGDKDDEPVISFTGKKHASNKGKKGFAVSAFDALGGDK--DEEK 157
Query: 310 KDKDEED-EPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQS 368
D DEE PIIF+ KKKK+ S K ++ LLDEE +D S + K
Sbjct: 158 VDGDEEQVYPIIFSGKKKKSSKSSKKTTN-KVALLDEEEG-------TDASTSRLGKNTM 209
Query: 369 GDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSE---------------------- 406
GD +E KG V + + E + ++
Sbjct: 210 GDEESLEITFSGKKKGSSVLASVGDDSVAYETSQAKTPDTKSVEVIETGKSKKKKKKNKS 269
Query: 407 -RTAQEEDDLEKILAELGQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
RTA+EE D + +L E G+ PA P EEKVQ QP PVAP + ADEK GEEE
Sbjct: 270 GRTAEEEYDFDNVLEEFGETPAAGRPASSTPGEEKVQAQPG-PVAPVENADEKEGEEETV 328
Query: 458 ESAASKKKKKKKEKEKEKK------AAAAAAAEDKQQ-GKSEAVETKKNDGKSKGPEKKM 510
++AA+KKKKKKKEKEKEKK ++ A E KQ+ +E ++ KK D K K EKK+
Sbjct: 329 KTAAAKKKKKKKEKEKEKKAAAAAATSSVEAKEGKQEESVTEPLQEKKKDAKGKAAEKKI 388
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
K V+EMQEALARR+EAEERKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEK
Sbjct: 389 PKHVKEMQEALARRQEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEK 448
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSA 627
LL+KKQEGKLLT KQK EA + EA +NQ LA G LP D + +SKRP Y KKKSA
Sbjct: 449 LLRKKQEGKLLTAKQKSEALKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSA 508
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
H + +ED +E KE + ++ +TL EV + +T KV+ ES +EK E AD +EN
Sbjct: 509 HQKGIDTYVQREDEVEPKENKADEPDTLGEVGLTDTGKVDLIESANTDEKSEPADVAQEN 568
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVY 747
+EE+D EWDAKSWD V+LN+KG FDDEE EP+P+VKKE+K A+ D+G
Sbjct: 569 GIEEDD-----EWDAKSWDTVDLNLKGEFDDEE--EEPQPVVKKELKDAVSKAHDSG--- 618
Query: 748 CFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKS 807
KP AV KA+ E + A K+ K
Sbjct: 619 ---------------------------MSKPRTAVVKAMSE----VEHATPTKRAKKGKG 647
Query: 808 KEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF 867
P ++ ENLRS ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF
Sbjct: 648 LAP--SEFIEEGGENLRSIICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF 705
Query: 868 PAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 927
PAENIRERTRELKA+A +KVPGLLVIDTPGHESFTNLRSRGS LCD+AILVVDIMH LEP
Sbjct: 706 PAENIRERTRELKADAKIKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHELEP 765
Query: 928 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987
QTIESL+LL+MRNTEFIVALNKVD LYGWKTC+NAPIVKA+KQQ+ DV NEFN+RL +I+
Sbjct: 766 QTIESLSLLRMRNTEFIVALNKVDLLYGWKTCKNAPIVKAMKQQSKDVTNEFNLRLTRII 825
Query: 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE 1047
TQ KEQG+NTELYYKNK+ GETF+IVPTSA SGEGIPDLLLLLVQW QKTM EKLT+ ++
Sbjct: 826 TQFKEQGLNTELYYKNKEMGETFSIVPTSAKSGEGIPDLLLLLVQWAQKTMFEKLTYVDK 885
Query: 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1107
++CTVLEVKVIEGHGTTIDVVLVNG LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV
Sbjct: 886 VKCTVLEVKVIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 945
Query: 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRID 1167
KGTYLHHK+IKAAQGIKITAQGLEHAIAGT L+VVGPDDD+E +KE AMEDM+SV+SRID
Sbjct: 946 KGTYLHHKEIKAAQGIKITAQGLEHAIAGTSLHVVGPDDDIEAIKESAMEDMESVLSRID 1005
Query: 1168 KSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYAT 1227
SGEGV VQASTLGSLEALLEFLKS AV IPVSGI IGPVHKKD+M+A VMLEKKKEYAT
Sbjct: 1006 NSGEGVYVQASTLGSLEALLEFLKSPAVNIPVSGIGIGPVHKKDIMKAGVMLEKKKEYAT 1065
Query: 1228 ILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCV 1287
ILAFDVKVT EARELA+E+GVKIF ADIIY LFDQF AYI N+KEEK +E+A EAVFPCV
Sbjct: 1066 ILAFDVKVTTEARELADEMGVKIFCADIIYRLFDQFKAYIENIKEEKMKESAGEAVFPCV 1125
Query: 1288 LKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKK 1347
L+ILPNCVFNK+DPI+LGV V +GI K+GTPIC+P R+FIDIGRIASIENNHKPVD A+K
Sbjct: 1126 LQILPNCVFNKRDPIILGVKVHDGILKIGTPICVPGREFIDIGRIASIENNHKPVDYAEK 1185
Query: 1348 GQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVK 1407
G++ AIKI SN EE QKMFGRHFD+EDELVSHISR+SID+LKA+Y ++S ++W+LLVK
Sbjct: 1186 GEEVAIKIVASNREE-QKMFGRHFDMEDELVSHISRRSIDILKADYMKEMSTEKWKLLVK 1244
Query: 1408 LKNLFKI 1414
LK +FKI
Sbjct: 1245 LKRIFKI 1251
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6143896|gb|AAF04442.1|AC010718_11 putative translation initiation factor IF-2; 73082-68138 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1189 (64%), Positives = 904/1189 (76%), Gaps = 85/1189 (7%)
Query: 270 DEDDEP-ITFTDKKKKSNKG----GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT-D 323
D+DDEP I+FT KK S KG +SAFD L ++D+D +E + +EE+ PI F+
Sbjct: 134 DKDDEPVISFTGKKHASKKGKKGGNSFAASAFDALGSDDDDTEEVHEDEEEESPITFSGK 193
Query: 324 KKKKTKSSKKTVSSFSEVLLDEE------------NVVED--APVLS-------DVSGAV 362
KKK +KSSKK +SF+ LLDEE N +ED +P ++
Sbjct: 194 KKKSSKSSKKNTNSFTADLLDEEEGTDASNSRDDENTIEDEESPEVTFSGKKKSSKKKGG 253
Query: 363 DTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAEL 422
GD S+ + K V +T K+KKKKK +S RT QEE+DL+K+LA L
Sbjct: 254 SVLASVGDDSVADETKTSDTKNVEVVETGKSKKKKKNN---KSGRTVQEEEDLDKLLAAL 310
Query: 423 GQGPA--------PQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
G+ PA P EEK PEPVAP + A EK GEEE + KKKK+K++++K
Sbjct: 311 GETPAAERPASSTPVEEKAA--QPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKKA 368
Query: 475 KKAAAAAAAEDKQQGK-----SEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEE 529
AAAA ++ + ++ K +E ++ KK D K K EKK+ K VREMQEALARR+EAEE
Sbjct: 369 AAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEE 428
Query: 530 RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA 589
RKK+EEEE+LRKEEEER+R EELE QAEEAKR++KEKEKEKLL+KK EGKLLT KQK EA
Sbjct: 429 RKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAKQKTEA 488
Query: 590 RRLEAMRNQFLAKGIPLPTGDKEA---ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKE 646
++ EA +NQ LA G LP D + +SKRP Y KKKS+ + ED +E KE
Sbjct: 489 QKREAFKNQLLAAGGGLPVADNDGDATSSKRPIYANKKKSSRQKGIDTSVQGEDEVEPKE 548
Query: 647 KEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWD 706
+ ++Q+TL EV + +T KV+ E + +E AD +EN VEE+ D+++EWDAKSW
Sbjct: 549 NQADEQDTLGEVGLTDTGKVDLIELVNTDENSGPADVAQENGVEED--DEEDEWDAKSWG 606
Query: 707 DVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFIL 766
V+LN+KG FDDEE E +P+VKKE+K AI D+G
Sbjct: 607 TVDLNLKGDFDDEE--EEAQPVVKKELKDAISKAHDSG---------------------- 642
Query: 767 VVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSP 826
KP +A KA PE ++ + + A+K + + + EENLRSP
Sbjct: 643 ----------KPLIAAVKATPEVEDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSP 692
Query: 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK 886
ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LK
Sbjct: 693 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLK 752
Query: 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
VPGLLVIDTPGHESFTNLRSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVA
Sbjct: 753 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVA 812
Query: 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 1006
LNKVDRLYGWKTC+NAPIVKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD
Sbjct: 813 LNKVDRLYGWKTCKNAPIVKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDM 872
Query: 1007 GETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTID 1066
G+TF+IVPTSAISGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTID
Sbjct: 873 GDTFSIVPTSAISGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTID 932
Query: 1067 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1126
VVLVNG LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKIT
Sbjct: 933 VVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKIT 992
Query: 1127 AQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEAL 1186
AQGLEHAIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEAL
Sbjct: 993 AQGLEHAIAGTALHVVGPDDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEAL 1052
Query: 1187 LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEEL 1246
LE+LKS AVKIPVSGI IGPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+
Sbjct: 1053 LEYLKSPAVKIPVSGIGIGPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEM 1112
Query: 1247 GVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGV 1306
GVKIF ADIIYHLFD F AYI N+KEEKK+E+ADEAVFPCVL+ILPNCVFNKKDPIVLGV
Sbjct: 1113 GVKIFCADIIYHLFDLFKAYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGV 1172
Query: 1307 DVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKM 1366
DV+EGI K+GTPIC+P R+FIDIGRIASIENNHKPVD AKKG K AIKI GSN+EE QKM
Sbjct: 1173 DVIEGILKIGTPICVPGREFIDIGRIASIENNHKPVDYAKKGNKVAIKIVGSNAEE-QKM 1231
Query: 1367 FGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
FGRHFD+EDELVSHISR+SID+LK+NYRD+LS++EW+L+VKLKN+FKIQ
Sbjct: 1232 FGRHFDMEDELVSHISRRSIDILKSNYRDELSLEEWKLVVKLKNIFKIQ 1280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574361|ref|XP_002528094.1| translation initiation factor if-2, putative [Ricinus communis] gi|223532483|gb|EEF34273.1| translation initiation factor if-2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1454 (59%), Positives = 996/1454 (68%), Gaps = 230/1454 (15%)
Query: 1 MGRKKPSVRDEANLPAVAQGGGKSKKKAVVIDDDEYSIGTELTEEPQEEEAVNNNKKKKG 60
MGRKKP+ DE P G K K+ A IDDDEY+I T L+EE ++ V+ KKKG
Sbjct: 1 MGRKKPT--DEN--PQGGGGKSKKKQLA--IDDDEYNIDTGLSEELNDK--VSLTGKKKG 52
Query: 61 KKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGNNALSKSAFELLEGADK 120
KKGNQK+LQ +++ EE + + + +VF+GKKKSKGKKNG + S S F LL D
Sbjct: 53 KKGNQKSLQPDEEKEDVEE--DGEIQDLVFSGKKKSKGKKNGTASVFSASQFGLLRDEDN 110
Query: 121 DDD-----DDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESE 175
D++ D GDK S+ + + S K+ KK SGSLF+AAAFDA+D +E E
Sbjct: 111 DNNDDEETSDLLGDKNSEVEDEPVVSFTGKKKASKKPNKTSGSLFSAAAFDALDDDNEGE 170
Query: 176 VIDDDHSVEESDDDDDDVVEKSKKGGKKKS----GTTGFSASAFDLLDDEDEDVREDKDE 231
ID S E +DD D V+E + K K G++ F+A+ LDD
Sbjct: 171 EID--KSEEGNDDYDMPVIEFTGKKKSSKGAKKVGSSVFTAATLHGLDD----------- 217
Query: 232 EDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRM 291
N++V D+DEDD ITF+ KKK S K G
Sbjct: 218 ------------------------------NEEVNGDEDEDDGAITFSGKKKSSKKAGNK 247
Query: 292 RSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVED 351
SSA LLE E+++ E + +D + + +F+ +++ +
Sbjct: 248 FSSA--LLEEENDE--------EASATVKISDDIAEAEDDDGAAITFTG---KKKSSKKK 294
Query: 352 APVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQE 411
V DV+ +QQ+G ++E+ D KGE V +TSKNKKKKK K S RTAQE
Sbjct: 295 GKVNDDVA-----EQQTG---VLEAKD----KGEEVVETSKNKKKKKNK----SGRTAQE 338
Query: 412 EDDLEKILAELGQG--------PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK 463
E+DL+KILAELG+G PQEE QV E V P +A+ EK GEEEKEESAA+K
Sbjct: 339 EEDLDKILAELGEGLPTEKPSASTPQEESNQVHL-EQVPPENASGEKEGEEEKEESAAAK 397
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET--------KKNDGKSKGPEKKMSKQVR 515
KKKKKKEKEKEKKAAA AAA QGK E VE KK+D K K +KK+ K VR
Sbjct: 398 KKKKKKEKEKEKKAAAVAAAAAASQGKEEIVEQAKAETKEPKKSDAKGKAADKKVPKHVR 457
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
EMQEALARRKE EERK REEEE+ RKEEEER+R EELERQAEEA+RRKKE+EKEKLLKKK
Sbjct: 458 EMQEALARRKELEERKAREEEEKRRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKK 517
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAK-GIPLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
QEGKLLTGKQKEE RRLEAMRNQ LA GI +P DKE A TK+ H +
Sbjct: 518 QEGKLLTGKQKEEQRRLEAMRNQILANAGITIPAADKEGAP------TKRPKYHTK---- 567
Query: 635 VPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
+SK V K+EE + +E
Sbjct: 568 --------KSKPAANHHANDAAPV------KLEENNGMEEDED----------------- 596
Query: 695 DDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPLS 754
DEEWDAKSWDDVNLNVKGAFDDEE DSEP+ KKE+K+A P+ R+AG+
Sbjct: 597 --DEEWDAKSWDDVNLNVKGAFDDEEIDSEPK---KKEVKNAAPASRNAGQT-------- 643
Query: 755 RYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEP----------- 803
IP Q +KSQDA +K P
Sbjct: 644 ------------------------------PIPSQSVKSQDAAIKKPHPEVDDSGKNRTK 673
Query: 804 --AAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ 861
AAK+K P DATPK++EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ
Sbjct: 674 DAAAKNKTPPSDATPKESEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ 733
Query: 862 IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDI 921
IGATYFPAENIRERT+ELKA+A LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDI
Sbjct: 734 IGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDI 793
Query: 922 MHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981
MHGLEPQTIESLNLL+MRNTEFIVALNK+DRLYGWK CRNAPIVKA+KQQ+ DVQNEFN
Sbjct: 794 MHGLEPQTIESLNLLRMRNTEFIVALNKMDRLYGWKVCRNAPIVKAMKQQSKDVQNEFNR 853
Query: 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041
RL + M+ EL+ GEGIPDLLLLLVQWTQKTMVEK
Sbjct: 854 RLTGV--------MHIELFLN----------------GGEGIPDLLLLLVQWTQKTMVEK 889
Query: 1042 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP 1101
LT+ +E+QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG QGPIVTTIRALLTPHP
Sbjct: 890 LTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGFQGPIVTTIRALLTPHP 949
Query: 1102 MKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKS 1161
MKELRVKGTYLHHK+IKAAQGIKI+AQGLEHA+AGTGLYVVGPDD+LED+KE AMED++S
Sbjct: 950 MKELRVKGTYLHHKEIKAAQGIKISAQGLEHALAGTGLYVVGPDDNLEDIKEAAMEDVRS 1009
Query: 1162 VMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEK 1221
VM+RI+K EGV VQASTLGSLEALLEFLKS AV IPVSGI IGPVHKKDVM+ASVMLEK
Sbjct: 1010 VMNRIEKRDEGVYVQASTLGSLEALLEFLKSPAVGIPVSGIGIGPVHKKDVMKASVMLEK 1069
Query: 1222 KKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADE 1281
KKEYATILAFDVKV+ E RELA++LGVKIF+ADIIYHLFDQF AYI+NLKEEKK+EAADE
Sbjct: 1070 KKEYATILAFDVKVSQETRELADDLGVKIFMADIIYHLFDQFKAYIDNLKEEKKKEAADE 1129
Query: 1282 AVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKP 1341
AVFPCVLKILPNC+FNKKDPIVLGV+V +GI KVGTPIC+P +DFIDIGR+ASIENN+K
Sbjct: 1130 AVFPCVLKILPNCIFNKKDPIVLGVEVTDGIVKVGTPICVPDKDFIDIGRVASIENNYKA 1189
Query: 1342 VDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1401
VD AKKGQ AIK+ ++ E+QQKM+GRHFD ED LVS ISR SIDVLKANYRDDLSMDE
Sbjct: 1190 VDYAKKGQSVAIKLVNNSPEDQQKMYGRHFDHEDLLVSRISRTSIDVLKANYRDDLSMDE 1249
Query: 1402 WRLLVKLKNLFKIQ 1415
WRL+VKLKN+FKIQ
Sbjct: 1250 WRLVVKLKNIFKIQ 1263
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1415 | ||||||
| TAIR|locus:2030116 | 1294 | AT1G76810 [Arabidopsis thalian | 0.448 | 0.489 | 0.788 | 0.0 | |
| TAIR|locus:2030126 | 1166 | AT1G76820 [Arabidopsis thalian | 0.421 | 0.512 | 0.795 | 3.9e-292 | |
| TAIR|locus:2030041 | 1191 | AT1G76720 "AT1G76720" [Arabido | 0.4 | 0.475 | 0.785 | 8.2e-275 | |
| TAIR|locus:2199562 | 1092 | AT1G21160 "AT1G21160" [Arabido | 0.447 | 0.579 | 0.671 | 5.4e-254 | |
| POMBASE|SPAC56F8.03 | 1079 | SPAC56F8.03 "translation initi | 0.448 | 0.587 | 0.556 | 4.3e-196 | |
| ASPGD|ASPL0000017318 | 1072 | AN4038 [Emericella nidulans (t | 0.420 | 0.555 | 0.577 | 4.6e-187 | |
| FB|FBgn0026259 | 1144 | eIF5B "eIF5B" [Drosophila mela | 0.440 | 0.545 | 0.531 | 5.4e-187 | |
| UNIPROTKB|F1N6Y7 | 1220 | EIF5B "Uncharacterized protein | 0.417 | 0.484 | 0.526 | 2.8e-180 | |
| UNIPROTKB|J9P504 | 1219 | EIF5B "Uncharacterized protein | 0.417 | 0.484 | 0.526 | 9.5e-180 | |
| UNIPROTKB|I3L8K4 | 1219 | EIF5B "Uncharacterized protein | 0.417 | 0.484 | 0.526 | 9.5e-180 |
| TAIR|locus:2030116 AT1G76810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2596 (918.9 bits), Expect = 0., Sum P(6) = 0.
Identities = 507/643 (78%), Positives = 558/643 (86%)
Query: 777 KPAVAVKKAIPEQPLKSQDAV-TRXXXXXXXXXXXXVDATPKQA---EENLRSPICCIMG 832
KP +A KA PE +DA T+ P ++ EENLRSPICCIMG
Sbjct: 657 KPLIAAVKATPEV----EDATRTKRATRAKDASKKGKGLAPSESIEGEENLRSPICCIMG 712
Query: 833 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 892
HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT+ELKA+A LKVPGLLV
Sbjct: 713 HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLV 772
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952
IDTPGHESFTNLRSRGS LCD+AILVVDIMHGLEPQTIESLNLL+MRNTEFIVALNKVDR
Sbjct: 773 IDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDR 832
Query: 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI 1012
LYGWKTC+NAPIVKA+KQQN DV NEFN+RL I+ + +EQG+NTELYYKNKD G+TF+I
Sbjct: 833 LYGWKTCKNAPIVKAMKQQNKDVINEFNLRLKNIINEFQEQGLNTELYYKNKDMGDTFSI 892
Query: 1013 VPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1072
VPTSAISGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVKVIEGHGTTIDVVLVNG
Sbjct: 893 VPTSAISGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVKVIEGHGTTIDVVLVNG 952
Query: 1073 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH 1132
LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH+K+IKAAQGIKITAQGLEH
Sbjct: 953 ELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHYKEIKAAQGIKITAQGLEH 1012
Query: 1133 AIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKS 1192
AIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQASTLGSLEALLE+LKS
Sbjct: 1013 AIAGTALHVVGPDDDIEAIKESAMEDMESVLSRIDKSGEGVYVQASTLGSLEALLEYLKS 1072
Query: 1193 DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFI 1252
AVKIPVSGI IGPVHKKDVM+A VMLE+KKEYATILAFDVKVT EARELA+E+GVKIF
Sbjct: 1073 PAVKIPVSGIGIGPVHKKDVMKAGVMLERKKEYATILAFDVKVTTEARELADEMGVKIFC 1132
Query: 1253 ADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGI 1312
ADIIYHLFD F AYI N+ VFPCVL+ILPNCVFNKKDPIVLGVDV+EGI
Sbjct: 1133 ADIIYHLFDLFKAYIENIKEEKKKESADEAVFPCVLQILPNCVFNKKDPIVLGVDVIEGI 1192
Query: 1313 AKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFD 1372
K+GTPIC+P R+FIDIGRIASIENNHKPVD SN+EEQ KMFGRHFD
Sbjct: 1193 LKIGTPICVPGREFIDIGRIASIENNHKPVDYAKKGNKVAIKIVGSNAEEQ-KMFGRHFD 1251
Query: 1373 IEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
+EDELVSHISR+SID+LK+NYRD+LS++EW+L+VKLKN+FKIQ
Sbjct: 1252 MEDELVSHISRRSIDILKSNYRDELSLEEWKLVVKLKNIFKIQ 1294
|
|
| TAIR|locus:2030126 AT1G76820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2476 (876.7 bits), Expect = 3.9e-292, Sum P(5) = 3.9e-292
Identities = 476/598 (79%), Positives = 529/598 (88%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 876
++ E LRS ICCIMGHVD+GKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERT
Sbjct: 569 EEGGEKLRSIICCIMGHVDSGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERT 628
Query: 877 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
RELKA+A LKVPGLLVIDTPGHESFTNLRSRGS LCD+AILVVDI HGL+PQTIESLNLL
Sbjct: 629 RELKADAKLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDITHGLQPQTIESLNLL 688
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996
+MRNTEFI+ALNKVDRLYGWKTC+NAPIVKA+KQQN DV NEFN+RL +I+ + +EQG+N
Sbjct: 689 RMRNTEFIIALNKVDRLYGWKTCKNAPIVKAMKQQNKDVINEFNLRLKKIINEFQEQGLN 748
Query: 997 TELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVK 1056
TELYYKNKD GETF+IVPTSAISGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVK
Sbjct: 749 TELYYKNKDMGETFSIVPTSAISGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVK 808
Query: 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116
VIEGHGTTIDVVLVNG LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+
Sbjct: 809 VIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKE 868
Query: 1117 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1176
IKAAQGIKITAQGLEHAIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ
Sbjct: 869 IKAAQGIKITAQGLEHAIAGTSLHVVGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQ 928
Query: 1177 ASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVT 1236
STLGSLEALLEFLK+ AV IPVSGI IGPVHKKD+M+A VMLEKKKEYATILAFDVKVT
Sbjct: 929 TSTLGSLEALLEFLKTPAVNIPVSGIGIGPVHKKDIMKAGVMLEKKKEYATILAFDVKVT 988
Query: 1237 PEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVF 1296
EARELA+E+GVKIF ADIIY LF+QF YI N+ VFPCVL+ILPNCVF
Sbjct: 989 TEARELADEMGVKIFCADIIYQLFNQFQVYIENIKEEKKKESAGEAVFPCVLQILPNCVF 1048
Query: 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXX 1356
NK+DPI+LGV V +GI K+GTPIC+P R+F DIGRIASIENNHKPVD
Sbjct: 1049 NKRDPIILGVKVHDGILKIGTPICVPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKIV 1108
Query: 1357 XSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
SN EEQ KMFGRHFD+EDELVSHISR+SID+LKA+Y ++S ++W+LL+KLK +FKI
Sbjct: 1109 ASNREEQ-KMFGRHFDMEDELVSHISRRSIDILKADYMKEMSTEKWKLLLKLKRIFKI 1165
|
|
| TAIR|locus:2030041 AT1G76720 "AT1G76720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2303 (815.8 bits), Expect = 8.2e-275, Sum P(6) = 8.2e-275
Identities = 454/578 (78%), Positives = 498/578 (86%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT 876
K+ ENLRS ICCIMGHVD+GKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA+NIRERT
Sbjct: 620 KEGGENLRSIICCIMGHVDSGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAKNIRERT 679
Query: 877 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
RELKA+A LKVPGLLVIDTPGHESFTNLRSRGS LCD+AILVVDI HGLEPQTIESLNLL
Sbjct: 680 RELKADAKLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIKHGLEPQTIESLNLL 739
Query: 937 KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996
+MRNTEFI+ALNKVDRLYGWKTC+NAPIVKA+KQQN DV NEFN+RL I+TQ KEQG+N
Sbjct: 740 RMRNTEFIIALNKVDRLYGWKTCKNAPIVKAMKQQNKDVTNEFNIRLTDIITQFKEQGLN 799
Query: 997 TELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVK 1056
TE+YYKNK+ GETF+IVPTSA SGEG+PDLLL LVQW QKTMVEKLT+ +E+QCTVLEVK
Sbjct: 800 TEIYYKNKEMGETFSIVPTSAKSGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEVK 859
Query: 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116
VIEGHGTTIDVVLVNG LHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK+
Sbjct: 860 VIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKE 919
Query: 1117 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1176
IKAAQGIKITAQGLEHAIAGT L+VVGPDDD+E +KE AMEDM+SV+SRIDKSGEGV VQ
Sbjct: 920 IKAAQGIKITAQGLEHAIAGTSLHVVGPDDDIEAMKESAMEDMESVLSRIDKSGEGVYVQ 979
Query: 1177 ASTLGSLEALLEFLKSDAVKIPVS-GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKV 1235
STLGSLEALLEFLK+ AV IPVS G + G D ++KEYATILAFDVKV
Sbjct: 980 TSTLGSLEALLEFLKTPAVNIPVSEGYNEG---WSDA-------REEKEYATILAFDVKV 1029
Query: 1236 TPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCV 1295
T EARELA+E+GVKIF ADIIY LF+QF YI N+ VFPCVL+ILPNCV
Sbjct: 1030 TTEARELADEMGVKIFCADIIYQLFNQFQVYIENIKEEKKKESAGEAVFPCVLQILPNCV 1089
Query: 1296 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXX 1355
FNK+DPI+LGV V +GI K+GTPIC+P R+F DIGRIASIENNHKPVD
Sbjct: 1090 FNKRDPIILGVKVHDGILKIGTPICVPGREFTDIGRIASIENNHKPVDYAEKGDEVAIKI 1149
Query: 1356 XXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANY 1393
SN EEQ KMFGRHFD+EDELVSHISR+SID+LKA+Y
Sbjct: 1150 VASNREEQ-KMFGRHFDMEDELVSHISRRSIDILKADY 1186
|
|
| TAIR|locus:2199562 AT1G21160 "AT1G21160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2211 (783.4 bits), Expect = 5.4e-254, Sum P(6) = 5.4e-254
Identities = 433/645 (67%), Positives = 519/645 (80%)
Query: 777 KPAVAVKKAIPEQPLKSQDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDT 836
KP A KKA+P+ D TR ++ K+ EENLRSPICCIMGHVD+
Sbjct: 454 KPKTAAKKAMPKV-----DDTTRPKDTSKKDEGLVLNELAKEVEENLRSPICCIMGHVDS 508
Query: 837 GKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 896
GKTKLLDCIRGTNVQEGEAGGITQQIGAT+FPAENIRERT+EL+ANA LKVPG+LVIDTP
Sbjct: 509 GKTKLLDCIRGTNVQEGEAGGITQQIGATFFPAENIRERTKELQANAKLKVPGILVIDTP 568
Query: 897 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 956
GHESFTNLRSRGS LCD+AILVVDIM GLEPQTIESLNLL+ RN +FI+ALNKVDRLYGW
Sbjct: 569 GHESFTNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRNVKFIIALNKVDRLYGW 628
Query: 957 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 1016
+ +NAPI K + QQ DV EF MRL ++ Q +EQG+N+ LYYKN++ GET +I+P S
Sbjct: 629 EKSKNAPIRKTMMQQTGDVVKEFKMRLNRVQNQFQEQGLNSMLYYKNREMGETISILPAS 688
Query: 1017 AISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHE 1076
AISGEGIPDLLL LVQW QKTMVEKLT+ +++QCTVLEVKVIEGHG T+DVVLVNGVL E
Sbjct: 689 AISGEGIPDLLLFLVQWAQKTMVEKLTYVDKVQCTVLEVKVIEGHGITVDVVLVNGVLRE 748
Query: 1077 GDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAG 1136
GDQIVVCG QGPIVTTIR+LLTP+PM E+RV GTY+ H+++KAAQGIKI AQGLEHAIAG
Sbjct: 749 GDQIVVCGSQGPIVTTIRSLLTPYPMNEMRVTGTYMPHREVKAAQGIKIAAQGLEHAIAG 808
Query: 1137 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVK 1196
T L+V+GP++D+E+ K+ AMED++SVM+RIDKSGEGV VQASTLGSLEALLEFLKS VK
Sbjct: 809 TALHVIGPNEDMEEAKKNAMEDIESVMNRIDKSGEGVYVQASTLGSLEALLEFLKSSDVK 868
Query: 1197 IPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADII 1256
IPVSGI IGPVHKKD+M+A VMLEKKKE+ATILAFDVK++ EARELA+++GVKIF D I
Sbjct: 869 IPVSGIGIGPVHKKDIMKAGVMLEKKKEFATILAFDVKISAEARELADKMGVKIFCDDTI 928
Query: 1257 YHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVG 1316
Y LFD+F +YI + VFPC+L+ILPN ++N++DPI+LGV V +GI KVG
Sbjct: 929 YCLFDKFKSYIEGIKEEKKKETACEAVFPCILQILPNHIYNQRDPIILGVKVNDGILKVG 988
Query: 1317 TPICIPQRD-----FIDIGRIASIENNHK-PVDTXXXXXXXXXXXXXSNSEEQQKMFGRH 1370
TPICI +R F+DIGR++SI+NN+ PVD SN EEQ KMFGRH
Sbjct: 989 TPICIVKRIENVRVFMDIGRVSSIKNNNNMPVDYARKGQEVAIKIIASNPEEQ-KMFGRH 1047
Query: 1371 FDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415
F ++D L+SHIS +S+DV++ NY ++LS DE L+++LK +FKIQ
Sbjct: 1048 FGVDDRLISHISSRSVDVIRTNYWNELSNDEKDLVLRLKRIFKIQ 1092
|
|
| POMBASE|SPAC56F8.03 SPAC56F8.03 "translation initiation factor IF2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1808 (641.5 bits), Expect = 4.3e-196, Sum P(4) = 4.3e-196
Identities = 367/659 (55%), Positives = 469/659 (71%)
Query: 776 EKPAVAVKKAI----PEQPLKSQDAVTRXXXXXXXXXXXXVDATPKQA-------EENLR 824
E+P VA + E +KS DAV VD P+ A E +LR
Sbjct: 425 EEPEVAENNEVVTEKKETDIKS-DAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLR 483
Query: 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884
SPICCI+GHVDTGKTKLLD +R +NVQEGEAGGITQQIGATYFP E+I+++T+ +
Sbjct: 484 SPICCILGHVDTGKTKLLDNLRRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGK 543
Query: 885 LK--VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
L+ +PGLL+IDTPGHESFTNLRSRG+ LC+IAILV+DIMHGLEPQTIES+ LL+ + T
Sbjct: 544 LQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTP 603
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 1002
F+VALNKVDRLYGW + ++ I ++ +Q +Q EF R+ I+ QL EQG+N LY++
Sbjct: 604 FVVALNKVDRLYGWHSIKDNAIQDSLSKQKKAIQREFRDRVESIILQLNEQGLNAALYFE 663
Query: 1003 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062
NK+ G ++VPTSA SGEG+PDL+ LL+ TQ M +++ + L+CTVLEVKVIEG G
Sbjct: 664 NKNLGRYVSLVPTSAQSGEGVPDLVALLISLTQTRMSDRIKYITTLECTVLEVKVIEGLG 723
Query: 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122
TIDV+L NGVLHEGD+IV+CG+ GPI+TT+RALLTP P+KE+RVK Y+HHK+IKAA G
Sbjct: 724 ATIDVILSNGVLHEGDRIVLCGMGGPIITTVRALLTPQPLKEMRVKSAYVHHKEIKAAMG 783
Query: 1123 IKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGS 1182
+KI A LE A+AG+ L VVGPDDD ED+ EE MED+++++ RID SG GV VQASTLGS
Sbjct: 784 VKICANDLEKAVAGSRLLVVGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGS 843
Query: 1183 LEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEAREL 1242
LEALLEFLK +KIPV+ ++IGPV+KKDVMR + MLEK KEYA +L FDVKV +A +L
Sbjct: 844 LEALLEFLKQ--MKIPVASVNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDL 901
Query: 1243 AEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPI 1302
AE+LGVKIF A++IYHLFD FTA+ + VFPCVLK + FNK+DPI
Sbjct: 902 AEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPI 959
Query: 1303 VLGVDVVEGIAKVGTPIC----IPQRD--FIDIGRIASIENNHKPVDTXXXXXXXXXXXX 1356
+LGVDVVEG+ ++ TPI +P + I++GR+AS+E NHKPVD
Sbjct: 960 ILGVDVVEGVLRINTPIVAVKQLPNGEPQIIELGRVASLEMNHKPVDKVKKGQAGAGVAM 1019
Query: 1357 XSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK-ANYRDDLSMDEWRLLVKLKNLFKI 1414
S Q +FGR D L SHI+R+SID LK +RD++S DEW+L+++LK LF I
Sbjct: 1020 KLESSGSQILFGRQVTESDALYSHITRQSIDSLKDPAFRDEVSRDEWQLIIQLKKLFGI 1078
|
|
| ASPGD|ASPL0000017318 AN4038 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1753 (622.1 bits), Expect = 4.6e-187, Sum P(2) = 4.6e-187
Identities = 353/611 (57%), Positives = 441/611 (72%)
Query: 813 DATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI 872
+A ++++NLRSPICCI+GHVDTGKTKLLD IR TNVQEGEAGGITQQIGATYFP + +
Sbjct: 468 EALAARSKDNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVDAL 527
Query: 873 RERTRELKANATL--KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
R++T + + + K+PGLLVIDTPGHESF+NLRSRGS LC+IAILVVDIMHGLEPQT+
Sbjct: 528 RQKTAVVNKDGSFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTL 587
Query: 931 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL 990
ES+ LL+ R T FIVALNK+DRLYGWK N +++ Q+ VQNEF RL +
Sbjct: 588 ESMRLLRERRTPFIVALNKIDRLYGWKKIDNNGFQESLAMQSKGVQNEFRTRLERTKLLF 647
Query: 991 KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1050
EQG N+EL+Y+NK ++VPTSA +GEG+PD+L LL TQ+ M L + +E++C
Sbjct: 648 AEQGFNSELFYENKSMARNVSLVPTSAHTGEGVPDMLKLLTTLTQERMTNSLMYLSEVEC 707
Query: 1051 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110
TVLEVKVIEG GTTIDVVL NG+L EGD+IV+CGL GPI T IRALLTP P+KELR+K
Sbjct: 708 TVLEVKVIEGLGTTIDVVLSNGILREGDRIVLCGLNGPIATNIRALLTPAPLKELRLKSQ 767
Query: 1111 YLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSG 1170
Y+H+K++KAA G+KI A LEHAIAG+ L VVGPDDD ED++EE M D+++++S++ K
Sbjct: 768 YVHNKEVKAALGVKIAANDLEHAIAGSRLMVVGPDDDEEDIEEEVMSDLENLLSKVSKDQ 827
Query: 1171 EGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILA 1230
GV VQASTLGSLEALLEFL+ KIPV+ ISIGPV+K+DVM MLEK KEYA +L
Sbjct: 828 RGVSVQASTLGSLEALLEFLRVS--KIPVANISIGPVYKRDVMMCGTMLEKAKEYAVMLC 885
Query: 1231 FDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKI 1290
FDVKV EA+ A+++GVKIF ADIIYHLFD FT ++ L VFPCVLK
Sbjct: 886 FDVKVDKEAQAYADDVGVKIFTADIIYHLFDDFTKHMAELTERKKEEAKLLAVFPCVLKT 945
Query: 1291 LPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQ-------RDFIDIGRIASIENNHKPVD 1343
+ VFNKKDPIV+GVDVVEG ++ TPI + ++ +++GR+A IE +HKPV+
Sbjct: 946 V--AVFNKKDPIVIGVDVVEGSLRLHTPIAAIKTNATTGAKEVVELGRVAGIERDHKPVN 1003
Query: 1344 TXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWR 1403
+ Q M+GR + D L S ISR SID LK YR D+SMDEW
Sbjct: 1004 VVKRGQPSVAVKIEGAN---QPMYGRQLEESDTLYSQISRASIDTLKEFYRSDVSMDEWA 1060
Query: 1404 LLVKLKNLFKI 1414
L+ KLK +F I
Sbjct: 1061 LIKKLKPVFDI 1071
|
|
| FB|FBgn0026259 eIF5B "eIF5B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1657 (588.4 bits), Expect = 5.4e-187, Sum P(5) = 5.4e-187
Identities = 334/629 (53%), Positives = 431/629 (68%)
Query: 788 EQPLKSQDAVTRXXXXXXXXXXXXVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 847
E + + D +R +A K++ + LR+ + C++GHVDTGKTK+LD +R
Sbjct: 518 EVSVLANDPESRRLRAEARILKRQAEAEKKRSTDELRAGVVCVLGHVDTGKTKILDKLRR 577
Query: 848 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL--KVPGLLVIDTPGHESFTNLR 905
T+VQ+ EAGGITQQIGAT P E I+E+T+ +KA A ++PGLL+IDTPGHESF+NLR
Sbjct: 578 THVQDSEAGGITQQIGATNVPIEAIKEQTKYVKAAAGFEHRLPGLLIIDTPGHESFSNLR 637
Query: 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965
+RGS LCDIAILVVDIMHGLEPQTIES+ LLK + FIVALNK+DRLY WK +
Sbjct: 638 NRGSSLCDIAILVVDIMHGLEPQTIESIQLLKKKKCPFIVALNKIDRLYDWKQLARRDVR 697
Query: 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025
+K+Q ++ Q EF R ++ Q EQG+N L+Y+N D ++VPTSAISGEG+ +
Sbjct: 698 DVLKEQQSNTQLEFQQRTKDVILQFAEQGLNAALFYENTDPKTYISLVPTSAISGEGMGN 757
Query: 1026 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1085
LL ++ + Q + ++L + ELQ TVLEVK + G GTTID +L+NG L EG +VV G
Sbjct: 758 LLFMIADFCQNMLAKRLMYSEELQATVLEVKALPGLGTTIDAILINGKLREGQTMVVAGT 817
Query: 1086 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145
GPIVT IR+LL P PMKELRVK Y+ +K++KAAQG+KI A+ LE AIAG L +
Sbjct: 818 DGPIVTQIRSLLMPQPMKELRVKNAYVEYKEVKAAQGVKIAAKDLEKAIAGINLLIAHKP 877
Query: 1146 DDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIG 1205
D++E EE ++KS +S I + GV VQASTLGSLEALLEFL++ KIP S I IG
Sbjct: 878 DEVEICTEEVARELKSALSHIKLAQTGVHVQASTLGSLEALLEFLRTS--KIPYSAIRIG 935
Query: 1206 PVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1265
PV K+DVM+AS MLE + +YATILAFDVK+ EA+E+A+ LGVKIF ADIIYHLFD+FTA
Sbjct: 936 PVVKRDVMKASTMLEHEAQYATILAFDVKIEREAQEMADSLGVKIFQADIIYHLFDKFTA 995
Query: 1266 YINNLXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRD 1325
Y L VFPC L+ILP VFN +DPIV+GV V GI KVGTPIC+P ++
Sbjct: 996 YREELKQKKREEFRSVAVFPCKLRILPQFVFNSRDPIVMGVMVENGIVKVGTPICVPSKE 1055
Query: 1326 FIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKS 1385
F+DIG + SIE+NHK ++ E KMFGRHF+ +D L+S ISR+S
Sbjct: 1056 FVDIGIVTSIESNHKQIEFARKGQEICVKIDPIPGESP-KMFGRHFEADDMLISKISRQS 1114
Query: 1386 IDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
ID K +RDDL +W L+V+LK LF+I
Sbjct: 1115 IDACKDYFRDDLIKADWALMVELKKLFEI 1143
|
|
| UNIPROTKB|F1N6Y7 EIF5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1597 (567.2 bits), Expect = 2.8e-180, Sum P(5) = 2.8e-180
Identities = 314/596 (52%), Positives = 422/596 (70%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 627 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 686
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 687 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 746
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 747 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTRDEFEERAKAIIVEFAQQGLNAA 806
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 807 LFYENKDPRTFVSLVPTSAHTGDGMGSLICLLVELTQTMLSKRLAQCEELRAQVMEVKAL 866
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 867 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 926
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 927 AAQGVKILGKDLEKTLAGLPLLVAYKEDEVPVLKDELIHELKQTLNAIKLEEKGVYVQAS 986
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 987 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1044
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1045 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNS 1104
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEVNHKQVDVAKKGQEVCVKIEPI 1164
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KM+GRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1165 PGESP-KMYGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1219
|
|
| UNIPROTKB|J9P504 EIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1600 (568.3 bits), Expect = 9.5e-180, Sum P(5) = 9.5e-180
Identities = 314/596 (52%), Positives = 422/596 (70%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 626 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 685
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 686 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 745
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK ++ + +K+Q + ++EF R I+ + +QG+N
Sbjct: 746 KKCPFIVALNKIDRLYDWKKSPDSDVAATLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 805
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 806 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 865
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 866 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 925
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 926 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 985
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 986 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1043
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1044 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNS 1103
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD
Sbjct: 1104 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPI 1163
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KM+GRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1164 PGESP-KMYGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1218
|
|
| UNIPROTKB|I3L8K4 EIF5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1598 (567.6 bits), Expect = 9.5e-180, Sum P(5) = 9.5e-180
Identities = 314/596 (52%), Positives = 421/596 (70%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E LR+P+ C++GHVDTGKTK+LD +R T+VQ+GEAGGITQQIGAT P E I E+T+ +K
Sbjct: 626 EKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIK 685
Query: 881 A--NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
+++PG+L+IDTPGHESF+NLR+RGS LCDIAILVVDIMHGLEPQTIES+NLLK
Sbjct: 686 NFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKS 745
Query: 939 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ FIVALNK+DRLY WK + + +K+Q + ++EF R I+ + +QG+N
Sbjct: 746 KKCPFIVALNKIDRLYDWKKSPDTDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAA 805
Query: 999 LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1058
L+Y+NKD ++VPTSA +G+G+ L+ LLV+ TQ + ++L EL+ V+EVK +
Sbjct: 806 LFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKAL 865
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118
G GTTIDV+L+NG L EGD I+V G++GPIVT IR LL P PMKELRVK Y HK+++
Sbjct: 866 PGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVE 925
Query: 1119 AAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
AAQG+KI + LE +AG L V +D++ +K+E + ++K ++ I +GV VQAS
Sbjct: 926 AAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQAS 985
Query: 1179 TLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPE 1238
TLGSLEALLEFLK+ ++P +GI+IGPVHKKDVM+ASVMLE +YA ILAFDV++ +
Sbjct: 986 TLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERD 1043
Query: 1239 ARELAEELGVKIFIADIIYHLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFNK 1298
A+E+A+ LGV+IF A+IIYHLFD FT Y + VFPC +KILP +FN
Sbjct: 1044 AQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNS 1103
Query: 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXS 1358
+DPIV+GV V G K GTP+C+P ++F+DIG + SIE NHK VD
Sbjct: 1104 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEVNHKQVDVAKKGQEVCVKIEPI 1163
Query: 1359 NSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1414
E KM+GRHF+ D LVS ISR+SID LK +RD++ +W+L+V+LK +F+I
Sbjct: 1164 PGESP-KMYGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFEI 1218
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1415 | |||
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 0.0 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-145 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 1e-140 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 1e-130 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 1e-81 | |
| cd03703 | 110 | cd03703, aeIF5B_II, aeIF5B_II: This family represe | 5e-54 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-44 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 1e-43 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 3e-40 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 8e-40 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-27 | |
| pfam11987 | 109 | pfam11987, IF-2, Translation-initiation factor 2 | 5e-22 | |
| cd03701 | 95 | cd03701, IF2_IF5B_II, IF2_IF5B_II: This family rep | 9e-22 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-17 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-16 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 8e-15 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-14 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 7e-14 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-13 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 4e-12 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 1e-11 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 1e-10 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 2e-10 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 2e-10 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 3e-10 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 3e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-09 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-08 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 2e-08 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 2e-08 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 5e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-07 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 4e-07 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 4e-07 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 4e-07 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 5e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-06 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-06 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 2e-06 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 3e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 3e-06 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 3e-06 | |
| cd04163 | 168 | cd04163, Era, E | 3e-06 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 3e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 4e-06 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 4e-06 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 4e-06 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 4e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-06 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 5e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-06 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 8e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 1e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 1e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 1e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 2e-05 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 2e-05 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 2e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 3e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 3e-05 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 3e-05 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 3e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 3e-05 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 3e-05 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-05 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 5e-05 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 6e-05 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 6e-05 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 7e-05 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 9e-05 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-04 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-04 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 1e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 1e-04 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 1e-04 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 1e-04 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 1e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 2e-04 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 2e-04 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 2e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 2e-04 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 2e-04 | |
| PRK05703 | 424 | PRK05703, flhF, flagellar biosynthesis regulator F | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 3e-04 | |
| PRK13808 | 333 | PRK13808, PRK13808, adenylate kinase; Provisional | 3e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 3e-04 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 3e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 4e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 4e-04 | |
| PTZ00266 | 1021 | PTZ00266, PTZ00266, NIMA-related protein kinase; P | 4e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-04 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 5e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 6e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-04 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 6e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 6e-04 | |
| COG5258 | 527 | COG5258, GTPBP1, GTPase [General function predicti | 6e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 7e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 7e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 7e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 8e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 9e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 9e-04 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 9e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.001 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 0.001 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.001 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.001 | |
| pfam04935 | 206 | pfam04935, SURF6, Surfeit locus protein 6 | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| pfam06375 | 561 | pfam06375, BLVR, Bovine leukaemia virus receptor ( | 0.001 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.001 | |
| pfam14303 | 147 | pfam14303, NAM-associated, No apical meristem-asso | 0.001 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 0.001 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.002 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.002 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.002 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.002 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.002 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 0.002 | |
| cd03696 | 83 | cd03696, selB_II, selB_II: this subfamily represen | 0.002 | |
| pfam12569 | 516 | pfam12569, NARP1, NMDA receptor-regulated protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.002 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.003 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.003 | |
| PRK12329 | 449 | PRK12329, nusA, transcription elongation factor Nu | 0.003 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 0.003 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 0.003 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 0.003 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.004 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 | |
| COG1317 | 234 | COG1317, FliH, Flagellar biosynthesis/type III sec | 0.004 | |
| PRK05325 | 401 | PRK05325, PRK05325, hypothetical protein; Provisio | 0.004 | |
| pfam07111 | 739 | pfam07111, HCR, Alpha helical coiled-coil rod prot | 0.004 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 596 bits (1540), Expect = 0.0
Identities = 265/587 (45%), Positives = 366/587 (62%), Gaps = 19/587 (3%)
Query: 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL 879
E+ LR PI ++GHVD GKT LLD IRGT V EAGGITQ IGAT P + I + L
Sbjct: 1 EKKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPL 60
Query: 880 K--ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 937
K LK+PGLL IDTPGHE+FTNLR RG L DIAILVVDI G +PQTIE++N+LK
Sbjct: 61 KKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILK 120
Query: 938 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 997
R T F+VA NK+DR+ GWK+ +AP +++I++Q+ VQ E +L +++ QL E G +
Sbjct: 121 RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSA 180
Query: 998 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEV 1055
+ + + KD +T IVP SA +GEGIPDLL++L Q+ + E+L E + TVLEV
Sbjct: 181 DRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEV 240
Query: 1056 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHH 1114
K G GTTIDV+L +G L +GD IVV G GPIVT +RALL P P+ E+R + +
Sbjct: 241 KEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPV 300
Query: 1115 KQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVC 1174
++ AA G+KI+A LE A+AG+ L VV D+D+E+VKEE E+++ + RI+ EGV
Sbjct: 301 DEVVAAAGVKISAPDLEDALAGSPLRVV-RDEDVEEVKEEVEEEIEEI--RIETDEEGVV 357
Query: 1175 VQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVK 1234
V+A TLGSLEAL+ L+ + IP+ +G + K+DV+ AS + EK Y ILAF+VK
Sbjct: 358 VKADTLGSLEALVNELREE--GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVK 415
Query: 1235 VTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNC 1294
V P+A E AE+ VKIF D+IY L + + ++ KE +K + ++ V P ++ILP
Sbjct: 416 VLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGY 475
Query: 1295 VFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIK 1354
VF + DP ++GV+V+ G K G P+ + D +G I I++ + V AK G + AI
Sbjct: 476 VFRQSDPAIVGVEVLGGTIKPGVPLI--KEDGKRVGTIKQIQDQGENVKEAKAGMEVAIS 533
Query: 1355 IAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDE 1401
I G GR D L I + +L+ +D+LS DE
Sbjct: 534 IDG-------PTVGRQIKEGDILYVDIPEEHAKILEQELKDELSDDE 573
|
Length = 586 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 455 bits (1173), Expect = e-145
Identities = 233/595 (39%), Positives = 355/595 (59%), Gaps = 19/595 (3%)
Query: 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA 881
LRSPI ++GHVD GKT LLD IRG+ V + EAGGITQ IGAT P + I +L
Sbjct: 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLK 60
Query: 882 N--ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
LK+PGLL IDTPGHE+FTNLR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 61 KFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY 120
Query: 940 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 999
T F+VA NK+DR+ GW++ P +++ +Q VQ + ++ +V +L E+G E
Sbjct: 121 KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAER 180
Query: 1000 YYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKV 1057
+ + D +T I+P SAI+GEGIP+LL +L Q+ + E+L E + T+LEVK
Sbjct: 181 FDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240
Query: 1058 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK-Q 1116
G G TID V+ +G+L +GD I + G IVT +RALL P P++E+R +
Sbjct: 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDE 300
Query: 1117 IKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQ 1176
+ AA G+KI A GL+ +AG+ + VV D+++E VKEE +++++ + +ID EGV V+
Sbjct: 301 VVAAAGVKIAAPGLDDVMAGSPIRVV-TDEEIEKVKEEILKEVEEI--KIDTDEEGVVVK 357
Query: 1177 ASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVT 1236
A TLGSLEAL+ L+ V I + IG V K+DV+ A + ++ + Y I+AF+VKV
Sbjct: 358 ADTLGSLEALVNELRDMGVPIKKA--DIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVL 415
Query: 1237 PEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296
P A + ++ +K+F +IIY L ++F +I ++EEKKR+ + + P ++++P VF
Sbjct: 416 PGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475
Query: 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1356
+ P ++GV+V+ G+ + G P+ D +G + S+++ + V +A GQ+ AI I
Sbjct: 476 RQSKPAIVGVEVLTGVIRQGYPLMKD--DGETVGTVRSMQDKGENVKSASAGQEVAIAIK 533
Query: 1357 GSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1411
++GR D L + +LK DDL+ +E + K+ +
Sbjct: 534 DV-------VYGRTIHEGDTLYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAEI 581
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 439 bits (1131), Expect = e-140
Identities = 190/577 (32%), Positives = 266/577 (46%), Gaps = 80/577 (13%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
LR P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA P + I
Sbjct: 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---------- 52
Query: 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
K+PG+ IDTPGHE+FT +R+RG+ + DIAILVV G+ PQTIE++N K
Sbjct: 53 ---KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP 109
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 1002
+VA+NK+D+ A K + +L+E G+ E +
Sbjct: 110 IVVAINKIDKP-------EANPDK-------------------VKQELQEYGLVPEEWG- 142
Query: 1003 NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVIEG 1060
G+ VP SA +GEGI +LL L++ + V +L E + TV+EVK+ +G
Sbjct: 143 ----GDV-IFVPVSAKTGEGIDELLELILLLAE---VLELKANPEGPARGTVIEVKLDKG 194
Query: 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120
G V++ +G L +GD IV G G + T + L P L ++ AA
Sbjct: 195 LGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAA 254
Query: 1121 QGIKITAQGLEHAIAGTGLYVVG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQAS 1178
+ I + + A A L VV + K E E + + R + V ++A
Sbjct: 255 GDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKAD 314
Query: 1179 TLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKV 1235
T GSLEAL LK D VK+ + +G + + DVM A+ A I+ F+V+V
Sbjct: 315 TQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASD------AVIIGFNVRV 368
Query: 1236 TPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1295
PEAR LAE GVKI D+IY L + A + + E +K+E + LP
Sbjct: 369 DPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP--- 425
Query: 1296 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQKAAI 1353
K + G V EG+ K G P+ + RD + I G + S++ V +KGQ+ I
Sbjct: 426 ---KVGAIAGCMVTEGVIKRGAPVRV-VRDGVVIYEGEVESLKRFKDDVKEVRKGQECGI 481
Query: 1354 KIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK 1390
I R D L + LK
Sbjct: 482 AIEN----------YRDIKEGDILEVFEPVEVKRTLK 508
|
Length = 509 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-130
Identities = 224/568 (39%), Positives = 340/568 (59%), Gaps = 18/568 (3%)
Query: 839 TKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTP 896
T LLD IR T V + EAGGITQ IGAT P + I++ L A +K+PGLL IDTP
Sbjct: 475 TTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP 534
Query: 897 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 956
GHE+FT+LR RG L D+A+LVVDI G +PQTIE++N+L+ T F+VA NK+D + GW
Sbjct: 535 GHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGW 594
Query: 957 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 1016
+ P + +Q+ E ++L +++ +L E G + + + + +D T IVP S
Sbjct: 595 NISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVS 654
Query: 1017 AISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVIEGHGTTIDVVLVNGVL 1074
A +GEGIP+LL+++ QK + E+L E + T+LEVK +G GTTID ++ +G L
Sbjct: 655 AKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTL 714
Query: 1075 HEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV-KGTYLHHKQIKAAQGIKITAQGLEHA 1133
GD IVV G IVT +RALL P P+ E+R + + ++ AA G+KI A GLE
Sbjct: 715 RRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774
Query: 1134 IAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSD 1193
+AG+ + +V + +E KEE M++++ DK EG+ ++A TLGSLEAL L+
Sbjct: 775 LAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDK--EGILIKADTLGSLEALANELRKA 832
Query: 1194 AVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIA 1253
+ I + +G + KKDV+ A ++ Y IL F+VKV PEA+E AE+ GVKIF+
Sbjct: 833 GIPIKKA--EVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVD 890
Query: 1254 DIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIA 1313
+IIY L + +T ++ +E+KKRE ++ + P ++++LP+C+F + +P ++GV+V+EG
Sbjct: 891 NIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPAIVGVEVLEGTL 950
Query: 1314 KVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1373
+VG + + D + +G + SI++ + V AK G+ AI I G+ + GRH D
Sbjct: 951 RVGVTLI--KEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDE 1001
Query: 1374 EDELVSHISRKSIDVLKANYRDDLSMDE 1401
+ L + + L Y D L DE
Sbjct: 1002 GETLYVDVPESHVRELYHKYMDRLRDDE 1029
|
Length = 1049 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 1e-81
Identities = 85/211 (40%), Positives = 113/211 (53%), Gaps = 43/211 (20%)
Query: 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 885
P+ +MGHVD GKT LLD IR TNV GEAGGITQ IGA P + +
Sbjct: 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPID--------------V 46
Query: 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945
K+PG+ IDTPGHE+FTN+R+RG+ + DIAILVV G+ PQTIE++N K N IV
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 946 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 1005
A+NK+D+ YG R+ +++L G ++
Sbjct: 107 AINKIDKPYG--------------------TEADPERVKNELSELGLVG---------EE 137
Query: 1006 RGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036
G +IVP SA +GEGI DLL ++ +
Sbjct: 138 WGGDVSIVPISAKTGEGIDDLLEAILLLAEV 168
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|239674 cd03703, aeIF5B_II, aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 5e-54
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRV 1107
LQ TVLEVK EG GTTIDV+L +G L EGD IVVCGL GPIVT +RALL P P+KELRV
Sbjct: 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRV 60
Query: 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAME 1157
K ++H K++KAA G+KI A LE AIAG+ L VVGP+D++E++KEE ME
Sbjct: 61 KSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEVME 110
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. Length = 110 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-44
Identities = 159/516 (30%), Positives = 226/516 (43%), Gaps = 139/516 (26%)
Query: 805 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA 864
K D + R P+ IMGHVD GKT LLD IR TNV GEAGGITQ IGA
Sbjct: 231 VKLVSLLEDDDEEDLVP--RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGA 288
Query: 865 TYFPAENIRERTRELKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIM 922
Y ++ G + +DTPGHE+FT +R+RG+ + DI +LVV
Sbjct: 289 -Y-----------------QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAAD 330
Query: 923 HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
G+ PQTIE++N K IVA+NK+D+ +
Sbjct: 331 DGVMPQTIEAINHAKAAGVPIIVAINKIDK------------------PGANPDR----- 367
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE 1040
+ +L E G+ E + G+T VP SA +GEGI +LL +LL E
Sbjct: 368 ---VKQELSEYGLVPEEW-----GGDTI-FVPVSAKTGEGIDELLEAILLQ-------AE 411
Query: 1041 KLTFRNELQC--------TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1092
L EL+ TV+E K+ +G G V++ NG L GD IVV G TT
Sbjct: 412 VL----ELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGD-IVVAG------TT 460
Query: 1093 ---IRALLTPHPMKELRVKGTYLHHKQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD 1147
+RA++ + K++K A + GL AG VV +D
Sbjct: 461 YGRVRAMVDD-------------NGKRVKEAGPSTPVEILGLSGVPQAGDEFVVV---ED 504
Query: 1148 LEDVKEEA-------------------MEDMKSVMSRIDKSGEG----VCVQASTLGSLE 1184
+ +E A +E++ M K GE + ++A GS+E
Sbjct: 505 EKKAREIAEYRQEKAREKKLARQQRVSLENLFEQM----KEGEVKELNLIIKADVQGSVE 560
Query: 1185 AL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARE 1241
AL LE L +D VK+ + +G + + DV A+ A I+ F+V+ +AR+
Sbjct: 561 ALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARK 614
Query: 1242 LAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE 1277
LAE+ GV I IIY L D A ++ + E + E
Sbjct: 615 LAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEE 650
|
Length = 746 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-43
Identities = 161/565 (28%), Positives = 253/565 (44%), Gaps = 113/565 (20%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
R P+ IMGHVD GKT LLD IR T V +GEAGGITQ IGA + E+ + T
Sbjct: 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMIT------- 138
Query: 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 943
+DTPGHE+FT++R+RG+ + DI +LVV G+ PQTIE+++ K N
Sbjct: 139 --------FLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI 190
Query: 944 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN 1003
IVA+NK+D+ + N D ++ +L E G+ E +
Sbjct: 191 IVAINKIDK----------------PEANPD----------RVKQELSEYGLVPEDW--- 221
Query: 1004 KDRGETFNIVPTSAISGEGIPDLL-LLLVQWTQKTMVEKLTFRNELQC--TVLEVKVIEG 1060
G+T VP SA++G+GI +LL ++L+Q + VE+L Q V+E ++ +G
Sbjct: 222 --GGDTI-FVPVSALTGDGIDELLDMILLQ----SEVEELKANPNGQASGVVIEAQLDKG 274
Query: 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120
G V++ +G L GD +VV G +RA++ G + K+ +
Sbjct: 275 RGPVATVLVQSGTLRVGDIVVV----GAAYGRVRAMIDE--------NGKSV--KEAGPS 320
Query: 1121 QGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEE----------------AMEDMKSVMS 1164
+ ++I + AG V + D V E+ ++++ +
Sbjct: 321 KPVEILGLS-DVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIK 379
Query: 1165 RIDKSGEGVCVQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEK 1221
+ + ++A GSLEA+ LE L ++ VK+ V +G + + D+ AS
Sbjct: 380 EGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASA---- 435
Query: 1222 KKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL-----KEEKKR 1276
A I+ F+V+ A+ +AE V I +IY L D+ A + + +EE
Sbjct: 436 --SNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIG 493
Query: 1277 EAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDI--GRIAS 1334
+A VF K + G V EG+ K G P+ + RD + I G I S
Sbjct: 494 QAEVRQVF-----------NVPKIGNIAGCYVTEGVIKRGNPLRV-IRDGVVIFEGEIDS 541
Query: 1335 IENNHKPVDTAKKGQKAAIKIAGSN 1359
++ V G + I I N
Sbjct: 542 LKRFKDDVKEVSNGYECGIGIKNYN 566
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-40
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 62/226 (27%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRG----------------TNVQEGEAGGITQQIGATYF 867
R I+GHVD GKT L D + ++E GIT +I A F
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 868 PAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP 927
+ + +IDTPGH FT RG+ D AILVVD + G+ P
Sbjct: 62 ETKKRL----------------INIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMP 105
Query: 928 QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987
QT E L L K IV +NK+DR+ E +V
Sbjct: 106 QTREHLLLAKTLGVPIIVFINKIDRVDD---------------------AELEE----VV 140
Query: 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033
++ + + + GET +VP SA++GEGI +LL L +
Sbjct: 141 EEISRELLEKYGF-----GGETVPVVPGSALTGEGIDELLEALDLY 181
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 8e-40
Identities = 138/519 (26%), Positives = 222/519 (42%), Gaps = 102/519 (19%)
Query: 796 AVTRKKEPAAKSKEPEVDATPKQAEENL-RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE 854
+ +++ K +D T E ++ R PI I+GHVD GKT LLD IR T + + E
Sbjct: 214 NIISEEKNNINEKTSNLDNTSAFTENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE 273
Query: 855 AGGITQQIGA--TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 912
AGGITQ+IGA F ++ ++ ++ +DTPGHE+F+++RSRG+ +
Sbjct: 274 AGGITQKIGAYEVEFEYKDENQK--------------IVFLDTPGHEAFSSMRSRGANVT 319
Query: 913 DIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972
DIAIL++ G++PQTIE++N ++ N IVA+NK+D+ N
Sbjct: 320 DIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDK----------------ANAN 363
Query: 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032
T+ +I QL + + E G ++P SA G I LL ++
Sbjct: 364 TE----------RIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETIL- 406
Query: 1033 WTQKTMVEKLTFR----NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP 1088
+ E + Q +LE + + G +++ NG LH GD IV
Sbjct: 407 ----LLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIV------- 455
Query: 1089 IVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA-GTGLYVVGPDDD 1147
++R L +K A + GL A G V + +
Sbjct: 456 ---------IGTSYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKE 506
Query: 1148 -LEDVKEEAMEDMKSVMSRI------------DKSGEGVCVQASTLGSLEALLEFL---K 1191
+ + + K RI +K + ++ T GS+EA++ +
Sbjct: 507 AKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIP 566
Query: 1192 SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIF 1251
V++ + S+G V + DV AS A ILAF+ + P A++ A +L + I
Sbjct: 567 QKKVQLNILYASLGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIK 620
Query: 1252 IADIIYHLFDQFTAYINNLK--EEKKR---EAADEAVFP 1285
+IY L + A + +L E KK EA + VFP
Sbjct: 621 EYQVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFP 659
|
Length = 742 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 62/207 (29%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
++GHVD GKT L + G ++ E R T + + P
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDR-RGTRKETFLDTLKEERERGITIKTGV-VEFEWP 60
Query: 889 GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ IDTPGHE F+ RG D A+LVVD G+EPQT E LN+ IVA
Sbjct: 61 KRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVA 120
Query: 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 1006
+NK+DR+ + +F+ L +I LK G +
Sbjct: 121 VNKIDRV---------------------GEEDFDEVLREIKELLKLIG-------FTFLK 152
Query: 1007 GETFNIVPTSAISGEGIPDLLLLLVQW 1033
G+ I+P SA++GEGI +LL +V+
Sbjct: 153 GKDVPIIPISALTGEGIEELLDAIVEH 179
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|221359 pfam11987, IF-2, Translation-initiation factor 2 | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 5e-22
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 1156 MEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDV 1212
+ED+ + + + ++A GSLEA+ + L+ +D VK+ + +G + + DV
Sbjct: 3 LEDLFEQIKEGEVKELNLILKADVQGSLEAIKDSLEKLSTDEVKVNIIHAGVGAITESDV 62
Query: 1213 MRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTA 1265
M AS A I+ F+V+ +AR+LAE+ GV I IIY L D A
Sbjct: 63 MLASAS------NAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKA 109
|
IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyzes the hydrolysis of GTP following initiation-complex formation. Length = 109 |
| >gnl|CDD|239672 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 9e-22
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR----ALLTPHPMKE 1104
+ TV+E K+ +G G V++ NG L +GD IV G G I T + ALL P
Sbjct: 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTP 61
Query: 1105 LRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1141
+ + KA G+ + A E G+ V
Sbjct: 62 VEI---LGLKDVPKAGDGVLVVASEKEAKEIGSYRLV 95
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. Length = 95 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (217), Expect = 3e-17
Identities = 109/501 (21%), Positives = 209/501 (41%), Gaps = 36/501 (7%)
Query: 227 EDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSN 286
E+K + DE ++ KK+ ++ K + + E+ + E +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 287 KGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEE 346
+ + E+ K + +E + KKK + KK + ++
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 347 NVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVN---KGEVVAQTSKNKKK-----KK 398
E + A + K+++ ++ + K K E + ++ KK KK
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 399 EKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEE 458
+E +++ ++ ++ +K E + E K + + ADE EE ++
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Query: 459 SAASKKKKKKKEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEKKMSKQVREM 517
+ +KK ++KK+ ++ KKA AE+K++ +++ E KN K E K +++ R
Sbjct: 1536 ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
Query: 518 QEALARRKE----AEERKKREEE----ERLRKEEEERKRLEELERQAEEAKRR----KKE 565
+ +E AEE KK EE E L+K EEE+K++E+L+++ E K++ KK
Sbjct: 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
Query: 566 KEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
+E+ K +K +E K K +E+ ++ E + + KEA + + KKK
Sbjct: 1656 EEENK-IKAAEEAK----KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Query: 626 SAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV-------EEKP 678
A + K + + E+ K+E + E K +E E + E+K
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
Query: 679 EIADAPKENEVEEEDDDDDEE 699
E KE +EEE D++DE+
Sbjct: 1771 EEIRKEKEAVIEEELDEEDEK 1791
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (206), Expect = 7e-16
Identities = 110/483 (22%), Positives = 226/483 (46%), Gaps = 18/483 (3%)
Query: 261 ENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPII 320
E E K + +E D KK + + + A D+ E ++ E
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 321 FTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFK 380
+ KKK ++KK + ++ ED ++ A K+++ ++ + K
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Query: 381 VNKGEVVAQTSK--NKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPP 438
++ + A+ +K ++ KKK +E ++E ++ ++ +K A+ + A + +K
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK--ADEAKKKAEEAKKADEAKK 1490
Query: 439 EPVAPPDAADE-KVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED--KQQGKSEAVE 495
+ ADE K E K+++ +KK ++ K+ ++ KKA A A++ K + K +A E
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Query: 496 TKKNDGKSKGPEKKMSKQVREMQE----ALARRKEAEERKKREEEERLRKEEEERKRLEE 551
KK + K EKK +++ ++ +E AL + +EA++ ++ EE ++ EEE+K E
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
Query: 552 LERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDK 611
++AEEAK + +E +K + KKK E L K+ EE ++ E ++ I K
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQ--LKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
Query: 612 EAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGES 671
+A + K + KK+ + ++++ + +E +K E L + + E +K EE +
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKK-----AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 672 LTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKK 731
E K + +A KE E +++ ++ ++ + + +L + EE E E ++++
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Query: 732 EIK 734
E+
Sbjct: 1784 ELD 1786
|
Length = 2084 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 8e-15
Identities = 65/262 (24%), Positives = 97/262 (37%), Gaps = 54/262 (20%)
Query: 832 GHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
GHVD GKT LL + G E + G+T +G YFP +
Sbjct: 7 GHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------------YRL 52
Query: 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 947
G ID PGHE F + G G D A+LVVD G+ QT E L +L + IV +
Sbjct: 53 GF--IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
K DR+ N + M + QI L
Sbjct: 111 TKADRV------------------NEEEIKRTEMFMKQI---LNSYIFLKNA-------- 141
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDV 1067
I TSA +G+GI +L L + ++ + L+ + ++G GT +
Sbjct: 142 ---KIFKTSAKTGQGIGELKKELKNLLES--LDIKRIQKPLRMAIDRAFKVKGAGTVVTG 196
Query: 1068 VLVNGVLHEGDQIVVCGLQGPI 1089
+G + GD + + + +
Sbjct: 197 TAFSGEVKVGDNLRLLPINHEV 218
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (191), Expect = 4e-14
Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 18/328 (5%)
Query: 383 KGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE---LGQGPAPQEEKVQVQPPE 439
K E V + + KK +E +K ER +E E+ Q EE + +
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKN 499
ADE EEK+++ +KKK ++ +K E K A A + K +A E KK
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER------KRLEELE 553
+K + + + +E ++ +E K++ + +K EE++ K+ EE +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 554 RQAEEAKRRKKEKEKEKLLKKKQEGKLLT---GKQKEEARRLEAMRNQF----LAKGIPL 606
++A+E K+ K+K KKK E K K+ EEA++ + + + A+
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 607 PTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKV 666
+ + A + K + K A A K+ + E+K+ + K++ E +K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
Query: 667 EEGESLTVEEKPEIADAPKENEVEEEDD 694
+E + EE + +A K E ++ D+
Sbjct: 1525 DEAKK--AEEAKKADEAKKAEEKKKADE 1550
|
Length = 2084 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-14
Identities = 54/199 (27%), Positives = 76/199 (38%), Gaps = 52/199 (26%)
Query: 832 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
GH+D GKT L+ + G + E + GIT +G Y L L
Sbjct: 6 GHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD----------LPDGKRLGF- 54
Query: 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVAL 947
ID PGHE F G+G D +LVV G+ PQT E L +L+ + + +V L
Sbjct: 55 ----IDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKGLVVL 110
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
K D V + RL + ++ E T L
Sbjct: 111 TKADL----------------------VDED---RLELVEEEILELLAGTFL-------- 137
Query: 1008 ETFNIVPTSAISGEGIPDL 1026
I P S+++GEGI +L
Sbjct: 138 ADAPIFPVSSVTGEGIEEL 156
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (184), Expect = 2e-13
Identities = 145/664 (21%), Positives = 288/664 (43%), Gaps = 57/664 (8%)
Query: 44 EEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGG 103
E + +E +KKK + + + + D++K + E A+ KKK++ K
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA----KKKAEEAKKKA 1331
Query: 104 NNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAA 163
+ A K+ + + + D+ + + A++ K +E KK
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA----------- 1380
Query: 164 AFDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDE 223
DA +E E D + +++++D E K KK + DE +
Sbjct: 1381 --DAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 224 DVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKK 283
E+ + DE ++ KK++++ K + E E K + +E + KK
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAE-------EAKKADEAKKKAEEAKKADEAKK 1490
Query: 284 KSNKGGRMRSSAFDLLENEDEDDDEKK-DKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVL 342
K+ + + A E + + D+ KK ++ ++ + ++ KK +KK
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA-------- 1542
Query: 343 LDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNK-----KKK 397
+E+ ++ ++ A + K+ E + + K E + + + K
Sbjct: 1543 -EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
Query: 398 KEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKE 457
+E++K ++E + E+ KI AE + +EEK +V+ + + + ++ +E
Sbjct: 1602 EEEKKMKAEEAKKAEE--AKIKAE--ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
E+ ++ KK +E +KKA A AE+ ++ +EA+ K + E K ++++++
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL-------KKEAEEAKKAEELKKK 1710
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
+ +K+AEE KK EEE K EE +K EE +++AEEAK+ ++EK+K LKK++E
Sbjct: 1711 EAE--EKKKAEELKK-AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPL 637
K ++++EA E + + + + + K+ K + N + +
Sbjct: 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM 1827
Query: 638 KEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDD 697
EDS KE K L E D E K + + E+ + AD KE +++E+D+++
Sbjct: 1828 -EDS-AIKEVADSKNMQLEEADAFEKHKFNK-NNENGEDGNKEADFNKEKDLKEDDEEEI 1884
Query: 698 EEWD 701
EE D
Sbjct: 1885 EEAD 1888
|
Length = 2084 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 54/219 (24%)
Query: 832 GHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
GHVD GKT LL I G N + E + G+T +G Y+P + R V
Sbjct: 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR-------------VL 53
Query: 889 GLLVIDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVA 946
G ID PGHE F +N+ + G G D A+LVV G+ QT E L +L++ N VA
Sbjct: 54 GF--IDVPGHEKFLSNMLA-GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVA 110
Query: 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 1006
L K DR+ + + +++ Q+ L+E G
Sbjct: 111 LTKADRV-------DEARIAEVRR--------------QVKAVLREYGF----------- 138
Query: 1007 GETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1045
+ T+A G GI L L+Q ++ + FR
Sbjct: 139 -AEAKLFVTAATEGRGIDALREHLLQLPEREHAAQHRFR 176
|
Length = 614 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 58/216 (26%), Positives = 80/216 (37%), Gaps = 67/216 (31%)
Query: 829 CIMGHVDTGKTKLLDCI---------RGTNVQ-------EGEAGGITQQIGATYFPAENI 872
I+ H+D GK+ L D + R Q E E G IT I
Sbjct: 4 SIIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERG-IT------------I 50
Query: 873 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 931
+ + L A LL +IDTPGH F+ SR C+ A+LVVD G+E QT+
Sbjct: 51 KAQAVRLFYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLA 110
Query: 932 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991
+ L N E I +NK+D A +KQ+ DV
Sbjct: 111 NFYLALENNLEIIPVINKID-------LPAAD-PDRVKQEIEDV---------------- 146
Query: 992 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 1027
G++ + SA +G G+ DLL
Sbjct: 147 -LGLDAS------------EAILVSAKTGLGVEDLL 169
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-10
Identities = 73/335 (21%), Positives = 128/335 (38%), Gaps = 47/335 (14%)
Query: 419 LAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA 478
L +L +G + E + E P A+ + GEE E+ + + K E E E +
Sbjct: 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 479 AAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEER 538
A E + +G+ EA E KG + + EA E E E EE
Sbjct: 687 AERKGEQEGEGEIEAKE-----ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
+ E E + E+E + + + + + + + + + EG++ G+ E
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM---------- 791
Query: 599 FLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
GD+ A K + + G + D E K+ E +QE E
Sbjct: 792 ---------KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKD-ETGEQELNAE- 840
Query: 659 DVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDD 718
+ GE ++ E+G V+ E E EEE+++++EE + + ++
Sbjct: 841 NQGEAKQDEKG----VDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE------------EE 884
Query: 719 EEADSEPEPLVKKEIKSAIPSPRDAGEVYCFILPL 753
EE + EPL + P R +Y F+LP+
Sbjct: 885 EEEEENEEPLSLE-----WPETRQKQAIYLFLLPI 914
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-10
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--------YFPAENIRERTRELK 880
I+ H+D GKT L + I GI +IG + E +ER +
Sbjct: 14 GIVAHIDAGKTTLTERI-------LFYTGIISKIGEVHDGAATMDWMEQE--QERGITIT 64
Query: 881 ANAT---LKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL 936
+ AT K + +IDTPGH FT R + D A++VVD + G+EPQT
Sbjct: 65 SAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA 124
Query: 937 KMRNTEFIVALNKVDRL 953
I+ +NK+DRL
Sbjct: 125 DKYGVPRILFVNKMDRL 141
|
Length = 697 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 44/207 (21%)
Query: 830 IMGHVDTGKTKLLDCIRGT--------NVQEGEAGGITQQIG--ATYFPAENIRERTREL 879
++GHVD+GKT L + N Q E G IT +G + E +
Sbjct: 5 LLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG-ITLDLGFSSFEVDKPKHLE---DN 60
Query: 880 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
+ LV D PGH S G+ + D+ +LVVD G++ QT E L + ++
Sbjct: 61 ENPQIENYQITLV-DCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLVIGELL 119
Query: 940 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 999
IV LNK+D + + R +K Q+
Sbjct: 120 CKPLIVVLNKIDLIPEEERKRKIEKMKKRLQKTL-------------------------- 153
Query: 1000 YYKNKDRGETFNIVPTSAISGEGIPDL 1026
K R + I+P SA GEG +L
Sbjct: 154 ---EKTRLKDSPIIPVSAKPGEGEAEL 177
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 48/218 (22%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-----YFPAENIRERT------- 876
CI+ HVD GKT L D + + G I++++ E R T
Sbjct: 4 CIIAHVDHGKTTLSDSLLASA------GIISEKLAGKARYLDTREDEQERGITIKSSAIS 57
Query: 877 --RELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 933
E + L+ +ID+PGH F++ + L D A++VVD + G+ QT L
Sbjct: 58 LYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVL 117
Query: 934 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK-- 991
+ ++ +NK+DRL I + + + RL++IV +
Sbjct: 118 RQALEERVKPVLVINKIDRL--------------ILELKLSPEEAYQ-RLLRIVEDVNAI 162
Query: 992 ------EQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023
E+ + + +G N+ SA+ G G
Sbjct: 163 IETYAPEEFKQEKWKFS-PQKG---NVAFGSALDGWGF 196
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-10
Identities = 53/200 (26%), Positives = 72/200 (36%), Gaps = 56/200 (28%)
Query: 831 MGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
GH+D GKT LL + G + E + GIT +G Y E+
Sbjct: 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGV-------------- 51
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVA 946
+ ID PGH F + G G D A+LVV GL QT E L +L + + I+
Sbjct: 52 --MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIV 109
Query: 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 1006
L K DR+ R+ Q + Q+ L
Sbjct: 110 LTKADRVD-------------------------EARIEQKIKQILAD---LSL------- 134
Query: 1007 GETFNIVPTSAISGEGIPDL 1026
I TSA +G GI +L
Sbjct: 135 -ANAKIFKTSAKTGRGIEEL 153
|
Length = 447 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAG-GITQQIGATYFPAENIRERTRELKANATLKVP 888
I+G + GK+ LL+ + G + E G T+ I E + K N
Sbjct: 6 IVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYV-----TTVIEEDGKTYKFN------ 54
Query: 889 GLLVIDTPGHESFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 941
++DT G E + +R + DI ILV+D+ LE QT E ++ +
Sbjct: 55 ---LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-GV 110
Query: 942 EFIVALNKVD 951
I+ NK+D
Sbjct: 111 PIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 3e-09
Identities = 108/497 (21%), Positives = 207/497 (41%), Gaps = 31/497 (6%)
Query: 262 NDDVKEDKDEDDEPITFTDKKKKSNKG--GRMRSSAFDLLENEDEDDDEKKDKDEEDEPI 319
NDDV ++KD DE I + K K G+ L + + D + K+ + DE
Sbjct: 1038 NDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEG----LKPSYKDFDFDAKEDNRADEA- 1092
Query: 320 IFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDF 379
+ K + +KKT + +E E + A D A + ++ E+
Sbjct: 1093 -TEEAFGKAEEAKKTETGKAEEARKAEEAKKKA---EDARKAEEARKAEDARKAEEARKA 1148
Query: 380 KVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPE 439
+ K +A+ +++ +K +E K + A+ E++ A K +
Sbjct: 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE----- 1203
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKN 499
A A +E+ EE ++ A K + KK +E +K A A AE+++ +E + +
Sbjct: 1204 --AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERN--NEEIRKFEE 1259
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERK----KREEEER----LRKEEEERKRLEE 551
+ ++ + + E ++A +K E++K K+ EE++ +K+ EE K+ +E
Sbjct: 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
Query: 552 LERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDK 611
+++AEEAK +K + K+K + K+ + + + A EA + A K
Sbjct: 1320 AKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 612 EAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGES 671
+A + + K + KKK+ + K+ K +K+ + E +K +E +
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Query: 672 LTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKK 731
E K K E ++ ++ + +AK D+ + A +EA + E KK
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Query: 732 --EIKSAIPSPRDAGEV 746
E K A + + A E
Sbjct: 1499 ADEAKKAAEAKKKADEA 1515
|
Length = 2084 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 34/184 (18%), Positives = 77/184 (41%), Gaps = 2/184 (1%)
Query: 420 AELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
+ Q P +K Q + + + A+++ E+ + ++ +K ++ ++AA
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
A + KQ +++A + + K++ +K +K+ + Q + +A K++ E
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
+K E E K E + +A+ + + K + + K E + A EA R
Sbjct: 173 KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA--KAAAEAAAKAEAEAAAAAAAEAERKAD 230
Query: 600 LAKG 603
A+
Sbjct: 231 EAEL 234
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA-TLKV 887
CI GH+ GKT LLD + + + + + ++ +ER +K+N +L +
Sbjct: 4 CIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLVL 63
Query: 888 PG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+ +IDTPGH +F + + LCD +LVVD++ GL T +
Sbjct: 64 EDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQEG 123
Query: 941 TEFIVALNKVDRL 953
++ +NK+DRL
Sbjct: 124 LPMVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 16/133 (12%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 885
I+ H+D GK+ L D + ++ G I++ ++ + ++ RER +KA A L
Sbjct: 7 SIIAHIDHGKSTLADRL----LEY--TGAISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 886 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
L +IDTPGH F+ SR C+ A+L+VD G+E QT+ ++ L
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120
Query: 939 RNTEFIVALNKVD 951
+ E I +NK+D
Sbjct: 121 NDLEIIPVINKID 133
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-08
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA--- 883
I+ H+D GK+ L D + ++ GG+++ ++ A + +I RER +KA A
Sbjct: 13 SIIAHIDHGKSTLADRL----LEL--TGGLSEREMRAQVLDSMDIERERGITIKAQAVRL 66
Query: 884 TLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
K L +IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L
Sbjct: 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 126
Query: 939 RNTEFIVALNKVD 951
N E I LNK+D
Sbjct: 127 NNLEIIPVLNKID 139
|
Length = 603 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-07
Identities = 76/318 (23%), Positives = 146/318 (45%), Gaps = 34/318 (10%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A SK K+++KE E+ + ERT + D LE IL EL + Q + ++ Q + A
Sbjct: 165 AGISKYKERRKETER-KLERTRENLDRLEDILNELER----QLKSLERQ-------AEKA 212
Query: 448 D---EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQ---QGKSEAVETKKNDG 501
+ E E + E A + ++ +E E+ AE++ + + +E K +
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
Query: 502 KSKGPEKKMSKQVREMQEAL------ARRKEAEERKKREEEERLRKEEEERK-RLEELER 554
+ + E + +++ E+Q+ L R E +++ RE L ++ EE + +LEELE
Sbjct: 273 RLEVSE--LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
+ +E E E EKL + K+E + L + +E LE + ++ L +
Sbjct: 331 KLDELAEELAELE-EKLEELKEELESLEAELEELEAELEELESRLEE----LEEQLETLR 385
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
SK + + + S +++ E + +E+ Q++ E LL E +++E ++
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELE 443
Query: 675 EEKPEIADAPKENEVEEE 692
E + E+ + +E E EE
Sbjct: 444 ELEEELEELQEELERLEE 461
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM-QEALA 522
++K K E+++K AE+ QQ ++ E K K + ++ KQ E ++A
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK---KKQEGK 579
++K+AEE + K E E KR ++A ++K E E K KK+
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Query: 580 LLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
K EA++ + A EA + K + K+A +A
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
|
Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
G Q+ Q +P A + +K E++ EE+ + ++ ++KE E++AAA AA
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ +Q +A E +K Q A+ K+A E K + E E +K +
Sbjct: 105 KQAEQAAKQAEEKQK-------------------QAEEAKAKQAAEAKAKAEAEAEKKAK 145
Query: 544 EERKRLEELERQ---AEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL 600
EE K+ E E + A EAK++ E +K+ + K + K K E + +A +
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK-AEAKAKAKAEEAKAKAEAAKAK 204
Query: 601 AKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIE-SKEKEQEKQE 653
A EAA+K +A + D + EKQ
Sbjct: 205 A--------AAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQG 250
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 429 QEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQ 488
+++K Q Q E A E++ + EKE AA ++KK+ +E K+ A E +
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Query: 489 GKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKR 548
+ A K + + A A +K A E KK+ E E +K E K+
Sbjct: 141 AAAAA---------------KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Query: 549 LEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
E E A+ A KK+ E E K E K
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216
|
Length = 387 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
++DTPGHE F+ R D A++V+D G+EPQT + + ++R I +NK+D
Sbjct: 75 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLD 134
Query: 952 R 952
R
Sbjct: 135 R 135
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 69/316 (21%), Positives = 114/316 (36%), Gaps = 68/316 (21%)
Query: 828 CCIMGHVDTGKTKLL-----DC--IRGTNVQEGEAGGITQQIGATYF-------PAENIR 873
+GHVD GK+ L+ D I +++ E + F E R
Sbjct: 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEE--R 67
Query: 874 ER--TRELK-ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD-------IMH 923
ER T ++ + +ID PGH F G+ D+A+LVVD
Sbjct: 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF 127
Query: 924 GLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982
G+ QT E L + + IVA+NK+D L W + F
Sbjct: 128 GVGGQTREHAFLARTLGIKQLIVAVNKMD-LVSWD------------------EERFEE- 167
Query: 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
+V V++L + + Y KD +P S G+ + + + T++E L
Sbjct: 168 IVSEVSKLLKM-----VGYNPKD----VPFIPISGFKGDNLTKKSENMPWYKGPTLLEAL 218
Query: 1043 --------TFRNELQCTVLEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTI 1093
L+ + +V I G G T+ V V GV+ G ++ + +V +
Sbjct: 219 DQLEPPERPLDKPLRLPIQDVYSISGIG-TVPVGRVESGVIKPGQKVTF--MPAGVVGEV 275
Query: 1094 RALLTPHPMKELRVKG 1109
+++ H G
Sbjct: 276 KSIEMHHEEISQAEPG 291
|
Length = 428 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 946
+ DTPGHE +T + G+ D+AIL+VD G+ QT I +LL +R+ +VA
Sbjct: 90 IADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI--ASLLGIRH--VVVA 145
Query: 947 LNKVDRLYGWKTCRNAPIVKA 967
+NK+D L + IV
Sbjct: 146 VNKMD-LVDYSEEVFEAIVAD 165
|
Length = 431 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 48/279 (17%), Positives = 106/279 (37%), Gaps = 2/279 (0%)
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
P A A E E KEE ++ K++K+K+KEK + K++ K + +
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLR-KEEEERKRLEELERQA 556
K K K E+ ++ + +E + + ++ K++ + + EEE++R E
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
Query: 557 EEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASK 616
+ + +E+EK ++ + T +E+ R + ++ + + P AS
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASP 265
Query: 617 RPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ +K+ + + P + + K + + + + V + S + E
Sbjct: 266 ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK-RKEIVTVLQDAQGVGKIVSNVILE 324
Query: 677 KPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGA 715
+ D EN V E + + + +G
Sbjct: 325 GKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGG 363
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 389 QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+++KK++++ E ++ + E++ + A QE+K Q E A A
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA---EEAAKQAALK 130
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+K EE ++AA+ K K + E ++ AA AAAE K++ ++EA + + K K
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK---- 186
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
EA A K A E KK+ E E +K E K+ E +A AK + K
Sbjct: 187 ---------AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Query: 569 EKLLKKKQEGKLLTGKQKEEA 589
+ + + +
Sbjct: 238 AEKAAAAKAAEKAAAAKAAAE 258
|
Length = 387 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-06
Identities = 66/331 (19%), Positives = 135/331 (40%), Gaps = 20/331 (6%)
Query: 381 VNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEP 440
+ + + KKK+++ K ++ E+++L + Q +E K+ Q
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQ---- 744
Query: 441 VAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND 500
+++ EE+ ++++K + KEK+ A +K + + E E K
Sbjct: 745 ----KIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQ 800
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL-------- 552
+ ++ K+ E+ E E EE+ K EE E L E +E ++LE+L
Sbjct: 801 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 860
Query: 553 -ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN-QFLAKGIPLPTGD 610
E +E ++ ++E+L ++K + +L + ++KE+ + E Q
Sbjct: 861 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEI 920
Query: 611 KEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGE 670
+E ++ K +S + +++ E ++E+E++ L + E V
Sbjct: 921 EERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMA 980
Query: 671 SLTVEEKPEI--ADAPKENEVEEEDDDDDEE 699
EEK E D K+ +EEE + E
Sbjct: 981 IAEFEEKEERYNKDELKKERLEEEKKELLRE 1011
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 892 VIDTPGHESFT-NLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 945
+ DTPGHE +T N+ + G+ D+AIL+VD G+ QT I S LL +R +V
Sbjct: 82 IADTPGHEQYTRNMVT-GASTADLAILLVDARKGVLEQTRRHSYIAS--LLGIR--HVVV 136
Query: 946 ALNKVD 951
A+NK+D
Sbjct: 137 AVNKMD 142
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 945
+V DTPGHE +T + G+ D+A+L+VD G+ QT I S LL +R+ ++
Sbjct: 83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIAS--LLGIRH--VVL 138
Query: 946 ALNKVDRLYGWKTCRNAPIVKAIKQ 970
A+NK+D L + I K
Sbjct: 139 AVNKMD-LVDYDEEVFENIKKDYLA 162
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 3/156 (1%)
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKG 505
+E++ E ++E A K+ ++ K + +E + E+ + K E E + +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE---AKRR 562
+++ ++ E++E L KE E K E EER EE + L ELE EE
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
E+ +E ++E L + E LE ++ +
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKRE 405
|
Length = 1163 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 26/135 (19%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA-NATLKV 887
++G GK+ LL+ + +G ++ TR+ L
Sbjct: 1 VVVGRGGVGKSSLLNAL----------------LGGEVGEVSDVPGTTRDPDVYVKELDK 44
Query: 888 PG--LLVIDTPGHESFTNLRSRGSGL-----CDIAILVVDIMHG--LEPQTIESLNLLKM 938
L+++DTPG + F L D+ +LVVD E + L L+
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 939 RNTEFIVALNKVDRL 953
I+ NK+D L
Sbjct: 105 EGIPIILVGNKIDLL 119
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 55/251 (21%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 42 LTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKN 101
LT E EEE K G + + G+E EE + +K G +
Sbjct: 159 LTAEEAEEEMKRRKKTANGFQLMMMKAAKNGPAAFGDEDEETE--------GEKGGGGRG 210
Query: 102 GGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFA 161
+ +G + D +D ++ SK K LA K + KKG K G
Sbjct: 211 KDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG--KRGGDDD 268
Query: 162 AAAFDAVDG---GSESEVIDDDHSVEESDDDDDDVV--EKSKKGGKKKSGTTGFSASAFD 216
A +D+ DG G E + I D + ++ +D + E K ++ + S
Sbjct: 269 ADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEES----- 323
Query: 217 LLDDEDEDVREDKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPI 276
+E+++ E + + K KK+ +S + +D D D +D
Sbjct: 324 ---EEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD------SGDDSDDSDIDGEDSVS 374
Query: 277 TFTDKKKKSNK 287
T KK+K K
Sbjct: 375 LVTAKKQKEPK 385
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1100
L+ V +V +G GT + +G L +GD++ V G + +++L
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK 53
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 27/164 (16%), Positives = 70/164 (42%)
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
V EEE + A ++ +++ + E E+ AAA A E K + + A + + +
Sbjct: 34 HSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAE 93
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
+ + A A + + +K ++++ + ++++ KR + + + ++ +
Sbjct: 94 AAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRR 153
Query: 567 EKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGD 610
+ +KK++ + T K E E + LA+ + + +
Sbjct: 154 RGRRRRRKKKKKQKPTEKIPREVVIPETITVAELAEKMAVKAAE 197
|
Length = 746 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-06
Identities = 47/214 (21%), Positives = 96/214 (44%), Gaps = 9/214 (4%)
Query: 481 AAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLR 540
A + + +S+ KK G +++ K+ + +E ++ +ER K+ E+ERL
Sbjct: 59 AVVQQYGRIQSQQSSAKK------GEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL- 111
Query: 541 KEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFL 600
K +E++K+ EE E+QA+ +++++E+ ++ ++K++ + K EA +L+A
Sbjct: 112 KAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA-- 169
Query: 601 AKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDV 660
K E A + + KK A +A A + E+K K ++K E E
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKA 229
Query: 661 GETEKVEEGESLTVEEKPEIADAPKENEVEEEDD 694
+K ++ + A ++ DD
Sbjct: 230 AAEKKKAAAKAKADKAAAAAKAAERKAAAAALDD 263
|
Length = 387 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-06
Identities = 90/531 (16%), Positives = 184/531 (34%), Gaps = 79/531 (14%)
Query: 248 SGKNSSTFDLLVNENDDVKED-----KDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENE 302
SG + +NE+DD++E + ++ +S+ G + S ENE
Sbjct: 3820 SGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVS--ENE 3877
Query: 303 DED-DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGA 361
+ D ++E +D DEE I + +S +E L DE N +
Sbjct: 3878 NSDSEEENQDLDEEVNDI-----------PEDLSNSLNEKLWDEPN--------EEDLLE 3918
Query: 362 VDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAE 421
+ K ++ ESD V+K + +++KE E+ S+ +++ I
Sbjct: 3919 TEQKSNEQSAANNESD--LVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
Query: 422 LGQGPAPQE-----EKVQVQPPEPVAPPDA----ADEKVGEEEKEESAASKKKKKKKEKE 472
Q P E E +++ E D+ D + +E KEE+ A +K E
Sbjct: 3977 NSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADA-----EKDEPM 4031
Query: 473 KEKKAAAAAAAEDKQQGKSEAVETKKNDGK--SKGPEKKMSKQVREMQEALARRKEAEER 530
+++ D+ + + + ++D K G E + V+E +E+ +++E
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE----ENVQENEESTEDGVKSDEE 4087
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK----EKEKLLKKKQEGKLLTGK-- 584
++ E + + K + + EA +K E E+L ++ T
Sbjct: 4088 LEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGE 4147
Query: 585 ----QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
Q++ + EAM + ++Q + + +
Sbjct: 4148 FEQVQEDTSTPKEAMSEADRQY--------QSLGDHLREWQQANRIHEWEDLT----ESQ 4195
Query: 641 SIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKE-NEVEEEDDDDDEE 699
S + E + E D+ E+ + +++ P N +D+ DE
Sbjct: 4196 SQAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEV 4255
Query: 700 WDAKSWDDVNLN-VKGAFDDE------EADSEPEPLVKKEIKSAIPSPRDA 743
D + D +++ +K +D + + E + D
Sbjct: 4256 GDKQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDY 4306
|
Length = 4600 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 45/147 (30%)
Query: 893 IDTPG-HESFTNLRSR-------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 944
+DTPG H+ L R D+ + VVD + L LLK T I
Sbjct: 56 VDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPVI 115
Query: 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 1004
+ LNK+D +K + L+ ++ +LKE E
Sbjct: 116 LVLNKIDL---------------VKDKE---------DLLPLLEKLKELHPFAE------ 145
Query: 1005 DRGETFNIVPTSAISGEGIPDLLLLLV 1031
I P SA+ GE + +LL +V
Sbjct: 146 -------IFPISALKGENVDELLEYIV 165
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 50/312 (16%)
Query: 324 KKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNK 383
KKK+ K KK + S E+L + V P S V K + S V ++ +
Sbjct: 55 KKKRRKKLKKPLKSD-EILENRSKV----PAPSVKKRHVKKKSKKKKSKQVSRK--ELLR 107
Query: 384 GEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEK---ILAELGQGPAPQEEKVQV-QPPE 439
+ +A+ K K K + EE+ + +L + Q K V P
Sbjct: 108 LKKLARGKKGGKAKLLNASKDNYDLWGEEEPPDTPKWPKKDLAEHTLEQVAKKTVKTAPI 167
Query: 440 PVAPPDAA--------------------DEKVGEEEKEESAASKKKKKKKEKEKEKKAAA 479
+A E + EE ++E A KK+++ + E++K
Sbjct: 168 SLAANGKPVPAVEVPHAGASYNPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKM 227
Query: 480 AAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE---------ER 530
A A + +E +DG+ + ++ + E + + + E+
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEK 287
Query: 531 KKREEEERLRKEEEERKRLEELER---------QAEEAKRRKKEKEKEKLLKKKQEGKLL 581
+++E E ++E++ +K+L +L R Q E+A+ RKKE+ KE+ KKK + + L
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKL 347
Query: 582 TGKQKEEARRLE 593
GK K LE
Sbjct: 348 -GKHKYPEPPLE 358
|
This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-06
Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 10/298 (3%)
Query: 380 KVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPE 439
K++ E V + K K + ++ E E+ E + ++++ + P+
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKK-KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
P + A EK +EKE+ K ++ + +E+EK+++ A + K K + K+
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ K + + +E + +E ++ E EE + + E
Sbjct: 190 PPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRS 249
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRP 618
+ KK + + +E ++R E L P + A +
Sbjct: 250 SSSLKKPDPSPSMASP---------ETRESSKRTETRPRTSLRPPSARPASARPAPPRVK 300
Query: 619 KYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
+ + Q G + K ++++ + ++E + V GE +
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDG 358
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-06
Identities = 49/273 (17%), Positives = 112/273 (41%), Gaps = 25/273 (9%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +KE E+ E + EE+ LE++ EL +E + +++ ++ E
Sbjct: 235 KELRKELEELEEELSRLEEE-LEELQEEL------EEAEKEIE---------ELKSELEE 278
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E ++ + KE+ +E + + E ++ ++E E ++ + K + + ++
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Query: 514 VREMQ---EALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+ E + E L + E K E EE+L EE + L E R+ + + + +
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKK------ 624
L + K+E + L + + + RLE ++ + L E + + +
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458
Query: 625 KSAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657
+ + + ++ ++ EKE E L+
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLD 491
|
Length = 1163 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-06
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 178 DDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASA--FDLLDDEDEDVREDKDEEDEP 235
DD ++ +D D+ K KK K+ DD DE +D D+E
Sbjct: 224 DDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGRE 283
Query: 236 VIFTDKKKKS-------KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKG 288
+ S + + +++D +E ++E +E KK K K
Sbjct: 284 EDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Query: 289 GRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSS 337
+ + + D +++ DD + D D ED + T KK+K ++ V S
Sbjct: 344 LKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDS 392
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 456 KEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET---KKNDGKSKGPEKKMSK 512
K+ K +K +EK+K+++ AE +Q+ E E +K +K K K
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E + ER +EE + R +E E K+L++ +++ EE +R++++K++E+
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 573 KKKQ 576
+K++
Sbjct: 216 RKQK 219
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 4e-06
Identities = 58/270 (21%), Positives = 99/270 (36%), Gaps = 75/270 (27%)
Query: 830 IMGHVDTGKTKLLDCI--------RGTNVQEGEAG----------GITQQIGATYFPAEN 871
I+ H+D GKT + I + V G A GIT Q AT ++
Sbjct: 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCFWKD 63
Query: 872 IRERTRELKANATLKVPGLLVIDTPGHESFT-----NLRSRGSGLCDIAILVVDIMHGLE 926
R + +IDTPGH FT +LR + D A+ V D + G++
Sbjct: 64 HR----------------INIIDTPGHVDFTIEVERSLR-----VLDGAVAVFDAVAGVQ 102
Query: 927 PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986
PQT I +NK+DR A + ++Q ++ + V +
Sbjct: 103 PQTETVWRQADRYGVPRIAFVNKMDRT-------GADFYRVVEQ----IREKLGANPVPL 151
Query: 987 VTQLKEQG--------MNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038
+ + + + Y + + GE IP+ LL + ++ +
Sbjct: 152 QLPIGAEDDFEGVVDLIEMKALYWDGELGEKIEETD--------IPEDLLEEAEEAREEL 203
Query: 1039 VEKLTFRNELQCTVLEVKVIEGHGTTIDVV 1068
+E L E+ ++E K +EG T + +
Sbjct: 204 IETLA---EVDDELME-KYLEGEEITEEEI 229
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 878
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 7 IIAHVDHGKTTLVDA-------------LLKQSG-TFRENEEVGERVMDSNDLERERGIT 52
Query: 879 -LKANATLKVPG--LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 935
L N + + +IDTPGH F R + D +L+VD G PQT L
Sbjct: 53 ILAKNTAITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 112
Query: 936 LKMRNTEFIVALNKVDR 952
+ IV +NK+DR
Sbjct: 113 ALEAGLKPIVVINKIDR 129
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-06
Identities = 40/147 (27%), Positives = 80/147 (54%), Gaps = 16/147 (10%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+E EE A ++ KKE E KK A A E+ + ++E E + + +++ +K+ K+
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF-EKELRERRNE--LQKLEKR 90
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ + +E L R+ E E+++ E E+ KE+E ++ +ELE++ EE + E++ ++L +
Sbjct: 91 LLQKEENLDRKLELLEKREEELEK---KEKELEQKQQELEKKEEELE-ELIEEQLQELER 146
Query: 574 KKQEGKLLTGKQKEEARR--LEAMRNQ 598
++G EEA+ LE + +
Sbjct: 147 -------ISGLTAEEAKEILLEKVEEE 166
|
Length = 520 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 894 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952
DTPGHE F+ R D A++V+D G+EPQT++ + ++R+ +NK+DR
Sbjct: 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145
|
Length = 528 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 6e-06
Identities = 49/306 (16%), Positives = 123/306 (40%), Gaps = 23/306 (7%)
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
+ K+K + + + E+ + L + ++E+++ E + + + E
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKE 274
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
++EE ++++ K KE++ KSE ++ ++ + K+ K+
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEEL-----------KSELLKLERRKVDDEEKLKESEKE 323
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
++++++ L + KE E ++E +E K E E + E+LE+ E+ ++ ++E +K L+
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
++ K++E + E + K + + K +
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKE------------AKLLLELSEQEEDLLKEEKKEELK 431
Query: 634 AVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEED 693
V E+S+E+K+ + +++ LE + K + + + E ++E
Sbjct: 432 IVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLL 491
Query: 694 DDDDEE 699
E
Sbjct: 492 LRQKLE 497
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 437 PPEPVAPPDAA---DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEA 493
P A D ++ KK KKE+E++KK A +KQ+ +E
Sbjct: 30 EPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQR-AAEQ 88
Query: 494 VETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLE-EL 552
K+ + ++ + ++A K+AEE++K+ EE + ++ E + + E E
Sbjct: 89 ARQKELEQRAAAEK--------AAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Query: 553 ERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
E++A+E +++ E+E + + + K K+K EA
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 9/63 (14%)
Query: 894 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVALN 948
DTPGHE +T + G+ CD+AIL++D G+ QT I + LL +++ +VA+N
Sbjct: 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIAT--LLGIKH--LVVAVN 168
Query: 949 KVD 951
K+D
Sbjct: 169 KMD 171
|
Length = 474 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 13/273 (4%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
E K S + K+ +K + A + GK E E ++ + K ++K
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP--- 124
Query: 514 VREMQEALARRKEAEE-RKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+E + ++EA+E R +E+E+ K+ EE + EE +++ + + +K +K
Sbjct: 125 -KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKP 183
Query: 573 KKKQEGKLLTGKQKEEARRLEA-----MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
K++ KQ++ AR + D+E + + ++S+
Sbjct: 184 PNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSS 243
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKEN 687
+ LK+ E +E+ + + + +P P+
Sbjct: 244 EISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPA---PPRVK 300
Query: 688 EVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEE 720
E D + K +V L K + D+++
Sbjct: 301 RKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDD 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 5/195 (2%)
Query: 407 RTAQEEDDLEKILAELGQGPAPQ-EEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
R ++ +K + + EE Q E E++ +E+++ A +K
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE--KKMSKQVREMQEALAR 523
+ + E++++++ A AAAE K++ ++ + K K KK +++ + E
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKA 185
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTG 583
+ EA KK+ E E E+ + E + E K +EK KKK K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKA--EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 584 KQKEEARRLEAMRNQ 598
K A+ E
Sbjct: 244 KAAAAAKAAERKAAA 258
|
Length = 387 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 1e-05
Identities = 39/217 (17%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 453 EEEKEESAASKKKKKKKEKEKEK-KAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
+ E ++ +K+ E E+E ++ A ++++ + E ++N K++ +++
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
KQ +++Q RL+ E+R++LE + Q+ +A +++ + +L
Sbjct: 144 KQAQDLQ------------------TRLKTLAEQRRQLEA-QAQSLQASQKQLQASATQL 184
Query: 572 LKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ + KL + + ++EA+ L N A+ L A Q + Q
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQI-SQK 243
Query: 632 NGAVPLKEDSI---ESKEKEQEKQETLLEVDVGETEK 665
+ + + I E + + E + LE +V + E
Sbjct: 244 AQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
|
Length = 499 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K ++++K+KE+ +E ++ ++ L +L + + K Q Q + A
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEK----ERLKAQEQQKQAEEAEKQA 127
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ ++E++ A+ ++KKK E K K AA AA + + K +A E K +
Sbjct: 128 QLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK----AAEEA 183
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
K ++ ++A A K A E+ K E E + + E++ EE ++ K + +
Sbjct: 184 KAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Query: 568 KEKLLKKKQEGK 579
K K E K
Sbjct: 244 KAAAAAKAAERK 255
|
Length = 387 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-05
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
E+E E+KA A A + + E +E KK + + +K + + +E Q+A+ K+
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE-EDKLLEEAEKEAQQAIKEAKKEA 586
Query: 529 ERKKREEEERLRKE---------EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579
+ +E + + E RKRL + + E+ K KK+KEK++ LK E K
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK--KKQKEKQEELKVGDEVK 644
Query: 580 LLTGKQK 586
L+ QK
Sbjct: 645 YLSLGQK 651
|
Length = 782 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-05
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 36/142 (25%)
Query: 830 IMGHVDTGKTKLLDCI--------------RGTNV-----QEGEAGGITQQIGATYFPAE 870
I+ H+D GKT L + I GT V QE E GIT + AT +
Sbjct: 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQER-GITIESAATSCDWD 71
Query: 871 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
N R + +IDTPGH FT R + D A++V D + G++PQT
Sbjct: 72 NHR----------------INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE 115
Query: 931 ESLNLLKMRNTEFIVALNKVDR 952
++ +NK+DR
Sbjct: 116 TVWRQADRYGIPRLIFINKMDR 137
|
Length = 687 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 830 IMGHVDTGKTKLLD--CIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLK 886
I+ H D GKT + + + G +Q G G Q A E ++R + + ++
Sbjct: 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISI-TTSVMQ 74
Query: 887 VP--GLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
P LV +DTPGHE F+ R D ++V+D G+E +T + + + ++R+T
Sbjct: 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP 134
Query: 943 FIVALNKVDR 952
+NK+DR
Sbjct: 135 IFTFMNKLDR 144
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-05
Identities = 20/143 (13%), Positives = 56/143 (39%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++G E K S+ ++++ +KE+ K + A A ++ E K + E+
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
A EA + K+ ++K+ + +++ + K + K
Sbjct: 85 AAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRG 144
Query: 569 EKLLKKKQEGKLLTGKQKEEARR 591
+ +++ ++K++ ++
Sbjct: 145 KGGKGRRRRRGRRRRRKKKKKQK 167
|
Length = 746 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-05
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 511 SKQVREMQEAL-ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+++ E+ +L +E E+ K EE E L KE E K EELE + E+ +E+E +
Sbjct: 515 KEKLNELIASLEELERELEQ--KAEEAEALLKEAE--KLKEELEEKKEKL----QEEEDK 566
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHH 629
L + ++E + + K+EA + + L KG E A
Sbjct: 567 LLEEAEKEAQQAIKEAKKEADEIIK-ELRQLQKGGYASVKAHEL-----------IEARK 614
Query: 630 QANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEV 689
+ N A KE + K+K++EKQE E+ VG+ K L++ +K E+ P + E
Sbjct: 615 RLNKANEKKE---KKKKKQKEKQE---ELKVGDEVKY-----LSLGQKGEVLSIPDDKEA 663
Query: 690 EEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAIPSPR 741
+ + + V + D E+ + KK K+ P PR
Sbjct: 664 IVQA------------GIMKMKVPLS-DLEKIQKPKKKKKKK-PKTVKPKPR 701
|
Length = 782 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 60/268 (22%), Positives = 121/268 (45%), Gaps = 7/268 (2%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKV 451
K+ + K++ R++ A++ + K AE+ + EK + P + A +
Sbjct: 5 KDLEDLKKEAARRAKEEARKRL-VAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRA 63
Query: 452 GEEEKEESAASKKKKKKKEKE--KEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKK 509
K ++AA K+K++ +E +E+KA A A A + K+ A+ +K +G + E++
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 510 MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE 569
+ + A + A ++KRE E + +EEEE + + + A AK + K+
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQ 183
Query: 570 KLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIP---LPTGDKEAASKRPKYQTKKKS 626
K + + + +T ++K +A+ A + A + G+ ++ + K +
Sbjct: 184 KAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAK-AKAIAA 242
Query: 627 AHHQANGAVPLKEDSIESKEKEQEKQET 654
A +A A K E K++E+ KQE
Sbjct: 243 AKAKAAAAARAKTKGAEGKKEEEPKQEE 270
|
Length = 430 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 894 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952
DTPGHE F+ R D A++V+D G+EPQT + + + ++R+T +NK+DR
Sbjct: 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDR 143
|
Length = 526 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+++ EE K+E+ KK+ + KE+ K A E K++ ++ + + ++
Sbjct: 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR 94
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQA----EEAK---- 560
KM ++ + + KE ++K +E+ EE ++ EELER + EEAK
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILL 154
Query: 561 ---RRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
+ E KL+K+ +E + KEEA +
Sbjct: 155 EEVEEEARHEAAKLIKEIEE------EAKEEADK 182
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 34/120 (28%)
Query: 915 AILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974
+L++D HG P +E L L+ F++ L K D+L
Sbjct: 85 VVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKL--------------------- 123
Query: 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034
++E L +I +L ++ S+ G GI +L L+ +W
Sbjct: 124 KKSELAKVLKKIKEELNL-------------FNILPPVILFSSKKGTGIDELRALIAEWL 170
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-05
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 45/148 (30%)
Query: 893 IDTPG-HESFTNL-----RSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 944
+DTPG H+ L ++ S L D+ + VVD + P L LK T I
Sbjct: 58 VDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI 117
Query: 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 1004
+ LNK+D +K + L+ ++ +L E E
Sbjct: 118 LVLNKIDL---------------VKDKE---------ELLPLLEELSELMDFAE------ 147
Query: 1005 DRGETFNIVPTSAISGEGIPDLLLLLVQ 1032
IVP SA+ G+ + +LL ++ +
Sbjct: 148 -------IVPISALKGDNVDELLDVIAK 168
|
Length = 292 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 46/241 (19%), Positives = 95/241 (39%), Gaps = 20/241 (8%)
Query: 389 QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
Q + +K+ EK + + LEK L L A E ++ A D
Sbjct: 39 QLKQIQKEIAALEK-KIREQQDQRAKLEKQLKSLETEIASLEAQLI---------ETADD 88
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
K ++ + A + +E+E+ ++ A AA ++ G++ + ++
Sbjct: 89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA-LQRSGRNPPPALLVSPEDAQR-SV 146
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL--ERQAEEAKRRKKEK 566
+++ + A A R +A + ++ + E+ L L E++A++AK + +
Sbjct: 147 RLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLE 206
Query: 567 EKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKS 626
E++K L + +L ++K E R R L I + + AA R + +
Sbjct: 207 ERKKTLAQLNS-ELSADQKKLEELRANESR---LKNEI--ASAEAAAAKAREAAAAAEAA 260
Query: 627 A 627
A
Sbjct: 261 A 261
|
Length = 420 |
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-05
Identities = 55/309 (17%), Positives = 105/309 (33%), Gaps = 35/309 (11%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKK-- 466
A+ E+ EK+ +G + +KV Q P+ AP + E EE+ S +
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 467 ------KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND---GKSKGPEKKMSKQVREM 517
K K + KK A AAA E +++ + ++ + + KM + V
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETV--- 1289
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR-------KKEKEKEK 570
+A+ R+ A +K + +++ AE K++ +K +
Sbjct: 1290 -KAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKP 1348
Query: 571 LLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
K+ G + + L M A GI +K+ R KK +
Sbjct: 1349 PAAAKKRGP---ATVQSGQKLLTEMLKPAEAIGIS---PEKKVRKMRASPFNKKSGSVLG 1402
Query: 631 ANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVE 690
E S +++ + ++ ++ V E+E
Sbjct: 1403 RAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDS-------ESESA 1455
Query: 691 EEDDDDDEE 699
++ D DD+E
Sbjct: 1456 DDSDFDDDE 1464
|
Length = 1465 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 14/195 (7%)
Query: 458 ESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREM 517
ES K+ ++ ++E +KK A A+ K + + ++++ + K E K + +
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
++ AE +K+ E+ ++ ++ + + L+ + +A + K+ K EKE K+ +
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHH-------- 629
K K++ A L+ + Q A+ P + S P Y K
Sbjct: 327 QK----KREPVAEDLQKTKPQVEAQ--PTSLNEDAIDSSNPVYGLKVVDPITNLSELVLI 380
Query: 630 QANGAVPLKEDSIES 644
V L+E + ++
Sbjct: 381 DLKTEVRLRESAQQT 395
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-05
Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 10/207 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND--GKSKGPEKKM 510
E++K+ +++ +E E + + D+ + +E K + + + E ++
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 511 SKQVREMQEALARRKEAE---ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK--E 565
+ E++E +R +E E E + + + + +E LE + E + R++ +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
Query: 566 KEKEKLLKKKQEGKL--LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+E E+LLKK +E +L L + +E LE ++ + L +E
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQE 650
++ Q + E E+ E E
Sbjct: 481 ERE-LAQLQARLDSLERLQENLEGFSE 506
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-05
Identities = 64/325 (19%), Positives = 130/325 (40%), Gaps = 45/325 (13%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E A SK K++K+E E+ + ERT + + LE +L EL +
Sbjct: 162 EEAAGVSKYKERKEEAER-KLERTEENLERLEDLLEELEK-------------------- 200
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+ EK E A K ++ ++ K + ++ A ++ + E E ++ + +
Sbjct: 201 --------QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLE 252
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK 564
+++ +++ E ++ + K E + E EE + E ++ +EELE + + R +
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312
Query: 565 EKE-------------KEKLLKKKQEGKLLTGKQKEEARR---LEAMRNQFLAKGIPLPT 608
E E KEK+ K+E + +E + LE + + K L
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Query: 609 GDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+E + + ++ + + + IES E+ E+ LE E +++E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 669 GESLTVEEKPEIADAPKENEVEEED 693
E E+ + +E E + E+
Sbjct: 433 ELEELQTELEELNEELEELEEQLEE 457
|
Length = 1163 |
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 23/202 (11%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ K + + + ++E E K S A++ K +E +
Sbjct: 70 KLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELL 129
Query: 486 KQQGKSEAVET-----------KKNDGKSKGPEK----------KMSKQVREMQEALARR 524
K+ V+ K D E ++SK++ E++
Sbjct: 130 KETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEE 189
Query: 525 KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E ++KREE + EEE RLE E E+ R + E+EKE+L KK +E KL
Sbjct: 190 LERALKEKREELLS-KLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE-KLRQEL 247
Query: 585 QKEEARRLEAMRNQFLAKGIPL 606
+++ + ++N+ + I L
Sbjct: 248 ERQAEAHEQKLKNELALQAIEL 269
|
Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 6e-05
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
IDTPGH F+ SR C+ A+LVVD G+E QT+ ++ L + E I LNK+D
Sbjct: 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKID 137
|
Length = 600 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI----RERTRELKANATLK 886
+GHVD GKT L I T V ++ GA + I E+ R + N
Sbjct: 8 IGHVDHGKTTLTAAI--TKVL-------AKKGGAKAKKYDEIDKAPEEKARGITINTAH- 57
Query: 887 VPGLLV-----------IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 935
V +D PGH + G+ D AILVV G PQT E L L
Sbjct: 58 -----VEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL 112
Query: 936 LKMRNTE-FIVALNKVD 951
+ +V LNK D
Sbjct: 113 ARQVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-05
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 830 IMGHVDTGKTKLLDCI---RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT-- 884
I H+D GKT + I G + GE AT E +ER + + AT
Sbjct: 15 ISAHIDAGKTTTTERILFYTGRIHKIGE----VHDGAATMDWMEQEKERGITITSAATTV 70
Query: 885 -LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF 943
K + +IDTPGH FT R + D A+ V+D + G++PQ+
Sbjct: 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR 130
Query: 944 IVALNKVDR-----LYGWKTCRNAPIVKAIKQQ-NTDVQNEFNMRLVQIVTQLKEQGMNT 997
I +NK+D+ L + A+ Q ++ F ++ +V
Sbjct: 131 IAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFI-GVIDLVEM-------- 181
Query: 998 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKV 1057
+ Y+ N D+G + IP LL + ++ +VE + +E L K
Sbjct: 182 KAYFFNGDKGTKAIE--------KEIPSDLLEQAKELRENLVEAVAEFDE----ELMEKY 229
Query: 1058 IEGHGTTIDVV---LVNGVLHEGDQIVVCG 1084
+EG TI+ + + GVL+ V+CG
Sbjct: 230 LEGEELTIEEIKNAIRKGVLNCEFFPVLCG 259
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-04
Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 376 SDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQV 435
+ + V+ E++ + K+ + K S +EE E+ E + + E+
Sbjct: 10 AKELGVSSKELLEK----LKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAA 65
Query: 436 QPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVE 495
E A +AA EE E +AA++ + E E + A AAA ++ +
Sbjct: 66 AEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKG 125
Query: 496 TKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE 551
K K K + K+ + + RR+ R+K++++++ ++ + E
Sbjct: 126 PKPKKKKPKRKAARGGKRGKG-GKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180
|
Length = 746 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKA--AAAAAAEDKQQGKSEAVETKKNDGK 502
+ E EEK E + + ++E E+ +K A A +Q K E N
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL-- 314
Query: 503 SKGPEKKMSKQVREMQEALARRKEAEERKKR--EEEERLRKE-EEERKRLEELERQAEEA 559
E+++ + +++E ++ E E E+ E L++E E LEELE + EE
Sbjct: 315 ----ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ R +E E++ L + + L + +E + + E R +
Sbjct: 371 ESRLEELEEQ-LETLRSKVAQLELQIASLNNEIERLEAR------------LERLEDRRE 417
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE 676
++ + LKE E +E E+E +E E++ E E E L E
Sbjct: 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 74/409 (18%), Positives = 147/409 (35%), Gaps = 13/409 (3%)
Query: 186 SDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDEDVREDKDEEDEPVIFTDKKKKS 245
D + K + K K S + L ++ E + E +
Sbjct: 627 EGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKE------LLAEQ 680
Query: 246 KKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDED 305
+ K S + K E K + + + NE+
Sbjct: 681 ELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELK 740
Query: 306 DDEKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTK 365
E+K K++E+E KK++ + K +S + L +EE E V +
Sbjct: 741 LLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKE-EKLKA 799
Query: 366 QQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQ- 424
Q+ ++ E + E + ++K KE+E +EE LEK+ E +
Sbjct: 800 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 859
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
++ +Q + E+ +++ ES K+K++KKE E+E + +
Sbjct: 860 LEEEITKEELLQELLLK---EEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEK 916
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
+ + + A E PE+ + ++ E ++ ++E EER KR +
Sbjct: 917 ENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNV 976
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLE 593
+ E E +E + K E +KE+L ++K+E ++ + +
Sbjct: 977 NLMAIAEFEE--KEERYNKDELKKERLEEEKKELLREIIEETCQRFKEF 1023
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%)
Query: 381 VNKGEVVAQTSKNKKKKKEKEKPRSERTAQE-EDDLEKILAELGQGPAPQEEKVQVQPPE 439
+ K E ++ KN+ + E R +E E LE++ EL E+
Sbjct: 683 LEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL------- 735
Query: 440 PVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKN 499
+ + EEE EE ++ +++ +E E++ + A K + + E +E K+
Sbjct: 736 ------QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR- 788
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
+ +QE L +E E +R + R+ E +R E LE++ EE
Sbjct: 789 ---------------QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ +E E EKL + ++E + L + +E LE + + +E + +
Sbjct: 834 EEEIEELE-EKLDELEEELEELEKELEELKEELEELEAEK-----------EELEDELKE 881
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPE 679
+ +K+ + E + ++E EK LE + E++E EE E
Sbjct: 882 LEEEKEELEEELREL----ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937
Query: 680 IADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEA 721
+ E E+E E + +EE ++ VNL +++ E
Sbjct: 938 EYEDTLETELEREIERLEEE--IEALGPVNLRAIEEYEEVEE 977
|
Length = 1163 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK + K KE E++A ++ K EA KK E + + +E E
Sbjct: 26 KKIAEAKIKEAEEEAKRI-----LEEAKKEAEAIKK--------EALL--EAKE--EIHK 68
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKE--KEKEKLLKKKQEGKL 580
R E E+ + E + E+ ++ E L+R+ E ++R++E K++++L +K+QE +
Sbjct: 69 LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE- 127
Query: 581 LTGKQKEEARRLEAMRNQFL 600
K++EE L + Q L
Sbjct: 128 ---KKEEELEELIEEQLQEL 144
|
Length = 520 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 832 GHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIG---ATYFPAENIRER---TRELKAN 882
GHVD GKT L + G E GI+ ++G A + T E
Sbjct: 11 GHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCP 70
Query: 883 ATLKVPGLL----VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK 937
LL +D PGHE+ G+ L D A+LV+ +PQT E L L+
Sbjct: 71 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE 130
Query: 938 MRNTE-FIVALNKVD 951
+ + ++ NK+D
Sbjct: 131 IIGIKNIVIVQNKID 145
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 27/221 (12%), Positives = 73/221 (33%), Gaps = 11/221 (4%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ AEE K++ ++ K + + +E ++A E+K++ E+ + L+
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 576 QEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
K + + + + AK K+ K + +
Sbjct: 61 GMVKDTDDATESDIPKKKTKT---AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
I+ + + + + D+ + + ++ + +E + D E+E ++E +
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Query: 696 DDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736
++ D + +D+ K +A
Sbjct: 178 LEKLSDDDDFVWD--------EDDSEALRQARKDAKLTATA 210
|
Length = 509 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 68/253 (26%)
Query: 830 IMGHVDTGKTKLLDCI---------RGTNVQEGEA----------GGITQQIGATYFPAE 870
I+ HVD GKT L + + G+ V +G GIT F E
Sbjct: 4 ILAHVDAGKTTLTESLLYTSGAIRELGS-VDKGTTRTDSMELERQRGITIFSAVASFQWE 62
Query: 871 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
+ + + +IDTPGH F R + D AILV+ + G++ QT
Sbjct: 63 DTK----------------VNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR 106
Query: 931 ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ---------------QNTDV 975
LL+ N I+ +NK+DR + + IK+ N
Sbjct: 107 ILFRLLRKLNIPTIIFVNKIDRA---GADLEK-VYQEIKEKLSPDIVPMQKVGLYPNICD 162
Query: 976 QNEFNMRLVQIVTQLKEQGM----------NTELYYKNKDRGETFNIVPT---SAISGEG 1022
N + ++ V + ++ + EL + R + ++ P SA+ G G
Sbjct: 163 TNNIDDEQIETVAEGNDELLEKYLSGGPLEELELDNELSARIQKASLFPVYHGSALKGIG 222
Query: 1023 IPDLLLLLVQWTQ 1035
I +LL +
Sbjct: 223 IDELLEGITNLFP 235
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 39/278 (14%), Positives = 75/278 (26%), Gaps = 42/278 (15%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
E QEE K++ K K ++ K ++ E+ ++ K +
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS-----SADKSKKASVVG 1196
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
N+ + E + DK D+ + + +K K
Sbjct: 1197 NSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSS----------------- 1239
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+S+ + S E++D+ D + K K SA
Sbjct: 1240 ----VKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPK-----RVSAVQYSPPPPSK 1290
Query: 225 VREDK----DEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNENDDVKEDKDEDDEPITFTD 280
+ + + P KK+ K
Sbjct: 1291 RPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS----- 1345
Query: 281 KKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEP 318
+ S R R D + ++DDD + D E+++
Sbjct: 1346 ASQSSRLLRRPRKKKSD--SSSEDDDDSEVDDSEDEDD 1381
|
Length = 1388 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 53/311 (17%), Positives = 114/311 (36%), Gaps = 36/311 (11%)
Query: 392 KNKKKKKEKEKPRSERTAQEE---DDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAAD 448
+ +KKEKE + + T ++ +DL+K L + QEE + + +
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEE----QEEVEEKEIAKEQRLK---- 1159
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
+ + K +K K K+KEKK ++A + K+ + +D K K +K
Sbjct: 1160 -------SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+K + + + ++EE+ K ++ + + ++ ++
Sbjct: 1213 PDNK-----------KSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
L K EGK ++ A + G + +K+ + + S
Sbjct: 1262 SDDLSK--EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLA 1319
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
K+ + + K K + KQ + + ++ + E+ D E +
Sbjct: 1320 ALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED-----DDDSEVD 1374
Query: 689 VEEEDDDDDEE 699
E++DD+D+E
Sbjct: 1375 DSEDEDDEDDE 1385
|
Length = 1388 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVA 946
V DTPGHE +T G+ D+AI++VD G+ QT I S LL +R+ ++A
Sbjct: 108 VADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIAS--LLGIRH--VVLA 163
Query: 947 LNKVDRLYGW 956
+NK+D L +
Sbjct: 164 VNKMD-LVDY 172
|
Length = 632 |
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 510 MSKQVREMQEALARRK---EAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR---- 562
+ +++ +M+E + R + E E E EE+L++EEEE + LE+ + EE RR
Sbjct: 10 LEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEE 69
Query: 563 --KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAK 602
E+E+E+L + E K +EE + EA Q +
Sbjct: 70 AAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQE 111
|
This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-04
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 831 MGHVDTGKTKLLDCI--------RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
+GH GKT L + I R V++G + P E RER + +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTM-------DFMPEE--RERGISITSA 51
Query: 883 AT-LKVPGLLV--IDTPGHESFT-NLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLL 936
AT + G + IDTPGH FT + L D A++VV + G+EPQT
Sbjct: 52 ATTCEWKGHKINLIDTPGHVDFTGEVER---ALRVLDGAVVVVCAVGGVEPQTETVWRQA 108
Query: 937 KMRNTEFIVALNKVDR 952
+ I+ +NK+DR
Sbjct: 109 EKYGVPRIIFVNKMDR 124
|
Length = 668 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 60/309 (19%), Positives = 110/309 (35%), Gaps = 42/309 (13%)
Query: 259 VNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMR--SSAFDLLENEDEDDDEKKDKDE-E 315
V E + E E+ E T + + GG ENE E + + K E E
Sbjct: 635 VAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQE 694
Query: 316 DEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQ-QSGDSSIV 374
E + + K K + E + ++ G D + ++G+
Sbjct: 695 GE----GEIEAKEADHKG----------ETEAEEVEHEGETEAEGTEDEGEIETGEEGEE 740
Query: 375 ESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQ 434
D+ +GE K + E E R E + E + E E +G E +
Sbjct: 741 VEDE---GEGEAEG------KHEVETEGDRKETEHEGETEAEGKEDE-DEGEIQAGEDGE 790
Query: 435 VQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
++ E + + EK+E + + + K++ AE++ + K +
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDE- 849
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELER 554
+ G S G + + +E EE ++ EEEE +EEEE + E L
Sbjct: 850 KGVDGGGGSDGGDSE-------------EEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896
Query: 555 QAEEAKRRK 563
+ E ++++
Sbjct: 897 EWPETRQKQ 905
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 56/274 (20%), Positives = 100/274 (36%), Gaps = 16/274 (5%)
Query: 375 ESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQ 434
E ++ + +K E+ + + KE ++ E+ QEE+ E + + +
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 435 VQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
KV +EEK + + + KK +KE +KEK+ E K+
Sbjct: 310 ---------------KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREA 354
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELER 554
E ++ + K EK + + + + K +EEE K EEE++ LE
Sbjct: 355 EEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLEL 414
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
+E K+EK KE+L ++ + L KQ + E + Q L K
Sbjct: 415 SEQEEDLLKEEK-KEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKE 648
+ K L+E S + +
Sbjct: 474 LLKETKLVKLLEQLELLLLRQKLEEASQKESKAR 507
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 912 CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971
D+A+LVVD G +E + LK R +IV +NK+D + ++ ++++
Sbjct: 86 TDLALLVVDAGVGPGEYELELIEELKERKIPYIVVINKID------LGEESAELEKLEKK 139
Query: 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031
+ SA++GEGI +L ++
Sbjct: 140 ------------------------------------FGLPPIFVSALTGEGIDELKEAII 163
Query: 1032 Q-----WTQKTMVEKL 1042
+ + + T+V L
Sbjct: 164 ELLPEDFEEPTIVGDL 179
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 28/85 (32%), Positives = 56/85 (65%)
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
Q R +E +ER+++EE++RL +EE +R+ EE R+ EEA+R+++E+ +EK K K++
Sbjct: 34 QAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRK 93
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAK 602
+ +++EE R++ + + A+
Sbjct: 94 AEEEEKQEQEEQERIQKQKEEAEAR 118
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 878
I+ HVD GKT L+D + +Q G T+ E + ER +E
Sbjct: 10 IIAHVDHGKTTLVDAL-------------LKQSG-TFREREEVAERVMDSNDLEKERGIT 55
Query: 879 -LKANATLKVPGLL--VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL 935
L N + G ++DTPGH F R + D +L+VD G PQT L
Sbjct: 56 ILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKK 115
Query: 936 LKMRNTEFIVALNKVDR 952
+ IV +NK+DR
Sbjct: 116 ALALGLKPIVVINKIDR 132
|
Length = 603 |
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 11/225 (4%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKE-KKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
DA + E++ E A ++ + K E E ++ A AE ++ K ET+
Sbjct: 222 DAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAW 281
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERK-----KREEEERLRKEEEERKRLEELERQAEE 558
K ++ ++Q + E + ++A+ + K E +R ER++ ELE Q
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 559 AKRRKKEKEKEKLLKKKQEGKLLTGKQKEEA-----RRLEAMRNQFLAKGIPLPTGDKEA 613
+++ ++ K G Q E A EA R + A ++E
Sbjct: 342 YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQ 401
Query: 614 ASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEV 658
+ + K A QA E E + E E + L E
Sbjct: 402 VEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEA 446
|
Length = 548 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1121
GT + +G L +GD++V+ + +L H V G A
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAG---------ANA 51
Query: 1122 GIKITAQGLEHAIAG 1136
GI + GL+ G
Sbjct: 52 GIILAGIGLKDIKRG 66
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E+ K ++EK K K+ + A +++ + ++ PE K +
Sbjct: 53 EDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPS 112
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEK-EKLLKK 574
+ + AE + ++E + LR E +E K LE+ + +R E + K LK+
Sbjct: 113 EPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKR 172
|
Length = 424 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 37/217 (17%), Positives = 89/217 (41%), Gaps = 18/217 (8%)
Query: 382 NKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPV 441
+ + + + + +E E+ E + E E++ ++ ++
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL------ 356
Query: 442 APPDAADEKVGEEEKEESAASKKKKKKKEKEKEK----KAAAAAAAEDKQQGKSEAVETK 497
+E E E++ SA ++ ++ E +E+ +A A + ++ K E +
Sbjct: 357 ------EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + + ++++E++ L + E E EE + EE R RL+ELER E
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER--E 468
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
A+ +++ + EK L + ++ ++ + A
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
|
Length = 1163 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 38/142 (26%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERT-------RE---- 878
I+ HVD GKT L+D + +Q G T+ E + ER RE
Sbjct: 6 IIAHVDHGKTTLVD-------------ALLKQSG-TFRANEAVAERVMDSNDLERERGIT 51
Query: 879 -LKANATLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT----IE 931
L N ++ G + +DTPGH F R G+ D +L+VD G PQT +
Sbjct: 52 ILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKK 111
Query: 932 SLNL-LKMRNTEFIVALNKVDR 952
+L L LK IV +NK+DR
Sbjct: 112 ALELGLKP-----IVVINKIDR 128
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 414 DLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEK 473
++ ++LA +G A + K A + ++ ++ AA KK +
Sbjct: 186 EIGRVLAAVGAANAKKAAKTPAAKSGA-KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKT 244
Query: 474 EKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKR 533
KAA A K+ K A KK K+ K +K + + A+ K+ +K
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
+ A+ KR K K+ +K+ KK+
Sbjct: 305 AGSKAKAT--------------AKAPKRGAKGKKAKKVTKKR 332
|
Length = 333 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER-KRLEELERQAEEAKRRKKEK 566
++ ++V + +E + ++R+EE + +KEE+++ +R +L + + E +R+ +EK
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
Query: 567 EKEKLLKK 574
E++K +K
Sbjct: 315 ERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 43/255 (16%), Positives = 109/255 (42%), Gaps = 6/255 (2%)
Query: 294 SAFDLLENEDEDDDEKKDKDEEDEPIIFT---DKKKKTKSSKKTVSSFSEVLLDEENVVE 350
S D ++ D++++E++D+ EDE I D +++SS + +S +E+ + E
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Query: 351 DAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQ 410
+ S T+++ D S V+ FK+++ + ++ +++ ++ E Q
Sbjct: 167 EEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQ 226
Query: 411 EEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKE 470
++ + K + G G ++++ E P D+K + E + K+ +
Sbjct: 227 DDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVK 286
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
KE + K +D+Q+ + E + K + + + + E+
Sbjct: 287 KEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDK---VKLDEPVLEGVDLESPKELSSFEK 343
Query: 531 KKREEEERLRKEEEE 545
++ + ++++ + E+E
Sbjct: 344 RQAKLKQQIEQLEKE 358
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 12/204 (5%)
Query: 45 EPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGN 104
+ EE +GK K+L+ +D+D E + + + KKK K KN
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Query: 105 NALSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAA 164
K + G D D D+ DS D +G+ S + S
Sbjct: 255 LDDDK---KGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLS------ 305
Query: 165 FDAVDGGSESEVIDDDHSVEESDDDDDDVVEKSKKGGKKKSGTTGFSASAFDLLDDEDED 224
+ E E +D EE ++++ + K K KK G D D D+
Sbjct: 306 -PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN--GLDKDDSDSGDDS 362
Query: 225 VREDKDEEDEPVIFTDKKKKSKKS 248
D D ED + T KK+K K
Sbjct: 363 DDSDIDGEDSVSLVTAKKQKEPKK 386
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 27/268 (10%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D +E + E+E+ E K+++ K K K K A+ + K E + K + KSK
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGK----ASKLRKPKLKKKEKKKKKSSADKSK 1190
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR-----EEEERLRKEEEERKRLEELERQAEEA 559
+ + + E + + +K +E++ +K + ++ ++ L+ + +
Sbjct: 1191 KASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ ++ ++ +EGK ++ A + G + +K+
Sbjct: 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPE 679
+ + S K+ + + K K + KQ + +
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ------------------ASASQSSRL 1352
Query: 680 IADAPKENEVEEEDDDDDEEWDAKSWDD 707
+ K+ +DDDD E D +D
Sbjct: 1353 LRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
|
Length = 1388 |
| >gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 4e-04
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 478 AAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE----ERKKR 533
A+ + +D++ + A +G G K + +++ A RK E E+K+
Sbjct: 401 ASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRI 460
Query: 534 EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL-------LTGKQK 586
E ER +E ER+R+E +ER+ E +R ++E+ + L++ + +L L +
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRL 520
Query: 587 EEARR----LEAMRNQFLAKGIP 605
E+ARR L+ M N A G P
Sbjct: 521 EKARRNSYFLKGMENGLSAGGGP 543
|
Length = 1021 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 4/258 (1%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E + +E ++ KK E + K+ + E + + + +++
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEI 254
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ + + A+ K+ +EEE+ +K +EE +L E + +++ K E+ K
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Query: 573 KKKQEGKLLTGK-QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+K +E + K +KE + E + + E + + ++K +
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEE---KPEIADAPKENE 688
K +S + K+E L + E E E EE K E + K E
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE 434
Query: 689 VEEEDDDDDEEWDAKSWD 706
EE + + + +
Sbjct: 435 ELEESLETKQGKLTEEKE 452
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELKANA----- 883
I+ H+D GKT L D N+ G AG I++++ G + + +E+ R + NA
Sbjct: 24 IVAHIDHGKTTLSD-----NLLAG-AGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 884 --TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR 939
+ L+ IDTPGH F +R D AI+VV + G+ PQT L
Sbjct: 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE 137
Query: 940 NTEFIVALNKVDRL 953
N + ++ +NKVDRL
Sbjct: 138 NVKPVLFINKVDRL 151
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
KK+ K +EKE+E++ E K+ A E ++ E+K ++ RE + L
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERL---KALAEEEER--------ERKRKEERREGRAVLQ 77
Query: 523 RRKEAEERKKREEEERLRKEEEER----KRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
+ E E++++EE E +E E+ +R++E + + KR K++K +E++ + +E
Sbjct: 78 EQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEER 137
Query: 579 KLLTGKQKEEARRLEAMRNQFLAK 602
++KE R E ++ +
Sbjct: 138 IERKEEEKEREREEELKILEYQRE 161
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVG----------------EEEKEESAASKKKKKKK 469
P P E V P A + G EE K + + K + K
Sbjct: 541 PTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKP 600
Query: 470 EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK---- 525
E++++++ D+ + + + +G+ E + +++ + Q A R
Sbjct: 601 ERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAE 660
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAEEAK 560
E+ + ++E+++ + E +R+R +E + +EAK
Sbjct: 661 VTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAK 695
|
Length = 1068 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-04
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 8/210 (3%)
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
G Q+ + +K E+ EE + ++++ K+ EK+ A E
Sbjct: 58 GAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE--RLKAQE 115
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE 544
++Q + + + + + +K + + ++ EA + AE K + E +K EE
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Query: 545 ERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGI 604
K EE + +AE A KK+ E E ++ K K E + A + A+
Sbjct: 176 AAKAAEEAKAKAEAAA-AKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAE-- 232
Query: 605 PLPTGDKEAASKRPKYQTKKKSAHHQANGA 634
A +K K K+A +A A
Sbjct: 233 ---KKKAAAKAKADKAAAAAKAAERKAAAA 259
|
Length = 387 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 522 ARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
RK + R+ EEEE++ K EE +R EE + + EE K+ ++E + KL ++Q KL
Sbjct: 257 VLRKVDKTRE--EEEEKILKAAEE-ERQEEAQEKKEEKKKEEREAKLAKLSPEEQR-KLE 312
Query: 582 TGKQKEEARR 591
++K++AR+
Sbjct: 313 EKERKKQARK 322
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
D E++ EE++ E A K++K+KK +E+ + +++ + E E K +
Sbjct: 102 DEIIERIQEEDEAE-AQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQR 160
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKR----EEEERLRKEEEERKRLEELERQAEEAK 560
+K ++ E R++E E R +EE +EE + R + + + E +
Sbjct: 161 ---EKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKE 217
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEE-ARRLEAMRNQ 598
R+K+++E EK ++KQE + +Q EE RL+ R +
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 443 PPDAADEKVGEEEKEESAASKKKKKKKE----------KEKEKKAAAAAAAEDKQQGKSE 492
P++ DE+ GE+E + KKKK+ K K+K+ AA + A + K
Sbjct: 65 EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEAL-ARRKEAEE-RKKREEEERLRKEEEERKRL- 549
+ K + +EA R KE E RKK + + R RKE+++ K L
Sbjct: 125 ERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELT 184
Query: 550 -EELERQAEEAKR-------RKKEKEKEKLLKKKQEGKLLTGKQKEE 588
EE +A+E +R R +E+E+E KKK + + L ++ E
Sbjct: 185 QEERLAEAKETERINLKSLERYEEQEEE---KKKAKIQALKKRRLYE 228
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
KK +K E ++A +++EAEE ++ E ++ K E ERK EELE + E+ K ++ K
Sbjct: 5 AKKRAKL--EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 567 EKEKLLKKKQE 577
E+E+ +K+QE
Sbjct: 63 EREEQARKEQE 73
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 74/357 (20%), Positives = 128/357 (35%), Gaps = 67/357 (18%)
Query: 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL---------- 879
+ GHVD GK+ L+ + + +G+ + E R + ++
Sbjct: 122 VAGHVDHGKSTLVGVLVTGRLDDGDGA---TRSYLDVQKHEVERGLSADISLRVYGFDDG 178
Query: 880 ----------KANATLKVPG----LLVIDTPGHESF--TNLRSRGSGLCDIAILVVDIMH 923
+A V + +DT GHE + T +R D +LVV
Sbjct: 179 KVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD 238
Query: 924 GLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983
G+ T E L + IV + K+D + R +V+ I ++
Sbjct: 239 GVTKMTKEHLGIALAMELPVIVVVTKIDMV---PDDRFQGVVEEISAL---------LKR 286
Query: 984 V-QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
V +I +K+ K I TS+++GEG+ DLL K
Sbjct: 287 VGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL-DLLDEFFLLLPKRRR--W 343
Query: 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP- 1101
+ ++ + G GT + + +G+LH GD LL P
Sbjct: 344 DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGD---------------TVLLGPFKD 388
Query: 1102 --MKELRVKGTYLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGPDDDLEDVKE 1153
+E+ VK +HH ++ +A+ I I +G+E G+ V+ D + V+E
Sbjct: 389 GKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGM-VLSAGADPKAVRE 444
|
Length = 527 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 36/169 (21%), Positives = 51/169 (30%), Gaps = 9/169 (5%)
Query: 502 KSKGPEKK--MSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
K G E K S E ++EAEE K E EE E EE + E E
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPK 619
+ + E + EA + K K+ K +
Sbjct: 85 AAEAAAAAEAAARPAEDE-----AARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAAR 139
Query: 620 YQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+ K + + + K+K EK EV + ET V E
Sbjct: 140 GGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR--EVVIPETITVAE 186
|
Length = 746 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E Q ++ EK ++E+ A++ ++ +K E ++ E A
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA----KAKQAAEAKAKAEAEAEK 142
Query: 445 DAADE---KVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDG 501
A +E + EE K ++AA + KKK E +K+ +A A A AE K + K+E + K
Sbjct: 143 KAKEEAKKQAEEEAKAKAAA-EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAA 201
Query: 502 KSKGPEKKMSKQVREMQEALARRKEAEERKKREEE 536
K+K + +K EA A ERK E E
Sbjct: 202 KAKAAAEAAAKA---EAEAAAAAAAEAERKADEAE 233
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 30/238 (12%)
Query: 436 QPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVE 495
PP D ++ A+ + ++ A A + +A E
Sbjct: 2 SPPASAGGGDRKGKRTRNNGPATIAS------GFDPTALERGAKALRELESSPHAKKAFE 55
Query: 496 TKKNDGKSKGPEKKMSKQVREMQEALA----RRKEAEERKKREEEERLRKEEEERKRLE- 550
K K++ E + + E Q+A A R EAEER+K +E+ ++E++R + +
Sbjct: 56 LSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQ--TQQEQQRAQYQD 113
Query: 551 ELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGD 610
EL R+ + + ++ ++ E+LLK Q+E R EAMR + I +
Sbjct: 114 ELARKRYQKELEQQRRQNEELLK----------MQEESVLRQEAMRRA-TEEEILEMRRE 162
Query: 611 KEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+ + + +A G E +E E +E L E E V E
Sbjct: 163 TIEEEAELERENIRAKIEAEARGRAK------EERENEDINREMLKLKANEERETVLE 214
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 45/208 (21%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
++K E+E+ R + +++ E+ +A L Q+E+ + D +E +E
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRA----QQEEAE----------DEREEL--DE 203
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
+ + + ++K+++KEKE+ ++ Q+ + E +E K+ ++ +
Sbjct: 204 LRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEER------LQEERAEE 257
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK 574
+E + ++ +E ++E E+ R + E +R ELE+Q EE + R+ + +E+L
Sbjct: 258 EAERERMLEKQAEDEELEQENAEKRRMKRLEHRR--ELEQQIEEKEERRAAEREEEL--- 312
Query: 575 KQEGKLLTGKQKEEARRLEAMRNQFLAK 602
+EG+ L ++ E R+E R + L +
Sbjct: 313 -EEGERLREEEAERQARIEEERQRLLKE 339
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 8e-04
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 511 SKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK ++ +EA+ + K E+K REE ER +++E+ER+R E ER+AE A +
Sbjct: 575 SKLAKKREEAVEKAKREAEQKAREEREREKEKEKERER--EREREAERAAK 623
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-04
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 30/154 (19%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
EE A ++ KKE E KK A A E+ + ++E ++
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL-----------------ERE 70
Query: 514 VREMQEALARRKEAEERKKREEEERL-RKEEEERKRLEELERQAEEAKRRKK---EKEKE 569
++E + L R ER+ + EE L RK E K+ E LE++ +E ++K EKE+E
Sbjct: 71 LKERRNELQRL----ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126
Query: 570 ---KLLKKKQEGKLLTGKQKEEARR--LEAMRNQ 598
+ ++++E + ++G +EEA+ LE + +
Sbjct: 127 LEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-04
Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 465 KKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARR 524
K K++E+ +EK+ + + + ++ + + ++ +++ E++ + +
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 525 KEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLL 581
+ ER +RE +++RK+ +R+E LE++ EE K+R +E E++ +K L
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLEL 515
Query: 582 TGKQKE 587
+GK
Sbjct: 516 SGKGTP 521
|
Length = 652 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 9e-04
Identities = 40/234 (17%), Positives = 96/234 (41%), Gaps = 20/234 (8%)
Query: 357 DVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTA-QEEDDL 415
G V T+ + + V ++ K + + A + ++++ +++ SE Q+E
Sbjct: 27 GSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLERLARREERRDERFSEALERQKEFKP 86
Query: 416 EKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK------------ 463
L + +E + + EE +E +K
Sbjct: 87 TSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEE 146
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
+K++KE E E++ + ++ G+ + K + + ++ + +
Sbjct: 147 CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLK 206
Query: 524 RKEA-------EERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEK 570
+K+ E +KKREE ++ +EEE+R++ EE +R++ E + +++ KE+ +
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIE 260
|
Length = 431 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 5/157 (3%)
Query: 502 KSKGPEKKMSKQVREMQEALA----RRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ +KK +Q E+Q+ A R K+ E+ + +E++ + EE ++ + ++QAE
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK-QKQAE 135
Query: 558 EAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR 617
EA + K K + + K EA++ A + EAA+K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Query: 618 PKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
KK A + A K+ + + K
Sbjct: 196 AAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
|
Length = 387 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 13/249 (5%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
E KK+ + KE+ A + K E +K K + + + R
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
A + A ++KRE E + +EE+ + + + +A K+K + ++
Sbjct: 63 AAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEE 122
Query: 577 EGKLLTGKQKEEAR-RLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV 635
E K A+ + A+ Q + ++E ++ K K +A +A A
Sbjct: 123 EKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAK---AKAAAAAKAKAAA 179
Query: 636 PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDD 695
K+ + E+ E +E V E EK + K + A K+ + D
Sbjct: 180 LAKQKAAEAGEGTEE---------VTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDS 230
Query: 696 DDEEWDAKS 704
DE+ AK+
Sbjct: 231 GDEDAKAKA 239
|
Length = 430 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 36/201 (17%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 334 TVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKN 393
VS + ++ VVE + D V+ ++ D ES + + + + +
Sbjct: 168 NVSDVDTDSISDKKVVE--ALREDNEKGVNFRRDMTDLKERESQE-DAKRAQQLKEELDK 224
Query: 394 KKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGE 453
K+ +K + +++ +D+ +K E+ Q QE K +P + +P + D++V E
Sbjct: 225 KQIDADKAQQKADFA---QDNADKQRDEVRQ--KQQEAKNLPKPADTSSPKE--DKQVAE 277
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+K E ++ + KK ++E KA A + KQ+ K+ E + + +++ + +++
Sbjct: 278 NQKREIEKAQIEIKKNDEEA-LKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAED 336
Query: 514 VREMQEALARRKEAEERKKRE 534
+++ + + + + +
Sbjct: 337 LQKTKPQVEAQPTSLNEDAID 357
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 33/138 (23%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E+E++E +++ + + +E +++AA +++ + E ++ + K+K ++ K
Sbjct: 40 EQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEK 99
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
Q +E QE + ++KE E + REE ER+R E E+ + E ER +++K E+++
Sbjct: 100 QEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERL-------ERKKRLEEIM 152
Query: 573 KKKQEGKLLTGKQKEEAR 590
K+ ++ ++ +KE+ +
Sbjct: 153 KRTRKSEVSPQVKKEDPK 170
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 9/219 (4%)
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
E + + SEA+E +K K ++ +S+ R MQE E E ++ E+EE + E
Sbjct: 68 ERRDERFSEALERQKEF-KPTSTDQSLSEPSRRMQEDSG--AENETVEEEEKEESREERE 124
Query: 544 EERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKG 603
E + + + + R +E +KE+ + +E + EE +
Sbjct: 125 EVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTEN 184
Query: 604 IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIE----SKEKEQEKQETLLEVD 659
G + A + K K K Q A+ L+E + K E+E+Q E
Sbjct: 185 TFSRGGAEGAQVEAGKEFEKLK--QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEA 242
Query: 660 VGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDE 698
++ + EE L E + A+A ++ + ED ++
Sbjct: 243 DRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
|
Length = 431 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 8/188 (4%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E EK A + KK E K A AAA + + K A P+
Sbjct: 463 EREKAAREA--RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVI 520
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
RE ++A AR ++AE++ + + R + ++A + + +E+
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK--AKKAAQQAANAEAEEEVDPK 578
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQAN 632
K + K K+ A++ + + K+AA + K K A QAN
Sbjct: 579 KAAVAAAIARAKAKKAAQQAASAEPE----EQVAEVDPKKAAVAAAIARAKAKKAEQQAN 634
Query: 633 GAVPLKED 640
D
Sbjct: 635 AEPEEPVD 642
|
Length = 695 |
| >gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 46/200 (23%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 392 KNKKKKKEKEKPRSERTAQEEDDLEKIL-AELGQGPAPQEEKVQVQPPEPVAPPDAADEK 450
+ +++K+E+ K R ++ +E E +E + + + + P A + K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 451 VGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKM 510
V + E++ K KKKK+K+K E +++ E E K + + K K
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKA 128
Query: 511 SKQV---------REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
+ + +++AL R+++ +++ K+E +ER K E+ K+ E +++ E K+
Sbjct: 129 LAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEK--KKAERQKKREENLKK 186
Query: 562 RKKEKEKEKLLKKKQEGKLL 581
RK +K+ +K K K++G++L
Sbjct: 187 RKDDKKNKKKKKAKKKGRIL 206
|
The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 450 KVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQG-KSEAVETKKNDGKSKGPEK 508
+ + EK + K+ K K +E + + ED + ++ E K+ + E+
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 509 KMSKQVREMQEALARR-KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ + EAL R E EE K+R EE + R E E LE L+ + EE +E
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEEL------RE 278
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSA 627
E+LL++ +E + + E LE + + + K KS
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGL-----------RALLEELEELLEKLKSL 327
Query: 628 HHQANGAVPLKEDSIESKEKEQEKQETL 655
+ E E+ E++ L
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNEL 355
|
Length = 908 |
| >gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR) | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 29/231 (12%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
+ K +KKK+EKEK R + ++ +A PA + V + PE P D
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSLGTESDEDIA-----PAQMVDIVTEEMPENALPSDED 148
Query: 448 DEKVGEEEK-------------EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
D+ + + E+ K + + K EK A + K+ K E
Sbjct: 149 DKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKK 208
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL--------RKEEEER 546
E +K K K KK + + + AL + +E L E +
Sbjct: 209 EKEKERDKDK---KKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDE 265
Query: 547 KRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRN 597
+ E E + K +KK++ KEK KKK++ + + ++N
Sbjct: 266 PKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQN 316
|
This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 473 KEKKAAAAAAAEDKQQGKSEAVET-KKNDGKS-----KGPEKKMSKQVREMQEALARRKE 526
KE A A +KQ+ K + T ++N + + PE + + E+++ K
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPE--LHAENAEIKKTRTAEKN 341
Query: 527 AEE-RKKREEEERLRKEEE-ERKRLEELERQAEEAKRRKKEKE-KEKLLKKKQE 577
+ RKK ++R E E R+ +E A+ R+ + K+K L
Sbjct: 342 EAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASP 395
|
Length = 429 |
| >gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 464 KKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALAR 523
K+ + K+ K+KK + ++ ++E + + + +K +K+ + A+
Sbjct: 21 KRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAK 80
Query: 524 RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++EAE+ K++EE E E++R E +++A EAK K+EK+
Sbjct: 81 KEEAEKEKEKEERFMKALAEAEKERAELEKKKA-EAKLMKEEKK 123
|
This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.001
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCI---RGT-----NVQEG--EAGGITQQIGATYFPAE 870
E LR+ I+ HVD GKT L+D + GT QE ++ + ++ G T A+
Sbjct: 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITIL-AK 59
Query: 871 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI 930
N + + + N ++DTPGH F R + D +LVVD G PQT
Sbjct: 60 NTAIKWNDYRIN---------IVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR 110
Query: 931 ESLNLLKMRNTEFIVALNKVDR 952
+ IV +NKVDR
Sbjct: 111 FVTKKAFAYGLKPIVVINKVDR 132
|
Length = 607 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 5/168 (2%)
Query: 462 SKKKKKK--KEKEKEKKAAAAAAAEDKQQGKSE--AVETKKNDGKSKGPEKKMSKQVREM 517
SK + + KE K E + KS VE ++ K + + + E
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEAR-KEEAKREAEEEAKAEA 60
Query: 518 QEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577
+EA A E E + + + E E R AE+ R E + KK
Sbjct: 61 EEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAA 120
Query: 578 GKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
K K K++ + +A R KG + +R K + +K
Sbjct: 121 KKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKP 168
|
Length = 746 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 13/191 (6%)
Query: 522 ARRKEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEG 578
RRKE E + +R E R E E ++L+ LERQAE+A+R K+ K + + L+
Sbjct: 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELEL---- 227
Query: 579 KLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAV--- 635
LL + +E LE ++ + L E K + + + +
Sbjct: 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEEL 286
Query: 636 --PLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEED 693
L + E EQ+KQ + E + E L E A + E+EE+
Sbjct: 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
Query: 694 DDDDEEWDAKS 704
++ EE ++
Sbjct: 347 EELKEELESLE 357
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEE----DDLEKILAELGQGPAPQEEKVQVQPPEP 440
+ A+ + K+ +KE+ + ++ EE L++ AE A K + +
Sbjct: 95 KQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAK 154
Query: 441 VAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND 500
A A ++K E+ A+KK + +K+ E +AAA AAAE K++ ++EA + +
Sbjct: 155 RAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Query: 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL 552
K K + + +A A K A E+ + + +++L
Sbjct: 215 AKKKAAAEAKAAA----AKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDL 262
|
Length = 387 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 18/190 (9%)
Query: 518 QEALARRKEAEERKKR----EEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
Q++ A++ E + +KK EE + + E+ER + E ER + +++K+ +E EK +
Sbjct: 70 QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL-KAQEQQKQAEEAEKQAQ 128
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
+Q KQ+EE R A + A+ K A+ A +A
Sbjct: 129 LEQ-------KQQEEQARKAAAEQKKKAEA------AKAKAAAEAAKLKAAAEAKKKAEE 175
Query: 634 AVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEED 693
A E++ E K++ E + E E+ EK A A ++ E++
Sbjct: 176 AAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKK 235
Query: 694 DDDDEEWDAK 703
+ D
Sbjct: 236 AAAKAKADKA 245
|
Length = 387 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 6/194 (3%)
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
+AE A + +K+ +KL K + +T KEE + + + + +
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFIT---KEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
A + K+ + E + +K ++ +
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 675 EEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNV-KGAFDDEEADSEPEPLVKKEI 733
+ A +++ +++DD DD++ D D+ + D+E + + E +++
Sbjct: 124 IDVLN--QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Query: 734 KSAIPSPRDAGEVY 747
D +
Sbjct: 182 SDDDDFVWDEDDSE 195
|
Length = 509 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 27/136 (19%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 463 KKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALA 522
+++++ +E+ +E++ +++ ++EA E ++ +KK+ +++ E E
Sbjct: 86 RRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK-------QKKLREEIDEFNEERI 138
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLT 582
RKE E+ ++REEE ++ + + E+ EE ++ +KE+E +L +++
Sbjct: 139 ERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQE------ 192
Query: 583 GKQKEEARRLEAMRNQ 598
+ ++E L+ +R
Sbjct: 193 -EAEDEREELDELRAD 207
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 38/171 (22%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA--EDKQQGKSEAVETKKNDGK 502
+ +++ EEE+ ++ A ++++++K KE+ ++ A E++++ + E E + + +
Sbjct: 40 ERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQERE 99
Query: 503 SKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAK-- 560
++ ++++E EA A+ K +++K REE + +E ERK E+ + EE K
Sbjct: 100 QM---DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKIL 156
Query: 561 -------RRKKEKEKEKLLKKKQEGKLLT--GKQKEEARRLEAMRNQFLAK 602
R++E+E E+ +K+++ + + Q+EEA ++ A
Sbjct: 157 EYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRAD 207
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 27/217 (12%)
Query: 365 KQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQ 424
K S D S+ E +++EKE+ R ER EE +
Sbjct: 85 KPTSTDQSLSEPSRRMQEDSGAE----NETVEEEEKEESREEREEVEET----------E 130
Query: 425 GPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAE 484
G E+K + E +EK E E+EE ++ + K
Sbjct: 131 GVTKSEQKNDWRDAEE----CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTF 186
Query: 485 DKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKR--EEEERLRKE 542
+ + VE K K K KQ E +K+ EER+K EEE+R ++E
Sbjct: 187 SRGGAEGAQVEAGKEFEKLK------QKQQEAALELEELKKKREERRKVLEEEEQRRKQE 240
Query: 543 EEERKRLEELERQAE-EAKRRKKEKEKEKLLKKKQEG 578
E +RK EE E++ E R++ + EK K ++G
Sbjct: 241 EADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDG 277
|
Length = 431 |
| >gnl|CDD|239667 cd03696, selB_II, selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 1302 IVLGVDVVEGIAKVGTPICIPQRDFIDIG---RIASIENNHKPVDTAKKGQKAAIKIAGS 1358
+V G V+ G KVG + I +G R+ SI+ + K V+ AK G + A+ + G
Sbjct: 17 VVTGT-VLSGSVKVGDKVEIL-----PLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGV 70
Query: 1359 NSEE 1362
++++
Sbjct: 71 DAKD 74
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. Length = 83 |
| >gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAA--AAAAAEDKQQGKSEAVETKKNDGK 502
D GEEE+ E+ ++KK ++K++KA A +K K +A K
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Query: 503 SKGPEKK 509
G KK
Sbjct: 449 PDGETKK 455
|
This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
E+ + + ++ K+KEKE E+ + E +E + E K +
Sbjct: 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK-------EVKELE 234
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEE----EERKRLEELERQAEEAKRRKKEKE- 567
+++E E L + E+ E KR+ EE++R+ E E +K +EELE + +E K K++ E
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Query: 568 -------KEKLLKKKQEGKLLTGKQKEEARRLEA 594
E+ L + +E + + +EE +E
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
Length = 880 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 502 KSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKR 561
SK KK+ K V + ++ +R+E ++ KK++ +KEEEE + E+ E + EE +
Sbjct: 404 GSKKATKKIKKIVEKAEK---KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 562 -RKKEKEKEKLLKKKQ 576
++EKE+E+ KKKQ
Sbjct: 461 EAEEEKEEEEEKKKKQ 476
|
Length = 482 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVV--DIMHGLEPQTIESLNLLK-MRNTEFIVALN 948
++D PGH F G+ D A+LVV D G+ PQT E + L + + + IVA+N
Sbjct: 88 IVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147
Query: 949 KVD 951
K+D
Sbjct: 148 KMD 150
|
Length = 425 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 2/147 (1%)
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+G P A A + ++ +A + K + AAAAA A
Sbjct: 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA 118
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQ-VREMQEALARRKEAEERKKREEEERLRKE 542
+ ++ + +G +K + + EA A E E ++R+E R R +
Sbjct: 119 ASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRR-RGD 177
Query: 543 EEERKRLEELERQAEEAKRRKKEKEKE 569
E+R+ E + +R + +++
Sbjct: 178 REDRQAEAERGERGRREERGRDGDDRD 204
|
Length = 672 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 65/352 (18%), Positives = 141/352 (40%), Gaps = 30/352 (8%)
Query: 365 KQQSGDSSIVESDDFKVNKGEVVAQTSKNKK-----KKKEKEKPRSERTAQEED--DLEK 417
K+ IV D V G V+ S +++E E+ + EE +LEK
Sbjct: 639 KKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
Query: 418 ILAEL---GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKE 474
LAEL + + E+++ + E A + + E E ++ + ++ E
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
Query: 475 KKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKRE 534
+A E ++ + E E + + + +++ ++++ ++EAL + E
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 535 EEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEA 594
+ E +R+ ER+ E+ + + +E ++ + L + +E +E
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEE 870
Query: 595 MRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQET 654
+ ++ A + ++ A R + + + + L+ + E +EK + +
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 655 L--LEVDVGE-TEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAK 703
L LEV + E++ E SLT+EE +E + +DD+EE +
Sbjct: 931 LEGLEVRIDNLQERLSEEYSLTLEEAE---------ALENKIEDDEEEARRR 973
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.003
Identities = 49/253 (19%), Positives = 93/253 (36%), Gaps = 12/253 (4%)
Query: 269 KDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKT 328
+ + + GGR + LE +DEDD ++ DK ED + KKKK
Sbjct: 188 NGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKK 247
Query: 329 KSSKKTVSSFSE---VLLDEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGE 385
+ K + D++ D+ D D S S + E
Sbjct: 248 LAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPE 307
Query: 386 VVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPD 445
+ A K + ++ E + E +EE L K +L + +K + + + D
Sbjct: 308 IPA---KPEIEQDEDSEESEEEKNEEEGGLSKKGKKL---KKLKGKKNGLDKDDSDSGDD 361
Query: 446 AADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK---NDGK 502
+ D + E+ +KK+K+ K++E ++ + E+ + K +
Sbjct: 362 SDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGKRKAANEV 421
Query: 503 SKGPEKKMSKQVR 515
SK P +K+++
Sbjct: 422 SKSPASVPAKKLK 434
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 449 EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEK 508
EK E +EE +K+ ++ E+E + A +++ + K E +E + + EK
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK-EK 551
Query: 509 KMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEK 568
+Q++E L R ++ +E E LR ++ LEEL + +E K++ KE E+
Sbjct: 552 LQLQQLKEELRQLEDR----LQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
++ L + + E E L K ++ + + + K +
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVD 659
+ + E+ + +EK +E ++ E++
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELE 698
|
Length = 908 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 6/173 (3%)
Query: 423 GQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAA 482
G A A AA + + E +AA + A AA+A
Sbjct: 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASA 121
Query: 483 AEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE----AEERKKREEEER 538
E Q + G ++ + + E + A R E E R++ + E+
Sbjct: 122 PEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED- 180
Query: 539 LRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
R+ E ER E + + R + +E+ ++++ G+ G ++ RR
Sbjct: 181 -RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232
|
Length = 672 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 63/305 (20%), Positives = 101/305 (33%), Gaps = 96/305 (31%)
Query: 448 DEKVGEEEKEESAASKK----------KKKKKEKEKEKKAAAAAAAE------DKQQGKS 491
D++ EEE+ E SKK K K E++K K+ E D
Sbjct: 160 DDEEDEEEQPERKKSKKEVMKEVIAKSKFYKAERQKAKEEDEDLREELDDDFKDLMSLLR 219
Query: 492 EAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEE 551
K + + + ++VRE+ RR + +R K EEE +EE +RL++
Sbjct: 220 TVKPPPKPPMTPEEKDDEYDQRVREL--TFDRRAQPTDRTKTEEE----LAKEEAERLKK 273
Query: 552 LERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDK 611
L EA RL MR G++
Sbjct: 274 L-----------------------------------EAERLRRMR------------GEE 286
Query: 612 EAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGES 671
E + D ++ + + + L + E+ E+G
Sbjct: 287 EDD---------------EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVD 331
Query: 672 LTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKK 731
+E E D E E E+ D D+EE + D D+++ + E E KK
Sbjct: 332 ---DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD---------DEDDEEEEEEEKEKK 379
Query: 732 EIKSA 736
+ KSA
Sbjct: 380 KKKSA 384
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
K E + K AE +REEEE L++E EER E+ ER E+A+ R+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 572 LKKKQEGKLLTGKQKEEAR 590
+ + E + +++EEAR
Sbjct: 431 FEDEDELEEAQPEEEEEAR 449
|
Length = 449 |
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 454 EEKEESAASKKKKKKK--EKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
KE + + + KEK +A A A + + + + K+ + + E+
Sbjct: 183 NSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQ 242
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKE---EEERKRLEELERQAEEAKR 561
+ V+++ E + EAE K E+ER+ + E+E E + +AE ++
Sbjct: 243 EHVKQLIEKM----EAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQK 291
|
Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.003
Identities = 63/321 (19%), Positives = 120/321 (37%), Gaps = 31/321 (9%)
Query: 47 QEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKNGGNNA 106
+E ++N +K ++ K + E +++D GKK NN
Sbjct: 397 RESSEIDNVGRKTRRQPTGKAIAEETSREDELSFDDSDVSTSDENEDVDFTGKKGAINNE 456
Query: 107 LSKSAFELLEGADKDDDDDDSGDKLSKGKYVSLASKGKTKEGLKKGWNKSGSLFAAAAFD 166
E+ +D D+ + + +G LASK + K+G N +F +
Sbjct: 457 DESDNEEVAFDSDSQFDESEGNLRWKEG----LASKLAYSQSGKRGRN-IQKIFYDESLS 511
Query: 167 AVDGGSESEVIDDDHSVEE--SDDDDDDVVEKSKKGGKK-KSGTTGFSASAFDLLDDEDE 223
+ E + S + D+ +D + SK + S S F+ L +
Sbjct: 512 PEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELKKKWS 571
Query: 224 DVRE-----------DKDEEDEPVIFTDKKKKSKKSGKNSSTFDLLVNE---NDDVKEDK 269
+ + D E +E +I D+K + ++ D + E + E++
Sbjct: 572 SLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENE 631
Query: 270 DEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFTDKKKKTK 329
+ DE T++++ + K +R + E E+ D EKKD D E +K+K +
Sbjct: 632 ESADEVDYETEREENARKKEELRGN----FELEERGDPEKKDVDWYTE-----EKRKIEE 682
Query: 330 SSKKTVSSFSEVLLDEENVVE 350
K S F ++ + V+E
Sbjct: 683 QLKINRSEFETMVPESRVVIE 703
|
Length = 1077 |
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 459 SAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQ 518
S+ KKK K+K+++KE + +++ GK + + ++ + E + + +
Sbjct: 219 SSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSG 278
Query: 519 EALARRKEAEERKKREEEERLRK-------------------EEEERKRL---------- 549
E + +E E K++E+ +RL+K EEEE +
Sbjct: 279 E-RSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEE 337
Query: 550 --EELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKE 587
EE+ + +RR + + +K K +EG L+T K E
Sbjct: 338 EKEEVTVSPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYE 377
|
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
E K+ +Q +E E K+A+ +KK ++ ++++E K EE AE +R KEK
Sbjct: 78 EVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREE----AELRQRLAKEK 133
Query: 567 EKEKLLKK-KQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
+E +K +Q K T K K+EA + AK + +E A KR + KK
Sbjct: 134 YEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVS--QEEAKKRLQEWELKK 191
Query: 626 SAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657
++ E + K+++KQ+ E
Sbjct: 192 LKQ--------QQQKREEERRKQRKKQQEEEE 215
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.004
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 3/223 (1%)
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
E EE +E ++ +++ E +E+ A E ++ K+ +E + + ++
Sbjct: 213 KELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIR 272
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++ +++ + E L + E E +RE EE + E R LEELE E+ K ++ E
Sbjct: 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLE 332
Query: 568 K--EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKK 625
K EKL K + E + L ++ E A+ LE + L + + + E A +R K +
Sbjct: 333 KLEEKLEKLESELEELAEEKNELAKLLEERLKE-LEERLEELEKELEKALERLKQLEEAI 391
Query: 626 SAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEE 668
+ + + I+ + +E EK+ LE ++ E E+ +
Sbjct: 392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434
|
Length = 908 |
| >gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 430 EEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQG 489
QV + +A +EE + K++E E + E ++G
Sbjct: 12 ALPFQVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREG 71
Query: 490 KSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERL 539
E + +G +G E+ + + + + +A + E K E++L
Sbjct: 72 YEEGFQLGYEEGFEEGQEEG--RVLERLAKLIAEFQAELEALKEVVEKQL 119
|
Length = 234 |
| >gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
+ K + E +T++ + GP + K R ++EAL RR A R KR E L +E
Sbjct: 121 KKKGLKEIEEEKTRRAGYRRTGPPSNLDK-KRTLREALKRRI-ALGRPKRRELRELEEEL 178
Query: 544 EERKRLEELERQAEEAKRRKK 564
E + LEE+ER + +
Sbjct: 179 EALEALEEIERLRALRAKIDR 199
|
Length = 401 |
| >gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR) | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.004
Identities = 31/105 (29%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 452 GEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMS 511
G++E E AAS +++ +++E +A AE + + + + +T++ +++ K
Sbjct: 550 GQQESTEEAASLRQELTQQQEVYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAV 609
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEER--KRLEELER 554
+R++Q A+ KE + +R +EE RKEE +R +RL+ELER
Sbjct: 610 VSLRQIQRQAAQEKERNQELRRLQEEA-RKEEGQRLSRRLQELER 653
|
This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation. Length = 739 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1415 | |||
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 100.0 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 100.0 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 100.0 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 100.0 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 100.0 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.97 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.97 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.97 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.97 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.97 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.97 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.97 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.96 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.96 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.96 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.96 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.96 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.96 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.96 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.96 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.96 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.96 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.96 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.95 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.95 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.95 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.95 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.95 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.94 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.94 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.94 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.93 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.93 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.93 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.93 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.93 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.93 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.93 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.93 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.92 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.92 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.91 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.91 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.91 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.91 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.91 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.9 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.9 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.9 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.89 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.88 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.87 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.87 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.87 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.86 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.86 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.85 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.85 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.84 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 99.84 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.84 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.84 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.84 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.83 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.83 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.83 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 99.82 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.82 | |
| cd03703 | 110 | aeIF5B_II aeIF5B_II: This family represents the do | 99.82 | |
| PF11987 | 108 | IF-2: Translation-initiation factor 2; InterPro: I | 99.82 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.81 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.81 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.8 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.78 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.77 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.76 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.76 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.76 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.76 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.75 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.73 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.73 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.72 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.72 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.72 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.71 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.71 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.71 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.7 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.7 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.69 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.69 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.69 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.68 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.68 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.68 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.68 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.68 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.68 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.68 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.67 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.67 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.67 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.67 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.67 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.67 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.67 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.66 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.66 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.66 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.66 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.66 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.66 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.66 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.66 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.65 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.65 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.65 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.65 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.65 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.65 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.65 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.65 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.65 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.64 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.64 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.64 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.64 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.64 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.64 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.64 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.64 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.63 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.63 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.63 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.63 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.63 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.63 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.63 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.63 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.63 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.63 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.63 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.63 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.62 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.62 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.62 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.62 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.62 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.62 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.62 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.62 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.62 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.62 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.62 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.61 | |
| PF14578 | 81 | GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 | 99.61 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.61 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.61 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.61 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.61 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.61 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.61 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.61 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.61 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.61 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.61 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.61 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.61 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.61 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.6 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.6 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.6 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 99.6 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.6 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.6 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.6 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.59 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.59 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.59 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.59 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.59 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.59 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.59 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.59 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.59 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.58 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.58 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.58 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.58 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.58 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.58 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.57 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.57 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.57 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.57 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.57 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.57 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.56 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.56 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.56 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.56 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.56 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.56 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.55 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.55 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.55 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.55 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.55 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.55 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.55 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.54 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.54 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.53 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.53 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.53 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.52 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.52 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.52 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.51 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.51 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.51 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.51 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.5 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.5 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.49 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.48 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.48 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.48 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.47 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.46 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.46 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.46 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.46 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.45 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.44 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.44 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.39 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.39 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.38 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.38 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.38 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.38 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.36 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.36 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.36 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.34 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.34 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.34 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.29 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.29 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.29 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.27 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.27 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.26 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.24 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.24 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.22 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.21 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.21 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 99.21 | |
| PRK13768 | 253 | GTPase; Provisional | 99.2 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.2 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.19 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.19 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.18 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.17 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.16 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.15 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.14 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.13 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.12 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.1 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.09 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 99.08 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.08 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.05 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.03 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.03 | |
| PTZ00099 | 176 | rab6; Provisional | 99.02 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.01 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.0 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 98.99 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.99 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 98.95 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.93 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.93 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.92 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.91 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.89 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.89 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.88 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.87 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.87 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.85 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.79 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.79 | |
| cd03702 | 95 | IF2_mtIF2_II This family represents the domain II | 98.76 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.76 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.76 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.75 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.71 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.71 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.67 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.66 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.65 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.63 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.62 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.6 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.6 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 98.6 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.6 | |
| cd03701 | 95 | IF2_IF5B_II IF2_IF5B_II: This family represents th | 98.54 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.54 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.5 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.48 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.41 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.39 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.37 | |
| KOG0052 | 391 | consensus Translation elongation factor EF-1 alpha | 98.36 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.29 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.25 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.23 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.2 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.17 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.17 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.13 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.12 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.09 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.09 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.08 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.08 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.08 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.08 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.08 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 98.06 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.04 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.04 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.04 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.02 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.01 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.97 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.95 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.95 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.9 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.86 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.84 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.82 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.81 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.81 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.76 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.74 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 97.74 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.74 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.72 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 97.72 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.72 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.7 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 97.7 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.7 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.69 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 97.68 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 97.65 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.61 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 97.58 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.58 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.56 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.55 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.55 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.53 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.53 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.52 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.52 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.5 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.5 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 97.49 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.48 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.47 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 97.47 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 97.43 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.43 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.43 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.43 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.42 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.41 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.4 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.39 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.38 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.36 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 97.36 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.35 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.32 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.31 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.31 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.27 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 97.26 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 97.26 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.23 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 97.21 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.18 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.1 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.08 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.05 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 96.99 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 96.97 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 96.91 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 96.9 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 96.88 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 96.85 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.85 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.84 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 96.84 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.82 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 96.81 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 96.81 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.78 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 96.74 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.73 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 96.73 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 96.72 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 96.61 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 96.58 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.54 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 96.54 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.48 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 96.47 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.44 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 96.44 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 96.42 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 96.39 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.38 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.33 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.32 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 96.28 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.26 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.22 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 96.22 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 96.21 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.21 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 96.17 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.14 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 96.02 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.02 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 96.01 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 96.01 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 95.93 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 95.8 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 95.77 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.76 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 95.72 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 95.68 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 95.68 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 95.44 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 95.43 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 95.42 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 95.42 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 95.35 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.33 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 95.27 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.24 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 95.22 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.15 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 95.14 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 94.96 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 94.85 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 94.83 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.78 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 94.75 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 94.7 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 94.7 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 94.62 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.6 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 94.54 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.52 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 94.49 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 94.46 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 94.28 | |
| cd03688 | 113 | eIF2_gamma_II eIF2_gamma_II: this subfamily repres | 94.11 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 94.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.05 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 93.69 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 93.69 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 93.68 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 93.63 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 93.58 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 93.45 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 93.43 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 93.4 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 93.4 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 93.35 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 93.35 |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-186 Score=1625.27 Aligned_cols=850 Identities=69% Similarity=1.029 Sum_probs=728.4
Q ss_pred hcCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000570 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQE 577 (1415)
Q Consensus 498 k~~~~~~~~~~k~~~~~~~~~e~~~~~~~eee~~~reeEE~~r~eEEe~~~~ee~er~~ee~~~~k~~~~kek~~~~k~e 577 (1415)
++....++..++.++.++++|++++++++++|+++|++||+.|+++|++++++++++++++.++++++++++++++++++
T Consensus 200 kk~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~Kae 279 (1064)
T KOG1144|consen 200 KKEAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAE 279 (1064)
T ss_pred ccchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444566667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcccccCccchhhhhhhccccCCCCCCcccc-hhhh---------
Q 000570 578 GKLLTGKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDS-IESK--------- 645 (1415)
Q Consensus 578 ~~~~~~k~~~e~~~~~~~~~~~~~~G--~~~~~~~~~~~~Kk~~~~~kkk~~~~~~~~~~~~~~~~-~~~~--------- 645 (1415)
|+|+|++|+++++++++.+.+|+++| +.++.... .++|+|+|.+++++..+.......++... .++.
T Consensus 280 GklLTakQK~~~a~aea~l~~ll~sg~~~~va~kdg-~~kKrpiY~nKKk~~rq~~~~~~s~~~~~~~~~~e~~~~~~~~ 358 (1064)
T KOG1144|consen 280 GKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDG-DSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKENHAGDVGS 358 (1064)
T ss_pred cccchHhhHHHHHHHHHHHHHHHhcCCCCCCCcccC-CcccCcccccccccccccccchhhhhhcccCchhhhccCCCCC
Confidence 99999999999999999999999997 44444433 37899999999987544433322222100 0000
Q ss_pred -hhHHHhhhhhcccCccccccccccccccccCCccccCCCCCccccccCCCcchhhhccCccccccccCCCCCcccccCC
Q 000570 646 -EKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSE 724 (1415)
Q Consensus 646 -~~~~e~~e~~~~~ddwE~~~~ee~e~~~~~~~~e~~~~~~e~~~eee~ee~~d~we~~s~e~~~~~~~~~~~~ee~~~~ 724 (1415)
..+.....++...++|+.++.+.... .......|++..+...+...|+|+....+..
T Consensus 359 ~d~~~~~~~e~~~~~e~e~~~~dv~~e------~g~~e~~~~~k~~~~~~~d~dd~ee~~~e~~---------------- 416 (1064)
T KOG1144|consen 359 VDTEEVDLEEDSNTDEKEGTPEDVDQE------EGEEEDDWDAKVDLAIDGDDDDDEEELQEEV---------------- 416 (1064)
T ss_pred CcchhhccccccCCcccccCCCChhhh------hcccchhhhccccccccccccchhhhhchhh----------------
Confidence 00000111233456666554322100 0001111333322211112222222111110
Q ss_pred CCchhhhhhhccCCCCCCcccceeeeccccchhhhhhhhHHHHHhhhhcccCCchhhccccCCCCCCcchhhhhhccccc
Q 000570 725 PEPLVKKEIKSAIPSPRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQDAVTRKKEPA 804 (1415)
Q Consensus 725 ~~~~~~~~~k~~~rsp~~~~~~IcCIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1415)
.+..++...++...+ .+ + ..........+++..++.++.
T Consensus 417 -----~~e~~e~~~~~e~s~--------------------------------~~--~-~~a~~k~~~~~~d~~t~~~~~- 455 (1064)
T KOG1144|consen 417 -----DKELKEAEEEEEDSE--------------------------------KP--T-EDAAVKAISKVEDAATRTKRA- 455 (1064)
T ss_pred -----hhcccccccchhhcc--------------------------------cc--c-cccccccccccchhhhhhhhc-
Confidence 001111000000000 00 0 000000011122222222211
Q ss_pred ccCCCCCcCCCCcccccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccc
Q 000570 805 AKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
+...+........+..++|+||||||||||+|||.||++|+++||+.|++|||||+||++|||..+|++++..+.....
T Consensus 456 -~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 456 -KIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred -chhccCchhhccccchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhh
Confidence 1222333444556788999999999999999999999999999999999999999999999999999999988876654
Q ss_pred --cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 --LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 --~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
++.|+|++||||||++|+++|+||+++||+||||||+|||+.|||+++|++|+++++||||+|||||++|+|..++++
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l 1042 (1415)
+|..+|++|..+++++|..|+..|+.+|.++|||..|||.|.+++.+|++||+||++|+||++||.+|++|+|.+|..+|
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccc
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122 (1415)
Q Consensus 1043 ~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~g 1122 (1415)
.|.+.++|+||+|+.++|+||||+++|.||+||.||.|||||++|||+|+||+||+|+||+++||++.|+||++|++|+|
T Consensus 695 ~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~G 774 (1064)
T KOG1144|consen 695 AYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQG 774 (1064)
T ss_pred hhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccCCCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEe
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGI 1202 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~ 1202 (1415)
|+|++.||++++||++++|+.++++++++++.+|.+|.++|++|++++.||||||+|||||||||+||++ ++|||.++
T Consensus 775 iKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqastlgslealleflk~--~kIPv~gi 852 (1064)
T KOG1144|consen 775 IKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSRIDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGI 852 (1064)
T ss_pred chhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHHhhccCCceEEEecccchHHHHHHHHhh--cCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccce
Q 000570 1203 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEA 1282 (1415)
Q Consensus 1203 ~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~a 1282 (1415)
||||||++|||.|++|+++.+.||+||||+|+|..+|+.+|..+||+||+++|||||||.|+.|++++++.++.+..+.|
T Consensus 853 ~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~A 932 (1064)
T KOG1144|consen 853 GIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEA 932 (1064)
T ss_pred cccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1362 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~ 1362 (1415)
||||+|+|||+||||+++|+|+||.|.+|+|++||||||+..++|++|+|+||++||++|+.|++|++|||+|.+.| +.
T Consensus 933 vFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~~-~e 1011 (1064)
T KOG1144|consen 933 VFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEASN-GE 1011 (1064)
T ss_pred eeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEecCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 56
Q ss_pred ccccccccccCCCeEEEccchhhHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 000570 1363 QQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1415 (1415)
Q Consensus 1363 ~~~~~gr~f~~~d~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~~~i~ 1415 (1415)
+|+||||||++.|+|||+|||+|||+|+.+||++||.++|+||++||++|+|+
T Consensus 1012 ~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr~el~~~dw~Lv~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 1012 EQKMFGRHFDMEDILYSHISRRSIDILKKAFRDELTKDDWQLVVKLKKLFGII 1064 (1064)
T ss_pred CcchhhcccCccchHHHHhhHhhHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 78999999999999999999999999999999999999999999999999996
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-105 Score=983.02 Aligned_cols=575 Identities=40% Similarity=0.702 Sum_probs=524.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecc--cccccCCCCEEEEeCCCCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~--~~~~~~~~~l~iIDTPGHe 899 (1415)
.+|+|+|+||||+||||||||++|+++++..++.+|+|+++|++++++..+...+.... ....+..++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 47999999999999999999999999999999999999999999998765432211111 1122344679999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+.+|..+...+...++..|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEE
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1057 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk~ 1057 (1415)
...+..++..|.++||..++|+...+|++.+++|||||+||+||++|+.+|..+++.+|...|. +..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 9999999999999999999999988999999999999999999999999999888887766554 46789999999999
Q ss_pred EcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeee-eeeehhhhccccceeeeccccccccCC
Q 000570 1058 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1136 (1415)
Q Consensus 1058 ~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~-~~~~~keV~aa~gv~i~~~gL~~~~aG 1136 (1415)
+.|+|++++++|++|+|++||+|++++++||++++||+|++|+|++++|+.. .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999764 578899999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHHH
Q 000570 1137 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1216 (1415)
Q Consensus 1137 ~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A~ 1216 (1415)
+.|+|++ ++++..+++.++.++..+ .+.....||||||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9997774 445666666666665544 4566788999999999999999999997 5699999999999999999999
Q ss_pred hhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccc
Q 000570 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296 (1415)
Q Consensus 1217 ~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf 1296 (1415)
+|.+++|.||+||||||+++++|+.+|+++||+|++|+|||||||+|++||.+++++.+.+....+++||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99988999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCe
Q 000570 1297 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1376 (1415)
Q Consensus 1297 ~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~ 1376 (1415)
+.++|+||||+|++|+|++|+++|.+++.++ |+|.||+|++++|++|++|+||||+|++| ||||||.+||+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD~ 546 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAIKDV-------VYGRTIHEGDT 546 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEEeCc-------cccCCCCCCCE
Confidence 9999999999999999999999976667444 99999999999999999999999999985 89999999999
Q ss_pred EEEccchhhHHHHHHHhhccCCHHHHHHHHHHhh
Q 000570 1377 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1410 (1415)
Q Consensus 1377 l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~ 1410 (1415)
|||.|||+||+.|+++||++||.++|++|.++-.
T Consensus 547 l~~~i~~~~~~~l~~~~~~~l~~~~~~~~~ei~~ 580 (590)
T TIGR00491 547 LYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAE 580 (590)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-103 Score=1000.04 Aligned_cols=566 Identities=40% Similarity=0.672 Sum_probs=527.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeeccc--ccccCCCCEEEEeCCCCcchhhH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~--~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..+|++| |||||++||+++|+.+++||||||||++++|++.+...|..+.. ...++.|+|+|||||||+.|..+
T Consensus 467 ~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~l 542 (1049)
T PRK14845 467 ANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSL 542 (1049)
T ss_pred eeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHH
Confidence 3578888 99999999999999999999999999999999877665554322 23456789999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.++++.||++|||||+++|+++||.+++.+++..++|+|||+||+|++++|..+++.+|...+..|.+.++.++..++.
T Consensus 543 r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 543 RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEEEcCcc
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk~~~G~G 1062 (1415)
.++.+|.++|++.++||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|+|
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G 702 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLG 702 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCce
Confidence 99999999999999999999999999999999999999999999998888876655554 4567899999999999999
Q ss_pred eEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeee-eeeehhhhccccceeeeccccccccCCCceEE
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~-~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v 1141 (1415)
+|++++|++|+|++||+|++|++++|++++||+|++|.||+++|+.+ .|.+++++.+++||+|+++||+.++||+.|+|
T Consensus 703 ~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v 782 (1049)
T PRK14845 703 TTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRI 782 (1049)
T ss_pred eEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999665 78999999999999999999999999999999
Q ss_pred eCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHHHhhhhc
Q 000570 1142 VGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEK 1221 (1415)
Q Consensus 1142 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~ 1221 (1415)
+.++++++.+++.++.++..+ .+.....||||||||+||||||+.+|+. .+|||++++||+||++||++|++|+++
T Consensus 783 ~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~~~ 858 (1049)
T PRK14845 783 VPTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYKQE 858 (1049)
T ss_pred eCCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhhcc
Confidence 999999988888888877665 3566788999999999999999999997 679999999999999999999999999
Q ss_pred ccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccccCCCC
Q 000570 1222 KKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDP 1301 (1415)
Q Consensus 1222 ~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf~~~~p 1301 (1415)
+|+||+||||||+++++|+.+|++.||+||+|+|||||||+|++||.+++++.+.+....+++||.++|+|.|||+.++|
T Consensus 859 ~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~ 938 (1049)
T PRK14845 859 NPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNP 938 (1049)
T ss_pred CCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred eEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEEEcc
Q 000570 1302 IVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHI 1381 (1415)
Q Consensus 1302 ~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~s~i 1381 (1415)
+||||+|++|+|++|+|||..++.+ +|+|.||+|++++|++|++|+||||+|.++ +|||||++||+||+.|
T Consensus 939 ~IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~-------~~gr~~~~gD~l~~~i 1009 (1049)
T PRK14845 939 AIVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDEGETLYVDV 1009 (1049)
T ss_pred eEEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEEecc-------cccCCCCCCCEEEEec
Confidence 9999999999999999998766644 499999999999999999999999999875 8999999999999999
Q ss_pred chhhHHHHHHHhhccCCHHHHHHHHHHh
Q 000570 1382 SRKSIDVLKANYRDDLSMDEWRLLVKLK 1409 (1415)
Q Consensus 1382 ~r~~i~~lk~~~~~~~s~~~~~~~~~lk 1409 (1415)
+|.+|+.|+++||++||.++|++|.++-
T Consensus 1010 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 1037 (1049)
T PRK14845 1010 PESHVRELYHKYMDRLRDDEKEALKMYM 1037 (1049)
T ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999999999987543
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-102 Score=959.50 Aligned_cols=577 Identities=45% Similarity=0.730 Sum_probs=528.3
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeec-c-cccccCCCCEEEEeCCCC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-K-ANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v-~-~~~~~~~~~l~iIDTPGH 898 (1415)
..+|+|+|+||||+||||||||++|+++++..++.+||||++|++++++.......... . ....+..++++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 36899999999999999999999999999999999999999999998876432111110 0 012334567999999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+.|..++.++++.||++|||||+.+|+++||++++.++...++|+|||+||+|+++.|....+..|..++..+..+++..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEE
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1056 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~--~~~~~~~~VlEvk 1056 (1415)
|...+..+...|..+||+.++||...+|++.+++||+||++|+||.+|+..+..+++..|...+. +..+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999999988999999999999999999999999998888877766554 4567999999999
Q ss_pred EEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccce-eeeeeeehhhhccccceeeeccccccccC
Q 000570 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1135 (1415)
Q Consensus 1057 ~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~r-vk~~~~~~keV~aa~gv~i~~~gL~~~~a 1135 (1415)
.++|+|++++++|.+|+|++||.|++++..|++.++||+|++|.|++++| +.+.|.+++++.++++++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999889999999999999999999 77889999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhccCCceeeeEEeeeCccchhhHHHH
Q 000570 1136 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1215 (1415)
Q Consensus 1136 G~~~~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~i~~~~iG~v~~~DV~~A 1215 (1415)
|+.|+|+.+ +++..+.+.++.++..+ .+.....||||||||+||||||+++|.. .+|+|++++|||||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEI--RIETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhc--cccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 55666666666666554 2556778999999999999999999987 689999999999999999999
Q ss_pred HhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeeccccc
Q 000570 1216 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1295 (1415)
Q Consensus 1216 ~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~v 1295 (1415)
++|++++|.||+||||||+++++|+++|++.||+|++|+|||||||+|++||.+++++...+....+++||.++|+|.+|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999988887788899999999999999
Q ss_pred ccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCC
Q 000570 1296 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1375 (1415)
Q Consensus 1296 f~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d 1375 (1415)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|++++|++|++|+||||+|.+| +|||||.+||
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD 547 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISIDGP-------TVGRQIKEGD 547 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEEecc-------cccCCCCCCC
Confidence 99999999999999999999999886577 45699999999999999999999999999986 6999999999
Q ss_pred eEEEccchhhHHHHHHHhhccCCHHHHHHHHHHhhh
Q 000570 1376 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1411 (1415)
Q Consensus 1376 ~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~ 1411 (1415)
+|||+++|.++++|+++||++|+.++|+||.++-++
T Consensus 548 ~i~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 583 (586)
T PRK04004 548 ILYVDIPEEHAKILEQELKDELSDDEKEALKEILEI 583 (586)
T ss_pred EEEEEEEehhHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987665
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-96 Score=867.61 Aligned_cols=501 Identities=37% Similarity=0.482 Sum_probs=441.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.+|+|+||||||||||||||||+||+++|+.+++||||||||+|+++++.. ..++|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999997632 2367999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
++||.||++.||++||||++++|++|||+|+|++++.+++|||||+||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
...+..+|.++||+++.| ++.+.+||+||+||+||++||..|+.+.+.. ..+..+..+++|+|+|++..+|+
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEVL-ELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-hhhcCCCCcceEEEEEEEeccCC
Confidence 245667888899998865 6779999999999999999999998766544 44556678899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeeccccccccCCCceEE
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v 1141 (1415)
|++++++|++|||+.||.|++|+.+|++.+.++.++.|-+....+....+...++|.+|.+..++++++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999999988888877788888899999999999999999999988887
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhhccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEeeeCccchhhHHHHH
Q 000570 1142 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1216 (1415)
Q Consensus 1142 ~~--~e~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~iG~v~~~DV~~A~ 1216 (1415)
+. ...........+...+..+..+.+....||+|||||+||||||..+|+ .+++++.|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 65 222222333333333444332334456899999999999999998874 5678888999999999999999999
Q ss_pred hhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhhccceeeceeeeecccccc
Q 000570 1217 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1296 (1415)
Q Consensus 1217 ~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~~~~av~p~~l~i~~~~vf 1296 (1415)
+ ++|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++++..++......+|+.+.++|
T Consensus 356 a------s~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~---- 425 (509)
T COG0532 356 A------SDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFKLP---- 425 (509)
T ss_pred h------cCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccceEEEEEEEcC----
Confidence 8 579999999999999999999999999999999999999999999999998877764444666654444
Q ss_pred cCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCC
Q 000570 1297 NKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1375 (1415)
Q Consensus 1297 ~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d 1375 (1415)
+.|.|+||+|++|.|++|+++|+ |++.+||.|+|.||++++++|.+|++|+||||+|+|| +||.+||
T Consensus 426 --k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~----------~di~~gD 493 (509)
T COG0532 426 --KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENY----------RDIKEGD 493 (509)
T ss_pred --CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCc----------ccCCCCC
Confidence 47999999999999999999997 6999999999999999999999999999999999986 4999999
Q ss_pred eEEEccchhhHHHHH
Q 000570 1376 ELVSHISRKSIDVLK 1390 (1415)
Q Consensus 1376 ~l~s~i~r~~i~~lk 1390 (1415)
+||+++++.+.+.|+
T Consensus 494 ~le~~~~~~~~r~l~ 508 (509)
T COG0532 494 ILEVFEPVEVKRTLK 508 (509)
T ss_pred EEEEEEEEeechhhc
Confidence 999999999888764
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-84 Score=747.11 Aligned_cols=479 Identities=30% Similarity=0.468 Sum_probs=406.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
....|+|+|+||||||||||||||+||++.|+.+++||||||||+|.++... +..|+|+|||||.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~---------------G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS---------------GKSITFLDTPGHA 212 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC---------------CCEEEEecCCcHH
Confidence 3456999999999999999999999999999999999999999999987653 2459999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|..||.||+..+||+||||.+.+|++|||.++|.+++..++|+||+|||||++ .++
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~---------------- 269 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GAN---------------- 269 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCC----------------
Confidence 999999999999999999999999999999999999999999999999999985 344
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEc
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIE 1059 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~ 1059 (1415)
+..++.+|..+|+..+ ++|+++++||+||++|+||+.|.+.++. +...|..+..+..+++++|+|+...+
T Consensus 270 ---pekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill-~Ae~mdLkA~p~g~~eg~VIES~vdk 339 (683)
T KOG1145|consen 270 ---PEKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILL-LAEVMDLKADPKGPAEGWVIESSVDK 339 (683)
T ss_pred ---HHHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHH-HHHHhhcccCCCCCceEEEEEeeecC
Confidence 3567778899998876 6799999999999999999999988874 34667778888999999999999999
Q ss_pred CcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeecccccc-ccCCC
Q 000570 1060 GHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGT 1137 (1415)
Q Consensus 1060 G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~-~~aG~ 1137 (1415)
|+|.+.+++|..|||+.|+.+ |||. .+++||+|++... +.|. +.++.++-+.||.. ++||+
T Consensus 340 g~G~~aT~iVkrGTLkKG~vl-V~G~---~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP~aGD 402 (683)
T KOG1145|consen 340 GRGPVATVIVKRGTLKKGSVL-VAGK---SWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLPIAGD 402 (683)
T ss_pred CccceeEEEEeccccccccEE-EEec---hhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCCCCCc
Confidence 999999999999999999955 5654 4899999986542 2222 22344555568877 79999
Q ss_pred ceEEeCCCccHHHHHHHHHHH-----HHH--------------HH--------h-----hhhccC----CceEEecCCcc
Q 000570 1138 GLYVVGPDDDLEDVKEEAMED-----MKS--------------VM--------S-----RIDKSG----EGVCVQASTLG 1181 (1415)
Q Consensus 1138 ~~~v~~~e~~~~~~~~~~~~~-----~~~--------------~~--------~-----~i~~~~----~gv~vkadt~G 1181 (1415)
-++.|.+++.++.+-..+... .+. .+ . +++... .+||||+|++|
T Consensus 403 ~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~G 482 (683)
T KOG1145|consen 403 EVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQG 482 (683)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccc
Confidence 999999998776552211100 000 00 0 122222 46999999999
Q ss_pred cHHHHHHHh---ccCCceeeeEEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhc
Q 000570 1182 SLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYH 1258 (1415)
Q Consensus 1182 SlEAl~~~L---~~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~ 1258 (1415)
|+|||++.| .+++|++.|++++||+||++||.+|++ +.|||+||||+.++...++|...||+|+.|+||||
T Consensus 483 S~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~ 556 (683)
T KOG1145|consen 483 SAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYR 556 (683)
T ss_pred hHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehhHHHH
Confidence 999998876 567899999999999999999999997 78999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHH-hhccceeeceeeeecccccccC--CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEee
Q 000570 1259 LFDQFTAYINNLKEEKKR-EAADEAVFPCVLKILPNCVFNK--KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIAS 1334 (1415)
Q Consensus 1259 L~d~~~~~~~~~~~~~~~-e~~~~av~p~~l~i~~~~vf~~--~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~S 1334 (1415)
|||++++.|...+++..+ +..|+|. ++.+| .|+. +.-.||||+|.+|.|.+.+.|++ |+|.+||.|.|.|
T Consensus 557 LieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F---~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~S 630 (683)
T KOG1145|consen 557 LIEDVRELLSERLPPVEEQEVVGEAE---VLATF---DIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDS 630 (683)
T ss_pred HHHHHHHHHHhhCCCceEEeecccee---eeeeE---eeccccccccccceEeecceEeecceEEEEeCCcEEEEechhH
Confidence 999999999988877654 4568885 34443 3332 33359999999999999999996 8999999999999
Q ss_pred ccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEEEccchh
Q 000570 1335 IENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1384 (1415)
Q Consensus 1335 lk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~r~ 1384 (1415)
|+|++++|.+|++|.||||.+.++|. .|.+||.|.|+-+|.
T Consensus 631 lKh~KedV~~vkkg~ECGl~~~d~~~---------~f~~GD~i~~ye~k~ 671 (683)
T KOG1145|consen 631 LKHLKEDVTEVKKGHECGLTFDDGNE---------DFKEGDKIQCYEKKR 671 (683)
T ss_pred HhhhhhhhhhhcCCCeeeeEeccCCc---------CCCcCCEEEEeehhh
Confidence 99999999999999999999998873 699999999998665
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-78 Score=747.06 Aligned_cols=474 Identities=32% Similarity=0.460 Sum_probs=391.4
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
...|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... ..|+|||||||++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 4569999999999999999999999999999999999999999987765321 1599999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..+|.++++.+|++|||||+++|+++||.++|.+++..++|+|||+||+|+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G 1060 (1415)
..+...|...|+... .|+..+++||+||++|+||.+|+.+|..+ ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 122333444444332 34566899999999999999999998643 22222223456789999999999999
Q ss_pred cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecccccc-ccCCCce
Q 000570 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1139 (1415)
Q Consensus 1061 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~-~~aG~~~ 1139 (1415)
+|++++++|++|+|++||.|+++ +.+++||+|++++.. ..+++.+++ .+.+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~----~~~~kVr~l~~~~g~----------~v~~a~~g~--~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVG----AAYGRVRAMIDENGK----------SVKEAGPSK--PVEILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEEC----CCccEEEEEECCCCC----------CCCEECCCC--EEEEeCCCCCCCCCCEE
Confidence 99999999999999999999874 346789998875421 122333444 444558987 4999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEecCCcccHHHHHHHhc---cCCceeeeE
Q 000570 1140 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1200 (1415)
Q Consensus 1140 ~v~~~e~~~~~~~~~~~~~-------------~~~~~~~i~---~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~ 1200 (1415)
+++.++++++.+.+..... +..++..+. ....+|||||||+||||||+++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999998877664432221 122222222 244689999999999999988764 567899999
Q ss_pred EeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHh-hc
Q 000570 1201 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AA 1279 (1415)
Q Consensus 1201 ~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e-~~ 1279 (1415)
+++||+||++||++|++ ++|+||||||++++.++++|++.||+|++|+|||||+|+|++||.+++++...+ ..
T Consensus 419 ~~~vG~i~~~Dv~~a~~------~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASA------SNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHh------cCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 99999999999999998 489999999999999999999999999999999999999999999998887544 34
Q ss_pred cceeeceeeeecccccccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEec
Q 000570 1280 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357 (1415)
Q Consensus 1280 ~~av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~ 1357 (1415)
+.|. |+. ||+. +.|+||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|++|++|+||||.|.+
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 564 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN 564 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec
Confidence 5553 333 7775 55999999999999999999997 789999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCCeEEEccc
Q 000570 1358 SNSEEQQKMFGRHFDIEDELVSHIS 1382 (1415)
Q Consensus 1358 ~~~~~~~~~~gr~f~~~d~l~s~i~ 1382 (1415)
|| +|.+||+|+++-.
T Consensus 565 ~~----------~~~~gD~i~~~~~ 579 (587)
T TIGR00487 565 YN----------DIKEGDIIEAFEV 579 (587)
T ss_pred cc----------cCCCCCEEEEEEE
Confidence 86 7999999999753
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-77 Score=748.16 Aligned_cols=472 Identities=33% Similarity=0.476 Sum_probs=394.6
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
...|+|+|+||||+||||||||++|+++++..++++|||+++|++.+.+.. ..|+|||||||..
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 467999999999999999999999999999999999999999998876642 2499999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..++.++++.+|++|||||+++|+++||.++|.++..+++|+|||+||||+.. +++
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-------a~~---------------- 406 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-------ANP---------------- 406 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-------cCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 121
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1060 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G 1060 (1415)
..+...|...++..+ .|++.+++||+||++|.||.+|+.+|.... ..+.....+..++.+.|++++.++|
T Consensus 407 ---e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 407 ---DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ---HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 112223333343322 345678999999999999999999987643 2222234456678999999999999
Q ss_pred cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccccc-cCCCc
Q 000570 1061 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1138 (1415)
Q Consensus 1061 ~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~~-~aG~~ 1138 (1415)
+|++++++|++|+|+.||.|++ |+.+++||.|++.+. ..|. +.+|..+.+.||... .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~----g~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVA----GTTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEE----CCcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 9999999999999999999876 356888998875431 1222 345666667799886 99999
Q ss_pred eEEeCCCccHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEecCCcccHHHHHHHh---ccCCceeee
Q 000570 1139 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1199 (1415)
Q Consensus 1139 ~~v~~~e~~~~~~~~~~~~-------------~~~~~~~~i~~~---~~gv~vkadt~GSlEAl~~~L---~~~~~~i~i 1199 (1415)
|+++.++..++.+.+.... .+..++..+... ..+|||||||+||+|||..+| .+++++|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999998877766432211 133333344222 258999999999999998765 567899999
Q ss_pred EEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhh-
Q 000570 1200 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1278 (1415)
Q Consensus 1200 ~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~- 1278 (1415)
++++||+||++||++|++ ++|+||||||++++.++++|+..||.|++|+|||||||+|+.||.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999997 6899999999999999999999999999999999999999999999988776554
Q ss_pred ccceeeceeeeecccccccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEe
Q 000570 1279 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1356 (1415)
Q Consensus 1279 ~~~av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~ 1356 (1415)
.|.|. |. .||+. +.|.||||+|++|.|++|+++|| |+|.+||.|+|.||+|++++|.+|++|+||||.|.
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~ 765 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLE 765 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEee
Confidence 56664 33 26774 45999999999999999999998 78999999999999999999999999999999999
Q ss_pred cCCCccccccccccccCCCeEEEccc
Q 000570 1357 GSNSEEQQKMFGRHFDIEDELVSHIS 1382 (1415)
Q Consensus 1357 ~~~~~~~~~~~gr~f~~~d~l~s~i~ 1382 (1415)
+|| +|.+||+|+++..
T Consensus 766 ~~~----------d~~~gD~ie~~~~ 781 (787)
T PRK05306 766 NYN----------DIKEGDIIEAYEM 781 (787)
T ss_pred ccc----------cCCCCCEEEEEEE
Confidence 997 7999999999853
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-75 Score=727.09 Aligned_cols=474 Identities=30% Similarity=0.436 Sum_probs=389.2
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
..|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... .....|+|||||||+.|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~------------~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK------------DENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec------------CCceEEEEEECCcHHHH
Confidence 458999999999999999999999999999889999999999887654310 01246999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+++..||++|||||+.+|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999962 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
..+...|..+++... .+++.+|+|++||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+|.
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 122223333332221 2356789999999999999999999876642 2222234456789999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccc-cccCCCce
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLE-HAIAGTGL 1139 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~-~~~aG~~~ 1139 (1415)
|++++++|.+|+|+.||.|+++ +.+++||.|+.+.. ..+. +.+|..+.+.||. .+.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998763 35678888875431 1222 3456666778995 46789999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHH---HhhhhccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEee
Q 000570 1140 YVVGPDDDLEDVKEEAMEDM----------KSV---MSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1203 (1415)
Q Consensus 1140 ~v~~~e~~~~~~~~~~~~~~----------~~~---~~~i~~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~ 1203 (1415)
+|+.++..++.+.+...... ..+ +........+|||||||+||||||+++|. +++++|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999887776644322111 111 11123345689999999999999988864 567999999999
Q ss_pred eCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHHHcCCeEEEcchhhchHHHHHHHHhhhhHHHHHhh-ccce
Q 000570 1204 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1282 (1415)
Q Consensus 1204 iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~e~-~~~a 1282 (1415)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|+++|.+++++...+. .|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999998775543 4555
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1361 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~ 1361 (1415)
.|. .||+.++|.||||+|++|.|++|+++|| |++.+||.|+|.||+|++++|.+|++|+||||.|.+||
T Consensus 653 ------~v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-- 722 (742)
T CHL00189 653 ------EVK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-- 722 (742)
T ss_pred ------Eee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC--
Confidence 343 3788777999999999999999999998 78999999999999999999999999999999999998
Q ss_pred cccccccccccCCCeEEEcc
Q 000570 1362 EQQKMFGRHFDIEDELVSHI 1381 (1415)
Q Consensus 1362 ~~~~~~gr~f~~~d~l~s~i 1381 (1415)
.|.+||+|.++.
T Consensus 723 --------d~~~gD~ie~y~ 734 (742)
T CHL00189 723 --------LWQSGDKIHAFE 734 (742)
T ss_pred --------CCCcCCEEEEEE
Confidence 699999998864
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=304.75 Aligned_cols=259 Identities=26% Similarity=0.396 Sum_probs=201.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-------------------------------v~~geagGITq~iga~~~~~~~i~~ 874 (1415)
..++++||||||||||+.+|++.. ....+.+|+|.+++...|.++.
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k--- 84 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK--- 84 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC---
Confidence 348999999999999999998521 1122346777777777666543
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceEEE
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVA 946 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVa 946 (1415)
+.|+|||||||.+|...+..|++++|+||||||+..| +.+||++|+-+++.+|+ .+||+
T Consensus 85 -------------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 -------------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred -------------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 3599999999999999999999999999999999998 99999999999999998 78999
Q ss_pred EEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 947 INKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
+||||.+. |.. .+|.+....+...+...||+. .+++||||||++|.||...
T Consensus 152 vNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCccccc
Confidence 99999984 754 345555566666666777763 3589999999999999766
Q ss_pred HHHHHHHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcC
Q 000570 1027 LLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLT 1098 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~ 1098 (1415)
-...-||-.+.|++.|+. +.||+++|.+++.+.|.|++..++|.+|.|++|+.|++.+..
T Consensus 203 s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~------------ 270 (428)
T COG5256 203 SENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG------------ 270 (428)
T ss_pred CcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc------------
Confidence 544444445566666642 457999999999999999999999999999999999987643
Q ss_pred CCCCccceeeeeeeehhhhcccc-c--eeeeccccccccCCCceEEeCCC
Q 000570 1099 PHPMKELRVKGTYLHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1099 p~p~~e~rvk~~~~~~keV~aa~-g--v~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
...+|+++++||.++..+. | |.+.++|+.......+.++.+++
T Consensus 271 ----~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 271 ----VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred ----ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 2345777888888887664 3 66777777654444444444443
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=312.08 Aligned_cols=259 Identities=24% Similarity=0.317 Sum_probs=188.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~--v-----------------------------~~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++.. + .....+|+|.+++.+.+.+.
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 359999999999999999998521 1 11124667777665555433
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC-------ChhHHHHHHHHHhcCCc-eEEE
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 946 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVa 946 (1415)
...|+|||||||.+|...+.+|++.+|+||||||+..|+ .+||.+||.++..+++| +|||
T Consensus 84 ------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 84 ------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred ------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 346999999999999999999999999999999999998 48999999999999997 6799
Q ss_pred EEeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhh
Q 000570 947 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 947 INKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
|||||+.. +|. ...|...+..+...|...|++. ..+||||+||++|+||.+
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCccc
Confidence 99999631 332 2334445556666676666642 248999999999999975
Q ss_pred HHHHHHHHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhc
Q 000570 1026 LLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1097 (1415)
Q Consensus 1026 Ll~~L~~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll 1097 (1415)
.-..+.||..+.|.+.| ....+|++.|.+++.+.|.|++++|.|.+|+|++||.|++++++ ..
T Consensus 204 ~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~------- 274 (446)
T PTZ00141 204 KSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VT------- 274 (446)
T ss_pred CCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cE-------
Confidence 32222222222222222 23457999999999999999999999999999999999987643 22
Q ss_pred CCCCCccceeeeeeeehhhhcc---ccceeeeccccccccCCCceEEeCC
Q 000570 1098 TPHPMKELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1098 ~p~p~~e~rvk~~~~~~keV~a---a~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+|+++++|+..+.. +..+.|.+.+++......+++++.+
T Consensus 275 -------~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 275 -------TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred -------EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 345555666555543 3447777777766555566666654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=318.82 Aligned_cols=251 Identities=29% Similarity=0.439 Sum_probs=191.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.||+++||+|||||||+++|++.+. .....+|||++++..++.... ...++|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 3799999999999999999997543 334557999999877654321 1248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..|+..+|++|||||+++|+++||.+++.++...++|. |||+||||++. .. .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-------~~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-------EA--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-------HH--------------HHHH
Confidence 99999999999999999999999999999999999999985 79999999962 10 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
....+...+...++ ..+|+|||||++|.||++|+..|..+..+. .....+|++.|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233333433332 236899999999999999999987654321 12456899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cceeeeccc-cccccCCC
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQG-LEHAIAGT 1137 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~g-L~~~~aG~ 1137 (1415)
|++++|+|.+|+|++||.|.++|+. ...+|+++++|+..+..+ +.+.|.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~----------------~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVN----------------KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCC----------------CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 9999999999999999999987643 124566777777666544 336666676 66555556
Q ss_pred ceEEeCC
Q 000570 1138 GLYVVGP 1144 (1415)
Q Consensus 1138 ~~~v~~~ 1144 (1415)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 6666655
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=315.90 Aligned_cols=254 Identities=29% Similarity=0.408 Sum_probs=194.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 369999999999999999999743 3334468999999887766543 248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..++..+|++|||||+.+|+++||.+++.++...++| +|||+||||++. ... +..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~--------------~~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEE--------------IKR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHH--------------HHH
Confidence 9999999999999999999999999999999999999999 999999999962 110 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1061 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1061 (1415)
....+...+...++. ..+++||+||++|.||.+|+..|..++..... .....+|++.|..+|.+.|.
T Consensus 124 ~~~ei~~~l~~~~~~-----------~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIFL-----------KNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCCC-----------CCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 111222223322221 24799999999999999999988776543211 12356899999999999999
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cceeeeccccccccCCCc
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTG 1138 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~ 1138 (1415)
|++++|.|.+|+|++||.|+++|++ ...+|+++++|+..+..| +.+.|.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~----------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN----------------HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC----------------ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987643 134567777777766644 447788888876555555
Q ss_pred eEEeCCC
Q 000570 1139 LYVVGPD 1145 (1415)
Q Consensus 1139 ~~v~~~e 1145 (1415)
+++..+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 5555443
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=307.84 Aligned_cols=258 Identities=23% Similarity=0.298 Sum_probs=188.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~~~~~i~~~ 875 (1415)
+|+|+||+|||||||+++|+...- .....+|||.+++.++|.+.
T Consensus 9 ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~----- 83 (447)
T PLN00043 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT----- 83 (447)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-----
Confidence 499999999999999999984211 01123566666655555433
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC-------ChhHHHHHHHHHhcCCc-eEEEE
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVAL 947 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVaI 947 (1415)
.+.++|||||||.+|...+..|++.+|++|||||+..|. .+||+++|.++..+++| +|||+
T Consensus 84 -----------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 84 -----------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred -----------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 346999999999999999999999999999999999983 38999999999999995 78899
Q ss_pred Eeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 948 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 948 NKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
||||+.. .| .+..|...+..+...|...|+.. ..++|||+||++|+||.+.
T Consensus 153 NKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 153 NKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIER 204 (447)
T ss_pred EcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEecccccccccc
Confidence 9999851 12 12345555566666777777652 2479999999999999653
Q ss_pred HHHHHHHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcC
Q 000570 1027 LLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLT 1098 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~ 1098 (1415)
...+.|+-.+.|++.| ....||++.|.+++.+.|.|+++.|+|.+|+|++||.|++++++ .
T Consensus 205 ~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~--------- 273 (447)
T PLN00043 205 STNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--L--------- 273 (447)
T ss_pred ccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--C---------
Confidence 3222222222232222 12457999999999999999999999999999999999886543 1
Q ss_pred CCCCccceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1099 PHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1099 p~p~~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|+++++++..+..| ..+.|.+.+++......+++++..
T Consensus 274 -----~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 274 -----TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred -----EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 23456666666655543 347777778766555666666654
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=299.19 Aligned_cols=224 Identities=27% Similarity=0.346 Sum_probs=175.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeceeEecccccceeeeecccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
.+++|| ++|+.|+|||||||.|+|+... .+..+.+|||...-.+++.|..
T Consensus 57 ~~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~------------- 121 (650)
T KOG0462|consen 57 VENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD------------- 121 (650)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-------------
Confidence 378999 9999999999999999998421 2233467888665544443322
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
-...-|++||||||.+|+..+.|.+..||+|||||||.+|+++||...+.++..+|+.+|.||||||+. .++.
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adp 194 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADP 194 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCH
Confidence 011459999999999999999999999999999999999999999999999999999999999999995 4443
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e-~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
... ..++.+ .++. .-+++.+||++|.|+..||+.|++..+++ ...
T Consensus 195 e~V-------------------~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP---~~~ 240 (650)
T KOG0462|consen 195 ERV-------------------ENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPP---KGI 240 (650)
T ss_pred HHH-------------------HHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCC---CCC
Confidence 322 222211 1222 12799999999999999999999877654 334
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCC
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1099 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p 1099 (1415)
...||++.|++++++..+|.++.+.|.+|.|+.||.|..+.+....-.+.-.++.|
T Consensus 241 ~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p 296 (650)
T KOG0462|consen 241 RDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRP 296 (650)
T ss_pred CCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEecc
Confidence 57789999999999999999999999999999999999887653333333344444
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=300.10 Aligned_cols=256 Identities=24% Similarity=0.354 Sum_probs=182.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ...
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~~ 76 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KRH 76 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------CcE
Confidence 3499999999999999999986321 11125777877765544332 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.++++.+|++|||||+.+|+++||.++|.++..+++| +|||+||||++. ...+.
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~~--- 147 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEELL--- 147 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHHH---
Confidence 89999999999999999999999999999999999999999999999999999 678999999862 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC--------ChhhHHHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMVE 1040 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe--------GI~dLl~~L~~l~~~~l~e 1040 (1415)
......+...|...++. +..+|+||+||++|. ++..|++.|..+++.+
T Consensus 148 -----------~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~--- 203 (394)
T PRK12736 148 -----------ELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP--- 203 (394)
T ss_pred -----------HHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC---
Confidence 11112344445555543 235799999999994 4556666555443211
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
......+|++.|.++|.++|.|++++|+|.+|+|++||.|+++|... ....+|+++++|+..+..+
T Consensus 204 ~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~V~sI~~~~~~~~~a 269 (394)
T PRK12736 204 ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE--------------TQKTVVTGVEMFRKLLDEG 269 (394)
T ss_pred CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCC--------------CeEEEEEEEEECCEEccEE
Confidence 11235679999999999999999999999999999999999876421 1234566667766655544
Q ss_pred c---ceeeeccccccccCCCceEEeCC
Q 000570 1121 Q---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1121 ~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
. -+.|++.|++......+.+++.+
T Consensus 270 ~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 270 QAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred CCCCEEEEEECCCcHHhCCcceEEecC
Confidence 2 25556666654444455555543
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=299.51 Aligned_cols=259 Identities=24% Similarity=0.349 Sum_probs=183.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..+|+|+||+|||||||+++|++... .....+|||++++...+.+.. .
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~----------------~ 124 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK----------------R 124 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC----------------e
Confidence 34599999999999999999973210 122347888887766655432 3
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ...+..
T Consensus 125 ~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~~- 197 (447)
T PLN03127 125 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELLE- 197 (447)
T ss_pred EEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHHH-
Confidence 589999999999999999999999999999999999999999999999999999 578999999962 111110
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC---CCCC-------hhhHHHHHHHHHHHH
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~---tGeG-------I~dLl~~L~~l~~~~ 1037 (1415)
.+. ..+...|...++. +..+|+||+||+ +|.| ++.|++.|..+++.+
T Consensus 198 ----------~i~---~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 198 ----------LVE---MELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred ----------HHH---HHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 011 1222333333332 245899999987 4555 566666665543311
Q ss_pred HHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhh
Q 000570 1038 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1117 (1415)
Q Consensus 1038 l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV 1117 (1415)
.-....+|++.|.++|.+.|.|++++|+|.+|+|++||.|+++|.. |......+|+++++|+..+
T Consensus 255 ---~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~------------~~g~~~~~VksI~~~~~~v 319 (447)
T PLN03127 255 ---VRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR------------PGGPLKTTVTGVEMFKKIL 319 (447)
T ss_pred ---CcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC------------CCCcEEEEEEEEEEECcEe
Confidence 1123457999999999999999999999999999999999887642 1101234567777777665
Q ss_pred cccc---ceeeeccccccccCCCceEEeCC
Q 000570 1118 KAAQ---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1118 ~aa~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+. .+.|.+.|++......+++++.+
T Consensus 320 ~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 320 DQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 5443 36666667655444455555543
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=302.35 Aligned_cols=256 Identities=24% Similarity=0.323 Sum_probs=183.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|||.+++..++.+. ...
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~~ 145 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NRH 145 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------CcE
Confidence 3489999999999999999985211 22345788888776666543 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+|++.+|++|||||+..|+++||.++|.++..+++| +|||+||||++. ...+
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~---- 215 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL---- 215 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH----
Confidence 89999999999999999999999999999999999999999999999999999 788999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh------------------hhHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLLL 1030 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI------------------~dLl~~L 1030 (1415)
+......+...|...||. ...+|+||+||++|.++ +.|++.|
T Consensus 216 ----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l 275 (478)
T PLN03126 216 ----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAV 275 (478)
T ss_pred ----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHH
Confidence 111122445556666653 23589999999999644 2222222
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
..+.+ ...-....||++.|.++|.+.|.|+++.|.|.+|+|++||.|++++..... ..+|+++
T Consensus 276 ~~~~~---~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~--------------~~~VksI 338 (478)
T PLN03126 276 DSYIP---IPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETR--------------STTVTGV 338 (478)
T ss_pred HHhCC---CCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCce--------------EEEEEEE
Confidence 22110 001123467999999999999999999999999999999999987542112 2445666
Q ss_pred eeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
+.++..+..+ ..+.|.+.+++......+++++.+
T Consensus 339 ~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 339 EMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 6665555433 346676677665555556665554
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=294.26 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=182.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ...
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~~ 76 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NRH 76 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------CcE
Confidence 3499999999999999999986211 11225778877655544332 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+++..+|++|||||+..|+.+||.++|.++...++|.| ||+||||++. .....
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~~--- 147 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEELL--- 147 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHHH---
Confidence 8999999999999999999999999999999999999999999999999999966 5899999962 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~~l 1038 (1415)
......+...|...++. +..+++||+||++|. |++.|++.|..+++.+
T Consensus 148 -----------~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p- 205 (396)
T PRK12735 148 -----------ELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP- 205 (396)
T ss_pred -----------HHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC-
Confidence 11112333344444432 235899999999995 5666776665543211
Q ss_pred HHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc
Q 000570 1039 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118 (1415)
Q Consensus 1039 ~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~ 1118 (1415)
.-....+|++.|.++|.+.|.|++++|+|.+|+|++||.|++++... ....+|+++++|+..+.
T Consensus 206 --~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~v~ 269 (396)
T PRK12735 206 --ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE--------------TQKTTVTGVEMFRKLLD 269 (396)
T ss_pred --CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCC--------------CeEEEEEEEEECCeEeC
Confidence 11234679999999999999999999999999999999998876421 12345666676666555
Q ss_pred cc---cceeeeccccccccCCCceEEeCC
Q 000570 1119 AA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1119 aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+ ..+.|.+.|++......+.+++.+
T Consensus 270 ~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 270 EGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred EECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 33 335666666654444445555443
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=299.33 Aligned_cols=282 Identities=20% Similarity=0.237 Sum_probs=188.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEeccc---ccceeee--ecccc------------c
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE---NIRERTR--ELKAN------------A 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~---~i~~~t~--~v~~~------------~ 883 (1415)
.+.+|+++||+|||||||+.+|++.+. .....+|||+++|+.++.+. ....... .+... .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 345699999999999999999997654 34557899999998765321 0000000 00000 0
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCC
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~ 961 (1415)
......++|||||||+.|...+.+|++.+|++|||||+.+| +++||.+++.++..+++| +|||+||||++. .
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------~ 186 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------E 186 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------H
Confidence 00124699999999999999999999999999999999997 799999999999999985 889999999962 0
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 962 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 962 a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
. .+...+..+...|... +...+|+||+||++|.||+.|++.|...++.. .
T Consensus 187 ~---------------~~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~---~ 236 (460)
T PTZ00327 187 A---------------QAQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIP---K 236 (460)
T ss_pred H---------------HHHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---C
Confidence 1 1111222232223221 12357999999999999999999887544321 1
Q ss_pred hhcccccceEEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeee
Q 000570 1042 LTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1113 (1415)
Q Consensus 1042 l~~~~~~~~~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~ 1113 (1415)
.....++++.|..+|.+.| +|++++|.|.+|+|++||.|.+.+..-. ... ..-+.+.| ...+|++++++
T Consensus 237 r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~-~~~-~g~~~~~~-~~~~VksI~~~ 313 (460)
T PTZ00327 237 RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIIS-KDS-GGEFTCRP-IRTRIVSLFAE 313 (460)
T ss_pred CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCccc-ccc-cCcccccc-ceEEEEEEEEC
Confidence 2235678999999887765 7999999999999999999998764200 000 00000111 12467777877
Q ss_pred hhhhcccc-c--eeeecc---ccccccCCCceEEeCC
Q 000570 1114 HKQIKAAQ-G--IKITAQ---GLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1114 ~keV~aa~-g--v~i~~~---gL~~~~aG~~~~v~~~ 1144 (1415)
+..+..|. | +.|.+. ++.......+++++.+
T Consensus 314 ~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~ 350 (460)
T PTZ00327 314 NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYP 350 (460)
T ss_pred CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcC
Confidence 77666543 2 444433 3333333345555544
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=294.69 Aligned_cols=256 Identities=25% Similarity=0.342 Sum_probs=179.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
..|+|+||+|||||||+++|++... .....+|+|.++...++.+. ...
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~~ 76 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NRH 76 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------CeE
Confidence 3499999999999999999996421 11223777777766555432 245
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++. ....
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~~~---- 146 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DEEL---- 146 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HHHH----
Confidence 89999999999999999999999999999999999999999999999999999 778999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh------------------hhHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLLL 1030 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI------------------~dLl~~L 1030 (1415)
+......+...|...++. ...+|++|+||++|.++ +.|++.|
T Consensus 147 ----------~~~~~~~l~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l 206 (409)
T CHL00071 147 ----------LELVELEVRELLSKYDFP----------GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAV 206 (409)
T ss_pred ----------HHHHHHHHHHHHHHhCCC----------CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHH
Confidence 111122344455555543 13579999999999854 2333333
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
..+++. ..-....+|++.|.+++.++|.|++++|+|.+|+|++||.|+++|.... ...+|+++
T Consensus 207 ~~~~~~---p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--------------~~~~VksI 269 (409)
T CHL00071 207 DSYIPT---PERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--------------KTTTVTGL 269 (409)
T ss_pred HhhCCC---CCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--------------cEEEEEEE
Confidence 222110 0112245799999999999999999999999999999999987653211 23456666
Q ss_pred eeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
++++..+..+ .-|.|.+.+++......+.+++.+
T Consensus 270 ~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 270 EMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 6666554433 225555556554434444444433
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=292.31 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=182.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ...
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 76 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KRH 76 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------CeE
Confidence 3499999999999999999986311 11225788877765544332 235
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++..+++|+| ||+||||++. ...
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~----- 145 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE----- 145 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHH-----
Confidence 8999999999999999999999999999999999999999999999999999986 6899999962 111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~~l 1038 (1415)
.+......+...|...|+. ...+|++|+||++|. |++.|++.|..+++.+
T Consensus 146 ---------~~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p- 205 (396)
T PRK00049 146 ---------LLELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP- 205 (396)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC-
Confidence 0111112344455555542 235899999999986 4556666655432211
Q ss_pred HHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc
Q 000570 1039 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1118 (1415)
Q Consensus 1039 ~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~ 1118 (1415)
.-....||++.|.++|.++|.|++++|.|.+|+|++||.|+++|... ....+|+++.+++..+.
T Consensus 206 --~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~~ 269 (396)
T PRK00049 206 --ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD--------------TQKTTVTGVEMFRKLLD 269 (396)
T ss_pred --CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC--------------CceEEEEEEEECCcEeC
Confidence 11235679999999999999999999999999999999998876421 12345667777766555
Q ss_pred ccc---ceeeeccccccccCCCceEEeCC
Q 000570 1119 AAQ---GIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1119 aa~---gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+. .+.+.++|++....-.+.+++.+
T Consensus 270 ~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 270 EGQAGDNVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred EEcCCCEEEEEeCCCCHHHCCcceEEecC
Confidence 442 25555566654444445555443
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=296.37 Aligned_cols=258 Identities=25% Similarity=0.368 Sum_probs=184.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++.... ....+|+|.+++...+.+.
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~---- 82 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD---- 82 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC----
Confidence 44999999999999999999843211 0114667776665555433
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccC--CCChhHHHHHHHHHhcCC-ceEEEEEecc
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKVD 951 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~~v-P~IVaINKiD 951 (1415)
...|+|||||||..|...+.++++.+|++|||||+.+ |+.+||.+++.++..+++ |+|||+||+|
T Consensus 83 ------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 83 ------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred ------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 3469999999999999888889999999999999999 999999999999998887 6999999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
++. |. . ..|......+...+...|+.. ..+++||+||++|.||.++...+.
T Consensus 151 l~~-~~----~--------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~~ 201 (425)
T PRK12317 151 AVN-YD----E--------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENMP 201 (425)
T ss_pred ccc-cc----H--------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCCC
Confidence 962 21 0 111222233444444445431 246899999999999988665443
Q ss_pred HHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCc
Q 000570 1032 QWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMK 1103 (1415)
Q Consensus 1032 ~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~ 1103 (1415)
|+..+.+.+.|. ...||++.|.+++.+.|.|++++|.|.+|+|++||.|++++++ .
T Consensus 202 wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~-------------- 265 (425)
T PRK12317 202 WYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--V-------------- 265 (425)
T ss_pred cccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--C--------------
Confidence 333333433332 2457899999999999999999999999999999999987643 1
Q ss_pred cceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1104 ELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1104 e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|++++.|+..+..| ..|.|.+.+++......+.+++.+
T Consensus 266 ~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 266 VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 23566666666655543 336666666654434445555444
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=288.99 Aligned_cols=259 Identities=23% Similarity=0.339 Sum_probs=176.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..+|+|+||+|||||||+++|++... .....+|+|.++....+++. ..
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~~ 75 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------NR 75 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------CE
Confidence 34599999999999999999974311 11234788877655444322 23
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
.++|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++..+++|.| ||+||||++. ...+
T Consensus 76 ~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 146 (394)
T TIGR00485 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (394)
T ss_pred EEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC------HHHH---
Confidence 58999999999999999999999999999999999999999999999999999876 6899999962 0110
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHHHHHHH----Hhh
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTMV----EKL 1042 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~~~~l~----e~l 1042 (1415)
+......+...|...++. +..+|+||+||++|. |...+...+..++..... ...
T Consensus 147 -----------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~ 205 (394)
T TIGR00485 147 -----------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER 205 (394)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC
Confidence 111112344445444432 234799999999985 554444322222221110 011
Q ss_pred hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc-
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ- 1121 (1415)
Q Consensus 1043 ~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~- 1121 (1415)
....+|++.|.++|.++|.|++++|+|.+|+|++||.|++++.. .....+|+++++++..+..+.
T Consensus 206 ~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~--------------~~~~~~VksI~~~~~~~~~a~a 271 (394)
T TIGR00485 206 ETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK--------------DTRKTTVTGVEMFRKELDEGRA 271 (394)
T ss_pred CCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC--------------CCcEEEEEEEEECCeEEEEECC
Confidence 23457999999999999999999999999999999999886531 112345666666665554332
Q ss_pred --ceeeeccccccccCCCceEEeC
Q 000570 1122 --GIKITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1122 --gv~i~~~gL~~~~aG~~~~v~~ 1143 (1415)
.+.|.+.|++......+.+++.
T Consensus 272 Gd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 272 GDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred CCEEEEEeCCccHHHCCccEEEec
Confidence 2555555554433334444443
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=304.75 Aligned_cols=224 Identities=27% Similarity=0.305 Sum_probs=170.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeceeEecccccceeeeecccccccC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
+|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.|.
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~---------------- 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN---------------- 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------
Confidence 577 9999999999999999998632 111 123566666655555443
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999852 22221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~~~ 1036 (1415)
. +..+...|...+...+ .-.+|++++||++|. ||..||+.|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2233333433332211 124799999999996 788888888876653
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCc-ceeehhhhc
Q 000570 1037 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALL 1097 (1415)
Q Consensus 1037 ~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~-i~~~Ir~ll 1097 (1415)
+. .....+|++.|..+++.++.|+++.++|++|+|+.||.|++++..+. ...+|..|+
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~ 251 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLL 251 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEE
Confidence 31 13456899999999999999999999999999999999998876442 224455554
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=273.69 Aligned_cols=257 Identities=28% Similarity=0.396 Sum_probs=193.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----------------cccccccCceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+-+||||||||||..+|+.. +.....++|||+... .+.+++- .+++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeTa--------------~RhY 119 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYETA--------------KRHY 119 (449)
T ss_pred cccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeecc--------------cccc
Confidence 4899999999999999999731 123345788886643 3333321 2468
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHH
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
-.+|+|||.+|..++..|..+.|++||||.+.+|.+|||+|||.+++..++ .+||+|||.|++. .+...+.+
T Consensus 120 aH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~leLV- 192 (449)
T KOG0460|consen 120 AHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLELV- 192 (449)
T ss_pred ccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHHHH-
Confidence 899999999999999999999999999999999999999999999999998 4788999999984 23322222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC---C----CC---hhhHHHHHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---G----EG---IPDLLLLLVQWTQKTMV 1039 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t---G----eG---I~dLl~~L~~l~~~~l~ 1039 (1415)
-.+++..|.++||+ |.++|||..||+. | .| |..||+.+-.+++.+
T Consensus 193 -------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P-- 247 (449)
T KOG0460|consen 193 -------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP-- 247 (449)
T ss_pred -------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc--
Confidence 13567788888987 5678999999875 3 22 233333333322211
Q ss_pred HhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc
Q 000570 1040 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1119 (1415)
Q Consensus 1040 e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a 1119 (1415)
......||.+.|..+|.+.|+|||++++|.+|+|+.|+.+-+.|.+..+.+. |.++.++++.+..
T Consensus 248 -~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lktt--------------vtgiemF~K~ld~ 312 (449)
T KOG0460|consen 248 -ERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTT--------------VTGIEMFRKSLDE 312 (449)
T ss_pred -ccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeE--------------eehHHHHHHHHHh
Confidence 1234667999999999999999999999999999999999888866433332 4566777777776
Q ss_pred cc---ceeeeccccccccCCCceEEeCCCc
Q 000570 1120 AQ---GIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1120 a~---gv~i~~~gL~~~~aG~~~~v~~~e~ 1146 (1415)
|+ .+.+.++|+......++|+++.|..
T Consensus 313 a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 313 AQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred cccccceehhhhcCCHHHHhcccEEecCCc
Confidence 65 2677778888777778888887764
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=266.58 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=186.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----------------cccccccCceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+.+||+|||||||.-+|+.. +.....++|||+......+.+. .+++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rhy 77 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRHY 77 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------CceE
Confidence 3899999999999999999731 1223346788776654444333 3569
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHHH
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
.++|+|||.+|..++..|+.+.|++||||+|.+|.+|||++|+.+.+..++| +||++||+|++. +.+....+
T Consensus 78 ahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellelV- 150 (394)
T COG0050 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLELV- 150 (394)
T ss_pred EeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999996 567999999984 22222211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC-CCChhhHHHHHHHHHHHHHHHh-----hh
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS-GEGIPDLLLLLVQWTQKTMVEK-----LT 1043 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t-GeGI~dLl~~L~~l~~~~l~e~-----l~ 1043 (1415)
-.+++..|..+||. |..+||+..||+. .+|-......|..++.. +... ..
T Consensus 151 -------------emEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~a-vd~yip~Per~ 206 (394)
T COG0050 151 -------------EMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDA-VDSYIPTPERD 206 (394)
T ss_pred -------------HHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHH-HHhcCCCCCCc
Confidence 23577788888875 4578999999975 34443333333332211 1111 12
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc---c
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---A 1120 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a---a 1120 (1415)
...||.+.|.+++.+.|+||+++++|.+|+|++|+.+.+.|..... ...+.++.+..+.... +
T Consensus 207 ~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~--------------kttvtgvemfrk~ld~~~AG 272 (394)
T COG0050 207 IDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQ--------------KTTVTGVEMFRKLLDEGQAG 272 (394)
T ss_pred ccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccc--------------eeEEEhHHHHHHHHhccccC
Confidence 3567999999999999999999999999999999999888754211 1223444444444433 3
Q ss_pred cceeeeccccccccCCCceEEeCCC
Q 000570 1121 QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
.++.+.++|..+-..-++++++.|.
T Consensus 273 dnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 273 DNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred CCcceEEEeccccceecceEeecCC
Confidence 4577777777766666667666664
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=276.34 Aligned_cols=248 Identities=29% Similarity=0.427 Sum_probs=197.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+|+.+||+|||||||+..|.+... .....+|||.++|.++++.... .+.|||+|||++|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHHH
Confidence 689999999999999999987643 3344689999999999887642 489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..|+...|+|||||++++|+++||.|||..|..++++- |||+||+|++.. + +..+.
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHHH
Confidence 9999999999999999999999999999999999999876 999999999731 0 11222
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcc
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1062 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~G 1062 (1415)
+..|+..+. | ...++|++|+.+|+||.+|.+.|..+.. ........+|+..|..+|.+.|.|
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEecccc
Confidence 333333332 1 3468999999999999999999988764 123356788999999999999999
Q ss_pred eEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc---cccceeeeccccccccCCCce
Q 000570 1063 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1063 tvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~---aa~gv~i~~~gL~~~~aG~~~ 1139 (1415)
||++|.+.+|++++||.+++.|.+ ++++|++++.|...+. |++.|.++++|.+.-..-+++
T Consensus 187 TVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~ 250 (447)
T COG3276 187 TVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGD 250 (447)
T ss_pred EEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhccc
Confidence 999999999999999999987654 4567788877766544 444466666666444445566
Q ss_pred EEeCCC
Q 000570 1140 YVVGPD 1145 (1415)
Q Consensus 1140 ~v~~~e 1145 (1415)
++++++
T Consensus 251 ~L~~~~ 256 (447)
T COG3276 251 WLLKPE 256 (447)
T ss_pred EeccCC
Confidence 655544
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=275.16 Aligned_cols=259 Identities=25% Similarity=0.287 Sum_probs=192.0
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccc----------------cccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE----------------GEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~----------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
..+|| |+|+.|||||||||++.|+.++-.- ...+|||+=.-.+.+ .
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav----------------~ 64 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV----------------N 64 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee----------------e
Confidence 46888 9999999999999999998643211 113455543333333 3
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
|+...|+|+|||||.+|...+.|.++..|.+||||||.+|.+|||+..+.-+...+++.||||||||++. +..
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-------Arp 137 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD-------ARP 137 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-------CCH
Confidence 5556799999999999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~ 1034 (1415)
...+..+.+.|.+.|-+.+ .-.+|+|..||+.|. ++..|++.|+.+.
T Consensus 138 ---------------~~Vvd~vfDLf~~L~A~de--------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 ---------------DEVVDEVFDLFVELGATDE--------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---------------HHHHHHHHHHHHHhCCChh--------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 2335566777777765533 235899999999884 4556666666655
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcc-eeehhhhcCCCCCccceeeeeeee
Q 000570 1035 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1113 (1415)
Q Consensus 1035 ~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i-~~~Ir~ll~p~p~~e~rvk~~~~~ 1113 (1415)
+.+. .+...||++.|....|...+|....++|.+|++++|+.+.+....|.+ ..+|..||....++...+.
T Consensus 195 p~P~---~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~----- 266 (603)
T COG1217 195 PAPK---GDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIE----- 266 (603)
T ss_pred CCCC---CCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecc-----
Confidence 5432 345678999998888999999999999999999999999888765543 2345555544333322111
Q ss_pred hhhhccccceeeeccccccccCCCce
Q 000570 1114 HKQIKAAQGIKITAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1114 ~keV~aa~gv~i~~~gL~~~~aG~~~ 1139 (1415)
.+..|..|++.||+....|+.+
T Consensus 267 ----eA~AGDIVaiaG~~~~~igdTi 288 (603)
T COG1217 267 ----EAEAGDIVAIAGLEDINIGDTI 288 (603)
T ss_pred ----cccccCEEEEcCcccccccccc
Confidence 1335667777788777666544
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=287.50 Aligned_cols=258 Identities=27% Similarity=0.394 Sum_probs=181.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeEeeceeEecccccce
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t--~v~-----------------------------~geagGITq~iga~~~~~~~i~~ 874 (1415)
.+|+|+||+|||||||+++|++. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 34999999999999999999852 111 0123567777666655443
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC---CChhHHHHHHHHHhcCC-ceEEEEEec
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 950 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G---v~~QT~E~l~llk~~~v-P~IVaINKi 950 (1415)
...|+|||||||..|...+.+++..+|++|||||+.+| +.+||.+++.+++..++ |+|||+||+
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 24599999999999999999999999999999999999 88999999988887775 689999999
Q ss_pred ccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 951 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 951 D~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
|++. |.. ..+......+...+...|+.. ..+++||+||++|.||.++...+
T Consensus 152 Dl~~-~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSVN-YDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hccC-ccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 9962 311 111222233444454455431 34799999999999998755433
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCC
Q 000570 1031 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1102 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~ 1102 (1415)
.++....|.+.|. ...||++.|.+++.+.|.|++++|+|.+|+|++||.|++++.+ .
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~------------- 267 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--V------------- 267 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--c-------------
Confidence 2222222333222 2357999999999999999999999999999999999986543 1
Q ss_pred ccceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1103 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1103 ~e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
...|+++++++..+..| ..+.|.+.+++......+++++.+
T Consensus 268 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 268 -SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred -EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 23566666666655543 336666666655444455555543
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=274.09 Aligned_cols=215 Identities=29% Similarity=0.370 Sum_probs=173.7
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeceeEecccccceeeeeccccc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~---------------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
...++|| ++|+.|.|||||||.++|+... ....+.+|||+...+..+.+....
T Consensus 5 ~~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~---------- 72 (603)
T COG0481 5 PQKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD---------- 72 (603)
T ss_pred chhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC----------
Confidence 3467899 9999999999999999998421 123346899988776666554211
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
-....|+|||||||.+|+-.++|.+..|.++||||||..|++.||+...-++...++-+|.||||||++ +++
T Consensus 73 -g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Ad 144 (603)
T COG0481 73 -GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AAD 144 (603)
T ss_pred -CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCC
Confidence 122459999999999999999999999999999999999999999999999999999999999999995 455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
...... + +..+ .|+.. -..+.+||+||.||+++|+.|+..++++ .-.
T Consensus 145 pervk~--------e----Ie~~------iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P---~g~ 191 (603)
T COG0481 145 PERVKQ--------E----IEDI------IGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPP---KGD 191 (603)
T ss_pred HHHHHH--------H----HHHH------hCCCc------------chheeEecccCCCHHHHHHHHHhhCCCC---CCC
Confidence 422211 1 1111 24432 2578999999999999999999877654 245
Q ss_pred cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.+.|+++.|++++++.-+|.++.++|.+|+|+.||.|.+++++
T Consensus 192 ~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg 234 (603)
T COG0481 192 PDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTG 234 (603)
T ss_pred CCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecC
Confidence 6788999999999999999999999999999999999988775
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=292.53 Aligned_cols=215 Identities=25% Similarity=0.269 Sum_probs=164.2
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~--v~~--------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
.++|+ |+|+||+|||||||+++|++.. +.. ....|||.....+.+.+
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~--------------- 65 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW--------------- 65 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec---------------
Confidence 35787 9999999999999999999632 211 12345555555444443
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
....|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 66 -~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 66 -NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred -CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 33469999999999999999999999999999999999999999999999999999999999999985 2333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC----------ChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe----------GI~dLl~~L~~l~ 1034 (1415)
...+ ..+...|...++.. ....+||+++||++|. ||..||+.|+.++
T Consensus 138 ~~vl---------------~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVV---------------DQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHH---------------HHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 3222 22333332222211 1234799999999998 4777777777665
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1035 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1035 ~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
+.+. .....||++.|..+++.++.|+++.++|++|+|+.||.|++++..
T Consensus 195 P~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~ 243 (607)
T PRK10218 195 PAPD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSE 243 (607)
T ss_pred CCCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCC
Confidence 4331 134567999999999999999999999999999999999887653
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=274.80 Aligned_cols=254 Identities=23% Similarity=0.313 Sum_probs=164.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc--c-------------cc------------------ccCceeEeeceeEecccccc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV--Q-------------EG------------------EAGGITQQIGATYFPAENIR 873 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v--~-------------~g------------------eagGITq~iga~~~~~~~i~ 873 (1415)
.|+|+||+|||||||+++|++..- . .+ ..+|||.+++..++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~---- 77 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST---- 77 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc----
Confidence 489999999999999999974321 0 01 1244555554444433
Q ss_pred eeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccc
Q 000570 874 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 952 (1415)
Q Consensus 874 ~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~ 952 (1415)
....++|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++| +|||+||||+
T Consensus 78 ------------~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 ------------DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred ------------CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 334699999999999999999999999999999999999999999999999998875 8889999999
Q ss_pred ccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 953 ~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+. |. .. . |......+...+...++ ..+++||+||++|.||..+...+.|
T Consensus 146 ~~-~~----~~---~-----------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YD----EE---V-----------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-ch----HH---H-----------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 62 21 00 0 11111122222333332 2468999999999999864322211
Q ss_pred HHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCcc
Q 000570 1033 WTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKE 1104 (1415)
Q Consensus 1033 l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e 1104 (1415)
+-.+.|.+.| ....+|++.|..++.....+.-+.|.|.+|+|++||.|++++.+ . .
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~ 258 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--R--------------S 258 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--c--------------E
Confidence 1111122211 12456888888876543323336799999999999999987642 2 2
Q ss_pred ceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCCC
Q 000570 1105 LRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1105 ~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
.+|+++++++..+..+ ..+.+.+.+. .....+.+++.+.
T Consensus 259 ~~VksI~~~~~~~~~a~~G~~v~l~l~~~--~~i~rG~vl~~~~ 300 (406)
T TIGR02034 259 SRVARIVTFDGDLEQARAGQAVTLTLDDE--IDISRGDLLAAAD 300 (406)
T ss_pred EEEEEEEECCcccCEeCCCCEEEEEECCc--cccCCccEEEcCC
Confidence 4556666666555443 2344554432 2223444555443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=273.74 Aligned_cols=225 Identities=24% Similarity=0.291 Sum_probs=162.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc---ccccCceeEeeceeEecccccce------eee-ec-cc--ccccCCCCEE
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRE------RTR-EL-KA--NATLKVPGLL 891 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~~~i~~------~t~-~v-~~--~~~~~~~~l~ 891 (1415)
..+|+|+||+|||||||+++|.+.... ....+|+|..++..++.+..... .+. .+ .. ........++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 345999999999999999999764321 23357899998876654321000 000 00 00 0001235699
Q ss_pred EEeCCCCcchhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHH
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
|||||||+.|...+.++++.+|++|||||+.+|+ ++||.+++.++..+++ |+|||+||+|++.. ..
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-------~~----- 151 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-------EK----- 151 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-------HH-----
Confidence 9999999999999999999999999999999998 9999999999988886 69999999999620 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1049 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~ 1049 (1415)
. ...+..+...+... +...+++||+||++|.||..|+++|..+++.. ......+++
T Consensus 152 -----~----~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 152 -----A----LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred -----H----HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 0 01112222222211 11347999999999999999999988654321 122356799
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEecc
Q 000570 1050 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1085 (1415)
Q Consensus 1050 ~~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~ 1085 (1415)
+.|.+++.+.| +|+++.|.|.+|+|++||.|.+++.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccC
Confidence 99999998776 5679999999999999999998764
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=283.75 Aligned_cols=213 Identities=28% Similarity=0.347 Sum_probs=163.1
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCc--cc-------------ccccCceeEeeceeEecccccceeeeeccccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQ-------------EGEAGGITQQIGATYFPAENIRERTRELKANATL 885 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~--v~-------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~ 885 (1415)
.++|| |+|+||+|||||||+++|++.. +. ....+|||.....+.+.|... ..
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-----------dg 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-----------DG 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-----------CC
Confidence 46888 9999999999999999998632 11 112456666655554444210 01
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
....|+|||||||.+|...+.++++.||++|||||+.+|++.||..+|.++...++|+|+|+||+|+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123599999999999999999999999999999999999999999999998888999999999999852 1111
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1045 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~ 1045 (1415)
..+ ..+... .++. ...+|++||++|.||.+|+.+|...++.+. -...
T Consensus 145 ~v~---------------~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~---~~~~ 191 (600)
T PRK05433 145 RVK---------------QEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK---GDPD 191 (600)
T ss_pred HHH---------------HHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCcccc---CCCC
Confidence 110 111111 1221 125899999999999999999987765432 2345
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++++.|++++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 67999999999999999999999999999999999887754
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=273.71 Aligned_cols=255 Identities=23% Similarity=0.295 Sum_probs=165.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc--c-------------cc------------------ccCceeEeeceeEeccccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV--Q-------------EG------------------EAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v--~-------------~g------------------eagGITq~iga~~~~~~~i 872 (1415)
+.|+|+||+|+|||||+++|++..- . .| ..+|||.+++..++.+
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~--- 104 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST--- 104 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc---
Confidence 4599999999999999999985421 1 01 1244555554444433
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecc
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 951 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD 951 (1415)
....++|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||
T Consensus 105 -------------~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 -------------EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred -------------CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 33569999999999999999999999999999999999999999999999998886 6889999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
++. |.. . .+......+...+...++ ...+++||+||++|.||..+...+-
T Consensus 172 ~~~-~~~----~--------------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~ 221 (474)
T PRK05124 172 LVD-YSE----E--------------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMP 221 (474)
T ss_pred ccc-chh----H--------------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCccccccccc
Confidence 962 211 0 011111122222222221 1247999999999999987643322
Q ss_pred HHHHHHHHHhh--------hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCc
Q 000570 1032 QWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMK 1103 (1415)
Q Consensus 1032 ~l~~~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~ 1103 (1415)
++....|.+.| ....++++.|..++........+.|+|.+|+|++||.|++++++ .
T Consensus 222 wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~-------------- 285 (474)
T PRK05124 222 WYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG--K-------------- 285 (474)
T ss_pred ccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC--c--------------
Confidence 21111222211 12356889888876432222225689999999999999987643 1
Q ss_pred cceeeeeeeehhhhccc---cceeeeccccccccCCCceEEeCC
Q 000570 1104 ELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1104 e~rvk~~~~~~keV~aa---~gv~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
..+|+++++|+..+..+ +.+.|.+.+. .....+.+++.+
T Consensus 286 ~~~VksI~~~~~~v~~A~aG~~V~l~L~~~--~~i~rG~VL~~~ 327 (474)
T PRK05124 286 ESNVARIVTFDGDLEEAFAGEAITLVLEDE--IDISRGDLLVAA 327 (474)
T ss_pred eEEEEEEEEcCccccCcCCCCEEEEEeCCc--cccCCccEEECC
Confidence 24566666666655433 3355554432 223344455444
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=281.21 Aligned_cols=212 Identities=26% Similarity=0.325 Sum_probs=160.8
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccc---------------ccccCceeEeeceeEecccccceeeeecccccccC
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---------------EGEAGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~---------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
++|| |+|+||+|||||||+++|++.... ....+|||.......+.|... ...
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~-----------~g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAK-----------DGE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcC-----------CCC
Confidence 4787 999999999999999999864211 012346666655444443210 001
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...|+|||||||.+|..++.+++..||++|||||+.+|++.||..+|..+...++|+|+|+||+|+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999888888999999999999852 11110
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1046 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~ 1046 (1415)
.+ ..+... .++. ...++++||++|.||.+|+.+|...++.+. -....
T Consensus 142 ~~---------------~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~---~~~~~ 188 (595)
T TIGR01393 142 VK---------------KEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPK---GDPDA 188 (595)
T ss_pred HH---------------HHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCC---CCCCC
Confidence 00 111111 1221 125899999999999999999987664331 13456
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
|+++.|+.++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 7999999999999999999999999999999999887653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=254.35 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=168.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeEeeceeEecccccce
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v---------------------------------~~geagGITq~iga~~~~~~~i~~ 874 (1415)
++.+|+||.|||||+.+|++..- +..+..|||+++...+|.+..
T Consensus 9 fiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K--- 85 (431)
T COG2895 9 FITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK--- 85 (431)
T ss_pred EEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc---
Confidence 79999999999999999985321 112246899999888877653
Q ss_pred eeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccc
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRL 953 (1415)
Q Consensus 875 ~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~ 953 (1415)
+.+.|.|||||+.|+.+|..|++-||++||+||+.+|+..||+.|.-++..+++ .+||++||||++
T Consensus 86 -------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLv 152 (431)
T COG2895 86 -------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLV 152 (431)
T ss_pred -------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeeccc
Confidence 459999999999999999999999999999999999999999999999999997 688999999998
Q ss_pred cCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 954 YGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 954 ~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+|++ ..|..............|+. .+.+||+||+.|+||..--..+-|+
T Consensus 153 -dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mpWY 201 (431)
T COG2895 153 -DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMPWY 201 (431)
T ss_pred -ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCCcc
Confidence 3432 23333334444445555543 3589999999999997665555555
Q ss_pred HHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCC
Q 000570 1034 TQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1099 (1415)
Q Consensus 1034 ~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p 1099 (1415)
..+.+++.|.. ..+|+++|..|..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 202 ~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 202 KGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred cCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 55666655432 345888888775322212335678999999999999998865 45566666554
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=278.22 Aligned_cols=283 Identities=25% Similarity=0.293 Sum_probs=195.1
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc--------cccc----------ccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQEG----------EAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~--------v~~g----------eagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|| |+|+||+|||||||+++|+... +..| ..+|||.+..++++.|..
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---------- 74 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---------- 74 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC----------
Confidence 467888 9999999999999999998432 1111 246777777777666552
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
...|+|||||||.+|+..+.|+++.+|+||+|||+..|+++||...|+++..+++|.|+|+||||++.
T Consensus 75 -----~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~------- 142 (697)
T COG0480 75 -----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG------- 142 (697)
T ss_pred -----ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc-------
Confidence 14599999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhHHHHHHhhhHHHH-----------------------------------------------------HHHHHHHHHHHH
Q 000570 962 APIVKAIKQQNTDVQ-----------------------------------------------------NEFNMRLVQIVT 988 (1415)
Q Consensus 962 a~~~~~l~~q~~~v~-----------------------------------------------------~ef~~~l~~I~~ 988 (1415)
++|...+......+. ..|-..+.....
T Consensus 143 a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de 222 (697)
T COG0480 143 ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDE 222 (697)
T ss_pred cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCH
Confidence 444444433221111 111111111111
Q ss_pred HHHHcCCchhhhhcccC---------------CCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh------------
Q 000570 989 QLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK------------ 1041 (1415)
Q Consensus 989 ~L~e~gl~~e~~~~~~~---------------~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~------------ 1041 (1415)
.|.+ .|..+.. -+..+|+++.||..+-|+..||+.++.+++.++...
T Consensus 223 ~l~e------~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~ 296 (697)
T COG0480 223 ELME------KYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEK 296 (697)
T ss_pred HHHH------HHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccc
Confidence 1111 1111111 134789999999999999999999999987653321
Q ss_pred -----hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhh
Q 000570 1042 -----LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116 (1415)
Q Consensus 1042 -----l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~ke 1116 (1415)
.....++.+.|+.+...+..|....++|++|+|+.|+.|+..+.. ...+|-.|+.++... .....+
T Consensus 297 ~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~-------~~~v~~ 367 (697)
T COG0480 297 AVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNE-------REEVDE 367 (697)
T ss_pred hhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCc-------eeeccc
Confidence 112456888999988888889988899999999999987765432 122333333222111 112222
Q ss_pred hccccceeeeccccccccCCCceEEeC
Q 000570 1117 IKAAQGIKITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1117 V~aa~gv~i~~~gL~~~~aG~~~~v~~ 1143 (1415)
+. .|-.+++.||..+..|+.+....
T Consensus 368 ~~--AG~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 368 VP--AGDIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred cc--CccEEEEEcccccccCCeeecCC
Confidence 22 34566677888877777766444
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=267.27 Aligned_cols=255 Identities=23% Similarity=0.256 Sum_probs=172.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccc-------eeeee-ccc-cc-ccCCCCEEE
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR-------ERTRE-LKA-NA-TLKVPGLLV 892 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~-------~~t~~-v~~-~~-~~~~~~l~i 892 (1415)
.+|+|+||+|||||||+++|.+... .....+|+|.+++...+.+.... -.+.. +.. .. ......|+|
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 4599999999999999999976422 12335889999887655542100 00000 000 00 001246999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
||||||..|...+.+++..+|++|||||+.+|+ .++|.+++.++...++ |+|||+||+|++.. ...
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~------~~~------ 157 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK------ERA------ 157 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc------hhH------
Confidence 999999999999999999999999999999998 8999999999988886 69999999999621 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccce
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1050 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~ 1050 (1415)
...+..+...+... +...+++|++||++|.||+.|+..|..+++.. ......++++
T Consensus 158 ---------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~---~~~~~~~~r~ 213 (411)
T PRK04000 158 ---------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTP---ERDLDKPPRM 213 (411)
T ss_pred ---------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC---CCCCCCCceE
Confidence 00111222222111 11347999999999999999999887654321 1123567899
Q ss_pred EEEEEEEEcC--------cceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1051 TVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1051 ~VlEvk~~~G--------~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
.|.++|.+.| .|+++.|+|.+|+|++||.|.+++........+..+ .|. ..+|+++.+++..+..+
T Consensus 214 ~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~---~~~-~~~VksI~~~~~~~~~a 287 (411)
T PRK04000 214 YVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKW---EPI-TTKIVSLRAGGEKVEEA 287 (411)
T ss_pred EEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccc---ccc-eEEEeEEEECCEECCEE
Confidence 9999998876 456999999999999999999876431000000000 011 24677777777665544
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=261.64 Aligned_cols=226 Identities=26% Similarity=0.442 Sum_probs=173.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCceeEeeceeEeccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-------------------------------v~~geagGITq~iga~~~~~~~i 872 (1415)
-...++|+||||+|||||+++|++.- ....+.+|||.+++.+.|....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~- 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS- 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc-
Confidence 33458999999999999999998410 1122357888888877776332
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceE
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 944 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 944 (1415)
..++|||+|||.+|+..+..|++.+|++|||||++.| ...||++|..+|+.+|+ .+|
T Consensus 255 ---------------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 255 ---------------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred ---------------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 3599999999999999999999999999999999875 35799999999999997 899
Q ss_pred EEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCCh
Q 000570 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023 (1415)
Q Consensus 945 VaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 1023 (1415)
|+|||||++ +|.+. +|.+....+...| ...||.. ..+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~e----------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFKE----------SSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCccc----------CCcceEecccccCCcc
Confidence 999999998 68653 4444455555666 5566652 4678999999999998
Q ss_pred hhH--HHHHHHHHH-HHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceee
Q 000570 1024 PDL--LLLLVQWTQ-KTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1092 (1415)
Q Consensus 1024 ~dL--l~~L~~l~~-~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~ 1092 (1415)
-.. -..+.+|+. ++|+..+. +..||+++|++++...+.|.+++|.|.+|.|..|+.|+++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 644 123444443 44444442 3457999999999999999999999999999999999987643 2334
Q ss_pred hhhh
Q 000570 1093 IRAL 1096 (1415)
Q Consensus 1093 Ir~l 1096 (1415)
|+.|
T Consensus 449 vk~l 452 (603)
T KOG0458|consen 449 VKGL 452 (603)
T ss_pred EEee
Confidence 4444
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=243.81 Aligned_cols=164 Identities=39% Similarity=0.552 Sum_probs=125.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~------------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+|+|+||+|||||||+++|++..... ...+|+|..++...+.. .+...
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~~ 70 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENNR 70 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESSE
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------ccccc
Confidence 49999999999999999998543221 12356666666555540 12335
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.++|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++..+++|+|||+||||++.
T Consensus 71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-------------- 136 (188)
T PF00009_consen 71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-------------- 136 (188)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH--------------
T ss_pred ceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh--------------
Confidence 699999999999999999999999999999999999999999999999999999999999999961
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+...+..+...| ...++.. ...+|+||+||++|.||..|++.|..+++
T Consensus 137 --------~~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 --------KELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred --------hhHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 12222333344233 3333221 03689999999999999999999987764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=248.18 Aligned_cols=281 Identities=22% Similarity=0.322 Sum_probs=194.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccceeeeeccccc--------
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANA-------- 883 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~~t~~v~~~~-------- 883 (1415)
.+|+++||||||||||+.+|......+|. .+|.|.++....+-+..-+- ..+....
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~--~rlknPld~aE~~~v 195 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKV--VRLKNPLDEAEKAAV 195 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCce--EeecCcccHHHHhHh
Confidence 45899999999999999999865554443 24555554433332222110 0111100
Q ss_pred -ccCCCCEEEEeCCCCcchhhHHhhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 884 -TLKVPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 884 -~~~~~~l~iIDTPGHe~F~~lr~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
.-...-+.|+||-||+.|...+.||+ ...|+.+|||.|++|++-.|.|||.++....+|+|||+||+|+.+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~------ 269 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP------ 269 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc------
Confidence 11123589999999999998888886 458999999999999999999999999999999999999999973
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc---------ccCC-CcceeEEeCCCCCCCChhhHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK---------NKDR-GETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~---------~~~~-g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
...|...+. .|...|...+-.+-..-+ .... ...+|||.+|+.||+|++- |..+
T Consensus 270 ddr~~~v~~---------------ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~ 333 (527)
T COG5258 270 DDRFQGVVE---------------EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEF 333 (527)
T ss_pred HHHHHHHHH---------------HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHH
Confidence 333333222 222222221110000000 0012 2479999999999999954 4444
Q ss_pred HHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeee
Q 000570 1031 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1110 (1415)
Q Consensus 1031 ~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~ 1110 (1415)
+.+++..- ......+|.+.|.++|.+.|.|+++.+.|.+|+|+.||++.+++.. .+.+++..|+++
T Consensus 334 f~~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSI 399 (527)
T COG5258 334 FLLLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSI 399 (527)
T ss_pred HHhCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEE
Confidence 44454332 3456778999999999999999999999999999999999986533 345678889999
Q ss_pred eeehhhhccccc---eeeeccccccccCCCceEEeCC
Q 000570 1111 YLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGP 1144 (1415)
Q Consensus 1111 ~~~~keV~aa~g---v~i~~~gL~~~~aG~~~~v~~~ 1144 (1415)
.+||-.|.+|.. +.|++.|.+.-....+|+++..
T Consensus 400 emh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 999988877653 5667777766555566666553
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=272.72 Aligned_cols=240 Identities=23% Similarity=0.244 Sum_probs=168.2
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcc---ccc---------------ccCceeEeeceeEecccccceeeeecc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEG---------------EAGGITQQIGATYFPAENIRERTRELK 880 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v---~~g---------------eagGITq~iga~~~~~~~i~~~t~~v~ 880 (1415)
+..++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+...+.+.|
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~----------- 72 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----------- 72 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----------
Confidence 4567888 99999999999999999984211 000 2355666655555443
Q ss_pred cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 881 ~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
....|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 73 -----~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 73 -----KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred -----CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 335699999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ChhHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDV-------------------------------------------------QNEFNMRLVQIVTQLK 991 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v-------------------------------------------------~~ef~~~l~~I~~~L~ 991 (1415)
+++...+......+ ..........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 22322222211100 0000011111111111
Q ss_pred HcCC-chhhhhcc---------------cCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh--------------
Q 000570 992 EQGM-NTELYYKN---------------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-------------- 1041 (1415)
Q Consensus 992 e~gl-~~e~~~~~---------------~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~-------------- 1041 (1415)
+..= -.+.|..+ ...+..+|++..||+++.||..||+.|+.+++.+....
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 1100 00011111 01246789999999999999999999999887654210
Q ss_pred ---hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1042 ---LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1042 ---l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
..+..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~ 345 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNS 345 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeC
Confidence 123456888999998888899999999999999999988643
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=271.94 Aligned_cols=270 Identities=20% Similarity=0.244 Sum_probs=164.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccc-----------ccCceeEeeceeEeccccc---ceeeeeccc---ccccCCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQQIGATYFPAENI---RERTRELKA---NATLKVPG 889 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~g-----------eagGITq~iga~~~~~~~i---~~~t~~v~~---~~~~~~~~ 889 (1415)
.|+|+||+|||||||+++|++..-... ...|.|.+.-.+.+..+.. +.+..++.. .+.+....
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~ 105 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRK 105 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCce
Confidence 389999999999999999986421100 0122221111111111111 111111111 12234457
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~----- 175 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E----- 175 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H-----
Confidence 9999999999999888899999999999999999999999999999998886 6888999999962 211 0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhh------
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------ 1042 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l------ 1042 (1415)
.+......+...+...++ ..+++||+||++|.||.++...+-++..+.|.+.|
T Consensus 176 ---------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~~ 234 (632)
T PRK05506 176 ---------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEIA 234 (632)
T ss_pred ---------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCCC
Confidence 111112222233333343 24689999999999998543221111111222211
Q ss_pred --hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1043 --TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1043 --~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
....+|++.|..++.....+..+.|.|.+|+|++||.|++++++ . ..+|+++++|+..+..+
T Consensus 235 ~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~~~VksI~~~~~~~~~a 298 (632)
T PRK05506 235 SDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--K--------------TSRVKRIVTPDGDLDEA 298 (632)
T ss_pred CCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--c--------------eEEEEEEEECCceeCEE
Confidence 12456888888876532112226799999999999999987643 2 24556666666555433
Q ss_pred ---cceeeeccccccccCCCceEEeCCC
Q 000570 1121 ---QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1121 ---~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
..+.|.+.+. .....+++++.++
T Consensus 299 ~aG~~v~i~l~~~--~~i~rG~vL~~~~ 324 (632)
T PRK05506 299 FAGQAVTLTLADE--IDISRGDMLARAD 324 (632)
T ss_pred cCCCeEEEEecCc--cccCCccEEecCC
Confidence 3355555432 2234455555554
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=268.78 Aligned_cols=241 Identities=23% Similarity=0.238 Sum_probs=169.3
Q ss_pred ccccccCCCceeEEeCCCCCHHHHHHHHHcCcc--------ccc----------ccCceeEeeceeEecccccceeeeec
Q 000570 818 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------QEG----------EAGGITQQIGATYFPAENIRERTREL 879 (1415)
Q Consensus 818 ~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v--------~~g----------eagGITq~iga~~~~~~~i~~~t~~v 879 (1415)
.+..++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+.....+.|.
T Consensus 5 ~~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------- 73 (689)
T TIGR00484 5 TDLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------- 73 (689)
T ss_pred CccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC---------
Confidence 34567898 99999999999999999974211 111 13566666555555443
Q ss_pred ccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccC
Q 000570 880 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTC 959 (1415)
Q Consensus 880 ~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~ 959 (1415)
...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 74 -------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~----- 141 (689)
T TIGR00484 74 -------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG----- 141 (689)
T ss_pred -------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC-----
Confidence 34699999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CChhHHHHHHhhhHHHH--------------------------------------------HHHH----HHHHHHHHH--
Q 000570 960 RNAPIVKAIKQQNTDVQ--------------------------------------------NEFN----MRLVQIVTQ-- 989 (1415)
Q Consensus 960 ~~a~~~~~l~~q~~~v~--------------------------------------------~ef~----~~l~~I~~~-- 989 (1415)
+++...+......+. .++. .....++..
T Consensus 142 --~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 219 (689)
T TIGR00484 142 --ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA 219 (689)
T ss_pred --CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 223222222111000 0011 111111111
Q ss_pred -----HHHc-----CCchhhhhc----ccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---------------
Q 000570 990 -----LKEQ-----GMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------- 1040 (1415)
Q Consensus 990 -----L~e~-----gl~~e~~~~----~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------- 1040 (1415)
|.+. .+..+.++. ....+..+|++..||++|.||..||+.|+.+++.+...
T Consensus 220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 299 (689)
T TIGR00484 220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIE 299 (689)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceee
Confidence 1111 011111110 01125678999999999999999999999988765321
Q ss_pred -hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1041 -KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1041 -~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
...+..++.+.|+.+...+..|.+..++|++|+|+.||.|...
T Consensus 300 ~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 343 (689)
T TIGR00484 300 RKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNS 343 (689)
T ss_pred ecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeC
Confidence 0122446888999999999999999999999999999998743
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=268.89 Aligned_cols=239 Identities=23% Similarity=0.259 Sum_probs=166.7
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc-c-------cc----------cccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-V-------QE----------GEAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~-v-------~~----------geagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|+ |+|+||+|||||||+++|++.. . .. ...+|||.++...++.|.
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------- 71 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 71 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-----------
Confidence 346777 9999999999999999997521 1 10 024566666665555443
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
...|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 72 -----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 72 -----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred -----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 34699999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHHH
Q 000570 962 APIVKAIKQQNTDV-------------------------------------------------QNEFNMRLVQIVTQLKE 992 (1415)
Q Consensus 962 a~~~~~l~~q~~~v-------------------------------------------------~~ef~~~l~~I~~~L~e 992 (1415)
+++...+......+ ..........++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 22222221111100 00000001111111111
Q ss_pred cCC-chhhhhccc---------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh---------------
Q 000570 993 QGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1041 (1415)
Q Consensus 993 ~gl-~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~--------------- 1041 (1415)
..= -.+.|..+. ..+..+|++..||.+|.||..||+.|+.+++.+....
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 000 000011110 1145689999999999999999999999887654210
Q ss_pred -hhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1042 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1042 -l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
..+..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 342 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNT 342 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeC
Confidence 123456888999998888899999999999999999988644
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=268.09 Aligned_cols=243 Identities=25% Similarity=0.288 Sum_probs=169.8
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcccc---c---------------ccCceeEeeceeEecccccceeeeecc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE---G---------------EAGGITQQIGATYFPAENIRERTRELK 880 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~---g---------------eagGITq~iga~~~~~~~i~~~t~~v~ 880 (1415)
+..++|+ |+|+||+|||||||+++|+...-.. + ..+|+|.......+.
T Consensus 4 ~~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~------------ 69 (687)
T PRK13351 4 PLMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD------------ 69 (687)
T ss_pred ccccccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE------------
Confidence 3456777 9999999999999999998532110 0 013333333333332
Q ss_pred cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCC
Q 000570 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 881 ~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
|....|+|||||||.+|..++.++++.+|++|||||+..|++.+|..+|.++...++|+|||+||+|+.
T Consensus 70 ----~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~------- 138 (687)
T PRK13351 70 ----WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV------- 138 (687)
T ss_pred ----ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------
Confidence 334569999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ChhHHHHHHhhhHHHH---------------------------------------------HHHH----HHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQ---------------------------------------------NEFN----MRLVQIVTQLK 991 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~---------------------------------------------~ef~----~~l~~I~~~L~ 991 (1415)
++++...+......+. ..+. .....++..+.
T Consensus 139 ~~~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 139 GADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444443211100 0111 11111112111
Q ss_pred HcCC-chhhhhccc---------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---------------
Q 000570 992 EQGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------- 1040 (1415)
Q Consensus 992 e~gl-~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------- 1040 (1415)
+..- -.+.|+.+. ..+..+|++++||++|.||..||+.|+.+++.+...
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 298 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKV 298 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceee
Confidence 1100 011112111 124578999999999999999999999998766421
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC
Q 000570 1041 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1041 ~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
...+..++.+.|+.+...++.|.++.++|++|+|+.||.|.+++..
T Consensus 299 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~ 344 (687)
T PRK13351 299 DPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG 344 (687)
T ss_pred cCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC
Confidence 0123456889999999999999999999999999999999876643
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=257.01 Aligned_cols=295 Identities=20% Similarity=0.261 Sum_probs=181.3
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE----eec-eeEecccccceeeeeccc---ccccCCCCEEE
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ----QIG-ATYFPAENIRERTRELKA---NATLKVPGLLV 892 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq----~ig-a~~~~~~~i~~~t~~v~~---~~~~~~~~l~i 892 (1415)
..+|+ |+|+||+|+|||||+++|+...-.....|.+.. ... ..+.+.+ +.+...+.. .+.|....|+|
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E--~~rgiSi~~~~~~~~~~~~~inl 83 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEME--KQRGISVTSSVMQFPYRDCLINL 83 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHH--HhhCCceeeeeEEEEECCEEEEE
Confidence 45777 999999999999999999853221111111110 000 0011111 112222211 23455567999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||.+|...+.++++.+|++|||||+..|+..||..+|.++...++|+|+|+||||+. ++++...+....
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~ 156 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIE 156 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 233333222211
Q ss_pred HHHH----------------------------------------------------HHH-H-HHHHHHHHHH---HHcCC
Q 000570 973 TDVQ----------------------------------------------------NEF-N-MRLVQIVTQL---KEQGM 995 (1415)
Q Consensus 973 ~~v~----------------------------------------------------~ef-~-~~l~~I~~~L---~e~gl 995 (1415)
..+. ..| . ..+..+...| ...+.
T Consensus 157 ~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~ 236 (526)
T PRK00741 157 EVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASN 236 (526)
T ss_pred HHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhccc
Confidence 1000 000 0 0000011111 00000
Q ss_pred chhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH-----hhhc-ccccceEEEEEEE---EcCcceEEE
Q 000570 996 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLTF-RNELQCTVLEVKV---IEGHGTTID 1066 (1415)
Q Consensus 996 ~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e-----~l~~-~~~~~~~VlEvk~---~~G~Gtvi~ 1066 (1415)
. .....-.-+..+||++.||++|.||..||+.|+.+++.+... .+.+ ..+|.+.|+.+.. .+.+|.+..
T Consensus 237 ~--~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlaf 314 (526)
T PRK00741 237 E--FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAF 314 (526)
T ss_pred c--hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEE
Confidence 0 000001125679999999999999999999999998765321 1112 3458888888873 357899999
Q ss_pred EEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeeccccccccCCCceE
Q 000570 1067 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1140 (1415)
Q Consensus 1067 ~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~~gL~~~~aG~~~~ 1140 (1415)
++|++|+|+.|+.|....+.. .-+|..++...... ...|. +.+|-.+.+.++.....|+.+.
T Consensus 315 vRV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~----------~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 315 VRVCSGKFEKGMKVRHVRTGK--DVRISNALTFMAQD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EEEeccEECCCCEEEeccCCc--eEEecceEEEecCC----------ceECceeCCCCEEEEECCCCCccCCCcc
Confidence 999999999999987554321 11222221111000 01122 2356667777887777787774
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=268.47 Aligned_cols=239 Identities=25% Similarity=0.292 Sum_probs=163.9
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc-ccc---------------cccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-VQE---------------GEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~-v~~---------------geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
..++|| |+|+||+|||||||+++|++.. +.. ...+|||.+.+...+.|..
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------ 82 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------ 82 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------
Confidence 467888 9999999999999999998532 110 1124455444444333310
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
......|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+.. ++
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~~ 155 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------KE 155 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------cc
Confidence 01134589999999999999999999999999999999999999999999999888999999999999862 22
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCcceeEEeCCCCCCCChh-----------------
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP----------------- 1024 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~--~~~~~~~g~~v~iVpvSA~tGeGI~----------------- 1024 (1415)
+...+ ..++..|...+..+...+..+. ...+ .|.. .. ..-.+++.||+.|+|+.
T Consensus 156 ~~~~~----~~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~-~~-~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~ 228 (731)
T PRK07560 156 LKLTP----QEMQQRLLKIIKDVNKLIKGMA-PEEFKEKWKV-DV-EDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDY 228 (731)
T ss_pred ccCCH----HHHHHHHHHHHHHHHHHHHHhh-hhhhhcceee-cC-CCCcEeeeecccccceeHHHHHHhCCCHHHHHHH
Confidence 22221 1223333333333222222111 1111 0110 00 11236788999998886
Q ss_pred -----------------hHHHHHHHHHHHHHHHh----------------------hhcccccceEEEEEEEEcCcceEE
Q 000570 1025 -----------------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTI 1065 (1415)
Q Consensus 1025 -----------------dLl~~L~~l~~~~l~e~----------------------l~~~~~~~~~VlEvk~~~G~Gtvi 1065 (1415)
.||+.|+.+++.+.... .+...++.+.|+.+...++.|+++
T Consensus 229 ~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va 308 (731)
T PRK07560 229 YEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVA 308 (731)
T ss_pred HhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEE
Confidence 67777777776554210 122346788899999999999999
Q ss_pred EEEEEeeEEccCCEEEEeccC
Q 000570 1066 DVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1066 ~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++|++|+|+.||.|.+++..
T Consensus 309 ~~RV~sGtL~~Gd~v~~~~~~ 329 (731)
T PRK07560 309 TGRVFSGTLRKGQEVYLVGAK 329 (731)
T ss_pred EEEEEEeEEcCCCEEEEcCCC
Confidence 999999999999999887654
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=246.48 Aligned_cols=232 Identities=27% Similarity=0.361 Sum_probs=169.3
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCc--------cc----------ccccCceeEeeceeEecccccceeeeeccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKA 881 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~--------v~----------~geagGITq~iga~~~~~~~i~~~t~~v~~ 881 (1415)
...+|+ |+|+.|.|+|||||.+++++.. |. ....+|||.+.++++++|..
T Consensus 36 ~~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------- 103 (721)
T KOG0465|consen 36 LNKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------- 103 (721)
T ss_pred hhhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------
Confidence 347888 9999999999999999998532 11 12347899999999998874
Q ss_pred ccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCC
Q 000570 882 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 961 (1415)
Q Consensus 882 ~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~ 961 (1415)
..|+|||||||.+|+-.+.|++++.|.||||+++..|++.||..+|++++.+++|.|.+|||||+.+
T Consensus 104 ------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG------- 170 (721)
T KOG0465|consen 104 ------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG------- 170 (721)
T ss_pred ------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcC-------
Confidence 3599999999999999999999999999999999999999999999999999999999999999974
Q ss_pred hhHHHHHHhhh------------------------------------------------HHH-------HHHHHHHHHHH
Q 000570 962 APIVKAIKQQN------------------------------------------------TDV-------QNEFNMRLVQI 986 (1415)
Q Consensus 962 a~~~~~l~~q~------------------------------------------------~~v-------~~ef~~~l~~I 986 (1415)
+++..+|.+.. .++ ++++-+.+..+
T Consensus 171 a~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 171 ASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred CChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333221 111 11221122222
Q ss_pred HHHHHHcCCchhhhhcccC---------------CCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH---hhh-----
Q 000570 987 VTQLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT----- 1043 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~---------------~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e---~l~----- 1043 (1415)
-..|.+ .|.++.. -+.++|+++.||+.+.||..||+.++.+++.+..- .+.
T Consensus 251 DE~l~e------~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~ 324 (721)
T KOG0465|consen 251 DETLAE------MFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNS 324 (721)
T ss_pred hHHHHH------HHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCC
Confidence 222222 2222222 25689999999999999999999999998754211 111
Q ss_pred ---------c-ccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEe
Q 000570 1044 ---------F-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1044 ---------~-~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
. .+||-+..+.+..-+ .|....+++++|+|+.||+|.-.
T Consensus 325 ~ekv~l~~~~d~~Pfv~LAFKle~g~-fGqLTyvRvYqG~L~kG~~iyN~ 373 (721)
T KOG0465|consen 325 KEKVTLSPSRDKDPFVALAFKLEEGR-FGQLTYVRVYQGTLSKGDTIYNV 373 (721)
T ss_pred ccceEeccCCCCCceeeeEEEeeecC-ccceEEEEEeeeeecCCcEEEec
Confidence 1 124555554443333 38899999999999999998644
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=230.68 Aligned_cols=241 Identities=25% Similarity=0.340 Sum_probs=176.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
.+|+|+||+|+|||||..+|.... -.....+|||-++|...+....-.. +... ..-+++|+|+|||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~---e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQG---EQLQFTLVDCPGH 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCcc---ccceeEEEeCCCc
Confidence 559999999999999999997421 2344568999999987665433210 1000 1125899999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+.......|+...|++|||||+..|.++||.|+|-+...+....||||||||.++. + |.. ..
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE-------~-------qr~---sk 143 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE-------N-------QRA---SK 143 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc-------h-------hhh---hH
Confidence 999999999999999999999999999999999998888888889999999998742 0 000 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCC----CChhhHHHHHHHHHHHHHHHhhhcccccceEEEE
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLE 1054 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG----eGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlE 1054 (1415)
+......+..-|...+ ++++.||+++||..| ++|++|...|... +.....++..||-+.|..
T Consensus 144 i~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~---if~P~Rd~~gpflm~vDH 209 (522)
T KOG0461|consen 144 IEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESR---IFEPKRDEEGPFLMAVDH 209 (522)
T ss_pred HHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHh---hcCCCcCCCCCeEEEeee
Confidence 1112223344444443 467899999999999 6676666655432 222344567788899999
Q ss_pred EEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc
Q 000570 1055 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1120 (1415)
Q Consensus 1055 vk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa 1120 (1415)
-+.++|.|||+++.|.+|.|+.|+.|-+...+ ..-+|++..+.+..|..+
T Consensus 210 CF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 210 CFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 99999999999999999999999998874221 112366666666666544
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=250.33 Aligned_cols=296 Identities=18% Similarity=0.229 Sum_probs=180.8
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEe--eceeEeccccc-ceeeeecc---cccccCCCCEEEEe
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENI-RERTRELK---ANATLKVPGLLVID 894 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~--iga~~~~~~~i-~~~t~~v~---~~~~~~~~~l~iID 894 (1415)
.++|+ |+|+||+|+|||||+++|+...-.....|.+.-. ...+...+... +.+...+. ..+.|....|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45677 9999999999999999997532111111111000 00011111110 11111111 12345556799999
Q ss_pred CCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 895 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 895 TPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
||||.+|...+.+++..+|++|||||+..|+..+|..+|.+++..++|+|||+||||+.. +++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~-------~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI-------RDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC-------CCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999852 2222222111000
Q ss_pred HHH---------------------------HH---------------------------HHHHHHHH---HHHHHc--CC
Q 000570 975 VQN---------------------------EF---------------------------NMRLVQIV---TQLKEQ--GM 995 (1415)
Q Consensus 975 v~~---------------------------ef---------------------------~~~l~~I~---~~L~e~--gl 995 (1415)
+.. .| ...+..++ ..+.+. .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 000 00 00000010 111110 01
Q ss_pred chhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh-----hh-cccccceEEEEEEE--E-cCcceEEE
Q 000570 996 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1066 (1415)
Q Consensus 996 ~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~-----l~-~~~~~~~~VlEvk~--~-~G~Gtvi~ 1066 (1415)
....+ .-+..+|+++.||+++.||..||+.|+.+++.+.... +. ...+|.+.|+.+.. . ..+|.+..
T Consensus 240 ~~~~~----~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAAF----HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHHH----hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 11111 2257789999999999999999999999987654211 11 13458899999876 5 47899999
Q ss_pred EEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeeccccccccCCCceE
Q 000570 1067 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLY 1140 (1415)
Q Consensus 1067 ~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~ 1140 (1415)
++|++|+|+.|+.|....++. .-+|..++....... ....+ +.+|-.+.+.++.....|+.+.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~-------~~v~~--a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGDR-------EHVEE--AYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCCc-------eEcce--eCCCCEEEEECCCCcccCCEec
Confidence 999999999999986544321 123333322211111 11111 3346666677777777777663
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=222.85 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=118.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccccCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 889 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~ 889 (1415)
..|+|+||+|||||||+++|++.... ....+|+|.+.+...+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 35999999999999999999864211 112466666665444433 2346
Q ss_pred EEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccccCCccCCChhHHHHH
Q 000570 890 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 890 l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
++|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ....
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHHH----
Confidence 99999999999999999999999999999999999999999999999999997 789999999962 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhh
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
+......+...|...|++. .++|+||+||++|.|+..
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112234556666666642 358999999999999753
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=232.21 Aligned_cols=287 Identities=18% Similarity=0.285 Sum_probs=195.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccceee---eeccccccc--
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERT---RELKANATL-- 885 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~~t---~~v~~~~~~-- 885 (1415)
...|+|+|.||+||||||..|++..+..|+ ..|.|..+|...+.++...... -....+.+|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 345999999999999999999876655443 2445555554333322211000 000011111
Q ss_pred ----CCCCEEEEeCCCCcchhhHHhhccC--cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccC
Q 000570 886 ----KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTC 959 (1415)
Q Consensus 886 ----~~~~l~iIDTPGHe~F~~lr~rgl~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~ 959 (1415)
...-|+|||..||+.|...+..|+. ..|+.+|+|.++.|+-..|.+||.++..+.+|++||++|||+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP----- 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP----- 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc-----
Confidence 1124899999999999988887765 58999999999999999999999999999999999999999983
Q ss_pred CChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhh---------hcccCC--CcceeEEeCCCCCCCChhhHHH
Q 000570 960 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY---------YKNKDR--GETFNIVPTSAISGEGIPDLLL 1028 (1415)
Q Consensus 960 ~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~---------~~~~~~--g~~v~iVpvSA~tGeGI~dLl~ 1028 (1415)
+++.+.. +.-+...|...|...-.. +...+| ...||||.+|.+||+|++-|..
T Consensus 288 --ANiLqEt--------------mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 288 --ANILQET--------------MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred --HHHHHHH--------------HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 4443222 222333344444321100 001122 3568999999999999965544
Q ss_pred HHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC-CcceeehhhhcCCCCCcccee
Q 000570 1029 LLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRV 1107 (1415)
Q Consensus 1029 ~L~~l~~~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~-g~i~~~Ir~ll~p~p~~e~rv 1107 (1415)
+ +.++.. ...+..+.|+.+.|.++|+++|.||++.+.+.+|+|+.+|.+++++.. |.. .|-|++.+
T Consensus 352 F-LNlls~--R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F--------~pI~iKSI-- 418 (641)
T KOG0463|consen 352 F-LNLLSL--RRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDF--------MPIPIKSI-- 418 (641)
T ss_pred H-HhhcCc--ccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCe--------eeeehhhh--
Confidence 4 444432 234567888999999999999999999999999999999988886543 211 12222211
Q ss_pred eeeeeehhhhccccceeeeccccccccCCCceEEeCCC
Q 000570 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1108 k~~~~~~keV~aa~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
-...+++..|+.++...+++..+.......+|++|++.
T Consensus 419 HRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 419 HRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred hhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 11235556777777778888888888888888888765
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=248.32 Aligned_cols=232 Identities=25% Similarity=0.271 Sum_probs=159.3
Q ss_pred EeCCCCCHHHHHHHHHcCcccc---c---------------ccCceeEeeceeEecccccceeeeecccccccCCCCEEE
Q 000570 831 MGHVDTGKTKLLDCIRGTNVQE---G---------------EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 892 (1415)
Q Consensus 831 lGhvdaGKTTLLd~L~~t~v~~---g---------------eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~i 892 (1415)
+||+|||||||+++|++..-.. + ..+|||.......+. |....|+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~----------------~~~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE----------------WKGHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE----------------ECCEEEEE
Confidence 6999999999999997432110 0 124444444433333 33456999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||.+|...+.+++..+|++|||||+..|+..++..+|..+...++|+|||+||+|+.. ..+...+....
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~ 137 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQ 137 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863 22222222111
Q ss_pred HHH----------------------------------------------HHHHHHHHHHHHHHHHHcC-Cchhhhhccc-
Q 000570 973 TDV----------------------------------------------QNEFNMRLVQIVTQLKEQG-MNTELYYKNK- 1004 (1415)
Q Consensus 973 ~~v----------------------------------------------~~ef~~~l~~I~~~L~e~g-l~~e~~~~~~- 1004 (1415)
..+ ..........++..+.+.. -..+.|+.+.
T Consensus 138 ~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~ 217 (668)
T PRK12740 138 EKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEE 217 (668)
T ss_pred HHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCC
Confidence 100 0000000111111111110 0000111110
Q ss_pred --------------CCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH--------------hhhcccccceEEEEEE
Q 000570 1005 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVK 1056 (1415)
Q Consensus 1005 --------------~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e--------------~l~~~~~~~~~VlEvk 1056 (1415)
..+..+|++.+||++|.||..||+.|+.+++.+... ...+..++.+.|+.+.
T Consensus 218 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~ 297 (668)
T PRK12740 218 LSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTM 297 (668)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEee
Confidence 124578999999999999999999999988765421 1133456888999999
Q ss_pred EEcCcceEEEEEEEeeEEccCCEEEEecc
Q 000570 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1085 (1415)
Q Consensus 1057 ~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~ 1085 (1415)
+.++.|.++.++|++|+|+.||.|.+++.
T Consensus 298 ~~~~~G~i~~~RV~sG~L~~g~~v~~~~~ 326 (668)
T PRK12740 298 DDPFVGKLSLVRVYSGTLKKGDTLYNSGT 326 (668)
T ss_pred ecCCCCcEEEEEEeeeEEcCCCEEEeCCC
Confidence 98999999999999999999999987654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=255.28 Aligned_cols=237 Identities=22% Similarity=0.237 Sum_probs=152.7
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANAT 884 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~ 884 (1415)
..+|+ |+|+||+|||||||+++|+...-. ....+|+|.+...+++.+ ...
T Consensus 17 ~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~~ 82 (720)
T TIGR00490 17 KFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EYE 82 (720)
T ss_pred ccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------eec
Confidence 46787 999999999999999999853110 001134443332222111 122
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+.. +++
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~~ 155 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI-------NEL 155 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc-------chh
Confidence 3445699999999999999999999999999999999999999999999999889999999999999963 222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCcceeEEeCCCCCCCC-------------------
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------- 1022 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~---~~~~~~~g~~v~iVpvSA~tGeG------------------- 1022 (1415)
... ...++..|...+..+...+... +...+ +.... ....++..|++.+++
T Consensus 156 ~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (720)
T TIGR00490 156 KLT----PQELQERFIKIITEVNKLIKAM-APEEFRDKWKVRV---EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKY 227 (720)
T ss_pred cCC----HHHHHHHHhhhhHHHHhhhhcc-CCHHHhhceEech---hhCCHHHHhhhhcccccchhHhhcCCCHHHHHHH
Confidence 222 2234444444444444333221 00000 00000 000112222322211
Q ss_pred ---------------hhhHHHHHHHHHHHHHHH---h-------------------hhcccccceEEEEEEEEcCcceEE
Q 000570 1023 ---------------IPDLLLLLVQWTQKTMVE---K-------------------LTFRNELQCTVLEVKVIEGHGTTI 1065 (1415)
Q Consensus 1023 ---------------I~dLl~~L~~l~~~~l~e---~-------------------l~~~~~~~~~VlEvk~~~G~Gtvi 1065 (1415)
+..||+.|+.+++.+... . .....++.+.|+.+...++.|+++
T Consensus 228 ~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia 307 (720)
T TIGR00490 228 CKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVA 307 (720)
T ss_pred HHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEE
Confidence 234566666655444310 0 011345788999998889999999
Q ss_pred EEEEEeeEEccCCEEEEeccC
Q 000570 1066 DVVLVNGVLHEGDQIVVCGLQ 1086 (1415)
Q Consensus 1066 ~~iV~~G~Lk~GD~Ivv~g~~ 1086 (1415)
.++|++|+|++||.|++++..
T Consensus 308 ~~RV~sGtL~~G~~l~~~~~~ 328 (720)
T TIGR00490 308 VGRLYSGTIRPGMEVYIVDRK 328 (720)
T ss_pred EEEEEeCEEcCCCEEEEcCCC
Confidence 999999999999999887654
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=223.01 Aligned_cols=223 Identities=27% Similarity=0.307 Sum_probs=162.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccce----eeeecccccc------cCCCCEEE
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE----RTRELKANAT------LKVPGLLV 892 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~----~t~~v~~~~~------~~~~~l~i 892 (1415)
.+|+++||||||||||+.+|.+-- ....-.+|||+.+|+...+.-...+ .+......+. --.+.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 458999999999999999998642 2233358999999875433221110 0000000010 11346999
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+|+|||+-....+..|+.+.|.|||||+++.. .+|||.|||..|...++ .+|||-||||++.. .+.
T Consensus 91 VDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A--- 158 (415)
T COG5257 91 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA--- 158 (415)
T ss_pred eeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH---
Confidence 99999999999999999999999999999975 68999999999998886 78999999999730 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccce
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1050 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~ 1050 (1415)
-+...+|...+. | .+..+.|+||+||..+.||+.|++.|..+++.+. .+...+.++
T Consensus 159 ---------lE~y~qIk~Fvk--G----------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~---rd~~~~p~m 214 (415)
T COG5257 159 ---------LENYEQIKEFVK--G----------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPE---RDLDKPPRM 214 (415)
T ss_pred ---------HHHHHHHHHHhc--c----------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCc---cCCCCCceE
Confidence 122233433332 1 1235679999999999999999999988765442 245667889
Q ss_pred EEEEEEEEcCc--------ceEEEEEEEeeEEccCCEEEEec
Q 000570 1051 TVLEVKVIEGH--------GTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1051 ~VlEvk~~~G~--------Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.|..+|.+.-- |-++-+.|.+|.|++||.|-+-+
T Consensus 215 ~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 215 YVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 99999877543 55677889999999999997754
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=203.85 Aligned_cols=165 Identities=55% Similarity=0.816 Sum_probs=128.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6899999999999999999998888777777899888776665431 112459999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 985 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~ 985 (1415)
.+++..+|++|+|||+.++...++.+++..+...++|+|||+||+|+... .. ..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~-------------------~~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NP-------------------ER 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cH-------------------HH
Confidence 99999999999999999999999999999999999999999999998621 00 00
Q ss_pred HHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 986 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 986 I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+...+....... + ..++..++++++||.+|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111111111100 0 0123457899999999999999999987654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=250.95 Aligned_cols=132 Identities=26% Similarity=0.340 Sum_probs=99.6
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
+.++|| |||+||+|||||||+++|++.+- .....+|||...+...+.|..............
T Consensus 16 ~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 16 KHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred ccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 467898 99999999999999999985431 111235666665555554431100000000000
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
......|+|||||||.+|...+.++++.||+||||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 1123458999999999999999999999999999999999999999999999999999999999999997
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=215.25 Aligned_cols=111 Identities=34% Similarity=0.332 Sum_probs=91.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~------------------geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+|+|+||+|||||||+++|++..-.. ...+|||.+.....+. |...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~----------------~~~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF----------------WKDH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE----------------ECCE
Confidence 38999999999999999998532111 1123444444444333 3445
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.++|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||+|+.
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=215.91 Aligned_cols=255 Identities=20% Similarity=0.283 Sum_probs=164.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeec--eeEeccccc-ceeeeeccc---ccccCCCCEEEEeCCCCcc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--ATYFPAENI-RERTRELKA---NATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~ig--a~~~~~~~i-~~~t~~v~~---~~~~~~~~l~iIDTPGHe~ 900 (1415)
.++||.|+|+|||||..+|+.-.-+...+|.+.-.-+ .+...|-.+ ++|.+.|.. .++|....|+|+|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 3999999999999999999843222222222211100 011112111 223333322 3456667799999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEeccccc---------------------CCccC
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLY---------------------GWKTC 959 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~---------------------~w~~~ 959 (1415)
|+.-+.|-+..+|.||+|||+..|+++||+.++..|+.+++|+|-+|||+|+.. .|-..
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG 173 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIG 173 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccccccc
Confidence 999999999999999999999999999999999999999999999999999963 12111
Q ss_pred CChhHHHHHHhh-------------------------hHHHHHHHHHHH-HHHHH---HHHHc--CCchhhhhcccCCCc
Q 000570 960 RNAPIVKAIKQQ-------------------------NTDVQNEFNMRL-VQIVT---QLKEQ--GMNTELYYKNKDRGE 1008 (1415)
Q Consensus 960 ~~a~~~~~l~~q-------------------------~~~v~~ef~~~l-~~I~~---~L~e~--gl~~e~~~~~~~~g~ 1008 (1415)
...+|.-.+... ...+-..+...+ ..++. .+... -+..+.+. -|.
T Consensus 174 ~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl----~G~ 249 (528)
T COG4108 174 MGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL----AGE 249 (528)
T ss_pred CCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh----cCC
Confidence 111111000000 000000000000 11111 11111 12222222 256
Q ss_pred ceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh-----c-ccccceEEEEEEEE---cCcceEEEEEEEeeEEccCCE
Q 000570 1009 TFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVNGVLHEGDQ 1079 (1415)
Q Consensus 1009 ~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~-----~-~~~~~~~VlEvk~~---~G~Gtvi~~iV~~G~Lk~GD~ 1079 (1415)
..|+|..||+++.||..+|+.++.|++.+...... + .+.|.+.|+.+... .++-+++..+|.+|.+..|..
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMk 329 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMK 329 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCce
Confidence 78999999999999999999999998766544322 2 33488889888642 467788999999999999998
Q ss_pred EEEecc
Q 000570 1080 IVVCGL 1085 (1415)
Q Consensus 1080 Ivv~g~ 1085 (1415)
+...-+
T Consensus 330 v~h~rt 335 (528)
T COG4108 330 VTHVRT 335 (528)
T ss_pred eeeeec
Confidence 866543
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=210.11 Aligned_cols=184 Identities=24% Similarity=0.267 Sum_probs=122.8
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeceeEecccccce---eeeecc-----ccccc
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRE---RTRELK-----ANATL 885 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~ge--------------agGITq~iga~~~~~~~i~~---~t~~v~-----~~~~~ 885 (1415)
|+|+||+++|||||+++|....+..+. ..|+|..+....+....-.. ....+. ..+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 789999999999999999865443322 14555433222221111000 000000 01123
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccC--cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChh
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 963 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~ 963 (1415)
....++|||||||..|...+.+++. .+|++|||||+.+|+++++.+++.++...++|+|||+||+|++. ..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~- 154 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------AN- 154 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HH-
Confidence 3457999999999999998888875 79999999999999999999999999999999999999999862 11
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchh-----------hhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 964 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-----------LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 964 ~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e-----------~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+...+..+...|...|+..- ....+..++..+|+|++||+||+||+.|+..|..
T Consensus 155 --------------~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 --------------ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred --------------HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 112222233333333232210 0112234566789999999999999999887754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-21 Score=219.38 Aligned_cols=290 Identities=24% Similarity=0.293 Sum_probs=194.6
Q ss_pred CcccccccCCCceeEEeCCCCCHHHHHHHHHcC--------ccccc----------ccCceeEeeceeEecccccceeee
Q 000570 816 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGT--------NVQEG----------EAGGITQQIGATYFPAENIRERTR 877 (1415)
Q Consensus 816 ~~~~~~~lR~piV~IlGhvdaGKTTLLd~L~~t--------~v~~g----------eagGITq~iga~~~~~~~i~~~t~ 877 (1415)
.++....+|+ |+||.|+|+||||...+|++- .|..| +.+|||.|..+..|.|.
T Consensus 30 ~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------- 100 (753)
T KOG0464|consen 30 INPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------- 100 (753)
T ss_pred CCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc-------
Confidence 3455567899 999999999999999999852 22222 34778888777766554
Q ss_pred ecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCc
Q 000570 878 ELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 957 (1415)
Q Consensus 878 ~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~ 957 (1415)
++.|++||||||.+|+-.+.|.+++.|++|.|+|++.|+++||..+|++...+++|.+++|||||.+
T Consensus 101 ---------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~---- 167 (753)
T KOG0464|consen 101 ---------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL---- 167 (753)
T ss_pred ---------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----
Confidence 4569999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCChhHHHHHHhhhHHH-------------------------------------------------------HHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDV-------------------------------------------------------QNEFNMR 982 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v-------------------------------------------------------~~ef~~~ 982 (1415)
.++|...+....+.+ ..++...
T Consensus 168 ---~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~ 244 (753)
T KOG0464|consen 168 ---AANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEA 244 (753)
T ss_pred ---hhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHH
Confidence 345544443321110 0111111
Q ss_pred HHHHHHHHHHcC--Cc---hhhhhcc----------------cCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 983 LVQIVTQLKEQG--MN---TELYYKN----------------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 983 l~~I~~~L~e~g--l~---~e~~~~~----------------~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
-..++.++.... |. .+-|..| ..-...+|+.+.||+++.||..||+.+.-+++.+-...
T Consensus 245 knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern 324 (753)
T KOG0464|consen 245 KNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN 324 (753)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcc
Confidence 111111111100 00 0000011 00124679999999999999999999887776443222
Q ss_pred ---h-hcccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhh
Q 000570 1042 ---L-TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1117 (1415)
Q Consensus 1042 ---l-~~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV 1117 (1415)
| -|.+++.+..+.|-..+.+|+.+..+||+|+|+..-.|.- .+|.....|-.|+.|-.- .|.+|
T Consensus 325 yeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~n--in~~~se~~~kl~~pfad----------e~~~i 392 (753)
T KOG0464|consen 325 YEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFN--INGMCSEGILKLFLPFAD----------EHREI 392 (753)
T ss_pred hHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeee--cccccccchHhhhccchh----------hhhhh
Confidence 2 2355666666666778899999999999999999876642 334444455566655421 12222
Q ss_pred ccc-cceeeeccccccccCCCceEEe
Q 000570 1118 KAA-QGIKITAQGLEHAIAGTGLYVV 1142 (1415)
Q Consensus 1118 ~aa-~gv~i~~~gL~~~~aG~~~~v~ 1142 (1415)
..- .|..-...||.....|+.++..
T Consensus 393 ~qlsagnialt~glk~tatgdtivas 418 (753)
T KOG0464|consen 393 EQLSAGNIALTAGLKHTATGDTIVAS 418 (753)
T ss_pred hhcccccEEEEecceeeccCCeEEec
Confidence 221 2322233588888889887644
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=206.21 Aligned_cols=175 Identities=25% Similarity=0.260 Sum_probs=122.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc---cccccCceeEeeceeEecccccceeeeecc---------cc--------cccC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELK---------AN--------ATLK 886 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v---~~geagGITq~iga~~~~~~~i~~~t~~v~---------~~--------~~~~ 886 (1415)
+|+|+||+|||||||+.+|.+... .....+|+|..+++..+.+........... .. ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 489999999999999999986621 334467888888877765531100000000 00 0011
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
...|+|||||||..|...+.+++..+|++|||||+.++ +.++|.++|..+...++ |+|||+||+|+.. ...+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~------~~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK------EEQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC------HHHH
Confidence 25699999999999999999999999999999999984 78899999988887776 6999999999962 1111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+..+...+.... ...+++|++||++|+||.+|+.+|...+
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 111122222222111 1246899999999999999999887543
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=240.13 Aligned_cols=126 Identities=26% Similarity=0.323 Sum_probs=98.7
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
...+|| |+|+||+|||||||+++|++..- .....+|||.+.+..++.|..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 456887 99999999999999999986321 011235666666555554432100 000
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
......|+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 1113459999999999999999999999999999999999999999999999999999999999999996
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-21 Score=209.98 Aligned_cols=172 Identities=26% Similarity=0.380 Sum_probs=120.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~g-------------------------------eagGITq~iga~~~~~~~i~~~ 875 (1415)
.|+|+||+|||||||+++|++..-... ..+|+|.++...++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-------- 72 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-------- 72 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--------
Confidence 389999999999999999985321110 01344444333332
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccccc
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLY 954 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~~ 954 (1415)
.+....++|||||||..|...+..++..+|++|||||+..|+..++..++.++...++| +|||+||||+..
T Consensus 73 --------~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 73 --------STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred --------ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 23445799999999999998888899999999999999999999999999988888865 677999999862
Q ss_pred CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 955 GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 955 ~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
|. .. .+...+..+...+...++ ..+++||+||++|.||.+....+.++.
T Consensus 145 -~~----~~--------------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~ 193 (208)
T cd04166 145 -YS----EE--------------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYS 193 (208)
T ss_pred -CC----HH--------------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCC
Confidence 21 00 111111222223333332 135899999999999988775555555
Q ss_pred HHHHHHhhhcc
Q 000570 1035 QKTMVEKLTFR 1045 (1415)
Q Consensus 1035 ~~~l~e~l~~~ 1045 (1415)
.+.|++.|...
T Consensus 194 g~~~~~~~~~~ 204 (208)
T cd04166 194 GPTLLEHLETV 204 (208)
T ss_pred CCcHHHHHhcC
Confidence 66777766543
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=209.47 Aligned_cols=194 Identities=28% Similarity=0.345 Sum_probs=126.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecc---cccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELK---ANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~---~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|+|+||+|+|||||+++|++........+.+. -|.+...+.. -+.+...+. ..+.+....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986432211111110 0111111110 011111111 1123445579999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH------
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ------ 976 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~------ 976 (1415)
..+.++++.+|++|||||+.+|+..+|..+|.++...++|+|||+||+|+. ++++...+......+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i~~~~~~~~~~~ 151 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEIKEKLSSDIVPM 151 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999999999999999999999999996 3455444443221110
Q ss_pred ----------------HHHHHHHHHHHHHHHHcCCchhhhhccc---------------CCCcceeEEeCCCCCCCChhh
Q 000570 977 ----------------NEFNMRLVQIVTQLKEQGMNTELYYKNK---------------DRGETFNIVPTSAISGEGIPD 1025 (1415)
Q Consensus 977 ----------------~ef~~~l~~I~~~L~e~gl~~e~~~~~~---------------~~g~~v~iVpvSA~tGeGI~d 1025 (1415)
..+-+.+...-+.|++ .|++.. .-+..+|+++.||.++.|+..
T Consensus 152 ~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e------~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ 225 (237)
T cd04168 152 QKVGLAPNICETNEIDDEFWETLAEGDDELLE------KYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEE 225 (237)
T ss_pred ECCcEeeeeeeeeeccHHHHHHHhcCCHHHHH------HHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHH
Confidence 0111111111112222 222221 125789999999999999999
Q ss_pred HHHHHHHHHH
Q 000570 1026 LLLLLVQWTQ 1035 (1415)
Q Consensus 1026 Ll~~L~~l~~ 1035 (1415)
||+.|+.+++
T Consensus 226 ll~~~~~~~p 235 (237)
T cd04168 226 LLEGITKLFP 235 (237)
T ss_pred HHHHHHHhcC
Confidence 9999988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-21 Score=210.40 Aligned_cols=174 Identities=25% Similarity=0.382 Sum_probs=118.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEeccccccee
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i~~~ 875 (1415)
+|+|+||+|||||||+++|++..-. ....+|+|.++..+.+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~------- 73 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE------- 73 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-------
Confidence 3899999999999999999743110 01123444444443332
Q ss_pred eeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccC-------CCChhHHHHHHHHHhcC-CceEEEE
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 947 (1415)
Q Consensus 876 t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~-------Gv~~QT~E~l~llk~~~-vP~IVaI 947 (1415)
+..+.|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++..++ .|+|||+
T Consensus 74 ---------~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 74 ---------TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred ---------eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 344579999999999999999999999999999999998 57789999998888877 5899999
Q ss_pred Eeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhH
Q 000570 948 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 948 NKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dL 1026 (1415)
||||++. .|. .. .|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~---~~---------------~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWS---EE---------------RYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred Ecccccccccc---HH---------------HHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999962 121 01 1111222233334444432 13579999999999999744
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 000570 1027 LLLLVQWTQKTMVEKLTF 1044 (1415)
Q Consensus 1027 l~~L~~l~~~~l~e~l~~ 1044 (1415)
-..+.++....|.+.|..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 333333333555555543
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=209.75 Aligned_cols=282 Identities=20% Similarity=0.275 Sum_probs=189.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeee--------------ecccc--------cc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTR--------------ELKAN--------AT 884 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~--------------~v~~~--------~~ 884 (1415)
.|+|+|..|+||||||..|+......|..+. .++.+.++.+.-..++. .+++. ..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrA---Rln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRA---RLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCee---eeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3899999999999999999876655543211 12222222221111111 11111 01
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCc--ccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~--aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
-...-++|||..||..|......|+.. .|+|+|||+|+.|+...|++||.++.++++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112359999999999999988888775 7999999999999999999999999999999999999999973 11
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-----------cccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY-----------KNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~-----------~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
.+ ...+..+.+.|...|.....+. .+...+..+|||.+|.++|+|+.- +..++
T Consensus 320 ~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fL 383 (591)
T KOG1143|consen 320 GL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFL 383 (591)
T ss_pred hH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHH
Confidence 11 2223344444555554321111 012246779999999999999954 44444
Q ss_pred HHHHHHH--HHhhh-cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceee
Q 000570 1032 QWTQKTM--VEKLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1108 (1415)
Q Consensus 1032 ~l~~~~l--~e~l~-~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk 1108 (1415)
..+.+.. .++.. ...+..+.|.|+|.++..|+++-++|..|.|++|+.+++++.. .+.+..++|.
T Consensus 384 n~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~------------DG~F~~itV~ 451 (591)
T KOG1143|consen 384 NCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMK------------DGTFEKITVG 451 (591)
T ss_pred hhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCC------------CCceeEEEee
Confidence 3333211 11111 1345678999999999999999999999999999999987654 2223344444
Q ss_pred eeeeeh---hhhccccceeeeccccccccCCCceEEeCCC
Q 000570 1109 GTYLHH---KQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1109 ~~~~~~---keV~aa~gv~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
++.-+. .-|.+++...+++...+.+....+|+++.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 443322 2345677778888877778888888887654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-20 Score=190.76 Aligned_cols=158 Identities=33% Similarity=0.463 Sum_probs=115.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+|+|+|++++|||||+++|++.. +......|+|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 68999999999999999998643 2222235677666554443220 23599999999999988
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC-ceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..++..+|++|||+|+.+++.+++.+.+..+...+. |+|+++||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999999999998888777776 99999999999621 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+...++ ..++++++||++|.||.+|+..|..
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1222222322111 2368999999999999999887753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=199.66 Aligned_cols=180 Identities=27% Similarity=0.403 Sum_probs=123.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC-------cccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t-------~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.|+|+||+|+|||||+++|++. .......+|+|.+++...+.+...... ... .........++|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL-REL-INPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc-ccc-ccccccCceEEEEECCCcH
Confidence 4899999999999999999862 122233567888887666554311000 000 0011224569999999999
Q ss_pred chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.|.....+++..+|++|+|||+.+|.+.++.+++.++...++|+||++||+|+... ..+...+. .+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHHH-
Confidence 99888888889999999999999999999988888877788999999999999621 11111110 01111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111211111 236899999999999999999998766543
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=213.75 Aligned_cols=263 Identities=24% Similarity=0.403 Sum_probs=186.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCceeEeeceeEeccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENI 872 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i 872 (1415)
+...++|+||||+||||+-+.|+..... ..+..|-|...|..+|.+
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt--- 154 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET--- 154 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe---
Confidence 3445899999999999998887632100 011122333333333332
Q ss_pred ceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-----C--ChhHHHHHHHHHhcCC-ceE
Q 000570 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFI 944 (1415)
Q Consensus 873 ~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-----v--~~QT~E~l~llk~~~v-P~I 944 (1415)
....++|+|+|||..|...+..|++++|+++|||++..| + ..||++|..+++..++ .+|
T Consensus 155 -------------e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 155 -------------ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred -------------cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 234699999999999999999999999999999999764 3 3699999999999996 789
Q ss_pred EEEEeccccc-CCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCCh
Q 000570 945 VALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 1023 (1415)
Q Consensus 945 VaINKiD~~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 1023 (1415)
|+|||||-+. +|.. .+|.+....+...|...|++. -..+-++|+|+++|.++
T Consensus 222 v~vNKMddPtvnWs~------------------eRy~E~~~k~~~fLr~~g~n~---------~~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSN------------------ERYEECKEKLQPFLRKLGFNP---------KPDKHFVPVSGLTGANV 274 (501)
T ss_pred EEEEeccCCccCcch------------------hhHHHHHHHHHHHHHHhcccC---------CCCceeeecccccccch
Confidence 9999999742 4543 455666677777788788774 35678999999999999
Q ss_pred hhHHHH-HHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehh
Q 000570 1024 PDLLLL-LVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1094 (1415)
Q Consensus 1024 ~dLl~~-L~~l~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir 1094 (1415)
.+.... ..+|..+.+++.|. .+.|++|+|.+-+ ..+||++.+.|.+|.++.|+.+++++...
T Consensus 275 k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~------- 345 (501)
T KOG0459|consen 275 KDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKT------- 345 (501)
T ss_pred hhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCc-------
Confidence 988863 33343333333222 2456889988743 57889999999999999999999976431
Q ss_pred hhcCCCCCccceeeeeeeehhhhc---cccceeeeccccccccCCCceEEeCCCcc
Q 000570 1095 ALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGPDDD 1147 (1415)
Q Consensus 1095 ~ll~p~p~~e~rvk~~~~~~keV~---aa~gv~i~~~gL~~~~aG~~~~v~~~e~~ 1147 (1415)
.+.|.++|....++. ++-.++|.+.|++.-..-.+|+++.+...
T Consensus 346 ---------~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 346 ---------NVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred ---------ceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 123344444333333 33348999999887555555888877653
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-20 Score=209.42 Aligned_cols=129 Identities=28% Similarity=0.370 Sum_probs=93.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEeccccc-ceeeeecc---cccccCCCCEEEEeCC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENI-RERTRELK---ANATLKVPGLLVIDTP 896 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i-~~~t~~v~---~~~~~~~~~l~iIDTP 896 (1415)
+|| |+|+||+|+|||||+++|++..-.....|.+.. ..|.+...+... +.+...+. ..+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 577 999999999999999999864322222111110 011111111110 11111111 1234556679999999
Q ss_pred CCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 897 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 897 GHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
||.+|...+.++++.+|++|||||+..|+..+|..+|.++...++|+|||+||+|+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999988899999999999999999999999999999998999999999999985
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=181.97 Aligned_cols=109 Identities=65% Similarity=1.020 Sum_probs=104.1
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeec
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1127 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~ 1127 (1415)
++|+|+|++..+|+|+|++++|++|+||.||+|++|+++||++|+||+||+|+|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEeCCCccHHHHHHHHH
Q 000570 1128 QGLEHAIAGTGLYVVGPDDDLEDVKEEAM 1156 (1415)
Q Consensus 1128 ~gL~~~~aG~~~~v~~~e~~~~~~~~~~~ 1156 (1415)
+||+.++||++|+|+.++++++.+.++++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~~ 109 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEVM 109 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999998888776543
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. |
| >PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=185.92 Aligned_cols=92 Identities=38% Similarity=0.601 Sum_probs=82.3
Q ss_pred ccCCceEEecCCcccHHHHHHHhc---cCCceeeeEEeeeCccchhhHHHHHhhhhcccCCcEEEEecCCCCHHHHHHHH
Q 000570 1168 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1244 (1415)
Q Consensus 1168 ~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~i~~~~iG~v~~~DV~~A~~~~~~~~~~a~ILaFnVkv~~~a~~~A~ 1244 (1415)
....+||||||++||||||..+|. +++++++|++++|||||++||.+|++ .+|+||||||++++.++.+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~------~~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASA------SNAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHH------HC-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHh------hCCEEEEeeCCCCHHHHHHHH
Confidence 456799999999999999999874 45789999999999999999999998 479999999999999999999
Q ss_pred HcCCeEEEcchhhchHHHHHH
Q 000570 1245 ELGVKIFIADIIYHLFDQFTA 1265 (1415)
Q Consensus 1245 ~~gV~I~~~~IIY~L~d~~~~ 1265 (1415)
+.||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
|
IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-20 Score=203.32 Aligned_cols=120 Identities=33% Similarity=0.427 Sum_probs=91.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeceeEecccccceeeeecccccccCCCCEE
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 891 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~ 891 (1415)
|+|+||+|||||||+++|+...-. ....+|||.......+.+...... ........|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 999999999999999999853210 112345555544333332210000 0001134689
Q ss_pred EEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998999999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=193.54 Aligned_cols=158 Identities=30% Similarity=0.395 Sum_probs=110.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccccc---------------ccCceeEeeceeEecccccceeeeecccccccCCCCEEE
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEG---------------EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 892 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~g---------------eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~i 892 (1415)
|+|+||+++|||||+++|++...... ...|+|.+...+.+.+.. .......|+|
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~~~l 71 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYLLNL 71 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEEEEE
Confidence 99999999999999999986421100 112333322221111100 0112235889
Q ss_pred EeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 893 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 893 IDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
||||||..|..++.+++..+|++|||+|+.++...++...|..+...++|+|+|+||+|+.. .....
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-------~~~~~------ 138 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS-------ADPER------ 138 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc-------CCHHH------
Confidence 99999999999999999999999999999999999999888888778899999999999852 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e-~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+...+.. .++. ..++|++||++|.||.+|+.+|...+
T Consensus 139 -------------~~~~~~~~~~~~------------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 139 -------------VKQQIEDVLGLD------------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------------HHHHHHHHhCCC------------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 0111111 1211 13589999999999999999887543
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=193.43 Aligned_cols=157 Identities=31% Similarity=0.357 Sum_probs=109.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcC--cccccc--------------cCceeEeeceeEecccccceeeeecccccccC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT--NVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 886 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t--~v~~ge--------------agGITq~iga~~~~~~~i~~~t~~v~~~~~~~ 886 (1415)
+|+ |+|+||+++|||||+++|++. .+.... ..|+|.+.....+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 466 999999999999999999862 222111 1222222211111 123
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
...++|||||||..|..++..+++.+|++|||||+.+++.+++..++..+...++|+|||+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34699999999999999999999999999999999999989998888888788999999999999962 11111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 1027 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl 1027 (1415)
.+..+...+...+.... ...+++|++||++|.|+.++-
T Consensus 137 ---------------~~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 137 ---------------VVDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred ---------------HHHHHHHHHHHhCCccc--------cCccCEEEeehhccccccccc
Confidence 11222222333222111 123689999999999996663
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=191.36 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=141.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC-Ccc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-HES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG-He~ 900 (1415)
.+|+..|||+|.+|+|||||||+|++..+.. +.+ ...+++.+...+. .....++.|||||| |..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------vS~------k~QTTR~~I~GI~---t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI------VSP------KPQTTRNRIRGIV---TTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe------ecC------CcchhhhheeEEE---EcCCceEEEEeCCCCCCc
Confidence 4678889999999999999999999987652 111 1111122212221 12235799999999 332
Q ss_pred ---h----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 901 ---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 901 ---F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
+ ......++..+|+++||||+.+++.+.....++.++..++|+|+++||||+... .
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~----------- 130 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------K----------- 130 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------H-----------
Confidence 1 223446778899999999999999999999999999988999999999999742 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH------------------
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~------------------ 1035 (1415)
..+..+...+... ..+..+||+||++|.|+..|+..+..+++
T Consensus 131 -------~~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 131 -------TVLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred -------HHHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 0012222233222 13448999999999999999999987764
Q ss_pred ---HHHHHhhhc--cc--cc--ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeeh
Q 000570 1036 ---KTMVEKLTF--RN--EL--QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1093 (1415)
Q Consensus 1036 ---~~l~e~l~~--~~--~~--~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~I 1093 (1415)
+.+++++.. .+ |. ...|.++...+.....+.+.|+ +=|.++.-++.|-+|..+..|
T Consensus 191 ~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~iK~I 255 (298)
T COG1159 191 LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMIKKI 255 (298)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHHHHH
Confidence 123333322 12 21 2223332222344445555554 447777777788777654444
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=186.43 Aligned_cols=170 Identities=35% Similarity=0.443 Sum_probs=118.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccccccc----------------CceeEeeceeEecccccceeeeecccccccCCCCE
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~gea----------------gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l 890 (1415)
+|+|+|++|+|||||+++|++.....+.. .|+|.+.....+ .+....+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------EWPDRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----------------eeCCEEE
Confidence 38999999999999999998765543321 223333222211 1223469
Q ss_pred EEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+||||||+.+|..++..++..+|++|+|+|+.++...++.+++.++...+.|++|++||+|+.. ...+
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~------ 132 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDL------ 132 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcH------
Confidence 9999999999999999999999999999999999999999999999888999999999999962 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+..+...+...++.... -........+++|++||++|.||.+++.+|..++
T Consensus 133 ---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 133 ---------EEVLREIKELLGLIGFISTK-EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---------HHHHHHHHHHHccccccchh-hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 11122222333322211000 0000012457999999999999999999987764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=195.26 Aligned_cols=125 Identities=24% Similarity=0.272 Sum_probs=90.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecc---cccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELK---ANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~---~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|+|+||+|+|||||+++|++........+.++ .|.+...+.. .+.+...+. ..+.|....++|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999986432211111111 1111111110 011111111 1123445579999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.+++..+|++|+|||+..|...+|..+|.++...++|+|||+||+|+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=189.95 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=112.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccc-------------------cCceeEeeceeEecccccceeeeecccccccCCC
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGE-------------------AGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~ge-------------------agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
|+|+||+|||||||+++|+........ ..|+|.......+.+... .....
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~~~~~ 71 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------KGKSY 71 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------CCCEE
Confidence 999999999999999999865432211 122332222222211110 01123
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.|+|||||||.+|...+.+++..+|++|+|||+.+|...++..++..+...++|+|||+||+|++.. . ...+
T Consensus 72 ~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~--~~l~----- 143 (213)
T cd04167 72 LFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLIL-E--LKLP----- 143 (213)
T ss_pred EEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcc-c--ccCC-----
Confidence 5899999999999999999999999999999999999999988888888888999999999998620 0 0000
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
.......|...+..+...+...++....++- .-...++..||..|+++.
T Consensus 144 ---~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 144 ---PNDAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 0112233444455555555555543321110 011247889999999984
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=194.51 Aligned_cols=85 Identities=36% Similarity=0.467 Sum_probs=68.7
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHH
Q 000570 510 MSKQVREMQEA-LARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE-KLLKKKQEGKLLTGKQKE 587 (1415)
Q Consensus 510 ~~~~~~~~~e~-~~~~~~eee~~~reeEE~~r~eEEe~~~~ee~er~~ee~~~~k~~~~ke-k~~~~k~e~~~~~~k~~~ 587 (1415)
+++++++++++ ++++|++||+.||++||+++++++|++.+|.++++++.+++++++++.+ ++++.+|++. ++++
T Consensus 219 ~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~----~a~a 294 (1064)
T KOG1144|consen 219 MQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEE----AALA 294 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHH----HHHH
Confidence 33344444444 4456778888899999999999999999999999999999999998888 9999999987 7888
Q ss_pred HHHHHHHHHHH
Q 000570 588 EARRLEAMRNQ 598 (1415)
Q Consensus 588 e~~~~~~~~~~ 598 (1415)
++++++++..+
T Consensus 295 ea~l~~ll~sg 305 (1064)
T KOG1144|consen 295 EAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHhcC
Confidence 88888888766
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=188.43 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=131.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F---- 901 (1415)
.|+|+|++|+|||||+++|++.++.. ....++|++.-..... .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 58999999999999999999877542 3334445432111110 11235899999996432
Q ss_pred ----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 902 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 902 ----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
......++..+|++|||||+.++.... ..++..+...+.|+|+|+||+|++. ... +
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~----~--------- 125 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDK----L--------- 125 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHH----H---------
Confidence 112345678899999999999876654 4556777778899999999999862 000 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH---------------------H
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ---------------------K 1036 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~---------------------~ 1036 (1415)
......+... ....++||+||++|.||++|+.+|..+++ +
T Consensus 126 ------~~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 126 ------LPLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred ------HHHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 0011111110 11237999999999999999999987653 2
Q ss_pred HHHHhhh--ccc--ccc-eEEEEEEEE-cCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhh
Q 000570 1037 TMVEKLT--FRN--ELQ-CTVLEVKVI-EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1095 (1415)
Q Consensus 1037 ~l~e~l~--~~~--~~~-~~VlEvk~~-~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ 1095 (1415)
.+.+++. ... |.. ...++.+.. ++....+.+.|+ +=+.++.-+|+|.+|..+.+|..
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i~~ 249 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAIGI 249 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHHHH
Confidence 2333331 122 211 222222222 222333555555 44777888888988876655543
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=195.51 Aligned_cols=217 Identities=25% Similarity=0.315 Sum_probs=138.4
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
-+...|+|+|++|+|||||+++|++..+.. ....+.|.+.....+ .+....|.||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~----------------~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGII----------------TLKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEE----------------EeCCeEEEEEECCCcCCC
Confidence 355679999999999999999999876642 122233332211111 12234589999999743
Q ss_pred hhhH-------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 901 FTNL-------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 901 F~~l-------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
|..+ ....+..||++|||||+..++...+..++..++..+.|+|+|+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 3221 12347789999999999998888877788888888889999999999852 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH------------------
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~------------------ 1035 (1415)
+..+...+... ....++||+||++|.||.+|+.+|..+++
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 11122222211 12357999999999999999999987643
Q ss_pred ---HHHHHhhhc--cc--ccc--eEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhh
Q 000570 1036 ---KTMVEKLTF--RN--ELQ--CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096 (1415)
Q Consensus 1036 ---~~l~e~l~~--~~--~~~--~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~l 1096 (1415)
+.+.+++.. .. |.. ..|.......+....+.+.|+ +=+.++.-+|+|.+|..+.+|...
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~~~ 302 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIGAK 302 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHHHH
Confidence 233333321 22 222 222222222222234666665 558888888899988776666543
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=187.85 Aligned_cols=217 Identities=23% Similarity=0.318 Sum_probs=136.9
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccc-ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.+|+.+|+|+|++|+|||||+++|++..+... ...++|.+... .+. ......++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-------------~i~---~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-------------GIV---TEDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-------------EEE---EcCCceEEEEECCCCCC
Confidence 35788899999999999999999998765421 11222211100 000 01124699999999654
Q ss_pred h--------hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 F--------~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
. ......++..+|++|||+|+.++++.....++..+...++|+|+|+||+|++.. ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-----~~---------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-----KE---------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-----HH----------
Confidence 3 233445678899999999999988888888888888778999999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH-----------------
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ----------------- 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~----------------- 1035 (1415)
.+..++..+... ....++|++||++|.|+.+|+.+|..+++
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011122222221 12458999999999999999999887652
Q ss_pred ----HHHHHhhh----cccccce-EEEEEEEEcCcce-EEEEEEEeeEEccCCEEEEeccCCcceeehhh
Q 000570 1036 ----KTMVEKLT----FRNELQC-TVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1095 (1415)
Q Consensus 1036 ----~~l~e~l~----~~~~~~~-~VlEvk~~~G~Gt-vi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ 1095 (1415)
..+.+++. ..-|... ..++.+... |. .+.+.|+ +-+.++.-+|+|.+|..+.+|+.
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHHH
Confidence 11222221 1112121 222222222 33 2555444 44777888888988876665554
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=171.43 Aligned_cols=147 Identities=25% Similarity=0.309 Sum_probs=106.2
Q ss_pred eEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh----
Q 000570 829 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 903 (1415)
Q Consensus 829 ~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~---- 903 (1415)
+|+|++|+|||||+++|.+.+.. .....++|+......+. +....+.|||||||..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE----------------WGGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE----------------ECCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999976532 22233444433222221 1224589999999988654
Q ss_pred ----HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 ----lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.....+..+|++|+|+|+.+++...+..++.+++..++|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~--------------- 122 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-------ED--------------- 122 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh-------HH---------------
Confidence 3445678899999999999998888888888888889999999999999631 10
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
....+...+ ..+++++||++|.||.+|+.+|+..
T Consensus 123 ------~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 123 ------EAAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------HHHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 011122211 1268999999999999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=195.52 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=116.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
..+.|+|+|++++|||||+++|++... ......|+|.+.....+.+ ....++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~----------------~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER----------------NGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE----------------CCcEEEEEECCCccccc
Confidence 345699999999999999999997653 2344566665543333222 22358999999975543
Q ss_pred ----------hHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 903 ----------NLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 903 ----------~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.++ .+++..||++|||||+.+|++.++..++.++...++|+|||+||+|++.. ..
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-----~~--------- 300 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD-----EK--------- 300 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC-----HH---------
Confidence 222 34678899999999999999999999999999999999999999999610 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.+..+...+... +. +-..+|++++||++|.||.+|+.++..++.
T Consensus 301 ----------~~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 301 ----------TREEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ----------HHHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011111222111 10 013479999999999999999999887664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=174.78 Aligned_cols=147 Identities=24% Similarity=0.310 Sum_probs=103.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
.|+++|.+|+|||||+|+|++.....+..+|+|.+.....+.+.. ..+.||||||..++...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 489999999999999999999998888999999877555544322 35999999996554321
Q ss_pred ----Hhhc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 905 ----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 905 ----r~rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.... ...+|++|+|+|+.+ ..+....+.++..+++|+|+|+||+|..... ...+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 1222 357999999999988 3556667778888999999999999986210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
....+...| .+|+||+||.+|.|+.+|+..|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 011111111 2699999999999999998764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=200.52 Aligned_cols=117 Identities=34% Similarity=0.509 Sum_probs=98.4
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeceeEecccccceeeeecccc
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~~~~~i~~~t~~v~~~ 882 (1415)
....+|| |||+.|||||||||.|.|+..+. .+..++|||...++.+.-.
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~------------- 69 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH------------- 69 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-------------
Confidence 3467888 99999999999999999985542 1223567776666554221
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....|+|||+|||.+|......+++.||+++++||+..|+.+||...++++...+...|+||||||++
T Consensus 70 ---~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 70 ---KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred ---CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 23459999999999999999999999999999999999999999999999999999999999999975
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=168.52 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=105.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......+...+....+... .....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE--------------GKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC--------------CEEEEEEEEeCCCchhhhhhhH
Confidence 48999999999999999999876654332222222221111111 1113488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..+..+|++|||+|+.++...+... ++..++.. ++|+|||+||+|+.. .. .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~~------------~------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------SV------------T------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------hH------------H-------
Confidence 9999999999999998865544433 34445443 689999999999841 00 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... .+... ..++++++||++|.||.+++..++..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999887654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=193.64 Aligned_cols=160 Identities=23% Similarity=0.333 Sum_probs=115.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.+.|+|+|++|+|||||+++|++.. +..+...|+|.+.....+.+ ....++||||||+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~----------------~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER----------------DGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE----------------CCeeEEEEECCCCCCCcc
Confidence 4669999999999999999999765 33455667776654333322 224589999999643
Q ss_pred -------hhhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 -------F~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..++ .+++..||++|||||+..|++.|+..++.++...++|+|||+||+|+.. ...
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-------~~~-------- 301 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKT-------- 301 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-------HHH--------
Confidence 33233 3577889999999999999999999999999999999999999999862 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+. ..+...|.. ...+|++++||++|.||.+|+..+..++.
T Consensus 302 ---~~~~~---~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 302 ---MEEFK---KELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ---HHHHH---HHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111 111111111 13479999999999999999998877654
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=172.39 Aligned_cols=150 Identities=23% Similarity=0.347 Sum_probs=104.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc--cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
..+.+.|+|+|++|+|||||+++|++..+ ......|.|+++..+..+ ..+.||||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-------------------CcEEEEeCCCCc
Confidence 35677899999999999999999998752 223344555554322211 258999999963
Q ss_pred ----------chhhHHhhc---cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 900 ----------SFTNLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 900 ----------~F~~lr~rg---l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
.|..+.... ...+|++|+|+|+.+++..++..+++++...++|+||++||+|+... .++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~-- 147 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SEL-- 147 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHH--
Confidence 344443323 34578999999999999999999999998899999999999998621 111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
...+..+...|... +..+++|++||++|+||.
T Consensus 148 -------------~~~~~~i~~~l~~~-------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 148 -------------NKQLKKIKKALKKD-------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -------------HHHHHHHHHHHhhc-------------cCCCceEEEECCCCCCCC
Confidence 11222333333322 123589999999999983
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=168.75 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=96.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~--- 902 (1415)
|+|+|+|++|+|||||+++|++..+......+.|..+....+. +....++||||||+..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----------------YKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc----------------cCceEEEEEECCCcCCccccC
Confidence 6799999999999999999998765433333333322211111 122469999999985321
Q ss_pred -------hHHhhccCcccceEEEEeccCCCC---hhHHHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 903 -------NLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 903 -------~lr~rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
.+. .....+|++|||+|+.+... .....++..++.. ++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~------- 130 (168)
T cd01897 65 RNTIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------ED------- 130 (168)
T ss_pred CchHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hh-------
Confidence 111 11234689999999987432 2223455556554 7999999999999621 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+.. ...+... ..++++++||++|.||.+|+.+|...
T Consensus 131 ------------~~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 131 ------------LSE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HHH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 000 1111111 23589999999999999999988754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-17 Score=191.09 Aligned_cols=152 Identities=25% Similarity=0.379 Sum_probs=120.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh--
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~-- 902 (1415)
|+|+|+|.+|+|||||+|+|+++..+ .....|+|.+.-..... |....+.+|||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~----------------~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAE----------------WLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeE----------------EcCceEEEEECCCCCcCCch
Confidence 88999999999999999999998765 34567777765433332 334569999999976432
Q ss_pred ---hH----HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 903 ---NL----RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 903 ---~l----r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
.. ...++..||++|||||+..|++++..+...+|+..+.|+|+|+||+|-...
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-------------------- 127 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-------------------- 127 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--------------------
Confidence 22 345677899999999999999999999999999888999999999997421
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
......|...||. .++||||.+|.||.+|++.++.+++
T Consensus 128 --------e~~~~efyslG~g--------------~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 128 --------EELAYEFYSLGFG--------------EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --------hhhHHHHHhcCCC--------------CceEeehhhccCHHHHHHHHHhhcC
Confidence 2233456666543 6899999999999999999988764
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=165.67 Aligned_cols=160 Identities=20% Similarity=0.291 Sum_probs=107.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch--
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 901 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-- 901 (1415)
.+.|+|+|++|+|||||+++|++..+. .....++|.......+. +....++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE----------------YDGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE----------------ECCeeEEEEECCCCccccc
Confidence 456999999999999999999876532 22233333332211111 12345899999997543
Q ss_pred --------hhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 902 --------TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 902 --------~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
..++ ...+..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 2122 235678999999999999988888888888888889999999999996310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+..+...+... +. ....+++|++||++|.||..++..+..+
T Consensus 132 ---------~~~~~~~~~~~~-~~---------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LP---------FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-cc---------cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111122111 10 0123689999999999999999887653
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-17 Score=169.20 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=97.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc-ccc---cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ-EGE---AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~-~ge---agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|+|||+.|+|||||+++|.+.... .+. ....|..+....+ .+....+.|||||||..|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~l~Dt~G~~~~~~ 65 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI----------------EVGNARLKFWDLGGQESLRS 65 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE----------------EECCEEEEEEECCCChhhHH
Confidence 899999999999999999753221 000 0001111111111 12234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|||||+.+.-. ......+..+. ..++|+||++||+|+...+ ..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~-------------- 125 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV-------------- 125 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH--------------
Confidence 99999999999999999976321 11222222222 2479999999999985311 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+...+.... . . .....++++++||++|.||.+++.+|.
T Consensus 126 -----~~~~~~~~~~~-~-~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -----EEIKEVFQDKA-E-E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -----HHHHHHhcccc-c-c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 01111111100 0 0 001347999999999999999998875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-17 Score=171.61 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=100.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|++++|||||+++|.+..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 45669999999999999999998764321 222223111100 01123589999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCCh-hHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~-QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|||+|+.+.-.. .....+..+ ...++|+|||+||+|+.... .
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------S--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------C---------------
Confidence 988899999999999999875211 112222222 22578999999999986210 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+....+. ...+++|++||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111112111111 1347999999999999999998875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=167.89 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=102.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.|+|||||+++|++..+.......++.++....+.+.. ....++|||||||..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG--------------KRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHH
Confidence 4599999999999999999987665433222222222211222111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+++....+.... +..+. ..++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----~~~------------------ 127 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR----EVL------------------ 127 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----ccC------------------
Confidence 999999999999999988544333222 23332 2468999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+....... +..+++++||++|.||.+++.+|..
T Consensus 128 -~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 128 -FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred -HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 00111111111 2247899999999999999998875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=165.66 Aligned_cols=147 Identities=26% Similarity=0.308 Sum_probs=102.3
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-----
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL----- 904 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l----- 904 (1415)
|+|++|+|||||+++|++..+..+...|+|.+.....+.+. ...+.||||||+..|..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 68999999999999999876555566666665543333222 235899999999887653
Q ss_pred -Hhhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 -RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 -r~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+...+ ..+|++|+|+|+.+. .+....+..+...++|+|+|+||+|+... ..+. .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~---------------~ 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIK---------------I 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccch---------------h
Confidence 44444 489999999999873 33344556667788999999999999631 0000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ ..+... ..++++++||.+|.|+..|+.+|..+
T Consensus 122 ~~----~~~~~~--------------~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 DL----DKLSEL--------------LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hH----HHHHHh--------------hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 01489999999999999999888764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=164.76 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=108.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+......+++.+.....+.+... ...++||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK--------------TVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999998877666666665554433332211 01389999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHH-Hhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL-KMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~ll-k~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.++-+.+.... +..+ ... ++|+|+|+||+|+... .....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 99999999999999987544333333 2333 233 4899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.....+... ..++++++||.+|.||.+|+.+|...
T Consensus 126 --~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 --EEGEKKAKE--------------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred --HHHHHHHHH--------------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 001111110 12589999999999999999998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-16 Score=190.68 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=114.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH---- 898 (1415)
+.+.|+|+|++++|||||+++|++..+. .....|+|.+.....+.+ .+..+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~----------------~~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL----------------GGKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE----------------CCEEEEEEECCCccccc
Confidence 4567999999999999999999987642 344566665543322222 2234789999994
Q ss_pred ------cchhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 899 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 899 ------e~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.|..++. ..+..+|++|||+|+.+++..+....+..+...++|+|||+||+|+... .....
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~---- 342 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYY---- 342 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHH----
Confidence 44555543 3568899999999999999999999998888889999999999999621 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+. ..+...+.. ...+|+++|||++|.||.+|+..|..++.
T Consensus 343 -------~~---~~i~~~l~~--------------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 343 -------LE---REIDRELAQ--------------VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -------HH---HHHHHhccc--------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 111111111 12368999999999999999999887664
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=164.18 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=100.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|.+++|||||+++|++..+.....+.+...+ ...+.+. .....+.|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID--------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC--------------CEEEEEEEEECCCCcchhHHH
Confidence 3599999999999999999987655332222211110 1111110 111248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|+.+....+... ++..+ ...++|+|||+||+|+...+. ..
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK----VS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce----ec-----------------
Confidence 99999999999999998743222211 12222 224789999999999863110 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||++|.||.+++..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 24899999999999999999987654
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=164.25 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=106.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......++.......+.... ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998776554444444333322222211 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-H---HHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.++...+....| . .+...++|++||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986554443333 2 233457899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... + ++++.+||++|.||.+++.+++.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111112111 1 58999999999999999998864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=163.90 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=104.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 489999999999999999998776543333332222111111111 012478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH--HHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~--llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..++.||++|+|+|+.++...+....|. ++.. .++|+|||+||+|+... ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~-------------- 128 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVS-------------- 128 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccC--------------
Confidence 9999999999999998754322222221 1222 26899999999999620 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+... +.++++++||.+|.|+..++.+|...+.
T Consensus 129 ----~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 129 ----TKKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ----HHHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 2368999999999999999999876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=168.61 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
+..|+|+|+.|+|||||+++|.+..+... ...++..+....+.+. ......|.||||||++.|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 45699999999999999999987654321 1111111111111100 111235899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHH-----HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~-----E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..||++|||+|+.+.-..... +++......++|+|||+||+|+...+ +
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~---------------- 126 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------S---------------- 126 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------C----------------
Confidence 99889999999999999874222111 11122233578999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+....+. ....++++++||++|.||.+|+.+|+..+.
T Consensus 127 ---~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 127 ---VSEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---HHHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 00111111000010 012367999999999999999999886654
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=164.89 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=95.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCC-CCEEEEeCCCCcc-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES----- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~-~~l~iIDTPGHe~----- 900 (1415)
.|+|||++|+|||||+++|.+.....+...+.|.......+. +.. ..++||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~----------------~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR----------------VDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE----------------cCCCCeEEEEecCcccCccccc
Confidence 389999999999999999987654333323333222111111 111 2699999999742
Q ss_pred --hhhHHhhccCcccceEEEEeccCC-CChhHHHH-HHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~-l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.....+.+..||++|+|+|+.++ -..+.... +..+.. .++|+|||+||+|+... ..+
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~------- 132 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EEL------- 132 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhh-------
Confidence 222333455679999999999986 23333332 233332 36899999999998631 110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+..+.... ..++++++||++|.||.+|+.+|..+
T Consensus 133 ------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 ------------FELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ------------HHHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 01111111110 13579999999999999999988754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=164.56 Aligned_cols=151 Identities=27% Similarity=0.272 Sum_probs=98.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+++|+...+... .+ .++..... ..+....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~----t~~~~~~~--------------~~~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IP----TIGFNVET--------------VTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CC----ccCcCeEE--------------EEECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976544321 11 11111100 0112235899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..||++|||+|+.+..... ....|. ++.. .++|+|||+||+|+...+ .
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~------------------- 117 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------S------------------- 117 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------C-------------------
Confidence 999999999999988732211 223332 3332 368999999999986311 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+ ++.. + ....+++++|||++|.||.+|+.+|++
T Consensus 118 ~~~i~~~~---~~~~---~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKL---GLSE---L----KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHh---Cccc---c----CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 01111111 1110 0 012358999999999999999998863
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=163.94 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=104.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|+.|+|||||+++|....+..+...+++.+.....+.+.. ....+.|||||||..|..++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~ 73 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG--------------EKIKLQIWDTAGQERFRSIT 73 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHH
Confidence 5599999999999999999987666544333333322111111111 00247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|+|+|+.++...+....| ..+...++|+|+++||+|+... ..+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~---------------- 131 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVS---------------- 131 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccC----------------
Confidence 9999999999999999875443332222 3333346899999999998531 1110
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+... ..++++++||++|.|+.+++.+|...
T Consensus 132 --~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 132 --QQRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred --HHHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0111112111 12579999999999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=161.80 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=99.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|.+..+.....+.+.... ...+.... ....+.||||||++.|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHHH
Confidence 489999999999999999998765433222221110 11111110 012378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|+|+|+.+....+... ++..+. ..++|+|||+||+|+... ...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~------------------ 124 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS------------------ 124 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec------------------
Confidence 9999999999999998743222222 122222 247899999999998621 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+....... .++++++||++|.||.+++.+|+..
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 -SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred -HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111111 2489999999999999999988753
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=160.89 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||++++|||||+++|++..+.......++.++....+.+.. ....|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG--------------KRVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 489999999999999999998876554444444443333222211 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..||++|||+|+.+....+....| ..+.. .++|+|||+||+|+...+. .+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~------------------ 125 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSR------------------ 125 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCH------------------
Confidence 999999999999999885444333322 23222 4689999999999863110 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+....... .++++++||.+|.|+.+++.+|...+
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 126 -EEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -HHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 25799999999999999999988654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=163.01 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=98.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+++|++...... .++..+|.....+ .+....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~--------------~~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESF--------------EKGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEE--------------EECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 1222222111100 011235899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHHHH-H-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|+.++.... ....+..+ . ..++|+|||+||+|+... ..
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 121 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LT----------------- 121 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CC-----------------
Confidence 999999999999998854321 12222222 1 246899999999998521 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ ++.. . ....++++++||++|.||.+++.+|.
T Consensus 122 --~~~~~~~l---~~~~--~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 122 --AVKITQLL---GLEN--I-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred --HHHHHHHh---CCcc--c-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 00111111 1110 0 01235799999999999999999875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=192.15 Aligned_cols=152 Identities=24% Similarity=0.320 Sum_probs=111.9
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|+|++|+|||||+++|++..+. .....|+|.+.-...+.+ ....+.||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----------------NGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----------------CCcEEEEEeCCCcCCcch
Confidence 367999999999999999999987543 345667776643333222 223589999999763
Q ss_pred -----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 901 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 901 -----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|...+..++..||++|||||+.+|++.....++.+++..++|+|+|+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-------~~----------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-------EA----------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-------ch-----------
Confidence 4444556788899999999999999888888888888889999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. ...+...|+. .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~~--------------~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGLG--------------EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCCC--------------CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 0112222321 246999999999999999987654
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-16 Score=162.61 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=102.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.....++++.++....+.... ......++||||||++.|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ------------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC------------CCCEEEEEEeeCCchHHHHHhHH
Confidence 489999999999999999998766544444443333211111110 00112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH-HHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..++.+|++|||+|+.+....+....|. .+. ..++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 9999999999999998743333333322 222 237899999999998631 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+ ..+... ..++++++||++|.|+.+|+.+|..
T Consensus 127 ~~~-~~~~~~--------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEA-EALAKR--------------LQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHH-HHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 001 111111 0148999999999999999988764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=190.88 Aligned_cols=150 Identities=25% Similarity=0.328 Sum_probs=113.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe------ 899 (1415)
+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+. ...++||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 4899999999999999999987643 3345667765543333322 2359999999973
Q ss_pred --chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 900 --SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 900 --~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.|...+..++..+|++|||||+..|+.+...+++.+++..++|+|+|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~-----~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED-----A--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc-----c---------------
Confidence 345556678889999999999999999999999999999999999999999986310 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
....+...|+ .+++++||.+|.||.+|+..+...+
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 0111222222 2689999999999999999887544
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=165.90 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=104.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+......++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 489999999999999999998766543333333222221221110 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH-------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..+..+|++|||+|+.+...-+....| ..+. ..++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~--------------- 129 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AKD--------------- 129 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----ccC---------------
Confidence 999999999999999873222222211 1221 2468999999999995210 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
...+.......+ .++++++||++|.||.+++.+|+..+..
T Consensus 130 ----~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 130 ----GEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ----HHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 011111222221 2479999999999999999999876543
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-16 Score=161.11 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=103.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.+++...+.... ....++||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN--------------KEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC--------------eEEEEEEEECCccHHHHHHHH
Confidence 489999999999999999998776554444444333322222211 112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh--------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
..+..+|++|||+|+.+....+....| ..+.. .+.|+|+|+||+|+.... ...
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999874332222222 22211 358999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
........... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00011111111 1579999999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=169.98 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=116.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.. ... .+|..+.... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999877642 111 2222211110 1112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhH-HHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPI-VKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~-~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+.-....+. .|..+.. .++|+|||.||+|+...|....+..- ...+..... ...
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~---r~v-- 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQ---RQV-- 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccccccccccc---ccC--
Confidence 9999999999999998843322222 2222222 35899999999999753321100000 000000000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEE
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1052 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~V 1052 (1415)
..........+.+ ....+|.+-.....+++|+|||++|.||.+++..++..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~-~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRIN-KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhC-ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 0001111111111 001122222223347899999999999999999998877666665544433334443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=162.10 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=100.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|.+..+.....++++ +.....+... .....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--------------~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEID--------------GEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEEC--------------CEEEEEEEEECCCcccchHHHH
Confidence 489999999999999999997765443322221 1100100000 0112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+.+.-.......| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999873322222221 112 22368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... ..++++++||++|.||.+|+.+|+..+
T Consensus 125 --~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 125 --TEEGKELARQ--------------WGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHH--------------cCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 0001111111 015899999999999999999987654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=168.18 Aligned_cols=158 Identities=26% Similarity=0.339 Sum_probs=104.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH----- 898 (1415)
+.+.|+|+|++|+|||||+++|++..+..+...|+|.+...+. ...++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--------------------~~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--------------------WGDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--------------------ecceEEEeCCccccccc
Confidence 4567999999999999999999987765555556554422110 114899999995
Q ss_pred ------cchhhHHh----hccCcccceEEEEeccCC-----------CChhHHHHHHHHHhcCCceEEEEEecccccCCc
Q 000570 899 ------ESFTNLRS----RGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 957 (1415)
Q Consensus 899 ------e~F~~lr~----rgl~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~ 957 (1415)
+.|..++. +++..++++|+|+|+... ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 33433322 245668999999998642 2345667778887889999999999998521
Q ss_pred cCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. . ..+..+...+ ++.. .|. .+ ..++|+|||++| ||.+|+.+|...+
T Consensus 146 -----~-~---------------~~~~~~~~~~---~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 146 -----R-D---------------EVLDEIAERL---GLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----H-H---------------HHHHHHHHHh---cCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0 0 0011111111 2110 010 01 247999999999 9999999987654
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=166.47 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.+.|+|+|+.|+|||||+.++.+..+.......+ +..+. ....+ +.....+.||||||+..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~~~~-------~~~~~----~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----EDSYR-------KQCVI----DEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hhEEE-------EEEEE----CCEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876543222221 11110 00000 011124889999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..+|++|||+|+.+...-.... ++..+. ..++|+|||+||+|+...+ .+.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------~i~-------------- 129 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER------QVS-------------- 129 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------ccC--------------
Confidence 999999999999999998743322222 222222 2378999999999985311 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1039 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~ 1039 (1415)
........... .++++++||++|.||.+++.+|+..+...+.
T Consensus 130 ---~~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 130 ---TGEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ---HHHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00000011111 1589999999999999999999877655443
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-16 Score=160.82 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 3589999999999999999998776542222211111111111111 11248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+.-. .+...++..+.. .++|+||++||+|+.... ..+
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~------------------ 125 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR----QVS------------------ 125 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC----cCC------------------
Confidence 888999999999999986422 122233333333 358999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++++||++|.|+.+++.+|+..+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 126 -TEEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 00111111111 15799999999999999999987653
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=162.19 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=103.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|++..+.......++.++....+.... ....+.||||||+..|..++.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 71 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG--------------KQIKLQIWDTAGQESFRSITR 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 599999999999999999998766544333333332222221111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
+.+..+|++|||+|+++...-+.... +..++. .++|+|||+||+|+... ...+.
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~------------------ 129 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVSY------------------ 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCCH------------------
Confidence 99999999999999986433333222 223333 36899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+...+... .++++++||++|.||.+++.++...+
T Consensus 130 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 130 -EEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24799999999999999998887543
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=157.36 Aligned_cols=157 Identities=27% Similarity=0.370 Sum_probs=105.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccccccc-CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~gea-gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+..+|+|+|++|+|||||+++|++..+..... ...|.......+ ......+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY----------------TDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE----------------EcCCeEEEEEECCCCCcch
Confidence 45679999999999999999999765432211 111111000000 0112358999999976543
Q ss_pred --------hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 903 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 903 --------~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
......+..+|++++|+|+.+.........+..+...+.|++|++||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~------------ 127 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------K------------ 127 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------H------------
Confidence 23445678899999999999986666777777787788999999999998621 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+..+...+... ...++++++|+++|.|+.+|+..|.+.
T Consensus 128 ------~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 128 ------EDLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ------HHHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 0111222222221 123589999999999999999988653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=178.11 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=121.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC-----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 897 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----- 897 (1415)
.+..|+|+|.+++|||||+|+|++.. +..+...|+|.+.-...+. +++..+.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------RDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------ECCeEEEEEECCCCCccc
Confidence 34559999999999999999999764 4456667788775444443 3345699999999
Q ss_pred -----CcchhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 898 -----HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 898 -----He~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
++.|+.++. ..+..+|+++||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 455665554 56778999999999999999999999999999999999999999997420 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
....+.. .+...|.- -.+.|+|++||++|.||..|+..+.....
T Consensus 308 ---~~~~~k~---~i~~~l~~--------------l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 ---TMEEFKK---KLRRKLPF--------------LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ---HHHHHHH---HHHHHhcc--------------ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 1111211 12222211 24569999999999999999998876543
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=157.64 Aligned_cols=151 Identities=22% Similarity=0.271 Sum_probs=99.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|++|+|||||+++|.+..+......++|.++....+..... ...+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK--------------TYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE--------------EEEEEEEECCCcccchHHH
Confidence 45999999999999999999988765555566666655443332210 0248899999999997766
Q ss_pred hhccCcccceEEEEe-------ccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 906 SRGSGLCDIAILVVD-------IMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 906 ~rgl~~aDiaILVVD-------a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
......++.+|+++| +.++...+....+.++.. ++|+||++||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 555555555555544 444444444444444443 8899999999999621 010
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 0111112111 22479999999999999998876
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-16 Score=161.82 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=98.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|.+|+|||||+++|.+..+... ..++...+ ..+.. .....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~---------------~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL---------------EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe---------------CCceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765421 11111111 00000 01135999999999999999988
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHH-HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+..... ....+. +++ ..++|+|||+||+|+...+ .
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 899999999999998753211 111222 222 2578999999999985211 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+....+. ....++++++||++|.||.+++.+|..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 01111111111111 012468999999999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=162.06 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=103.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|.+++|||||+++|.+..+......+++.+.....+.+.. ....|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG--------------KKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4599999999999999999998776543333332222111111111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|||+|+.++..-+.... +..+.. .++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~----~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR----VVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----CCC------------------
Confidence 989999999999999987433222222 222222 468999999999996310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||.+|.||.+++.+|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999887643
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=166.77 Aligned_cols=157 Identities=21% Similarity=0.228 Sum_probs=106.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.++....+......+++.++....+.+.. ....|.||||||++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~--------------~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRG--------------KKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCchhhHHHHH
Confidence 389999999999999999998777654444443333222222211 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+....| ..+.. .++|+|||.||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 999999999999999984443333322 33332 358999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... + ..++++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0001112111 0 125799999999999999999987644
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-16 Score=158.58 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=101.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|.+..+......++...+. .+. +....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~----------------~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVT----------------KGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEE----------------ECCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999987654333222221111 000 11134899999999999999999
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+... .+....+..+. ..++|++|++||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999976322 22223333332 247899999999998521 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...+ ++.. .....++++++||++|.||..++.+|..
T Consensus 120 -~~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DELIEQM---NLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHHHHHh---Cccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 0111111 1110 0123478999999999999999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=161.16 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|+...+.......+..++....+... .....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN--------------RGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCCChhhccccH
Confidence 48999999999999999998665543332222222221111111 1112489999999999999988
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
..+..+|++|||+|+.++..-+....| ..+... ++|+|||+||+|+... ...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-----~~~-------------------- 122 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-----KVK-------------------- 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-----cCC--------------------
Confidence 889999999999999875443333322 333222 6999999999998510 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... .+... ..++++++||++|.||.+++.+|+..+
T Consensus 123 ~~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 123 AKQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 0000 11111 236899999999999999999987544
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=160.04 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=102.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|.+..+......+++.++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG--------------KTIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEECCCcHhHHHHHH
Confidence 489999999999999999998766544334433322211111111 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-.. ..++..+.. .++|+||++||+|+.... ....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~------------------ 127 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR----VVDY------------------ 127 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc----CCCH------------------
Confidence 99999999999999987322111 122232322 358999999999985310 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+. .+... ..++++++||++|.||.+++..|...+
T Consensus 128 -~~~~-~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 128 -SEAQ-EFADE--------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -HHHH-HHHHH--------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 0011 11110 125899999999999999999887644
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=158.90 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=99.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|.+|+|||||+++|....+.....+.+...+ ...+... .....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVD--------------GQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEEC--------------CEEEEEEEEECCCccccchHH
Confidence 4599999999999999999997655432222211000 0001000 011247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...++.+|++|||+|+.+....... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 9999999999999999873222211 12222322 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.. .++ ++++++||++|.||.+|+.+|+..
T Consensus 126 ---~~~~~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 ---REEGQALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ---HHHHHHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 000111111 011 689999999999999999988753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-16 Score=160.05 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=99.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+... +..++.....+ .+....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETV--------------EYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEE--------------EECCEEEEEEECCCChhhHHHHHH
Confidence 89999999999999999997763211 11111111000 011235999999999999999998
Q ss_pred ccCcccceEEEEeccCCC-ChhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|+|+|+..+- .......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 899999999999998742 12222333222 2357899999999998631 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111211100 123579999999999999999988753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=160.82 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=100.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|++..+.......+ +.++... + ........|.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----~~~~~~~---------~--~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQV---------I--SCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc----hheEEEE---------E--EECCEEEEEEEEECCCCCcchHHHH
Confidence 48999999999999999999876643322221 1111100 0 0001123489999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|||+|+.+...... ..++..++. .++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------- 128 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------- 128 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH-------------
Confidence 88999999999999988543322 223333332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
... ..+.. . ..++++++||++|.||.+++.+|+.+
T Consensus 129 ----~~~-~~~~~-~-------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 ----NEG-AACAT-E-------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ----HHH-HHHHH-H-------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 000 00110 0 12578999999999999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=162.80 Aligned_cols=152 Identities=26% Similarity=0.263 Sum_probs=99.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|....+.. . ...++..+... .+....+.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-T----SPTIGSNVEEI--------------VYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEE--------------EECCeEEEEEECCCCHHHHHHH
Confidence 359999999999999999998655432 1 12222211110 1112359999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChh-HHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQ-TIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..||++|||+|+.+..... ....| .++.. .++|+||++||+|+...+ +.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~---------------- 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TP---------------- 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CH----------------
Confidence 99999999999999998742211 12222 23322 358999999999985210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+...+....+. ...++++++||++|.||.+++.+|.
T Consensus 135 ---~~i~~~l~~~~~~----------~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 135 ---AEISESLGLTSIR----------DHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ---HHHHHHhCccccc----------CCceEEEecccCCCCCHHHHHHHHh
Confidence 1111122110000 1236899999999999999999885
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=158.61 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=100.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.......++.+.....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999997765432222222111111111110 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 899999999999999874433333222 222 2356899999999999621 1000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...... ..++++++||++|.||.+++..++.
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHH
Confidence 011111111 1258999999999999999988765
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=186.30 Aligned_cols=149 Identities=27% Similarity=0.339 Sum_probs=110.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+ .+..+.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~----------------~~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW----------------LGREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE----------------CCcEEEEEECCCCCCcchh
Confidence 67999999999999999999987642 344556665543333222 224599999999987
Q ss_pred h----hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 901 F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 901 F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
| ......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+...+
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-------------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-------------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------------------
Confidence 2 3334556788999999999999999988888899999999999999999974200
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.....+...|+ ..++++||.+|.||.+|+..|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00111222221 14789999999999999988865
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=159.41 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=104.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+.......+..++... +.... .....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 489999999999999999998766543333332222111 10000 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+++....+... ++..+. ..++|+|||+||+|+..... ... .+.
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~---~v~------------- 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN---LDR---KVT------------- 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc---ccC---CcC-------------
Confidence 9999999999999998744333322 222222 23689999999999853100 000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
...........+ ..++|++||++|.||.+++..|+..+...
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 001111111111 23789999999999999999988766443
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=158.70 Aligned_cols=155 Identities=20% Similarity=0.182 Sum_probs=100.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|.+..+.......+..++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999987765433222222222111111110 112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++...-+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------~~~~----------------- 126 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ------RDVT----------------- 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCcC-----------------
Confidence 999999999999999874332322222 2222 245799999999999631 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...... ..++++++||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 YEEAKQFADE---------------NGLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999887653
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=164.52 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=103.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+.+.|+|+|+.|+|||||+++|.+..+.. ... |.......+. +....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~--T~~~~~~~i~----------------~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP--TLHPTSEELT----------------IGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccCcceEEEE----------------ECCEEEEEEECCCCHHHH
Confidence 356779999999999999999998765421 111 1111111111 112348899999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCC-hhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..+|++|||+|+.+.-. ......+..+. ..++|+||++||+|+.. ....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCH------------
Confidence 888888899999999999976321 11222332222 35689999999999852 1000
Q ss_pred HHHHHHHHHHHHHHHcCCch-hhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNT-ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~-e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+....+.. ............++++++||++|+||.+++.+|.++
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11111221110000 000000011234689999999999999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=161.65 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=104.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc--cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v--~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
+.|.|+|+|++|+|||||+++|++..+ ......|.|+.+..+.+ ...|.||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 345599999999999999999997542 12223344444322211 1359999999963
Q ss_pred --------chhhHHhhcc---CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 900 --------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 900 --------~F~~lr~rgl---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.|..+....+ ..++++++|+|+..+....+..++.++...++|+++++||+|+..++ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~~---- 153 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------ER---- 153 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------HH----
Confidence 3444444333 34578889999998888877777778888899999999999996321 00
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+...+... .++++|+||++|.|+.+++..|..++
T Consensus 154 -----------~~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 154 -----------KKQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -----------HHHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 00011111112111 25889999999999999999887654
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=158.68 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=100.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+++|++..+.......++.+.....+.+.. ....|.||||||++.|..++.
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~ 72 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLRT 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhHH
Confidence 499999999999999999997766543322222221111111110 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH-H------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..+..+|++|||+|+++....+....| ..+ . ..++|+|||+||+|+.. +...
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~--------------- 132 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-----RQVS--------------- 132 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-----cccC---------------
Confidence 999999999999999875433333222 111 1 13589999999999851 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... +.++++++||++|.||.+++..++.
T Consensus 133 ----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 ----TEEAQAWCREN--------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred ----HHHHHHHHHHC--------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 01111111111 1247999999999999999998864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=161.67 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.+.|+|+|+.++|||||+.+|....+.. ...+ +|..+.... +....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t----~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPT----VGFNVETVT--------------YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCC----cccceEEEE--------------ECCEEEEEEECCCCHHHHHH
Confidence 3459999999999999999997654321 1111 121111000 11235999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...++.||++|||+|+.+... ......|. ++.. .++|+|||+||+|+...+ +
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 9888999999999999987321 11222332 3322 358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ ++.. .....++++++||++|.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1110 011335899999999999999998875
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=162.93 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=100.8
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..|+|||||+++|+...+.....+.+ +..+.. ...+. .....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~----~~~~~~-------~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTI----EDSYRK-------QVVVD----GQPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch----HhhEEE-------EEEEC----CEEEEEEEEECCCchhhHHHHHH
Confidence 8999999999999999999766543222221 111100 00000 00124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHH-HHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+++.+|++|||+|+.+........ ++..+.. .++|+|||+||+|+.... .+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~--------------- 125 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVS--------------- 125 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccC---------------
Confidence 999999999999998743322222 2233322 468999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.... ..+... + .+++|++||++|.||.+++.+|+..+.
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 126 --TEEG-AALARR------------L--GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred --HHHH-HHHHHH------------h--CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000 111110 1 147999999999999999999986554
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=155.47 Aligned_cols=144 Identities=26% Similarity=0.350 Sum_probs=101.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
.|+++|++|+|||||+++|++.... .+...|+|+.+....+.+ ....++||||||+..+...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI----------------GGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe----------------CCEEEEEEECCCcCCCcchH
Confidence 5899999999999999999976542 233445555433222221 1235899999998776432
Q ss_pred -------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 905 -------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 905 -------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
....+..+|++|+|+|+.+.........+.. ..+.|+|+|+||+|+...+ .
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~------~-------------- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS------E-------------- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc------c--------------
Confidence 3356678999999999998655554444433 4678999999999996311 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
. +. .....++|++||.+|.|+..|+.+|..+
T Consensus 125 --------~---~~--------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 125 --------L---LS--------------LLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --------c---cc--------------ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 0 00 0124689999999999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=158.48 Aligned_cols=156 Identities=19% Similarity=0.096 Sum_probs=100.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..|+|||||+++|+...+.....+++...+ ...+... .....+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD--------------GQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC--------------CEEEEEEEEECCCcccchhHH
Confidence 3589999999999999999986654332222221111 0011111 011247899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|..+....+.. .++..+. ..++|+|||+||+|+... ..+. .
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------~ 126 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------K 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc--------------H
Confidence 9999999999999998764322222 1222222 246899999999999631 0000 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...+... ..++++++||++|.||.+++.+|+..+
T Consensus 127 ---~~-~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 127 ---EQ-GQNLARQ--------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ---HH-HHHHHHH--------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00 0111110 015899999999999999999987543
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=159.97 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|+|..++|||||+.++....+.......+...+ ...+.+.. ....|+||||||...|..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDN--------------EPALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 34699999999999999999997766432222221111 00111110 0124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH-HHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+..++..+|++|||+|+.+....++...| ..+. ..++|+|||+||+|+...+ ..+.
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~~--------------- 127 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVTT--------------- 127 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccCH---------------
Confidence 99999999999999999986655554322 2222 2468999999999985211 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
... ..+... ..+++++|||++|.||.++|.+|+..+
T Consensus 128 ----~~~-~~~a~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 128 ----EEG-RNLARE--------------FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ----HHH-HHHHHH--------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 011110 125899999999999999999987543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=160.55 Aligned_cols=164 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+++|.+..+......+++.++....+.+..-. ............+.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSG----PGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcc----ccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 458999999999999999998876654444444333322222211100 0000000011348999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
...++.+|++|||+|+.+ +.+...+ ..+.. .+.|+|||+||+|+.... ...
T Consensus 81 ~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~v~-------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR----QVS-------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----ccC--------------
Confidence 999999999999999987 3433332 22322 368999999999986210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+ ..+... ..++++++||++|.||.+++..|+..+
T Consensus 140 -----~~~~-~~~~~~--------------~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 -----EEQA-KALADK--------------YGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -----HHHH-HHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011 111111 025899999999999999999987644
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=159.07 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
|...|+|+|+.|+|||||+++|+...+......+++.++....+.+.. ....+.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 345699999999999999999987665443333332222111111111 11248999999999997
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHH-HHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..+|++|||+|+.+....+....|. .+.. .++|+|||+||+|+.... . +
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~--~------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI----Q--V------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc----C--C-------------
Confidence 57788889999999999999866655554443 3333 358999999999985210 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC---CCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t---GeGI~dLl~~L~~l 1033 (1415)
.......+... ..++++++||++ +.||.+++..|+..
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 00111122211 126899999999 77888888777643
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=165.28 Aligned_cols=149 Identities=24% Similarity=0.293 Sum_probs=95.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
++|+|+|++|+|||||+++|++..+......+.|.......+.+. ....++||||||+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~~ 106 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPHQ 106 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCHH
Confidence 569999999999999999999876433222222222111111100 112599999999833
Q ss_pred ----hhhHHhhccCcccceEEEEeccCCCChhHH-HHHHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|.... ..+..+|++|+|+|+.++...... .+..++. ..++|+|||+||+|+...+ .
T Consensus 107 ~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------~--------- 170 (204)
T cd01878 107 LVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE------E--------- 170 (204)
T ss_pred HHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH------H---------
Confidence 22221 235679999999999987654433 2233333 3468999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+. ..+. ...++++++||++|.||.+++.+|...
T Consensus 171 ----------~~---~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 ----------LE---ERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ----------HH---HHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 00 0010 123589999999999999999988653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=161.11 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=93.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC----cchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH----e~F~ 902 (1415)
.|+|+|++++|||||+++|.+..... ...+.+.+ ... .+|||||. ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-------~~~~~v~~------------------~~~--~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-------RKTQAVEF------------------NDK--GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-------ccceEEEE------------------CCC--CcccCCccccCCHHHH
Confidence 39999999999999999987543111 01111111 111 26999996 3344
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..++..+|++|||+|+..+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 444456788999999999998866554433332 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
..+...+...++ ..|+|+|||++|+||.+|+..|..++..
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 112222333322 2599999999999999999998776544
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=157.60 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=101.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.++....+... .....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN--------------DKRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCChHHHHHHHH
Confidence 48999999999999999999876643322222211111111000 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-+. ..++..+.. .++|+|||+||+|+.... ....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~----~~~~------------------ 126 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER----VVSS------------------ 126 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc----ccCH------------------
Confidence 99999999999999876322222 222333433 357999999999996310 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .++++++||++|.||.+|+.+|+..+
T Consensus 127 -~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 127 -ERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0011111111 14799999999999999999987643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=165.53 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=105.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.....|+|+|..|+|||||+.+++...+......++...+....+.... ....+.||||||++.|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 5556799999999999999999987665433322222222111111110 11258999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.++...++.+|++|||+|+++....+....| ..++ ..++|+|||+||+|+... ...
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-------~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-------cCC--------------
Confidence 9999999999999999999985444433333 2332 246899999999998410 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
. ..+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ~---~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 A---KQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred H---HHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0 001 11111 125889999999999999999987544
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=189.63 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=114.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc----
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 899 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe---- 899 (1415)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+. +.+..++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~----------------~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVE----------------IDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEE----------------ECCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 34455666554332222 223458899999953
Q ss_pred ------chhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 900 ------SFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 900 ------~F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
.|..++. .++..||++|||||+.+|++.|+...+..+...++|+|||+||+|+... ....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~------ 580 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQ------ 580 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHH------
Confidence 3444443 4578899999999999999999999998888889999999999999621 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+...+... +. ....++++++||++|.||.+|+..+...+..
T Consensus 581 ------------~~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 581 ------------RLERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ------------HHHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 011111110 10 1134689999999999999999998876643
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=158.24 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=97.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+.+|....+.. ... ++|..... + .+....+.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~p----t~g~~~~~----------~----~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVET----------V----EYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCC----CCCcceEE----------E----EECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997554432 111 12211100 0 01123489999999999999999
Q ss_pred hccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.||++|||+|+.+... .+..+.|. ++.. .++|+||++||+|+...+ .
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~------------------ 118 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------S------------------ 118 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------C------------------
Confidence 99999999999999976321 11222232 2222 358999999999985210 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+ +++. . ....+.++++||++|.||.+++.+|.
T Consensus 119 -~~~i~~~~---~~~~---~----~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 119 -AAEVTDKL---GLHS---L----RNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -HHHHHHHh---Cccc---c----CCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 01111122 2210 0 12345789999999999999998875
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=161.40 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|..|+|||||+++|....+..+. ..+++.++....+.... ....++||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG--------------VKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC--------------EEEEEEEEeCCCcHHHHHhh
Confidence 4899999999999999999987664322 22222222111111111 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhH-HHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+....+. ..++..+.. .++|+|||+||+|+... +.-.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~----~~~~------------------ 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE----RVVK------------------ 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc----cccC------------------
Confidence 889999999999999987433222 222333332 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
... ...+... + .++++++||++|.||.+|+.+|...+..
T Consensus 126 -~~~-~~~l~~~------------~--~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -RED-GERLAKE------------Y--GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHH-HHHHHHH------------c--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 000 0111110 1 2589999999999999999999876543
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=192.62 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=112.3
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|+|++|+|||||+++|++.... .....|+|.+.-...+. +....+.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~----------------~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE----------------WAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE----------------ECCEEEEEEeCCCcCCCCc
Confidence 356999999999999999999986542 34456777654322222 2234589999999763
Q ss_pred -----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 901 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 901 -----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|......++..||++|||||+.+|+.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4455566788999999999999999999988999999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.....+...|+. .+++|||++|.||.+|+.+|+..+
T Consensus 400 ---------~~~~~~~~lg~~--------------~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 400 ---------YDAAEFWKLGLG--------------EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ---------hhHHHHHHcCCC--------------CeEEEECCCCCCchHHHHHHHHhc
Confidence 001112222221 347999999999999999987654
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=161.66 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=102.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|..|+|||||+++|.+..+... .+ |.+.....+. +....+.|+||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELA----------------IGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 446799999999999999999987654321 11 1111111111 1223589999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCC-hhHHHHHHHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++...+..+|++|+|||+.+.-. ......+..+ . ..++|+||++||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 99999999999999999977321 1222223222 2 2578999999999985311 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...| ++.....-........+.++++||++|.|+.+++.+|..
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 01122222 111000000000113567999999999999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=158.96 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=103.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+.....+++...+.. .+.... ....|.||||||++.|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 48999999999999999999877654333333222110 011100 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+... ++..++. .++|+|||+||+|+.. ...+...+.....+. .
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~~---v--- 135 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQKP---I--- 135 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCCC---c---
Confidence 8999999999999998854333332 2233332 3689999999999852 111111111100000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.......+... .+.++++++||++|.||.+++..++.
T Consensus 136 ~~~~~~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 136 TPETGEKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CHHHHHHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 00000111110 12368999999999999999988775
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=156.64 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=102.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|.+++|||||+++|.+..+.......++.++....+.... ....+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG--------------KTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHHHH
Confidence 3599999999999999999998776543333333332222221111 01248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..|+++|||+|+.+....+... ++..++. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 99999999999999998633222222 2222322 35899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...... ..++++++||++|.||..|+..|+..
T Consensus 128 -~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEK---------------NGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999988753
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=160.03 Aligned_cols=155 Identities=23% Similarity=0.210 Sum_probs=100.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+|....+.. ..+++ |..+... .+....++||||||+..|..++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~----g~~~~~~--------------~~~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----GFNVETV--------------EYKNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCcc-ccCCc----ceeEEEE--------------EECCEEEEEEECCCCHHHHHHH
Confidence 459999999999999999997654431 11222 2111110 1122359999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChh-HHHHHHHH-Hh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...++.+|++|||+|+.+...-. ....|..+ .. .++|+|||+||+|+.... +
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------~----------------- 135 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------N----------------- 135 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------C-----------------
Confidence 99999999999999998732211 12222222 21 368999999999985310 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+...| |+.. + -...+.++++||++|+||.+++.+|...+
T Consensus 136 --~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 --AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred --HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01122222 2210 0 01235688999999999999999986543
|
|
| >PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=141.70 Aligned_cols=80 Identities=48% Similarity=0.747 Sum_probs=69.4
Q ss_pred eeceeeeecccccccCCCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcc
Q 000570 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1362 (1415)
Q Consensus 1283 v~p~~l~i~~~~vf~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~ 1362 (1415)
+.||.|+|+|.|+||.++ +|+| .|+.|+|++|+|| +| ..+|+|.||++++++|++|++|++|||+|+|.
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G--~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~---- 70 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DG--RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGP---- 70 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CS--SCEEEEEEEEETTEEESEEETT-EEEEEEET-----
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CC--EEEEEEEEeEECCcCccccCCCCEEEEEEeCC----
Confidence 469999999999999999 9999 9999999999999 66 45999999999999999999999999999985
Q ss_pred ccccccccccCCCeEEE
Q 000570 1363 QQKMFGRHFDIEDELVS 1379 (1415)
Q Consensus 1363 ~~~~~gr~f~~~d~l~s 1379 (1415)
| |+++||+||.
T Consensus 71 ---~---~i~eGDiLyV 81 (81)
T PF14578_consen 71 ---T---QIKEGDILYV 81 (81)
T ss_dssp -------TB-TT-EEEE
T ss_pred ---c---cCCCCCEEeC
Confidence 3 9999999995
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=153.26 Aligned_cols=153 Identities=24% Similarity=0.225 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|++++|||||+++|++..+.......++.++....+... .....++||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID--------------GKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC--------------CEEEEEEEEecCChHHHHHHHH
Confidence 48999999999999999999876655433333333322222211 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.+.-..... .++..+... ++|++|++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 999999999999999873322222 233344443 4899999999999511 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+. .+... ..++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~-~~~~~--------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQ-QFAKE--------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHH-HHHHH--------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 01111 11111 125899999999999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=161.82 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=96.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~--- 903 (1415)
.|+|+|..++|||||+++|.+..+......+++..+....+.+.. ....++||||||+..|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG--------------RVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC--------------EEEEEEEEeCCCcccCCccch
Confidence 489999999999999999998766543333332222111111111 012488999999876531
Q ss_pred -----HHhhccCcccceEEEEeccCCCChhHHHHH-HHHH------hcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 904 -----LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 904 -----lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
++.+.+..||++|||+|+.++..-+....| ..+. ..++|+|||+||+|+... ....
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 244567889999999999874332222222 2222 246899999999999521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.... ..+++++|||++|.||..|+..++..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111111 13689999999999999999887753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=154.43 Aligned_cols=155 Identities=24% Similarity=0.191 Sum_probs=102.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|++..+.......++..+....+.+. .....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG--------------GKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC--------------CEEEEEEEEECCchHHHHHhhH
Confidence 48999999999999999999876654333333222211111111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.++-..+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~----------------- 124 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVS----------------- 124 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCC-----------------
Confidence 889999999999999875443333222 2222 236899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 125 KSEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00111111111 2578999999999999999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=151.54 Aligned_cols=154 Identities=24% Similarity=0.307 Sum_probs=106.3
Q ss_pred EEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh-----
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 903 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~----- 903 (1415)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999987655 33344444443322222110 34699999999887753
Q ss_pred --HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 904 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 904 --lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+....++.+|++|||+|+..+....+..++..+...++|+|||+||+|+... ....
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~---------------- 123 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEE---------------- 123 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHH----------------
Confidence 3345678899999999999988877776677777789999999999999731 1100
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.......... .....++++++||.+|.|+..|+.+|..+
T Consensus 124 ---~~~~~~~~~~----------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ---ELLELRLLIL----------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ---HHHHHHHhhc----------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0000000000 11245799999999999999999988753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=156.48 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++++|||||+++|++..+.....+.+.... ...+.... ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 489999999999999999998776543333322111 11111111 112378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.+.-.-+.. .++..++ ..++|+||++||+|+... ......+...... . -.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~---~--v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKEK---P--VT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccCC---C--CC
Confidence 999999999999999874332222 1233333 357899999999998531 1111111100000 0 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
........... +..+++.+||++|.||.+++..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111111111 2247999999999999999988764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=162.45 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=100.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+.......+ .......+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999998766543221111 111100111110 0124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHH-HHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
++..+|++|||+|+.+....+....| ..+ ...++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999874332222222 222 2257999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...+ .. ...++++++||++|.||.+|+.+|...+.
T Consensus 125 ~~~~~~~~-~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-EL-------------DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hh-------------hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000011 00 01257899999999999999999987553
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=162.14 Aligned_cols=157 Identities=16% Similarity=0.105 Sum_probs=103.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|||..|+|||||+++|.+..+......+++.++....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4599999999999999999997765433323332222111111110 01248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...+..+|++|||+|+.+.-.-+.. .++..+.. ..+|+|||+||+|+.... ...
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~----~~~------------------- 129 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK----VVE------------------- 129 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc----ccC-------------------
Confidence 9999999999999999874322222 22333333 247999999999986310 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++++||++|.||.+|+.+|...+
T Consensus 130 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 130 TEDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987755
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=161.69 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=103.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+.+|++..+.....+.+... +... ..+ ......|+||||||++.|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~----~~~~-------i~~----~~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN----YVHD-------IFV----DGLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee----eEEE-------EEE----CCEEEEEEEEECCCChhcccccc
Confidence 38999999999999999999876654322222211 1100 000 00113489999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH-
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM- 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~- 981 (1415)
..+..+|++|||+|+++--..+... ++..+.. .++|+|||+||+|+... ......+. .+..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~--------~~~~~ 132 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQ--------RYGKH 132 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHh--------hccCC
Confidence 8999999999999998844333332 3344443 36899999999999621 00000000 0000
Q ss_pred --HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 --RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 --~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........... .+.++++++||++|.||.+++.+|...+
T Consensus 133 ~v~~~~~~~~~~~--------------~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 133 TISYEEGLAVAKR--------------INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCCHHHHHHHHHH--------------cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00001111111 1236899999999999999999887544
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=158.10 Aligned_cols=154 Identities=24% Similarity=0.221 Sum_probs=100.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|+|+|..++|||||+.+|....+.. ..+ .+|..+... .+....+.||||||+..|..++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~----t~~~~~~~~--------------~~~~~~l~l~D~~G~~~~~~~~ 74 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESVT-TIP----TIGFNVETV--------------TYKNISFTVWDVGGQDKIRPLW 74 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-cCC----ccccceEEE--------------EECCEEEEEEECCCChhhHHHH
Confidence 559999999999999999997544421 111 122111110 0112358999999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHHHHH-h---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk-~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..||++|||+|+.+.-. ....+.|..+. . .++|++||+||+|+...+ +.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 132 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------KA---------------- 132 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------CH----------------
Confidence 999999999999999876321 12233343332 2 358999999999985311 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
..+...+ ++.. -....+.++++||++|.||.+++.+|...
T Consensus 133 ---~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 133 ---AEITEKL---GLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred ---HHHHHHh---Cccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1111111 2210 01134678899999999999999998754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=159.77 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=104.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++|||||+.++....+.......+ +..+... + .+ ......|.||||||++.|..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----~~~~~~~--~-----~~----~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV----FDNYSAQ--T-----AV----DGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce----EeeeEEE--E-----EE----CCEEEEEEEEECCCchhhhh
Confidence 34569999999999999999999877654332222 2211100 0 00 01113489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHH-HH-HHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
++...++.+|++|||+|+++...-+... .| ..+.. .++|+|||.||+|+... ......+.... +
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~------~ 134 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQG------Q 134 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhcc------C
Confidence 9999999999999999998733322222 12 22222 36899999999998521 11111100000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......-...|... .+.++++.+||++|.||.++|.+|+..+
T Consensus 135 ~~v~~~~~~~~a~~-------------~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQ-------------IHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHH-------------cCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00000000111110 0235899999999999999999887644
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-15 Score=154.63 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=99.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|.+..+... ...++.. +.... ........++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~---~~~~~------------~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPE---ITIPA------------DVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccc---eEeee------------eecCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998765432 1111110 00000 0001123589999999998888877
Q ss_pred hccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.++..-+... ++..++. .++|+|||+||+|+...+.. ..+ ...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~-------~~~-----------~~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ-------AGL-----------EEE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch-------hHH-----------HHH
Confidence 7889999999999998754444421 2233432 36899999999999632100 000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+..+...+ ....+++++||++|.|+.+++..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 11111111 111379999999999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=157.26 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=97.3
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+++|.+..+.. ...++..++ ..+ .+....|.||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~----------------~~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETV----------------EYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEE----------------EECCEEEEEEECCCChhcchHHHH
Confidence 8899999999999999998764321 111111111 111 112235899999999999999988
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|||+|+.+.-. ......+. ++.. .++|+|||+||+|+.. ..+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~------------------- 117 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG------ALS------------------- 117 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc------CCC-------------------
Confidence 8999999999999876311 11122222 2222 2479999999999852 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...+....+ ..+..+.++++||++|.||.+++.+|...
T Consensus 118 ~~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 118 VEEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 0111111110000 01224578999999999999999988653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=154.61 Aligned_cols=155 Identities=18% Similarity=0.111 Sum_probs=99.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|++..+.....+.+...+ ...... ......+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL--------------DGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE--------------CCEEEEEEEEECCChhhhhHHHH
Confidence 489999999999999999997665433222221111 000000 01112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChh-HHHHHH-HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|+|+|+.+.-.-. ...++. +++ ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632110 112222 222 257999999999998620 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 15899999999999999999887544
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=155.71 Aligned_cols=163 Identities=19% Similarity=0.215 Sum_probs=101.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+++|.+..+.......+..... ..+... .....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVD--------------GKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEEC--------------CEEEEEEEEECCCCcccchhchh
Confidence 689999999999999999987664433222221111 001100 01124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHH-----HHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIES-----LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~-----l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|+.+ +++.+. +..+.. .++|+|||+||+|+... ......+...... ..
T Consensus 66 ~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~---~v- 132 (174)
T smart00174 66 SYPDTDVFLICFSVDS---PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQE---PV- 132 (174)
T ss_pred hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCC---Cc-
Confidence 9999999999999987 344332 233333 37899999999998631 1000000000000 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
............ +.++++++||++|.||.+|+..|+..
T Consensus 133 -~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 133 -TYEQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred -cHHHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 000111111111 22479999999999999999988754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=155.68 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=118.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
..|=||++|..|+|||||||+|++.. +..+.++|.||.+..+.+. ..+.|+|.||+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-------------------~~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-------------------DELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-------------------CcEEEEeCCCcccc
Confidence 55669999999999999999999865 5678899999999866543 238899999952
Q ss_pred --------chhhHHhhccC---cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 900 --------SFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 900 --------~F~~lr~rgl~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
.+..+...++. ...++|+|||+.|++....++.+.+|...++|++|++||+|.+. ..
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~------~~------ 151 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK------KS------ 151 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC------hh------
Confidence 34444444432 26678999999999999999999999999999999999999983 11
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+....+..+...|. +.. .....++.+|+.++.||++|...|..++.
T Consensus 152 ---------~~~k~l~~v~~~l~---~~~---------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 152 ---------ERNKQLNKVAEELK---KPP---------PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---------HHHHHHHHHHHHhc---CCC---------CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 11122233332231 111 11122888999999999999988877654
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=155.15 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=98.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+++|||||+.++.+..+.....+.+. ......+.... ....+.||||||++.|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 589999999999999999997765432222111 11000111000 012378999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhH-HHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+++.-.-+. ..++..+.. .++|+|||+||+|+.... .+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~------~~~---------------- 125 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER------EVS---------------- 125 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC------ccC----------------
Confidence 99999999999999987332111 222222222 468999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
... ...+... + .+++|++||++|.||.+++.+|+..
T Consensus 126 -~~~-~~~~~~~------------~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 -SAE-GRALAEE------------W--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred -HHH-HHHHHHH------------h--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 000 0111110 1 1589999999999999999888653
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-15 Score=176.83 Aligned_cols=132 Identities=26% Similarity=0.339 Sum_probs=103.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcC------------cc----cccccCceeEeeceeEecccccceeeeeccccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGT------------NV----QEGEAGGITQQIGATYFPAENIRERTRELKANA 883 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t------------~v----~~geagGITq~iga~~~~~~~i~~~t~~v~~~~ 883 (1415)
..++|| +.|+.|||||||||.+.|... .+ .+...+|||+...+.++-.+........+....
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 357898 899999999999999999732 11 122347888887776654443222222222223
Q ss_pred ccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
+.+..-|++||.|||.+|+..+..+++++|+|++|||+.+|+..||...|+++..-.+.-++++||+|+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3345569999999999999999999999999999999999999999999999988888788899999984
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=154.73 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=100.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC--cccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t--~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.|+|+|.+++|||||+.+|... .+......++..++....++... .....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 4899999999999999999854 23222222222222222222210 01124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+...+..+|++|+|+|+++........ ++..+.. .++|+|||+||+|+... ..+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~--------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK------AEVTD--------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cCCCH---------------
Confidence 999999999999999998743222222 2233333 35899999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.....+... ..++++++||.+|.||.+++..|...
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011110 12579999999999999999988754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=157.95 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=103.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|++|+|||||+++|++..+.....+++.... ...+.+.. ....+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 489999999999999999997765433322221111 11111110 012478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..+|++|+|+|+.++...+....+ ..+ . ..++|+|||+||+|+...+ ..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~------------------ 125 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVS------------------ 125 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccC------------------
Confidence 999999999999999986554443332 222 2 2467999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+ ..+.. .++ ++++++||++|.||.+++.+|...+.
T Consensus 126 -~~~~-~~~~~------------~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 126 -TEEG-KELAE------------SWG--AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred -HHHH-HHHHH------------HcC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0000 01111 011 48999999999999999999987654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=158.50 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=100.6
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+.+.|+|+|+.|+|||||+++|.+..+... ....|...... .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHH
Confidence 3456699999999999999999987543211 11112111000 1112358999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCC-hhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++...+..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ..
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~-------------- 132 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------AP-------------- 132 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CC--------------
Confidence 998888999999999999976221 1222233222 2346899999999998521 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+..+...+ ++.. + ....++++++||++|+||.+++.+|+.
T Consensus 133 -----~~~i~~~l---~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 133 -----AEEIAEAL---NLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----HHHHHHHc---CCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 01111112 2210 0 113457899999999999999999863
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=158.72 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=101.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|....+.. ... ++|..+... .+....++||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~----T~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIP----TIGFNVETV--------------EYKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCC----ccccceEEE--------------EECCEEEEEEECCCCHhHHHHH
Confidence 349999999999999999997544432 111 112111111 0112358999999999999999
Q ss_pred hhccCcccceEEEEeccCCCC-hhHHHHHH-HHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
...+..+|++|||+|+.+.-. ......|. ++.. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 999999999999999875211 11122222 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l 1038 (1415)
..+...+ ++. ++. ...++++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~~l---~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTEKL---GLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHHHh---CCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 0111111 221 011 12357889999999999999999987665543
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=160.65 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=101.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|||+.++|||||+++|++..+... ...++.+.....+.+.. ....|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 45699999999999999999997765321 11111111111111110 0124899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHH-HHH-HHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~-llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+..+++.+|++|||+|+.+....+... .|. .+. ..++|+|||+||+|+... ..+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------- 139 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------- 139 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC-------------
Confidence 999999999999999998743333332 222 222 135799999999998631 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........... .+++|++||++|.||.+++.+|...+
T Consensus 140 ----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 ----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00001111111 25799999999999999999988655
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=161.01 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=103.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.++....+.+... ....+.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987665444444443332222211110 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHHh------cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|||+|+.+.-...... ++..+.. .++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~---------------- 128 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVK---------------- 128 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccC----------------
Confidence 9999999999999998732222222 2233332 236899999999995211 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
......+... ..++++++||++|.||.+|+.+|+..+
T Consensus 129 ----~~~~~~~~~~--------------~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 129 ----DDKHARFAQA--------------NGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ----HHHHHHHHHH--------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0001112111 014789999999999999999987654
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-16 Score=169.56 Aligned_cols=225 Identities=21% Similarity=0.277 Sum_probs=156.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc---ccccccCceeEeeceeEecccccce------eee---eccc----cc----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE------RTR---ELKA----NA---- 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~---v~~geagGITq~iga~~~~~~~i~~------~t~---~v~~----~~---- 883 (1415)
-...|+-+|||-|||||++.+|.+-. |...-.+.||..+|......-.... .+. .... .+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 44568999999999999999997643 2233357789888763221111000 000 0000 00
Q ss_pred ---ccC-CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-CChhHHHHHHHHHhcCC-ceEEEEEecccccCCc
Q 000570 884 ---TLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWK 957 (1415)
Q Consensus 884 ---~~~-~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiD~~~~w~ 957 (1415)
.++ .+++.|+|+|||.-+...+..|....|.++|+|.++.. .+|||-+||.....+.+ .+||+-||||++..
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e-- 194 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE-- 194 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH--
Confidence 111 24689999999999999999999999999999999875 68999999988887775 78899999999731
Q ss_pred cCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 958 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 958 ~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
+ ..+ +....|...+. |-+ ....|+||+||--+.||+-++++|+..++-+
T Consensus 195 -----~--~A~------------eq~e~I~kFi~--~t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 195 -----S--QAL------------EQHEQIQKFIQ--GTV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred -----H--HHH------------HHHHHHHHHHh--ccc----------cCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 0 011 11122222221 111 2346999999999999999999998876644
Q ss_pred HHHhhhcccccceEEEEEEEEcCc--------ceEEEEEEEeeEEccCCEEEEec
Q 000570 1038 MVEKLTFRNELQCTVLEVKVIEGH--------GTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1038 l~e~l~~~~~~~~~VlEvk~~~G~--------Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.. ++..+.++.|+.+|.+.-- |-++.+.|..|+|++||.|-+-+
T Consensus 244 vR---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 244 VR---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred cc---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 33 4566778899998876543 45666778999999999987643
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=156.18 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=100.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+.+|++..+.......+...+.. .+... .....+.||||||++.|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVD--------------GKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEEC--------------CEEEEEEEEeCCCchhhhhccc
Confidence 49999999999999999999866543322222211110 01110 0112489999999999999888
Q ss_pred hccCcccceEEEEeccCCCChhHH-H-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.++..+|++|||+|+++--.-... . ++..++. .++|+|+|+||+|+...|. ....+....... ..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~~~-----v~ 136 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQEP-----VK 136 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccCCC-----cc
Confidence 889999999999999863221122 1 2223332 3789999999999863211 100010000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
........... +.+++|+|||++|.||.+|+.+|+..
T Consensus 137 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 00000001111 23589999999999999999988753
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=152.38 Aligned_cols=157 Identities=24% Similarity=0.326 Sum_probs=116.9
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCccc-------ccccCc-----eeEeeceeEecccccceeeeecccccccCCC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~-------~geagG-----ITq~iga~~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
..++.+.|+|+|..++||||++.+|...... .....+ +.+++|...+. ...
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-----------------~~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-----------------EDT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-----------------Ccc
Confidence 3567788999999999999999999865421 111112 22333332222 125
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC-CceEEEEEecccccCCccCCChhHHHH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiD~~~~w~~~~~a~~~~~ 967 (1415)
+++|+|||||.+|..|+.-.++.++.+|+|||.+.+..-...+.++++...+ +|++|++||.|+...|.+
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 7999999999999999999999999999999999977776678889999888 999999999999866532
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 968 l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..|...|... + ..+|+|+++|..++|..+.|..|..
T Consensus 140 ----------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 140 ----------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred ----------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHHHHHh
Confidence 1122222211 0 2479999999999999998887754
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=160.61 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.+|.+..+......++..++....+.+.. ....+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~--------------~~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG--------------KTVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHH
Confidence 3499999999999999999998766433333333232222222211 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+...-+.+.. +..++. .++|+|||+||+|+...+. ..
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~------------------ 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS----VA------------------ 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC----CC------------------
Confidence 999999999999999987443333332 333333 4689999999999852110 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
......+... ..++++++||++|.||.+++..|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0011112111 126899999999999999999998766554
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=153.43 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=101.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+++|++..+.....+.+..... ..+... .....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVD--------------GKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC--------------CEEEEEEEEeCCCcccccccch
Confidence 4899999999999999999987764333222221111 111111 0112489999999999988888
Q ss_pred hccCcccceEEEEeccCCCChhH--HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|+|+|+.+....+. ..++..+... ++|+|||+||+|+...+ +....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE------NTLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch------hhhhhcccCCCcc------C
Confidence 88899999999999987433222 2233334333 58999999999997421 0000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 00111111111 2348999999999999999988764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-15 Score=152.41 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=88.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc-----ch
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-----~F 901 (1415)
.|+|+|++|+|||||+++|++..+... . |. +. .+. ..+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~--~--t~--~~-------------------~~~---~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYK--K--TQ--AV-------------------EYN---DGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccc--c--ce--eE-------------------EEc---CeeecCchhhhhhHHHH
Confidence 389999999999999999986643210 0 10 00 011 2689999972 34
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+. ..++.+|++|||+|+.++...++..++.. ...|+|+|+||+|+... ...
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~------------------ 106 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVD------------------ 106 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccC------------------
Confidence 4443 35789999999999998877666444333 24599999999998520 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 107 -~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 -IERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -HHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 001111111111 23789999999999999988763
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-15 Score=174.15 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=96.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-------
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH------- 898 (1415)
|.|+|+|++|+|||||+++|++..+......+.|.+.....+.+. .+..++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999876443333344433321111110 1235999999997
Q ss_pred --cchhhHHhhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 899 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 899 --e~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
+.|..++ ..+..+|++|+|||+++......... ..++. ..++|+|+|+||+|+... ..
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~--------- 318 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PR--------- 318 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------Hh---------
Confidence 3343332 24678999999999988655433322 23333 346899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+. .+.. ...++|+|||++|.||..|+..|..
T Consensus 319 ----------v~----~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 319 ----------IE----RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred ----------HH----HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 00 0100 1136899999999999999988864
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=154.43 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|++++|||||+++|++..+..+. .+.+...+....+.... ....|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE--------------RVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 4899999999999999999987665322 12221111111111110 01237899999999999998
Q ss_pred hhccCcccceEEEEeccCCCChhH-HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...+..+|++|||+|+.+....+. ..++..++.. ++|+|||+||+|+... .... ..+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~-----~~~~-~~v~------------- 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ-----DRSL-RQVD------------- 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc-----cccc-CccC-------------
Confidence 888899999999999987432222 2233444433 6899999999998521 0000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+...... ..++++++||++|.||.+|+.+|...+.
T Consensus 129 ~~~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADE---------------IKAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHH---------------cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011111111 1257899999999999999999886653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-15 Score=157.01 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=76.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|.+..+.... ...+|..+..+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 799999999999999999976554322 22222211111 112245899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChh-HHHHHHHHH--hcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk--~~~vP~IVaINKiD~~ 953 (1415)
.+..+|++|||||+.+..... ....+..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998743221 222233332 2579999999999985
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=155.87 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=103.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++||||||.+|....+.......++.++....+..+. ....|.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4499999999999999999987655433222333222111111111 11348999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHH-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
...++.+|++|||+|+++...-+... ++..+.. .++|+||+.||+|+.... .-.
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~----~v~------------------- 129 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR----QVA------------------- 129 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc----CCC-------------------
Confidence 98899999999999998843332222 2333432 468999999999985210 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... .++++.+||++|.||.++|.+|+..+
T Consensus 130 ~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987644
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=153.12 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=102.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||+.++|||||+.+|++..+.......+...+....+.... ....+.||||||++.|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILG--------------VPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhhHH
Confidence 489999999999999999998776544433333222111111111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..++.+|++|||+|+.+.-..... .++..+... .+|+|+|.||+|+...+ ....
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~----------------- 126 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL----------------- 126 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc-----------------
Confidence 999999999999999763222222 223333222 25799999999985310 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... ..++++.+||.+|.||.+|+..|..++
T Consensus 127 -~~~~~~~~~~~--------------~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 127 -MEQDAIKLAAE--------------MQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -cHHHHHHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00001111110 014789999999999999999987765
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=154.04 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=99.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+. +... ....+|..... ..+....++||||||+..|..++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~----~~~t~g~~~~~--------------~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK----VAPTVGFTPTK--------------LRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc----ccCcccceEEE--------------EEECCEEEEEEECCCcHHHHHHHH
Confidence 3899999999999999999865 2211 11222221110 011223589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChh-HHHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..||++|||||+.+.-..+ ....+..+.. .++|++||+||+|+.... +
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------ 117 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------ 117 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C------------------
Confidence 9999999999999998743222 2333333332 468999999999986311 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCC------CChhhHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1031 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG------eGI~dLl~~L~ 1031 (1415)
...++..+.-..+. ...+..++++++||++| .||.+.|.||+
T Consensus 118 -~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 -GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred -HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 11122222111110 01123478999999998 89999999886
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=153.74 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=101.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+++...+.......+..... ..+... .....|.||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD--------------GKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEEC--------------CEEEEEEEEECCCchhhhhhh
Confidence 35899999999999999999976654332222211110 001000 111248899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-H-HHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...+..+|++|||+|+++.-..+.. . ++..+.. .++|+|||.||+|+... ...+ ..+ ......
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~-------~~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKL-------KEKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHH-------hhccCC
Confidence 9899999999999999874333332 1 2233332 35899999999998521 0000 000 000000
Q ss_pred H--HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 R--LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~--l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
. ..... .+.. .+ +.++++++||++|.||.+|+..|+.
T Consensus 134 ~v~~~~~~-~~~~------------~~-~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 134 PITYPQGL-AMAK------------EI-GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCHHHHH-HHHH------------Hc-CCcEEEEecccccCCHHHHHHHHHH
Confidence 0 00000 1111 01 2358999999999999999988764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=158.85 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=100.5
Q ss_pred EeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhccC
Q 000570 831 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 910 (1415)
Q Consensus 831 lGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~ 910 (1415)
||+.++|||||+.+|++..+.......+..++....+.++. ....|.||||||++.|..++...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997665432222222121111111110 1135999999999999999999999
Q ss_pred cccceEEEEeccCCCChhHHHHH-HHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 911 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 911 ~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
.+|++|||+|+.+..+.+....| ..++. .++|+|||+||+|+... .... ..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-----~v~~-------------------~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-----KVKA-------------------KSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-----cCCH-------------------HHH-
Confidence 99999999999986555444333 33443 46899999999998520 0000 000
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 135899999999999999999987644
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=164.97 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=101.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||..++|||||+++|++..+.....+++. ++....+... .....|.||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~--------------~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR--------------GEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC--------------CEEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998766543333221 1111111111 0113488999999999999998
Q ss_pred hccCcccceEEEEeccCCCChhHHH-HHHHHH------------hcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK------------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk------------~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
..+..+|++|||+|+++.-.-+... ++..+. ..++|+|||+||+|+.... ...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~----~v~---------- 132 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR----EVQ---------- 132 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc----ccC----------
Confidence 8889999999999998743222221 112221 1368999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+...+... ..++++++||++|.||.+|+.+|+.++
T Consensus 133 ---------~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 133 ---------RDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---------HHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 01111111110 135899999999999999999998754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=154.26 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=102.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.......++.+.....+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN--------------KIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHhhHH
Confidence 489999999999999999998776542222222222111111110 012488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHH-HHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+..+|++|||+|+.+.-....+.. +..+.. .++|+||++||+|+... ..+.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~----------------- 124 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD----------------- 124 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC-----------------
Confidence 99999999999999987432222222 222322 35799999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
......+... ..++++.+||++|.||.+++.+|+..+..
T Consensus 125 -~~~~~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 -SNIAKSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHHHHHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000111111 12489999999999999999998876543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=152.32 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=98.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|.+|+|||||+++|.+..+.....+. ++..+.. ...+ ......+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t----~~~~~~~-------~~~~----~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPT----IEDSYRK-------QVEI----DGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCc----chheEEE-------EEEE----CCEEEEEEEEeCCCcccchhhhH
Confidence 4899999999999999999866543221111 1111100 0000 00112478999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HH----HHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~l----lk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
..+..+|++|||+|+.+.-.-+....| .. ....++|+|+++||+|+... ....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~~---------------- 125 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQVS---------------- 125 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------CccC----------------
Confidence 999999999999999874322222221 11 12346899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.......... + +.++++++||++|.||.+++.+|+..
T Consensus 126 -~~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 126 -REDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred -HHHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 0001111111 1 23689999999999999999998753
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=153.54 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=100.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|++..+.......+..++....+.... ....|.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG--------------TEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCCchhHHHhhH
Confidence 489999999999999999998766543333322222111111111 012489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+....+.. .++..++. ..+| |+|+||+|+........ + ..
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~---------------~----~~ 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE---------------Q----EE 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh---------------h----hh
Confidence 999999999999999873322222 22333333 2356 67899999963210000 0 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+......+... + .++++++||++|.||.+|+.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~--~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------M--KAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111112111 1 15899999999999999999887544
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=150.09 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+......+++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 4899999999999999999987765443333333322222211110 12488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
..+..+|++|+|+|+.+. .+.+.+ ..+.. .++|+|++.||+|+... ....
T Consensus 68 ~~~~~~~~~i~v~d~~~~---~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~---------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSE---RSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG---------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC----------------
Confidence 999999999999999873 333322 22222 35899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+... + .++++++||++|.||.+++.+|..+
T Consensus 125 ----~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 ----DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ----HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0011111111 1 1589999999999999999998753
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=158.29 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=103.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+++|++..+......+++.++....+.+. .. ....|.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~----------~~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE----------PG---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC----------CC---CEEEEEEEeCCcchhHHHHH
Confidence 459999999999999999999876643322222222111111110 00 01248999999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
...++.+|++|||+|+.+ +.++..+ ..+. ...+|+||+.||+|+...+ ...
T Consensus 70 ~~~~~~~d~iilv~D~~~---~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~-------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITN---RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT-------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC--------------
Confidence 999999999999999987 3333332 2222 2346889999999986210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
......+... ++ ++++++||++|.||.+++.+|...+...
T Consensus 129 ------~~~~~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 ------REEAEKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ------HHHHHHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001112111 11 6899999999999999999998765544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=185.16 Aligned_cols=154 Identities=24% Similarity=0.303 Sum_probs=108.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+++||+|+|||||+|+|++.+...+...|+|.+.-...+. +....++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~----------------~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS----------------TTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE----------------cCceEEEEEECCCcccccc
Confidence 345799999999999999999998877777778887654333222 2234599999999998864
Q ss_pred HH----------hhc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 904 LR----------SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 904 lr----------~rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.. ... ...+|++|+|||+.+... ....+..+...++|+|+|+||+|+.. ...+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~------~~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE------KQNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh------ccCcH------
Confidence 21 112 246899999999988533 33456677788999999999999852 11110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...|.+. + .+|+||+||.+|.||++|+..+....
T Consensus 132 ---------id----~~~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------ID----IDALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HH----HHHHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 01 1112111 1 25899999999999999999887654
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=150.95 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=95.0
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-hhhHHh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 906 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~-F~~lr~ 906 (1415)
|+|+|+.++|||||+.+++...+.....+.+ ..+....+.+ ......+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~--------------~~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTI--------------DGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEE--------------CCEEEEEEEEECCCCcccccchHH
Confidence 8999999999999999998654432111111 1110001100 01112488999999985 455667
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHH-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+.++.+|++|||+|+.+....+....| ..+. ..++|+|+|+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788899999999999885333322222 2222 237899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~ 1034 (1415)
.... ..+... + .++++++||++|. ||.+++..|+..+
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEG-EKLASE------------L--GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHH-HHHHHH------------c--CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 0000 011110 1 1589999999995 9999999987644
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=148.58 Aligned_cols=152 Identities=19% Similarity=0.117 Sum_probs=98.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.|+|||||+++|++..+.......+ .+.....+... .....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTI-EDSYRKTIVVD--------------GETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCCh-hHeEEEEEEEC--------------CEEEEEEEEECCChHHHHHHHHH
Confidence 8999999999999999998765433322211 11111101000 01124889999999999999999
Q ss_pred ccCcccceEEEEeccCCCCh-hHHHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEP-QTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~-QT~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+..+|++|+|+|+.+.... ....++..+.. .++|++||+||+|+...+ ...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec-------------------
Confidence 99999999999998773221 12222333322 368999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+...+... .++++++||.+|.||.+++.+|..
T Consensus 124 ~~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 124 KEEGKALAKEW---------------GCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHh
Confidence 01111112111 158999999999999999998875
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=157.52 Aligned_cols=187 Identities=20% Similarity=0.261 Sum_probs=111.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 897 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG 897 (1415)
.+.-|...|+|+|.+|+|||||.|.+.++.|..-.. .++++++.+....- ..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-----------------eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-----------------ETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-----------------ceEEEEecCCc
Confidence 455677889999999999999999999887754222 22233332222211 13599999999
Q ss_pred Cc------------chhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhc-CCceEEEEEecccccCCccCCChhH
Q 000570 898 HE------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 898 He------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.. +|.....+++..+|++|+|+|+.+.-.+.....|..|..+ ++|-|+++||+|.+..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--------- 200 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--------- 200 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh---------
Confidence 22 1222344678889999999999863333344455556554 5899999999998631
Q ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHHHHHcCCchhhhhcc-cCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQ-NEFNMRLVQIVTQLKEQGMNTELYYKN-KDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 965 ~~~l~~q~~~v~-~ef~~~l~~I~~~L~e~gl~~e~~~~~-~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...|......+- ..+......+...|.. ......|+. -.|..+-.+|++||++|.||.+|-++|+..+
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 011111000000 0000001111111211 111112211 1244566799999999999999999998764
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=151.61 Aligned_cols=150 Identities=21% Similarity=0.191 Sum_probs=93.3
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccC-CCCEEEEeCCCCcch-------
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHESF------- 901 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~-~~~l~iIDTPGHe~F------- 901 (1415)
|+|+.|+|||||+++|.+..+..+...+.|.+.....+. +. ...+.||||||+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE----------------VPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE----------------cCCCCeEEEEeccccchhhhcCCCc
Confidence 689999999999999998765333444445443222111 12 346899999997432
Q ss_pred hhHHhhccCcccceEEEEeccCCC-----C-hhHHH-HHHHHH----------hcCCceEEEEEecccccCCccCCChhH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGL-----E-PQTIE-SLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv-----~-~QT~E-~l~llk----------~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.....+.+..+|++|+|+|+.+.. . ..... ++..+. ..++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~- 137 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EE- 137 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hH-
Confidence 112234567799999999998863 2 11111 222222 147899999999999631 00
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+......... .....+++++||++|.|+..|+..|..+
T Consensus 138 ------------------~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 ------------------LEEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000000000 1123579999999999999999987643
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-14 Score=155.86 Aligned_cols=157 Identities=22% Similarity=0.170 Sum_probs=101.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+++|++..+.......++.+.+...+.+.. ....|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~--------------~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN--------------KPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999998766543322222221111111110 00148899999999999999
Q ss_pred hhccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
...++.+|++|||+|+.+....+.. .++..+.. .++|+|+++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999874332222 22222222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......+... .++++++||++|.||.++|.+++..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999998887554
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=151.52 Aligned_cols=166 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||+|+.++....+.......+ +..+... + .+. .....|.||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti----~~~~~~~--~-----~~~----~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSAN--V-----SVD----GNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcc----eeeeEEE--E-----EEC----CEEEEEEEEECCCCccccccch
Confidence 48999999999999999999877654332322 2111100 0 000 0113589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+.. .++..++. .++|+|||.||+|+... +.. ...+... + . .
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~----~~~-----~~~~~~~-~-~---v 133 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD----KQY-----LADHPGA-S-P---I 133 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC----hhh-----hhhccCC-C-C---C
Confidence 999999999999999874443332 23444442 36899999999999521 000 0000000 0 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...-...+... + +..+++.|||++|.||.+++..++..+
T Consensus 134 ~~~~~~~~a~~------------~-~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 134 TTAQGEELRKQ------------I-GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHH------------c-CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00001111111 0 123699999999999999999887643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=169.89 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=98.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|.|+|+|.+|+|||||+|+|++..+......|.|.+.....+.+. ....++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCHH
Confidence 679999999999999999999876654343444433321111110 112588999999743
Q ss_pred ----hhhHHhhccCcccceEEEEeccCCCChhHH----HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~----E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..+ ...+..+|++|+|+|+++....... ..+..+...++|+|+|+||+|++..+ .
T Consensus 263 lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-----~---------- 326 (426)
T PRK11058 263 LVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-----E---------- 326 (426)
T ss_pred HHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-----h----------
Confidence 3332 3346789999999999986543332 23344444578999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+. ....+ ...+|+|||++|.||..|+.+|...+.
T Consensus 327 --------~~~~-----~~~~~--------------~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --------PRID-----RDEEN--------------KPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --------HHHH-----HHhcC--------------CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0000 00111 112588999999999999999987653
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=176.21 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=104.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
.+.|+|+|++|+|||||+++|++..+. .....|+|.++....+.+ .+..++||||||+..|..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----------------~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----------------DGIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----------------CCeEEEEEeCCCCCCCcc
Confidence 356999999999999999999987642 344556665543322222 223589999999876643
Q ss_pred H--------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 904 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 904 l--------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+ ....+..+|++|+|+|+.++...+....|.. ..++|+|+|+||+|+...+ .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------D------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------h------------
Confidence 2 2235778999999999999877666555544 4578999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+. . ....++|++||++|.||..|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=165.04 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=99.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
-|+|+|.+++||||||++|++.........++|. ++|...+. ....|+|+||||...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----------------~~~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----------------DYKSFVIADIPGLIEGASE 222 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----------------CCcEEEEEeCCCccCCCCc
Confidence 3999999999999999999976544333333343 33332221 123599999999632
Q ss_pred ---hhhHHhhccCcccceEEEEeccCCCChhHHHHH-HHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
+.....+.+..|+++|+|||+.+.-..+....| ..|.. .++|+|||+||||++..+ ...
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~------ 290 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER------ 290 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH------
Confidence 333445667789999999999864333333333 33433 368999999999986311 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
......+... ..+++|+|||++|+||.+|+.+|..++.
T Consensus 291 ------------~~~~~~~~~~--------------~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 291 ------------EKRAALELAA--------------LGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred ------------HHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000011000 1157999999999999999999987654
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=148.48 Aligned_cols=134 Identities=26% Similarity=0.339 Sum_probs=98.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC----Ccchhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 903 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----He~F~~ 903 (1415)
|.|||.+++|||||+.+|.+...... -||.+..+ =.+||||| +..|..
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~------------------------~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY------------------------DNTIDTPGEYIENPRFYH 55 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec------------------------ccEEECChhheeCHHHHH
Confidence 89999999999999999987654322 24443211 24699999 555666
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
.....+..||+++||+|+.... ....-.++..++.|+|=||||+|+..+ ...+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~---~~~pP~fa~~f~~pvIGVITK~Dl~~~------------------------~~~i 108 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPR---SVFPPGFASMFNKPVIGVITKIDLPSD------------------------DANI 108 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCC---ccCCchhhcccCCCEEEEEECccCccc------------------------hhhH
Confidence 5566677899999999998743 223345667788999999999999621 1234
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
......|...|+. .+|+||+++|+||.+|.++|
T Consensus 109 ~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 109 ERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHH
Confidence 5556677777753 56999999999999998876
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=171.33 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=94.1
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHcCcccccc-----------------cCceeEeeceeEecccccceeeeecccc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------------AGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-----------------agGITq~iga~~~~~~~i~~~t~~v~~~ 882 (1415)
+..+|+ |+++||-.||||+|++.|......... .+|++++..-..+-.. +
T Consensus 125 p~~irn--V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~-----------D 191 (971)
T KOG0468|consen 125 PERIRN--VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS-----------D 191 (971)
T ss_pred cceEEE--EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe-----------c
Confidence 455676 999999999999999999865443221 1222222211111111 1
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..-+.+-++|+|||||.+|+..+.++++.+|++|||||+.+|++-+|...|.++-..++|++|||||+|++
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 12234569999999999999999999999999999999999999999999999999999999999999986
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=166.04 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=96.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~---- 900 (1415)
-|+|+|.+++||||||++|+..........++| .++|...+. ....|+|+||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-----------------~~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-----------------DGRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-----------------CceEEEEEeCCCcccCCcc
Confidence 499999999999999999997653332222223 333332221 013589999999742
Q ss_pred ---hhhHHhhccCcccceEEEEeccCC---CChhHHHHH-HHHHh-----cCCceEEEEEecccccCCccCCChhHHHHH
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~G---v~~QT~E~l-~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
+.....+.+..||++|+|||+.+. ...+....| +.|.. .+.|+|||+||+|++.. ..
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----- 290 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----- 290 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH-----
Confidence 223344556679999999999864 122233332 23332 36899999999999631 00
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+..+...|... + .+++|+|||++|+||.+|+.+|..++
T Consensus 291 --------------~~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 --------------LAELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --------------HHHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 11112222211 0 14799999999999999999887643
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-14 Score=168.14 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=99.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
-|+|+|.+|+||||||++|++..+......++|.+.....+.+. ....|.|+||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~---------------~~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD---------------DERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC---------------CCcEEEEEeCCCccccccchh
Confidence 39999999999999999999766544444444533322222111 012499999999532
Q ss_pred -hhhHHhhccCcccceEEEEeccC----CCChhHHHHHHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~----Gv~~QT~E~l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+.....+.+..||++|+|||+.. ....+...+++.+.. .+.|+|||+||+|++. ...
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~------~~e------- 292 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD------EEE------- 292 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC------hHH-------
Confidence 22233456788999999999872 111222333444444 3589999999999862 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+...+..+... ++...++|++||++|.||.+|+..|..++.
T Consensus 293 ------------l~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 293 ------------AEERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------HHHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 01111112111 011237899999999999999999987664
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.8e-14 Score=144.58 Aligned_cols=153 Identities=24% Similarity=0.349 Sum_probs=100.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+|+|++|+|||||++.|.+.... .....+.|..+..+.+ ...++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-------------------NDKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-------------------cCeEEEecCCCccccccCH
Confidence 799999999999999999953332 1112223332211111 01599999999754
Q ss_pred -----hhhHHhh---ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 -----FTNLRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 -----F~~lr~r---gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|..+... ....++++++|+|+.+..+......+..+...++|+++++||+|++.. .. .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~------~~-~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK------SE-L------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh------HH-H-------
Confidence 3333322 233567899999999888888888888888889999999999998631 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+...+.. +....+++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~-------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKL-------------FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHh-------------ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 0000111111211 1134689999999999999999988754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=150.49 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..|+|+|..|+|||||+.+|++..+. ....+.+..+.....+.+.. ....+.||||+|...|..+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~--------------~~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG--------------QEKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC--------------eEEEEEEEecCCccccccc
Confidence 34999999999999999999987765 33333222221111111111 0124789999999999988
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHH----HHHHH-hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIES----LNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~----l~llk-~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+..||++|||+|+.+. .+.+. +..+. ..++|+|+|+||+|+...+.. . .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~---~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-----~----~---------- 128 (169)
T cd01892 71 NDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-----Y----E---------- 128 (169)
T ss_pred chhhhhcCCEEEEEEeCCCH---HHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-----c----c----------
Confidence 88888999999999999773 33333 33332 236899999999998531100 0 0
Q ss_pred HHHHHHHHHHHH-HcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLK-EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~-e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
... ..+. ..++ .+++++||.+|.||.+|+..|...+
T Consensus 129 -~~~----~~~~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 129 -VQP----DEFCRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred -cCH----HHHHHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 000 0111 1111 1458999999999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=147.74 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=99.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.++.+..+.....+.+ .+.....+..+. ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 48999999999999999998765543222211 111111111110 112488999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+.-.-+.. .++..+.. .++|+||++||+|+... ......+...... .-.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGEK-----PVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCCC-----CcC
Confidence 999999999999999874332222 23444443 46899999999998521 1110000000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+. .|... .+..+++++||++|.||.+|+..++
T Consensus 136 ~~~~~-~~a~~-------------~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAK-ALAEK-------------IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHH-HHHHH-------------hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 00111 11111 0124899999999999999998765
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=170.32 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=97.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
.|+|+|.+++||||||++|++.........++|.++....+. +....|+|+||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~----------------~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQ----------------AGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEE----------------ECCeEEEEEECCCCccccchhh
Confidence 499999999999999999997655444444444333222221 1123589999999532
Q ss_pred -hhhHHhhccCcccceEEEEeccC---CCCh-hHHHHH-----HHH----------HhcCCceEEEEEecccccCCccCC
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMH---GLEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~---Gv~~-QT~E~l-----~ll----------k~~~vP~IVaINKiD~~~~w~~~~ 960 (1415)
......+.+..||++|+|||+.+ +..+ ..+..| .++ ...+.|+|||+||+|++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 11223455677999999999974 1111 112222 222 2246899999999998520
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
... ...+...|... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~el------------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -REL------------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HHH------------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 000 00111122211 2589999999999999999999877654
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=147.47 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+.....+.+..... ..+... .....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEID--------------EQRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEEC--------------CEEEEEEEEECCCchhhhhcch
Confidence 4899999999999999999987665433233221110 011111 0113489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~ 953 (1415)
..++.+|++|||+|+++.-.-+.. .++..++. .++|+|||.||+|+.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 999999999999999874433331 23333433 368999999999985
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-14 Score=150.14 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=106.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++||||||.+|....+.. +...+|..... +.+....++|+|.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEeccccccccc
Confidence 33459999999999999999998654332 22222221111 112234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC-ChhHHHHHHHHH----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++..++..+|++|||||+++.- .....+.|..+. ..++|++|++||+|+... .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch---------------
Confidence 9999999999999999998632 233444444332 246899999999998631 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
...+...|....+. ....+.++++||.+|+||.+.++||...
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11222222212111 1356789999999999999999998753
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=152.29 Aligned_cols=187 Identities=16% Similarity=0.153 Sum_probs=106.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
|.|+|+|+.|+|||||+.+|....+.... ..++..++.+.+... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 56999999999999999999876543221 222222222222110 112459999999999999988
Q ss_pred hhccCcc-cceEEEEeccCCCC--hhHHHHHHH-H---H--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 906 SRGSGLC-DIAILVVDIMHGLE--PQTIESLNL-L---K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 906 ~rgl~~a-DiaILVVDa~~Gv~--~QT~E~l~l-l---k--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
...+..+ +++|||||+.+... ..+.++|.. + . ..++|+|||+||+|+... .+...+...|......++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a---~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA---KPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc---CCHHHHHHHHHHHHHHHH
Confidence 8888888 99999999988531 223333322 1 1 147999999999998632 122223333322222211
Q ss_pred HHHHHHHHHHHHHHHHc----CCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQ----GMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 1031 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~----gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~ 1031 (1415)
..-...+..+...-... |.. .-.+.-..+...|.++.+|+..+. ||..+..||.
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~-~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKG-GKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHhcccccccccccccccccccc-CcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 11110000000000000 000 000111233467899999999876 5888777764
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=147.88 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=101.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+++...+.....+.+...+. ..+..+ .....|.||||+|.+.|..++.
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~--------------~~~~~l~iwDtaG~e~~~~~~~ 71 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID--------------TQRIELSLWDTSGSPYYDNVRP 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEEC--------------CEEEEEEEEECCCchhhHhhhh
Confidence 4999999999999999999987665432222211110 011111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|||+|+.+...-+.. .++..++. .++|+|||.||+|+... ......+..+.... . .
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~~---v--~ 140 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQTP---V--S 140 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCCC---C--C
Confidence 999999999999999874333332 22233333 36899999999998521 01000000000000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCC-hhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeG-I~dLl~~L~~ 1032 (1415)
... ...|... + +.++++.|||++|.| |.+++..++.
T Consensus 141 ~~~-~~~~a~~------------~-~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 141 YDQ-GANMAKQ------------I-GAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHH-HHHHHHH------------c-CCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 001 1112111 0 124899999999998 9999988765
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=153.05 Aligned_cols=171 Identities=17% Similarity=0.121 Sum_probs=104.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
....|+|||..++|||+|+.+|....+.......|..... ..+... -....|.||||||++.|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~--------------~~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE--------------EQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC--------------CEEEEEEEEeCCCchhhHH
Confidence 3455999999999999999999987665433333321110 001110 0112489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhH--HHHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
++..+++.+|++|||+|+++...-+. ..++..++. .++|+|||.||+|+... ......+..+... ..
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~~---~V 147 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQA---PI 147 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccCC---cC
Confidence 99999999999999999987433332 122334442 36899999999998521 0000000000000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCC-ChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~dLl~~L~~l~ 1034 (1415)
............| ..+++.|||++|. ||.++|..++..+
T Consensus 148 --s~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 148 --SYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred --CHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 0001111111111 1268999999998 8999999887644
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=164.75 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=96.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
-|+|+|.+++||||||++|++.........++|.++....+.+. ....|+|+||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---------------~~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---------------DGRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---------------CCceEEEEECCCCcccccccc
Confidence 49999999999999999999766443333444443322221111 023599999999632
Q ss_pred -hhhHHhhccCcccceEEEEeccCC--CCh-hHHH-HHHHHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 901 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIE-SLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 901 -F~~lr~rgl~~aDiaILVVDa~~G--v~~-QT~E-~l~llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+.....+.+..|+++|+|||+++. ..+ .... ++..|.. .++|+|||+||+|+.. ..
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~------- 290 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE------- 290 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH-------
Confidence 222334556679999999999752 222 2222 2334443 3689999999999741 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..+. .+... ++ +++|+|||++|+||.+|+.+|..++.
T Consensus 291 ----------e~l~----~l~~~------------l~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 291 ----------ENLE----EFKEK------------LG--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred ----------HHHH----HHHHH------------hC--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011 11111 01 47999999999999999999877654
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=152.87 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=77.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|||..++|||+||.+|.+..+.....+++...... .+.++ .....|.||||+|++.|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~--------------~~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEID--------------KRRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEEC--------------CEEEEEEEEeCCCcHHHHHHhH
Confidence 48999999999999999999876654333333211110 11111 0112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----H-HHHh--cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----N-LLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~-llk~--~~vP~IVaINKiD~~ 953 (1415)
.++..+|++|||+|+.+. ++++.+ . .++. .++|+|||.||+|+.
T Consensus 68 ~~~~~~d~illvfdis~~---~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 68 LAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HhccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 999999999999999884 443332 2 2222 468999999999985
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=166.81 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=103.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
+.|+|+|++|+|||||+++|++... ......|+|.++....+.+ .+..++||||||+..+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~----------------~g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL----------------NGILIKLLDTAGIREHADF 267 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE----------------CCEEEEEeeCCCcccchhH
Confidence 4599999999999999999998653 2344566776643333222 2234899999998665432
Q ss_pred --------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 905 --------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 905 --------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
....+..+|++|||+|+.++...... ++..+...++|+|+|+||+|+... +.
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-------~~------------ 327 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-------SL------------ 327 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-------ch------------
Confidence 23567789999999999988776665 566666678999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
. .+... ..+++|++||++ .||.+++..|...+.
T Consensus 328 -------~----~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -------E----FFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -------h----hhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 01000 014788999998 599999988876543
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=142.48 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=116.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.+|...|++||..++|||+|+.++++..+.......|..+.-...+.+... ...|.||||.|++.|
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~--------------~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--------------TVRLQLWDTAGQERF 84 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc--------------EEEEEEEecccHHHH
Confidence 456577999999999999999999999888766666655554444433221 135999999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcC----CceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
..+...+++.+.+||+|+|+.+-- -.+|..+|.-++..+ +-+++|.||.||+.. ..+ .+
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk------rqv----------s~ 148 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK------RQV----------SI 148 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch------hhh----------hH
Confidence 999999999999999999998743 356777777666532 456789999999731 000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+ +. ....++ .+-++.+||++|+||..|+..|..+++.
T Consensus 149 eE-g~------~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 149 EE-GE------RKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HH-HH------HHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 00 00 111111 1478999999999999998887665543
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=137.91 Aligned_cols=151 Identities=24% Similarity=0.224 Sum_probs=99.5
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhcc
Q 000570 830 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 909 (1415)
Q Consensus 830 IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rgl 909 (1415)
|+|++++|||||+++|.+.............+.....+... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 68999999999999999776521111111111111111110 1123589999999999988888888
Q ss_pred CcccceEEEEeccCCCChhHHHHH-----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 910 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 910 ~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
..+|++|+|+|+.++........+ ......++|+||++||+|+... ... ...
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------~~~-~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------RVV-SEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------cch-HHH----------------
Confidence 999999999999987665555443 3334567899999999998631 000 000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
.....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00111111 1346899999999999999998874
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=150.86 Aligned_cols=154 Identities=15% Similarity=0.079 Sum_probs=93.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|+|+|..|+|||||+.+|+...+. ......+..+.....+.+. .....|+||||||+..+ ++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~--------------~~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD--------------GEESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC--------------CEEEEEEEEeCCCcchH--HH
Confidence 4899999999999999999865543 1111111101111111111 11235899999999843 23
Q ss_pred hhccC-cccceEEEEeccCCCChhH-HHHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 906 SRGSG-LCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 906 ~rgl~-~aDiaILVVDa~~Gv~~QT-~E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
...+. .+|++|||+|+.+.-.... ..++..+.. .++|+|||+||+|+.... .+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~------~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR------EVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc------eec--------------
Confidence 34455 8999999999987432221 222333333 368999999999985310 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.... ..+... ..++++++||++|.||.+|+.+|+..+
T Consensus 126 ---~~~~-~~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 126 ---VQEG-RACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ---HHHH-HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 011110 124789999999999999999987655
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=142.74 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=109.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||+|++++.+..+...... .||+.++.-+.. . +-....|.||||.|++.|..+..
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qyka----TIgadFltKev~--------V--d~~~vtlQiWDTAGQERFqsLg~ 76 (210)
T KOG0394|consen 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKA----TIGADFLTKEVQ--------V--DDRSVTLQIWDTAGQERFQSLGV 76 (210)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhcc----ccchhheeeEEE--------E--cCeEEEEEEEecccHHHhhhccc
Confidence 489999999999999999998776543322 244444332211 0 11123589999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH--HHHhcC------CceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMRN------TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~--llk~~~------vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
..++.+|+++||+|.++.-.-.+++.|+ +|..+. -||||+.||||+..+ .+-.-+
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~------~~r~VS----------- 139 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG------KSRQVS----------- 139 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC------ccceee-----------
Confidence 9999999999999998855555566663 444433 499999999998532 000000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... .+++|+|.+||+.+.||.+.+..+.+..
T Consensus 140 ----~~~Aq~WC~s--------------~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 140 ----EKKAQTWCKS--------------KGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ----HHHHHHHHHh--------------cCCceeEEecccccccHHHHHHHHHHHH
Confidence 0111122222 2468999999999999999998876543
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=143.50 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=111.2
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+...|++||..++|||||+-++....+... +..+||+.|+.-.. .+. -....+.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv------~~~----~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTV------TVD----DNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEE------EeC----CcEEEEEEEEcCCccccc
Confidence 4556799999999999999999998877754 34456766653221 111 012358899999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHH-HHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+...+++.+++||||+|+++--.-++... +..|... ++-+.+|.||+|+... +.-.
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V~--------------- 129 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REVE--------------- 129 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----cccc---------------
Confidence 999999999999999999998444333333 3445443 2345569999999621 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..........+| .++|.+||+||.||.+++..|...++
T Consensus 130 ----~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 130 ----FEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred ----HHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhcc
Confidence 111222222232 58999999999999999998876554
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=143.84 Aligned_cols=164 Identities=20% Similarity=0.153 Sum_probs=97.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..|+|||||+++|....+.......+...+. ..+... .....+.+|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD--------------GKPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC--------------CEEEEEEEEECCCChhccccch
Confidence 4899999999999999999865553322121111110 000000 0112488999999999988777
Q ss_pred hccCcccceEEEEeccCCCChhHH--HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+|++|+|+|+.+.-..+.. .++..++. .++|+|||.||+|+...- . ......... +. .
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~----~-~~~~~~~~~-------~~-~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA----V-AKEEYRTQR-------FV-P 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc----c-cccccccCC-------cC-C
Confidence 778899999999999764322222 12333332 368999999999985310 0 000000000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
........... +.+++|.|||++|.||.+++.++..
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHH
Confidence 00010111111 2347999999999999999998875
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=150.45 Aligned_cols=198 Identities=21% Similarity=0.297 Sum_probs=118.2
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc---------------------------------------cccccCceeEee
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV---------------------------------------QEGEAGGITQQI 862 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v---------------------------------------~~geagGITq~i 862 (1415)
.-|+++|+|+|..|+||||++.+|...-. .-|..|||+..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34667789999999999999999963211 223344444333
Q ss_pred ceeEecccccceeeeecccccccCCCCEEEEeCCCCc-chhhHH-------hhccCcccceEEEEeccCCCChhHHHH--
Q 000570 863 GATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIES-- 932 (1415)
Q Consensus 863 ga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-~F~~lr-------~rgl~~aDiaILVVDa~~Gv~~QT~E~-- 932 (1415)
..+....+... ..|.. .-....+.||||||+- .|+-.. ..+++..-++++|||....-.|.|.-+
T Consensus 96 NLF~tk~dqv~---~~iek--~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNM 170 (366)
T KOG1532|consen 96 NLFATKFDQVI---ELIEK--RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNM 170 (366)
T ss_pred HHHHHHHHHHH---HHHHH--hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHH
Confidence 22211111000 00000 0011358999999964 443211 122344567899999988777777544
Q ss_pred ---HHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCCCc
Q 000570 933 ---LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDRGE 1008 (1415)
Q Consensus 933 ---l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~-~l~~I~~~L~e~gl~~e~~~~~~~~g~ 1008 (1415)
..+|....+|+|||.||+|+. ...|........+..+..+.. .-.-+...+....|..+-||+
T Consensus 171 lYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~------ 237 (366)
T KOG1532|consen 171 LYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR------ 237 (366)
T ss_pred HHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh------
Confidence 345667789999999999997 455665555555555544442 111122222333344444443
Q ss_pred ceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 1009 TFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 1009 ~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.+.+|.||+.||.|+.+++..+...+..+
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 46899999999999999998877655443
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=138.40 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=102.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|.+..+.......+..+.....+.... ....|.||||||+..|..++..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDG--------------KPVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETT--------------EEEEEEEEEETTSGGGHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccc--------------cccccccccccccccccccccc
Confidence 89999999999999999998766543333221222222221111 1124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHH----HHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN----LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~----llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+..+|++|||+|.++ +.+.+.+. .+. ..++|+||+.||.|+...+ ..+
T Consensus 68 ~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~----------------- 123 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVS----------------- 123 (162)
T ss_dssp HHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSC-----------------
T ss_pred cccccccccccccccc---cccccccccccccccccccccccceeeeccccccccc----cch-----------------
Confidence 9999999999999987 34443332 222 2258999999999986311 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+....... + ++++.+||++|.||.+++..++..+
T Consensus 124 --~~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 --VEEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp --HHHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 01111112221 2 6999999999999999999887644
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=170.49 Aligned_cols=146 Identities=25% Similarity=0.267 Sum_probs=103.1
Q ss_pred eCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH------H
Q 000570 832 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 905 (1415)
Q Consensus 832 GhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l------r 905 (1415)
|.+|+|||||+++|++.++..+...|+|.+.....+.+. ...++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ----------------GEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC----------------CeEEEEEECCCccccCccchHHHHH
Confidence 889999999999999988777778888877654443322 234899999999988653 1
Q ss_pred hh--ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 906 SR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 906 ~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
.. ....+|++|+|+|+.+. ......+..+...++|+|+|+||+|+... ..+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i------------------- 117 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGI------------------- 117 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCC-------------------
Confidence 21 23468999999999872 23444555666788999999999998521 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..-...+.+. + .+|++++||++|.|+++|++.+....
T Consensus 118 ~~d~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 118 RIDEEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred hhhHHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0001112111 1 25899999999999999999987653
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=145.20 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=101.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.....|+|+|+.|+|||||+++++...+......++...+....+... .....|.+|||||+..|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~i~i~~~Dt~g~~~~~ 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN--------------CGPICFNVWDTAGQEKFG 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC--------------CeEEEEEEEECCCchhhh
Confidence 334569999999999999998877655443222222222211111111 111248999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
.++...+..++++|+|+|+.+....++...| ..+. ..++|+++++||+|+... ...
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------~~~-------------- 131 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-------QVK-------------- 131 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-------cCC--------------
Confidence 9998888899999999999876555444333 2222 246899999999998520 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+.. ..+.++++||++|.||..++.+|...
T Consensus 132 ----~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 132 ----ARQITFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred ----HHHHHHHHH---------------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 001111111 12478999999999998888877643
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=139.30 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|+|..|+|||-|+-++....+......+|..+...-.+..+... ..|.||||.|+++|..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhhh
Confidence 3459999999999999999999888887766666666554444443211 25999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHH-HHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
+..+++.|+++|||+|++.--.-..... |..++ ..++|.++|.||+|+...|....
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~-------------------- 134 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST-------------------- 134 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH--------------------
Confidence 9999999999999999987322211111 22233 24689999999999964321100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCccee-EEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~-iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.....|... ..+| ++++||+.+.||.+.|..|...+...
T Consensus 135 ----~~a~~fa~~--------------~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 135 ----EEAQEFADE--------------LGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ----HHHHHHHHh--------------cCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 000112111 1235 99999999999999998887655443
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=135.41 Aligned_cols=154 Identities=21% Similarity=0.189 Sum_probs=111.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.++|||..|+|||.||-+++...++.-...+|..+.|+..+.++... ..|+||||.||+.|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 37899999999999999999888877666777778887776654321 2499999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+++.+-+||||+|+...-+-..+.+| ++....|.-|+++.||+|+... ..+ ..
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r------R~V-----------s~----- 131 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR------REV-----------SK----- 131 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc------ccc-----------cH-----
Confidence 999999999999999873332222222 2222356789999999999631 011 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+--....++| ++++.+||.|++||.+.|..+..
T Consensus 132 -EEGeaFA~ehg---------------LifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 132 -EEGEAFAREHG---------------LIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred -HHHHHHHHHcC---------------ceeehhhhhhhhhHHHHHHHHHH
Confidence 11111223344 46789999999999998876644
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=160.20 Aligned_cols=153 Identities=25% Similarity=0.343 Sum_probs=108.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
..|+++|++|+|||||+|+|++.+...|...|+|...-...+.. ....++|+|+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~----------------~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY----------------KGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe----------------cCceEEEEeCCCcCCCCCCC
Confidence 44999999999999999999999999999999997764444432 3345999999998776543
Q ss_pred -----Hhhc-c-CcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 905 -----RSRG-S-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 905 -----r~rg-l-~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
..+. + ..+|++|-|||+.+ ++. .....-+|...++|+|+++|.+|....+. +
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-LeR-nLyltlQLlE~g~p~ilaLNm~D~A~~~G------i------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-LER-NLYLTLQLLELGIPMILALNMIDEAKKRG------I------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-HHH-HHHHHHHHHHcCCCeEEEeccHhhHHhcC------C-------------
Confidence 1122 2 35799999999976 222 23333456678999999999999852100 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.-....+-..| .+|+||+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~~~L------------------GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLSKLL------------------GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHHHHh------------------CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 00011111111 279999999999999999998876543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=137.22 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=104.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~--- 902 (1415)
+.|+|+|.+|+|||||+++|++...... +.++. +.+..+... ..+.. ...+.++||||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~-----~~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKR-----TPYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCc-----eeeec---CCCCCceEEeCCCCCcccCCH
Confidence 4599999999999999999997543211 11111 100000000 00000 012469999999975431
Q ss_pred --hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 903 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 903 --~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
-++..++..+|++|||.+ ..+......++..++..+.|+|+|+||+|+.. ++.............+...+.
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhccccccccHHHHHHHHH
Confidence 133445677898888754 45777777788888888999999999999952 111000000000011122222
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC--CCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~--tGeGI~dLl~~L~~l~~~~ 1037 (1415)
. .+...+...|+ ...+||.+|+. .+.|++.|.+.|...++..
T Consensus 143 ~---~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 143 D---NCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred H---HHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 22233333332 23589999999 7899999999888777643
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=137.54 Aligned_cols=161 Identities=21% Similarity=0.148 Sum_probs=107.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+-..|+++|..++|||.||.++....+.......|.++.-...+..+. ....+.||||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g--------------~~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG--------------KKIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC--------------eEEEEEEEEcccchhHHH
Confidence 344599999999999999999987766544433333332222221111 123599999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHH-HHHHHH---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef 979 (1415)
+...+++.++++|||+|+.+-..-..+. ++..+. ..++|+|+|.||+|+... +. +..+.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e~ 139 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKER 139 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHHH
Confidence 9999999999999999998733222211 222222 347999999999999520 00 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 980 ~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
++. ...++| ++++.+||++|.||.+.+..|...+..
T Consensus 140 ge~------lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 GEA------LAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHH------HHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 111 112222 689999999999999998887765443
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=152.88 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCcc-----hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--CceEEEEEecccccCCccCC
Q 000570 888 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 888 ~~l~iIDTPGHe~-----F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~IVaINKiD~~~~w~~~~ 960 (1415)
.+|.||||||... +..++...+..+|++|||||+..++.+.....++.++..+ +|+|+||||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr----- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR----- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc-----
Confidence 4699999999432 3445667889999999999999998888888999998877 599999999998531
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVT-QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~v~~ef~~~l~~I~~-~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+... .+...+. .|...++ ....||||||++|.|+..|+..|..
T Consensus 305 eeddkE---------------~Lle~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDAD---------------QVRALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHH---------------HHHHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111111 1111221 2222221 2347999999999999999998875
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=153.10 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=110.6
Q ss_pred ccCCC-ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 822 NLRSP-ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~lR~p-iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.+|.. .|+|+|.+|+|||||||+|++...+ .....|+|.++---++. +++..+.|+||.|..
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~----------------i~G~pv~l~DTAGiR 276 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN----------------LNGIPVRLVDTAGIR 276 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE----------------ECCEEEEEEecCCcc
Confidence 34544 3999999999999999999987654 34456777776544443 334469999999954
Q ss_pred chhhH-------Hh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhh
Q 000570 900 SFTNL-------RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 900 ~F~~l-------r~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.-... |. ..+..||++|||+|+++++..+....+. +...+.|+|+++||+|+...|..
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------- 342 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------- 342 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc-------------
Confidence 32222 22 3456799999999999988877777777 55667899999999999743210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
. .+ . +....+++++||+||+||..|...|..++.
T Consensus 343 ------------~----~~-~-------------~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 ------------E----SE-K-------------LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ------------c----hh-h-------------ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 00 0 012348999999999999999998876553
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-12 Score=141.17 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F----- 901 (1415)
.|+|+|++++|||||+++|++.....+...+.|.++....+ .+....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~----------------~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVL----------------EYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEE----------------EECCeEEEEEECCCcccccccch
Confidence 48999999999999999999875443333333322211111 122345899999997543
Q ss_pred --hhHHhhccCcccceEEEEeccC
Q 000570 902 --TNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 902 --~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
.......++.+|++|+|+|+.+
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 2334567888999999999865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=141.80 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=78.2
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
..+.+|+|+|++|+|||||++.|++..... .+....|.+.+. ......++|+||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i~---------------~~~~~~i~~vDtPg~~--- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITVV---------------TGKKRRLTFIECPNDI--- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEEE---------------ecCCceEEEEeCCchH---
Confidence 344569999999999999999998641110 000011110000 0123469999999975
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEE-EEEecccc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 953 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiD~~ 953 (1415)
......+..+|++|||+|+..|+..++..++..+...++|.+| |+||+|++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 2334456889999999999999999999999999999999654 99999986
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=133.82 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=91.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.|+|||||+.+++...+..... + ..+.+... ..+.. ....+.||||+|...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~---~-~~~~~~~~--------i~~~~----~~~~l~i~D~~g~~~~----- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES---P-EGGRFKKE--------VLVDG----QSHLLLIRDEGGAPDA----- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC---C-CccceEEE--------EEECC----EEEEEEEEECCCCCch-----
Confidence 48999999999999999988665432211 1 01111100 00000 0124899999999753
Q ss_pred hccCcccceEEEEeccCCCChhHH-HHHHHHHh----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+.+..+|++|||+|+++--.-+.. .++..+.. .++|+|||.||+|+... +...+ ...
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~~--- 122 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DDA--- 122 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CHH---
Confidence 234568999999999885544443 22333332 35799999999997310 00000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
....|... ...+++++|||++|.||.+++..+..
T Consensus 123 ----~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 123 ----RARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred ----HHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 01112211 02368999999999999999988764
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=131.02 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=110.0
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.-...|.|+|..|+|||+||-++....+.......|..++-...+.++..+ ..|.||||.|++.|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhh
Confidence 344569999999999999999999887776655555555544444433322 359999999999999
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-HHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++..+++.+-++|||+|+...-+-..+.+| ..+..+ ++-.++|.||||...+..
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~-------------------- 134 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV-------------------- 134 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc--------------------
Confidence 9999999999999999999874433333443 233333 356678999999842100
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.-.+.|+..... ..+-|+.+||+|.+||...+..|+.-
T Consensus 135 -----------V~reEG~kfAr~-------h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 135 -----------VDREEGLKFARK-------HRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -----------ccHHHHHHHHHh-------hCcEEEEcchhhhccHHHHHHHHHHH
Confidence 001112211111 23679999999999999999887653
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=127.05 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=75.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc------
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~------ 900 (1415)
|+|+|.+|+|||||+++|++.+. ..+...+.|++.....+.+ ....+.|+||||...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----------------NNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----------------TTEEEEEEESSSCSSSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----------------ceeeEEEEeCCCCcccchhhH
Confidence 89999999999999999997643 3344455565552222222 223478999999643
Q ss_pred ---hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEe
Q 000570 901 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 901 ---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINK 949 (1415)
+.....+.+..+|++|+|||+.+....+....++.|+ .+.|+|+|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2223445558899999999988855555667777786 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=135.04 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=69.7
Q ss_pred ceeEEeCCCCCHHHHHH-HHHcCccccccc-CceeEeece---eEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 827 ICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd-~L~~t~v~~gea-gGITq~iga---~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.|+|+|+.++|||||+. ++.+..+..+.. .....++|. +.............+ .-....|.||||+|++.+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~----~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV----DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee----CCEEEEEEEEeCCCChhh
Confidence 49999999999999996 554433321110 111122221 100000000000000 011235999999998753
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHH--HHHHHHh--cCCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiD~~ 953 (1415)
++...++.+|++|||+|+.+...-+... ++..++. .++|+|||.||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556788999999999998744333332 2333433 368999999999985
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=133.64 Aligned_cols=174 Identities=22% Similarity=0.177 Sum_probs=110.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..|+|||||+++|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999988877655555443333222211100 1248999999999999999
Q ss_pred hhccCcccceEEEEeccC--CCChhHHHHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
..+...++++|+|+|... ....-+..++..+... ++|+|++.||+|+...+ .....+..+ +.
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~------~~~~~~~~~-------~~ 138 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ------SSSEEILNQ-------LN 138 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch------hHHHHHHhh-------hh
Confidence 999999999999999985 3444455555555553 48999999999996421 111111000 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCC--CCCChhhHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~--tGeGI~dLl~~L~~l~~~ 1036 (1415)
.....+....+... .......++.+|+. ++.||..++..++..+..
T Consensus 139 ----~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 139 ----REVVLLVLAPKAVL------PEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ----cCcchhhhHhHHhh------hhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 00000000000000 00012238899999 999999999888776643
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=125.43 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=107.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|...|.|+|..|+|||||+.+|.+.... +|...+|+-.-. ..++...|+|||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 3455999999999999999999875422 232233321111 124456799999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC-ChhHHHHHHHH----HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+..++..+|++|+|||..+.. +..+...|..| +..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999997743 34455555444 346789999999999963210
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...|...|.-..+ .. ...+++|-+||.||+++..-+.||+.-+
T Consensus 135 ----~~~i~~~~~L~~l-----~k----s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 135 ----LEEISKALDLEEL-----AK----SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ----HHHHHHhhCHHHh-----cc----ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 0111111110001 00 2457999999999999888888776543
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=135.59 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=116.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
...+.+|.|||.+|+|||||+|+|..+++..-. ++|++.-+.... ...+....++||||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345555779999999999999999977665322 222222111110 0123346799999999876
Q ss_pred ------hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHh--cCCceEEEEEecccc---cCCccCCChhHHHHHH
Q 000570 901 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDRL---YGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 901 ------F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~--~~vP~IVaINKiD~~---~~w~~~~~a~~~~~l~ 969 (1415)
+..+....+...|++++++++.+..-......|+.+.. .+.|+|++||.+|+. ++|....+.+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~---- 176 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP---- 176 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH----
Confidence 67777778888999999999998776666777766554 346999999999984 457654433321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.+.+.+..+...+...+. ..-||+.+|+..++|+..|+..|+..++
T Consensus 177 ----a~~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ----AIKQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 112222223333322222 1248999999999999999999887654
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=142.71 Aligned_cols=154 Identities=25% Similarity=0.301 Sum_probs=99.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc----
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe---- 899 (1415)
.-|.|+++|.+|+|||||+|+|++..+.... ++.+|-.|+.. ...+ ..+..++|.||-|+-
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d------~LFATLdpttR----~~~l-----~~g~~vlLtDTVGFI~~LP 255 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVAD------QLFATLDPTTR----RIEL-----GDGRKVLLTDTVGFIRDLP 255 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccc------cccccccCcee----EEEe-----CCCceEEEecCccCcccCC
Confidence 3466999999999999999999976554322 23333333211 1111 113569999999953
Q ss_pred -----chhhHHhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 900 -----SFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 900 -----~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
+|.... .-...+|++|+|||+++.. ..|-..+...|... .+|+|+|+||||++.+ ..
T Consensus 256 ~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------- 321 (411)
T COG2262 256 HPLVEAFKSTL-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------- 321 (411)
T ss_pred hHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh-------
Confidence 343332 3456799999999999853 23333344555554 4799999999998731 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
+...+.. .....|++||++|+||..|+..|...++.
T Consensus 322 ---------------~~~~~~~---------------~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ---------------ILAELER---------------GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ---------------hhhhhhh---------------cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0111110 00158999999999999999988776653
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=129.76 Aligned_cols=161 Identities=18% Similarity=0.169 Sum_probs=111.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+++|.+++|||-||.+++...+.......|...+....+.++. +.....||||.|++.|..+.+.
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccch
Confidence 89999999999999999998887766655555544333222221 1234899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHH-HHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~-E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
+++.+-+||||+|+....+-+.. .+|..|+. .++++++|.||+||..- ...+
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-raV~----------------------- 138 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-RAVP----------------------- 138 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-cccc-----------------------
Confidence 99999999999999874433322 22345554 47899999999999520 0000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1040 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e 1040 (1415)
.+--..|.+. ....++.+||+.+.|+...+..++..+-..+..
T Consensus 139 te~~k~~Ae~--------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 139 TEDGKAFAEK--------------EGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred hhhhHhHHHh--------------cCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 0111122221 235899999999999999998776655444433
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-11 Score=120.43 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=105.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|+.|+|||.|+.+++.+-+..|....|..+.-.-.+.+.. ....|.||||.|++.|..++.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g--------------ekiklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG--------------EKIKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC--------------eEEEEEEeeccchHHHHHHHH
Confidence 489999999999999999999888876544333222111111111 112499999999999999999
Q ss_pred hccCcccceEEEEeccCCCC----hhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~----~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.+++.++.+|||+|++.-.. |....-|..-...++--|+|.||+|+... ..+
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr----------rev-------------- 130 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR----------REV-------------- 130 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh----------hhh--------------
Confidence 99999999999999987433 33333333334456778899999998520 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
...+-..|.+. .+.-++.+||+..+|+..|+..+...+
T Consensus 131 p~qigeefs~~--------------qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 131 PQQIGEEFSEA--------------QDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hHHHHHHHHHh--------------hhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 11122233322 123467899999999999987765433
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=135.30 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=98.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch--
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 901 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-- 901 (1415)
-.|.|+|.|++|+|||||+.+|++..+.....+-+|..|..-+|. +.+..+.+|||||.-+-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe----------------~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE----------------RGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee----------------cCCceEEEecCCcccCCCh
Confidence 345599999999999999999998876554444445333332332 22345999999995432
Q ss_pred h--hH----Hhhcc-CcccceEEEEeccC--CCChhHHH-HHHHHH-hcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 902 T--NL----RSRGS-GLCDIAILVVDIMH--GLEPQTIE-SLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 902 ~--~l----r~rgl-~~aDiaILVVDa~~--Gv~~QT~E-~l~llk-~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
. |. ...++ .+.+++||++|.+. |....... .|..++ .++.|+|+|+||+|..+.|
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e-------------- 296 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE-------------- 296 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh--------------
Confidence 1 11 11222 34788999999864 55433222 233333 3457999999999987421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
.+..+...+...|. ...+-+|+..|.+++.+...+.......
T Consensus 297 -----------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 297 -----------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred -----------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 22333333433332 2345678888888887777766554433
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=120.50 Aligned_cols=165 Identities=20% Similarity=0.193 Sum_probs=113.0
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.+.|||...+|||+||-+.....++..-.+.+..+ |...++...+. -..+.||||.|++.|..++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-----FKvKTvyr~~k---------RiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-----FKVKTVYRSDK---------RIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-----EEEeEeeeccc---------EEEEEEEecccchhhhHHHH
Confidence 48999999999999999999887764332222222 11112111111 12499999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..++.+++.||++|+.+--.-...+.| -++ ...+.|+|+|.||||+... + +. .
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----R--------------vi-----s 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----R--------------VI-----S 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----e--------------ee-----e
Confidence 999999999999999874332222222 222 3457899999999999531 0 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~ 1043 (1415)
..+.+....+.| +.+|.+||+.+.||.+++..|+..+...|.+.+.
T Consensus 146 ~e~g~~l~~~LG---------------fefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLG---------------FEFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhC---------------hHHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 112222233334 3688999999999999999999988888877653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=127.15 Aligned_cols=111 Identities=22% Similarity=0.178 Sum_probs=80.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~- 903 (1415)
.|+|+|++|+|||||+|.|++..+.... ..|.|.++..+...+ .+..|+||||||..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4899999999999999999987654322 345665544333322 234699999999765521
Q ss_pred ------HH----hhccCcccceEEEEeccCCCChhHHHHHHHHHhc-C----CceEEEEEeccccc
Q 000570 904 ------LR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 954 (1415)
Q Consensus 904 ------lr----~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~----vP~IVaINKiD~~~ 954 (1415)
.. ......+|++|||+++.+ +.......+..++.. + .++||++|+.|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 11 123456899999999988 888888888777653 3 58999999999873
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=118.35 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=104.5
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
++|+|+.|+|||-||.++....+.+.....|..++|.-.+.+.. +...|.||||.|++.|......
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtRs 77 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTRS 77 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHHH
Confidence 89999999999999999998777655544555555554443322 2235999999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHH-H---HHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
+++.+-+++||+|+...-.-.....| . .|...++-+|++.||-|+-.. +.-.
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vt-------------------- 133 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVT-------------------- 133 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhh--------------------
Confidence 99999999999999874333332222 2 333456778889999998521 1100
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+....|.. ...+.+..+||+||+||.+.+-.+..
T Consensus 134 -----flEAs~Faq---------Enel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 134 -----FLEASRFAQ---------ENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -----HHHHHhhhc---------ccceeeeeecccccccHHHHHHHHHH
Confidence 111111111 12357899999999999987765543
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=130.50 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=80.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+......+|..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999877665433333222211111111000 000112489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHH-HHHHh----------------------cCCceEEEEEecccc
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 953 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----------------------~~vP~IVaINKiD~~ 953 (1415)
..++.+|++|||+|+++.-.-+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999885443333333 22221 258999999999986
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-11 Score=112.91 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=67.0
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+ ++.+.||||+|+.|.|++|+.+++ |++.++|.|+|.||++++++|.+|.+|++|||.|.+++ +|.
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~----------d~~ 77 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN----------DIK 77 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc----------cCC
Confidence 554 245789999999999999999997 88889999999999999999999999999999999875 688
Q ss_pred CCCeEEE
Q 000570 1373 IEDELVS 1379 (1415)
Q Consensus 1373 ~~d~l~s 1379 (1415)
.||+|.+
T Consensus 78 ~Gdvi~~ 84 (84)
T cd03692 78 VGDIIEA 84 (84)
T ss_pred CCCEEEC
Confidence 8998853
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=137.87 Aligned_cols=127 Identities=23% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCcchhhHHh------hccCc--ccceEEEEeccCCCChhHHHHHHHHH-----hcCCceEEEEEeccccc
Q 000570 888 PGLLVIDTPGHESFTNLRS------RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~------rgl~~--aDiaILVVDa~~Gv~~QT~E~l~llk-----~~~vP~IVaINKiD~~~ 954 (1415)
..+.||||||+..+...+. +.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432211 11222 89999999999988888877665543 57899999999999973
Q ss_pred CCccCCChhHHHHHHhhh---HHHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChh
Q 000570 955 GWKTCRNAPIVKAIKQQN---TDVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 955 ~w~~~~~a~~~~~l~~q~---~~v~~ef~~-------~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
.... ..+.... ..+...+.. -...+...+.. .+...++|++||.++.|+.
T Consensus 177 ------~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 ------EEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred ------chhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1111 1111111 111111110 01111112222 2234689999999999999
Q ss_pred hHHHHHHHHH
Q 000570 1025 DLLLLLVQWT 1034 (1415)
Q Consensus 1025 dLl~~L~~l~ 1034 (1415)
+|+.+|..++
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9999987655
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=131.82 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=92.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
-|+++|.+++||||||++|....-. .....++..+||..+.. . + ..|++-|.||.-.=
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd--d-------------f--~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD--D-------------F--SQITVADIPGIIEGAHM 260 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc--c-------------c--ceeEeccCccccccccc
Confidence 3889999999999999999876543 33334444556633221 1 1 13999999994211
Q ss_pred ----hhHHhhccCcccceEEEEeccCCC--C-hhHHH-HHHHHHhc-----CCceEEEEEecccccCCccCCChhHHHHH
Q 000570 902 ----TNLRSRGSGLCDIAILVVDIMHGL--E-PQTIE-SLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 902 ----~~lr~rgl~~aDiaILVVDa~~Gv--~-~QT~E-~l~llk~~-----~vP~IVaINKiD~~~~w~~~~~a~~~~~l 968 (1415)
--...|.+-.|++++||||++.+. . -|++. .+..|..+ ..|.+||+||||++.+ .
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e------- 328 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----E------- 328 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----H-------
Confidence 111223444599999999998872 2 22222 22333332 4699999999998521 0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 969 ~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 329 -----------~~~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 329 -----------KNLLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred -----------HHHHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 11122222222 1125999999999999999887643
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=120.07 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=106.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
.+|+|.+++|||+|+-+++...++......|..++-.-.++++.. ...|.||||.|++.|..+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~--------------~VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGD--------------RVKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCc--------------EEEEEEeecccHHHHHHHHHH
Confidence 689999999999999999987776544333333322222222211 135999999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhH-HHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLEPQT-IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.+.++++|+|+|...|-.-.. ..+|..++.. .+|-|+|.||.|... +.. +. -.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----Rrv-----V~-------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRV-----VD-------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----cee-----ee-------------hH
Confidence 9999999999999998765433 3444444432 479999999999863 110 00 00
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
........ ..+.+|.+||+...|+..++..|..+.
T Consensus 134 dAr~~A~~---------------mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 134 DARAFALQ---------------MGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHHHHHh---------------cCchheehhhhhcccchHHHHHHHHHH
Confidence 11111112 236799999999999999988776544
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=132.63 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=76.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccccccc----------CceeEeeceeEecccccceeeeecccccccCCCCEEEEeC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 895 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~gea----------gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDT 895 (1415)
..|+|+|+.|+|||||+++|++..+..... .+++.+.....+.... ....|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g--------------~~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG--------------VKLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC--------------EEEEEEEEec
Confidence 358999999999999999999877653321 1111111111111110 0024999999
Q ss_pred CCCcchhhH--------------------------HhhccC--cccceEEEEecc-CCCChhHHHHHHHHHhcCCceEEE
Q 000570 896 PGHESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 946 (1415)
Q Consensus 896 PGHe~F~~l--------------------------r~rgl~--~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 946 (1415)
||+.++.+. |...+. .+|++|++++.. +++.+..++.+..+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997665331 101222 478889999876 5898999999999885 7999999
Q ss_pred EEecccc
Q 000570 947 LNKVDRL 953 (1415)
Q Consensus 947 INKiD~~ 953 (1415)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999996
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-11 Score=117.93 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=69.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc----ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~----~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.|+|+|+.|+||||||++|.+.... .....+.+..+....+... ...+.|+|++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD----------------RQSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE----------------EEEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC----------------ceEEEEEecCccceec
Confidence 3899999999999999999977655 1112222222211111111 1138999999999888
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHH-------HHHHh--cCCceEEEEEecc
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-------NLLKM--RNTEFIVALNKVD 951 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l-------~llk~--~~vP~IVaINKiD 951 (1415)
......+..+|++|||+|+.+ +.+...+ ..+.. .++|+|||.||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSD---PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCG---HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCC---hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 766666888999999999987 4444332 22322 4599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=125.03 Aligned_cols=155 Identities=25% Similarity=0.237 Sum_probs=108.7
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|--++||||+|.+|....+... ...||.. ++. +.|++..+++||..|+..+..++.
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfn---VE~-----------v~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFN---VET-----------VEYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-----CCccccc---eeE-----------EEEcceEEEEEecCCCcccccchh
Confidence 399999999999999999976554321 1222211 111 124445699999999999999999
Q ss_pred hccCcccceEEEEeccCCCC-hhHHH-HHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLE-PQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~-~QT~E-~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
.++..++++|||||..+-.. +.+.+ ...++.. .++|++|+.||.|+.+..
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------- 134 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------- 134 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------------------------
Confidence 99999999999999987421 22333 3333332 468999999999997421
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+|...|....+.. ....+-.++|.+|+|+.+-+++|...+.
T Consensus 135 s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1234445555444432 3346889999999999999999876543
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=135.25 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=81.8
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
......|+|||+.++|||||+.+|.+..+......+|..++....+.+.........+... ......|.||||+|++.|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhh
Confidence 3445569999999999999999999876654333333222211111111000000000000 001124899999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHH----HHHHhc---------------CCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMR---------------NTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~---------------~vP~IVaINKiD~~ 953 (1415)
..++...++.+|++|||+|+++ ..+.+.+ ..+... ++|+|||.||+|+.
T Consensus 97 rsL~~~yyr~AdgiILVyDITd---r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQ---RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 9999999999999999999987 3343332 333321 48999999999985
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-11 Score=123.25 Aligned_cols=161 Identities=23% Similarity=0.224 Sum_probs=105.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-ccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
.|+|+|.-++||||||.++-..-. .-+.. .-||..+|...- ...+.+..|.|||..|++....
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--------------~i~v~~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--------------TIEVCNAPLSFWDLGGQESLRS 84 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--------------ceeeccceeEEEEcCChHHHHH
Confidence 389999999999999999853221 11111 113333322110 1112234599999999999999
Q ss_pred HHhhccCcccceEEEEeccCC--CC---hhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHG--LE---PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~G--v~---~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++..++..|+++|+|||+.+. ++ .+-...+..=...++|+++.+||-|+.. +--
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~~-------------- 143 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AME-------------- 143 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hhh--------------
Confidence 999999999999999999873 21 1112223333456899999999999852 100
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+..+.... + + ...+++++.||||++|+||.+-+.|++..+.
T Consensus 144 -~~El~~~~~~~-e--~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 144 -AAELDGVFGLA-E--L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred -HHHHHHHhhhh-h--h---------cCCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 01122222221 1 1 2346789999999999999999999886554
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=124.56 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+.+.|+|+|+.|+|||+|+..|.+....... ..+...+ ++.+ ..-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~-~~~~---------------~~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENNI-AYNV---------------NNSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEE-ECCG---------------SSTCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCCc-eEEe---------------ecCCCCEEEEEECCCcHHHHH
Confidence 3567999999999999999999876332111 0011111 0111 011235699999999998876
Q ss_pred HHhh---ccCcccceEEEEeccCCCChh---HHHHHH-HH---H--hcCCceEEEEEecccc
Q 000570 904 LRSR---GSGLCDIAILVVDIMHGLEPQ---TIESLN-LL---K--MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 904 lr~r---gl~~aDiaILVVDa~~Gv~~Q---T~E~l~-ll---k--~~~vP~IVaINKiD~~ 953 (1415)
.... .+..+-++|||||+.. +..+ +.++|. +| . ..++|++||+||.|+.
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 5444 3778999999999864 2222 223321 11 1 2468999999999996
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=128.23 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=100.6
Q ss_pred eeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+++|.+++||||||+++.... +..+...+++..+|...+.. ...++|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-----------------~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-----------------GESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-----------------CCcEEEecCcccccccccC
Confidence 8899999999999999998765 44555555556666655421 13599999999321
Q ss_pred --hhhHHhhccCcccceEEEEeccCCC--C-hhHHHHH-HHHHhc-----CCceEEEEEecccccCCccCCChhHHHHHH
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMHGL--E-PQTIESL-NLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~Gv--~-~QT~E~l-~llk~~-----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
.-.-..|.+..|-++|+|||++.-- . .+.+..| ..|..+ +.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 0111223444589999999997432 1 2333333 344443 5799999999997521
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHH
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 970 ~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l 1038 (1415)
.+.+..+...|.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 112222333333221 1123334999999999999999988887654
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=117.65 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=105.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
++++|-.++|||||++.+..+.+... +..+.|+....+. -....|.+||.||+..|..|+.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~t--------------kgnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVT--------------KGNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEec--------------cCceEEEEEecCCCccHHHHHHH
Confidence 78999999999999998865433211 2223333322211 11235899999999999999999
Q ss_pred ccCcccceEEEEeccCCC-ChhHHHHH-HHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGL-EPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv-~~QT~E~l-~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
+.+.|+++|+|||+.+.- -+..+.-| .+|.. .++|++|..||+|+.+. |..
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~------------ 140 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA------------LSK------------ 140 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc------------ccH------------
Confidence 999999999999998721 12333333 33332 46899999999999642 100
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+ ..+.||..- ....+.++.||++.-.||+-+++||+...
T Consensus 141 -~~l---i~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 -IAL---IERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred -HHH---HHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 112 223344321 13568999999999999999999998754
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-10 Score=116.62 Aligned_cols=158 Identities=22% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
++.|+++|..=+|||+|+-++....+....... .+ +.|... .++ ..-.-..|+||||.|++.|..+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsT--lQ--ASF~~k--------k~n--~ed~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLST--LQ--ASFQNK--------KVN--VEDCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHH--HH--HHHhhc--------ccc--cccceeeeeeeeccchHhhhcc
Confidence 345899999999999999988766554221111 11 111110 000 0001135999999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH-HHHH-hcC--CceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MRN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l-~llk-~~~--vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
-.-+++.+|++|||+|+.+.-.-|-...| ..|+ +++ +.++||.||||+... + .+ ..
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R------~V------t~---- 138 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R------QV------TR---- 138 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h------hh------hH----
Confidence 99999999999999999987666665555 2333 333 689999999998521 0 00 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.......... ...++.+||+.+.||.+||..|...+
T Consensus 139 ---qeAe~YAesv---------------GA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 139 ---QEAEAYAESV---------------GALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred ---HHHHHHHHhh---------------chhheecccccccCHHHHHHHHHHHH
Confidence 0000001111 13578999999999999998876543
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=124.58 Aligned_cols=160 Identities=19% Similarity=0.130 Sum_probs=105.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+++|..|+|||+|+-++++..+.....+.|- +.. .+...+. -....|.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y----------~k~~~v~----~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSY----------RKELTVD----GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccc----------eEEEEEC----CEEEEEEEEcCCCcccChH
Confidence 445699999999999999999998776654333332 111 1111111 1123588999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHH-HHHH-H---hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-l~ll-k---~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
|+..++...|+.|||+++++--.-+.... +.++ + ...+|+|+|.||+|+... +.-+ .+
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~-------------~e 129 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVS-------------EE 129 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccC-------------HH
Confidence 99999999999999999988433222211 1222 2 234799999999999631 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
-+. .| ... -.++++.+||....+|.++|..|+..+..
T Consensus 130 eg~-------~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 130 EGK-------AL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHH-------HH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 000 11 111 12679999999999999999998876543
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=127.92 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=87.2
Q ss_pred cCCCCcccccccCCCce-eEEeCCCCCHHHHHHHHHcC--ccc-ccccCceeEeeceeEecccccceeeeecccccccCC
Q 000570 812 VDATPKQAEENLRSPIC-CIMGHVDTGKTKLLDCIRGT--NVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 812 ~~~~~~~~~~~lR~piV-~IlGhvdaGKTTLLd~L~~t--~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
..++-.+++..+.+|.| +|||++|+|||||+..|... ... ....|.||.-.| +.
T Consensus 55 hVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg----------------------K~ 112 (1077)
T COG5192 55 HVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG----------------------KT 112 (1077)
T ss_pred ccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec----------------------ce
Confidence 34566677777777765 59999999999999988632 111 112233443222 12
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEE-EEEeccccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRLY 954 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiD~~~ 954 (1415)
+.|+|+.+| .+. +.+...+..+|++||+||++-|+.-.|.+.|++|...+.|.|+ |++.+|+..
T Consensus 113 RRiTflEcp--~Dl-~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 113 RRITFLECP--SDL-HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eEEEEEeCh--HHH-HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 459999999 333 3444567889999999999999999999999999999998665 899999963
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-10 Score=129.59 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=60.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEecc----cccceeeeecccc---cccCCCCEEEEeCCCC
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPA----ENIRERTRELKAN---ATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~----~~i~~~t~~v~~~---~~~~~~~l~iIDTPGH 898 (1415)
|+|+|.+++|||||+++|++..+......+.| ..+|..+++. ..+...+. .... ..+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCN-PRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhc-ccccccccCcCcceEEEEECCCC
Confidence 68999999999999999998776544444444 5666666532 11111110 0000 0112235999999996
Q ss_pred ----cchhhHHh---hccCcccceEEEEecc
Q 000570 899 ----ESFTNLRS---RGSGLCDIAILVVDIM 922 (1415)
Q Consensus 899 ----e~F~~lr~---rgl~~aDiaILVVDa~ 922 (1415)
..+..+.. ..++.||++|+|||+.
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 44554433 3588899999999996
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-10 Score=130.64 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.+.|+|+|.+|+|||||||+|.+..+. .+...|+|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 355999999999999999999987654 45667777775444433 3456799999999644
Q ss_pred -----hhhHHh-hccCcccceEEEEeccCCCChhHHHHHHHHHhc------------CCceEEEEEecccccCCccCCCh
Q 000570 901 -----FTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 901 -----F~~lr~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~------------~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
..-+|. ..+..+|+++||||++.+...+.....+.|... ..|+|+++||+|+.......+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 222222 456779999999999998887777666655432 25889999999987432111111
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEE-eCCCCCCCChhhHHHHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIV-PTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iV-pvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
++ .|.....++.++++ .+|++|++|+..|...|...+
T Consensus 412 ~~-----------------------------------~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV-----------------------------------VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce-----------------------------------eccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 10 00001112344544 499999999999998876543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-10 Score=129.46 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
.+..++||||+|...-... .+..+|++|||++...|..-|.... . ...+..|||+||+|++.. ...
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~-g---i~E~aDIiVVNKaDl~~~------~~a- 212 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK-G---IMELADLIVINKADGDNK------TAA- 212 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh-h---hhhhhheEEeehhcccch------hHH-
Confidence 3467999999997622211 3567999999987555544444321 0 122234899999999731 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
...+..+...|.... .. ..+...||++|||++|.||++|+..|..+++
T Consensus 213 --------------~~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 --------------RRAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------------HHHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 011112222222110 00 0012258999999999999999999988765
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-10 Score=126.82 Aligned_cols=133 Identities=19% Similarity=0.287 Sum_probs=67.1
Q ss_pred CEEEEeCCCCcchhhHHhhcc--------CcccceEEEEeccCCCChhHHHHH-----HHHHhcCCceEEEEEecccccC
Q 000570 889 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 955 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl--------~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiD~~~~ 955 (1415)
.+.|+||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ..+...++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999988776655443 334468899999876666555433 2233468999999999999742
Q ss_pred CccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 956 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 956 w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+ ..+.-........+...+......+...+... -.+++...+++|+|+.+++|+..|+..+-..++
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 1 11111111111111111110111222222111 013344448999999999999999988766543
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=117.69 Aligned_cols=109 Identities=21% Similarity=0.135 Sum_probs=75.4
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHH-HHHHHH-Hh--cCCceEEEEEecccccCCccCCChhH
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~-E~l~ll-k~--~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.|.||||||++.|..++...++.+|++|||+|+++...-+.. .++..+ .. .++|+|||+||+|+... .....
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVTY 105 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCCH
Confidence 589999999999999999999999999999999884332222 233323 22 35799999999998521 00000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
.......... .+.++++||++|.||.+++.+|...++
T Consensus 106 -------------------~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 -------------------EEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred -------------------HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0011111111 146899999999999999999886553
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-10 Score=109.74 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=95.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC----Ccchh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----He~F~ 902 (1415)
.|++||.+|+|||||+++|++..+.... ||-+ .|+ .=..||||| |..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK----TQAv---------------------e~~--d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK----TQAV---------------------EFN--DKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc----ccee---------------------ecc--CccccCCchhhhhhhHHH
Confidence 3899999999999999999875443211 2211 111 123699999 44443
Q ss_pred hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 903 ~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
.-....+..+|++++|-.++++.++ -.-.++.....|+|-+++|+|+.. ...
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae-------------------------d~d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE-------------------------DAD 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc-------------------------hHh
Confidence 3344456678999999999985432 233445556678999999999962 123
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
+..+...|.+.| --+||.+|++...||.+|+..|..
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 455666777776 238999999999999999988764
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=119.26 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=84.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeec-----------eeEecccc--------cc----eeee-
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-----------ATYFPAEN--------IR----ERTR- 877 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~ig-----------a~~~~~~~--------i~----~~t~- 877 (1415)
.+..|.|+|+|+.++||||||++|.+..+.....|.+|.... +.++.... +. ..+.
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 367788999999999999999999986532222233331111 11110000 00 0000
Q ss_pred ------eccc-----cc-ccCCCCEEEEeCCCCcch-------------hhHHhhccCc-ccceEEEEeccCCCChhH-H
Q 000570 878 ------ELKA-----NA-TLKVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 930 (1415)
Q Consensus 878 ------~v~~-----~~-~~~~~~l~iIDTPGHe~F-------------~~lr~rgl~~-aDiaILVVDa~~Gv~~QT-~ 930 (1415)
.+.. .. .-..+.|+||||||.... ..+...++.. .+++|+|||+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 0000 00 012367999999997522 2345566664 569999999999998877 5
Q ss_pred HHHHHHHhcCCceEEEEEecccc
Q 000570 931 ESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 931 E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
+..+.+...+.|+|+|+||+|.+
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 78888888999999999999997
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=120.55 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=55.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-cchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH-e~F~~lr 905 (1415)
.|+++|.+++||||||++|+++.... +.|.|.+-. .+.....|++..|.|+|+||. +.++.-+
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~sev----------a~y~FTTl~------~VPG~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEV----------ADYPFTTLE------PVPGMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccc----------cccCceecc------cccceEeecCceEEEEcCcccccCcccCC
Confidence 39999999999999999999875433 333332111 123344577778999999994 3333333
Q ss_pred ------hhccCcccceEEEEecc
Q 000570 906 ------SRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 906 ------~rgl~~aDiaILVVDa~ 922 (1415)
...++.||++|+|+|+.
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVF 151 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecC
Confidence 33467799999999986
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=120.67 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=89.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-------cccccC-cee----EeeceeEecccccceeee---ec---cccccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-------QEGEAG-GIT----QQIGATYFPAENIRERTR---EL---KANATL 885 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-------~~geag-GIT----q~iga~~~~~~~i~~~t~---~v---~~~~~~ 885 (1415)
..|+|+|+|+.|+|||||+++|+.... ..+..+ ++. .+.|+..+......-.+. .+ ......
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 456799999999999999999975311 011110 000 000110000000000000 00 000111
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
..+.+.||+|.|.-... .......++.|+|||+.++...+. ......+.|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 24579999999932111 111223566788999987654322 2223356789999999999631 0000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
+..+...+... ...+|++++||++|.||..|+.++..+
T Consensus 168 -----------------~~~~~~~l~~~-------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKI-------------NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHh-------------CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11122222221 123689999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=110.32 Aligned_cols=158 Identities=24% Similarity=0.232 Sum_probs=103.7
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|--.|.|||-.|+||||++-++--.++... -..||. ..+ ++.|++-.+.+||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigf---nve-----------~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGF---NVE-----------TVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCc---Ccc-----------ccccccccceeeEccCcccccH
Confidence 334489999999999999887754443311 011111 111 1234445699999999999999
Q ss_pred HHhhccCcccceEEEEeccCCC--ChhHHHHHHHHHh---cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv--~~QT~E~l~llk~---~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
++.-++..+|.+|+|||..+-- ...-.+...+|.. .+.-++|++||+|..+.
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~----------------------- 134 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA----------------------- 134 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-----------------------
Confidence 9999999999999999997632 2222333334432 45678999999998641
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
....++...|..+.|. ...+.||.+||.+|+|++..++||..-++
T Consensus 135 --~t~~E~~~~L~l~~Lk----------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 135 --LTRSEVLKMLGLQKLK----------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred --hhHHHHHHHhChHHHh----------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0011222222111111 13479999999999999999999876543
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=107.51 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=102.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.+.|+|..-+|||+||..++.+.++.-..+.+..+..+-.+.... .. -..|.+|||.|++.|..++.
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~p----------g~---riklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRP----------GY---RIKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCC----------Cc---EEEEEEeeccchHHHHHHHH
Confidence 378999999999999999998777654333332222211111110 00 12489999999999999999
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHH-HHHh-----cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
.+++++=+++||+|+++.-.-...+.|- .+.+ .++-|.+|..|+|+... +.-+
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt----------------- 135 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVT----------------- 135 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----cccc-----------------
Confidence 9999999999999998733322222221 1111 12447889999999621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~ 1037 (1415)
..+--.....+| +.+|.+||++|.||.+-+..|.+.+...
T Consensus 136 --~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 136 --AEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred --HHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 001111122232 5799999999999999998887655443
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-09 Score=111.77 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+.|.++|..|+|||+|+-.|+...+... ...|....+.+. +....+++||.|||.+...-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r------------------~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYR------------------LGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEe------------------ecCcceEEEeCCCcHHHHHHH
Confidence 3499999999999999999987633211 011111112221 122348999999998875544
Q ss_pred hhccC---cccceEEEEeccCCCC--hhHHHHH-HHHH-----hcCCceEEEEEecccccCCccCCChhHHHHHHhhhHH
Q 000570 906 SRGSG---LCDIAILVVDIMHGLE--PQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 906 ~rgl~---~aDiaILVVDa~~Gv~--~QT~E~l-~llk-----~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
...+. .+-.+|||||+..-.. ..+-+.+ ..|. ..++|++|+.||.|+... .+. +.+.+|
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA---kt~----~~Ir~~--- 169 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA---KTA----EKIRQQ--- 169 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc---CcH----HHHHHH---
Confidence 43333 6889999999864211 1122222 2222 345799999999999632 122 222222
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCchhhhh-------ccc-----CCC-cceeEEeCCCCCCCChhhHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLK-EQGMNTELYY-------KNK-----DRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~-e~gl~~e~~~-------~~~-----~~g-~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
++..+..++..-. ...++.+-+- ... ++. ..+.|.+.|+++| +|.++..||..
T Consensus 170 ----LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 170 ----LEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ----HHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 2222222221111 0001111110 111 222 5688999999999 78888877754
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=105.43 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=102.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+.+|-.++||||||-+|....... ++..+|+. ++ .+.|++..+++||..|+.....++.+
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFn---ve-----------tVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFN---VE-----------TVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCcc-----ccccccee---EE-----------EEEeeeeEEeeeeccCchhhhHHHHh
Confidence 8899999999999999997543211 11222211 11 11244456999999999999999999
Q ss_pred ccCcccceEEEEeccCC--CChhHHHHHHHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
++..+-++|||||+.+. +...-.|.-.++ .+..+|++|..||.|+....+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------------------------- 135 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------------------------- 135 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------------------------
Confidence 99999999999998764 222222332333 345689999999999974321
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+|...|.-..+. +....+.|+||.+|.|+.+-|.+|.+.+
T Consensus 136 pqei~d~leLe~~r----------~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 PQEIQDKLELERIR----------DRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhcccccc----------CCccEeeccccccchhHHHHHHHHHhhc
Confidence 12233333211111 2345789999999999999888887643
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-09 Score=104.13 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=80.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
-.|+|..|+|||.||..++...+...-...|...+|...+.+..- ...|.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq--------------kiklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ--------------KIKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc--------------EEEEEEeecccHHHHHHHHHH
Confidence 578999999999999999877665544444544555443332211 124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHH-HHH---hcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~-llk---~~~vP~IVaINKiD~~ 953 (1415)
+++.+-.+++|+|+....+.....+|. -++ ..++-++++.||.|+.
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 999999999999998744433333332 222 2355688899999985
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=107.99 Aligned_cols=155 Identities=24% Similarity=0.251 Sum_probs=106.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|-..|.++|--++||||||..|.+..+.. +|..-|+....+.. + ...+|++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~----------~---g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEY----------D---GTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEee----------c---CcEEEEEEecCCccccch
Confidence 44458999999999999999998765542 44444433222111 1 114699999999999999
Q ss_pred HHhhccCcccceEEEEeccCC--CChhHHHHHHHH---HhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.+..++...|++|+|||..+- +.....++..++ +.+.+|+.|+.||.|++..
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta----------------------- 134 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA----------------------- 134 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh-----------------------
Confidence 999999999999999997763 222233333333 3466899999999999731
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
..+..+...|.-.|+.. ..+.|-.+||++++|+.+-+.++.
T Consensus 135 --a~~eeia~klnl~~lrd----------RswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 135 --AKVEEIALKLNLAGLRD----------RSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred --cchHHHHHhcchhhhhh----------ceEEeeeCccccccCccCcchhhh
Confidence 11223333333333321 356888999999999998887765
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-09 Score=109.23 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=102.4
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
+..+|..|+|||++|-+.+...+...- | ..+|..+-+...+...... .....-.-.+|.||||.|++.|..++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qF---I-sTVGIDFreKrvvY~s~gp-~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQF---I-STVGIDFREKRVVYNSSGP-GGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCccccee---E-EEeecccccceEEEeccCC-CCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 578999999999999887655443211 1 1122211111100000000 0000000124899999999999999999
Q ss_pred ccCcccceEEEEeccCCCC-hhHHHHHHHHHhc----CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHH
Q 000570 908 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~----~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 982 (1415)
..+.+-..||++|...--. -.++.+|.+|+.. +--+|++.||+|+..- ..+. .
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~----------R~Vs----------~-- 144 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ----------RVVS----------E-- 144 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh----------hhhh----------H--
Confidence 9999999999999976322 2234455555542 3358889999999620 0000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 983 l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~ 1041 (1415)
.+.......+| +|+|.+||-||.||..-++.|+.++-..|...
T Consensus 145 -~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 145 -DQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred -HHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 69999999999999988888777665555443
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-09 Score=119.14 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=99.3
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc--
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 899 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe-- 899 (1415)
....|+|+|+|.+|+|||||+++|+..++.... ++.++-.|+-. ...+ -.+..++|.||-|+-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h----~a~L-----psg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLH----SAHL-----PSGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhh----hccC-----CCCcEEEEeechhhhhh
Confidence 456789999999999999999999977765433 23333332211 0011 123358999999953
Q ss_pred -------chhhHHhhccCcccceEEEEeccCCCC-hhHHHHHHHHHhcCCc-------eEEEEEecccccCCccCCChhH
Q 000570 900 -------SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 900 -------~F~~lr~rgl~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~~vP-------~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
+|..... -...+|++|.|+|++|..- .|-...+..|+..++| +|=|-||+|...++.+
T Consensus 240 LP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------ 312 (410)
T KOG0410|consen 240 LPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------ 312 (410)
T ss_pred CcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------
Confidence 3443332 3456899999999999754 5555667788888885 5567778886532100
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ . ...|++||++|.|+.+|+..+-..
T Consensus 313 --------------------------------~E---------~-n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 313 --------------------------------EE---------K-NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred --------------------------------cc---------c-CCccccccccCccHHHHHHHHHHH
Confidence 00 1 127899999999999999887543
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=123.68 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=60.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCcee--EeeceeEeccc----ccceeeeeccc--ccccCCCCEEEEeCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAE----NIRERTRELKA--NATLKVPGLLVIDTPG 897 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT--q~iga~~~~~~----~i~~~t~~v~~--~~~~~~~~l~iIDTPG 897 (1415)
+.|+|+|.+++|||||+++|++..+......+.| ..+|..+++.. .+...+..... ...+....|.|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 3599999999999999999998877654444444 56666665332 11100000000 0011223589999999
Q ss_pred Cc----chhh---HHhhccCcccceEEEEecc
Q 000570 898 HE----SFTN---LRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 898 He----~F~~---lr~rgl~~aDiaILVVDa~ 922 (1415)
.. .+.. ...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2323 3334478899999999996
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=121.16 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHH
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 965 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~ 965 (1415)
..+.+.||||||...-. ...+..+|.+++|.....|-.-+. +.. ....+|.|||+||+|++.. ...
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~-~l~~~~~ivv~NK~Dl~~~------~~~- 190 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKA-GLMEIADIYVVNKADGEGA------TNV- 190 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHH-HHhhhccEEEEEcccccch------hHH-
Confidence 35679999999965222 224566888888865543322111 111 1246899999999999631 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 966 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 966 ~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. +...+. ..+.. +.. ....| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 ~~-------~~~~~~-------~~l~~--l~~----~~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 TI-------ARLMLA-------LALEE--IRR----REDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HH-------HHHHHH-------HHHhh--ccc----cccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 000000 00110 000 00012 24799999999999999999987753
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-09 Score=110.02 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=129.6
Q ss_pred cccccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 819 ~~~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..+--|.+.++|+|..++||||||.+++.+-+..+....| |..++.. .+ .+. .....+.+|||.|+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI----gvdfler-qi-----~v~----~Edvr~mlWdtagq 79 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----GVDFLER-QI-----KVL----IEDVRSMLWDTAGQ 79 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhcccccccccccc----chhhhhH-HH-----Hhh----HHHHHHHHHHhccc
Confidence 3344567779999999999999999999765544433333 3222211 00 111 11124789999999
Q ss_pred cchhhHHhhccCcccceEEEEeccCCCCh-hHHHHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 899 ESFTNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 899 e~F~~lr~rgl~~aDiaILVVDa~~Gv~~-QT~E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+.|-.+...+++.+...|||++..+...- .|.++.+-+.. ..+|.|+|-||||++.+ +-+.
T Consensus 80 eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~~---------- 143 (246)
T KOG4252|consen 80 EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQMD---------- 143 (246)
T ss_pred hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhcc----------
Confidence 99999999999999999999998874432 23333333322 45899999999999731 1000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEE-
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLE- 1054 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~~l~e~l~~~~~~~~~VlE- 1054 (1415)
...+..+...| ...++.+|++...|+..++..|..-+...+...++.+...+..-..
T Consensus 144 ----~~evE~lak~l------------------~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~ 201 (246)
T KOG4252|consen 144 ----KGEVEGLAKKL------------------HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNS 201 (246)
T ss_pred ----hHHHHHHHHHh------------------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCC
Confidence 01111222122 1356788999999999999998877766666656544332211111
Q ss_pred EEEEcCcceEEEEEEEeeEEccCCEEEEec
Q 000570 1055 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1084 (1415)
Q Consensus 1055 vk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g 1084 (1415)
.+... +..+..-..+++.++++|++.+
T Consensus 202 ~~sts---p~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 202 TYSTS---PPSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred CccCC---CCcceeeeeeeecCCceeeech
Confidence 01111 1222234467888888888754
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.6e-09 Score=109.26 Aligned_cols=64 Identities=31% Similarity=0.407 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcch----hhHHhhccCcccceEEEEeccCCCChhHHHHHHH-HHhcCCceEEEEEec
Q 000570 887 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKV 950 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F----~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~l-lk~~~vP~IVaINKi 950 (1415)
..++.||||||..+. ..++...+..+|++|+|+++.+.+..+....|.. +....-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999996442 3556677899999999999999887666555554 444555788999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.79 E-value=8e-08 Score=109.29 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=73.7
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccc-cccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~-geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
....+.|+|||.+|+|||||+|+|++..+.. +...+.|..+..+... +.+..|+||||||...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~----------------~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT----------------VDGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCc
Confidence 3455569999999999999999999876532 2223344443322221 2234699999999765
Q ss_pred hhh--H--------HhhccC--cccceEEEEeccC-CCChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 901 FTN--L--------RSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 901 F~~--l--------r~rgl~--~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
+.. . ..+.+. ..|++|+|..++. .+.......++.+.. ++ .++|||+|++|...
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 521 0 112232 4677777765543 344555556655543 33 47999999999863
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-08 Score=114.26 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=108.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCccc---ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC-
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 898 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~---~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH- 898 (1415)
-+.|-++++|..++|||+||+.|++.... .....|-||.|..+.+ +..++++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-------------------~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-------------------GKSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-------------------cceEEEEecCCcc
Confidence 45678999999999999999999865432 1114566776654433 235899999992
Q ss_pred ---------cchhhHHhhccC---cccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 899 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 899 ---------e~F~~lr~rgl~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
.+|.++...++- ..=-++|+||+.-++++.....|.+|-..++|+.+|+||||+.. ....
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k--~~~~------ 266 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK--KVKR------ 266 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh--hccc------
Confidence 234444333221 22346788999999999999999999999999999999999862 2110
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
....+...++..|. ++... .+.-..|++.+|+.|+.|++.|+-.|.+..
T Consensus 267 ~~kKp~~~i~~~f~-------------~l~~~------~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 267 TGKKPGLNIKINFQ-------------GLIRG------VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cccCccccceeehh-------------hcccc------ceeccCCceeeecccccCceeeeeehhhhh
Confidence 00011001111111 11111 122346888999999999999887776543
|
|
| >cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-08 Score=97.20 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=71.3
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
+++|+|++...|.|++++++|++|+|++||+|+++ ..+.+||+|+++.+. ..+++.+++++.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988753 346799999988752 2334455566665 4
Q ss_pred ccccc-cCCCceEEeCCCccHHHHHH
Q 000570 1129 GLEHA-IAGTGLYVVGPDDDLEDVKE 1153 (1415)
Q Consensus 1129 gL~~~-~aG~~~~v~~~e~~~~~~~~ 1153 (1415)
||+.. .+|+.|+++.++..+..+.+
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 88874 89999999999887766654
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=109.34 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce--EEEEEecccccCCccCCChhH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~--IVaINKiD~~~~w~~~~~a~~ 964 (1415)
...++||.|.|.. ...... ...+|.+|+|||+.+|...+.. . ..++.+ ++++||+|+... ...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~----~~~-- 155 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPM----VGA-- 155 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcccc----ccc--
Confidence 3568999999931 110001 1236889999999987663221 1 123344 999999999621 000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.+..+...+... + ...++|++||++|+||.+|+.+|..
T Consensus 156 -----------------~~~~~~~~~~~~--~-----------~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 156 -----------------DLGVMERDAKKM--R-----------GEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred -----------------cHHHHHHHHHHh--C-----------CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 112222233222 1 2468999999999999999998864
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-09 Score=104.36 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=96.1
Q ss_pred eEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhhc
Q 000570 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRG 908 (1415)
Q Consensus 829 ~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~rg 908 (1415)
.++|...+|||.||-++..+.+..+. ....+|..+ +...+. ..-....|.||||.|++.|...+..+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~---fistvgid~--------rnkli~--~~~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGN---FISTVGIDF--------RNKLID--MDDKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCceecCc---eeeeeeecc--------ccceec--cCCcEEEEEEeeccchHHHhhhhHhh
Confidence 36899999999999776554443322 111122111 101111 11112359999999999999999999
Q ss_pred cCcccceEEEEeccCCCChhHHHH-HHHHHhc---CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
++.+|..+||+|+.+...-..... |..+..+ .+.+.++.||+|+..... + ...-+.++
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v-------~~ddg~kl- 129 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------V-------KRDDGEKL- 129 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhc----------c-------ccchHHHH-
Confidence 999999999999987655444333 3444444 368889999999963210 0 00001111
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...+ .+|++.+||+||.|++--+-.|..
T Consensus 130 -----a~~y---------------~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 130 -----AEAY---------------GIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred -----HHHH---------------CCCceeccccccccHhHHHHHHHH
Confidence 1112 269999999999999776655543
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-08 Score=114.90 Aligned_cols=170 Identities=18% Similarity=0.261 Sum_probs=87.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccc-ccc-Cce---eEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEA-GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~-gea-gGI---Tq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
..|+|+|.+|+|||||+|+||+-.-.. +.+ .|+ |.....|.. .+.|.++|||.||...
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----------------p~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----------------PKFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------------------SS-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----------------CCCCCCeEEeCCCCCC
Confidence 349999999999999999999643221 111 122 222222211 1236799999999642
Q ss_pred --hh---hHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEeccc-ccCCccCCChhHHHHHHhhhHH
Q 000570 901 --FT---NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 901 --F~---~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~-~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
|. -+-..++...|++|+|.+ ..+.......+..++.++.||.+|-||+|. +++-.......|.+. +
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e--~---- 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEE--K---- 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HH--T----
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHH--H----
Confidence 32 223346778998777665 345666677778888899999999999997 221100111112110 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCC--CCChhhHHHHHHHHHH
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 975 v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t--GeGI~dLl~~L~~l~~ 1035 (1415)
+. ...-..++..|...|+. ..+||.||+.. ...++.|...|..-++
T Consensus 171 ~L---~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 171 LL---QEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HH---HHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HH---HHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11 11112344556555543 35788899875 4557777777765544
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=106.23 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccc-ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
....+.|+|||.+|+|||||+|+|++..+... ...+.|.+..... ..+.+..|+||||||..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------RTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE----------------EEECCeEEEEEECCCCCc
Confidence 35566799999999999999999998765321 1111111110000 012335699999999775
Q ss_pred hhhHHh-------hcc--CcccceEEEEeccC-CCChhHHHHHHHHHh-cC----CceEEEEEecccc
Q 000570 901 FTNLRS-------RGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 953 (1415)
Q Consensus 901 F~~lr~-------rgl--~~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~ 953 (1415)
...+.. ..+ ...|++|||+..+. .+.......+..+.. ++ .++||++|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 432211 111 24889999965543 344444555554443 22 4899999999976
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-08 Score=108.34 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhh
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|...+|||.||-.+....+.......+.-+ .+..+.++ +-....|.+|||.|+++|..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn-ys~~v~V~-------------dg~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN-YSANVTVD-------------DGKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc-ceEEEEec-------------CCCEEEEeeeecCCCccccc
Confidence 34559999999999999999887766655444443311 11111111 01112489999999999999
Q ss_pred HHhhccCcccceEEEEeccCCCChhHHHH-----HHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHH
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIES-----LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 904 lr~rgl~~aDiaILVVDa~~Gv~~QT~E~-----l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~ 976 (1415)
+|...+..+|++|+++++.. +++.+. +-.++. .++|+|+|.+|.|+.. +......|..+.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~---p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V 139 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVS---PESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV 139 (198)
T ss_pred ccccCCCCCCEEEEEEEcCC---hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc
Confidence 99889999999999998776 444433 222332 4699999999999952 2222222221100000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 977 ~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
. ...-. .|.. . -+-+.++.+||++..|+.+.++..+..
T Consensus 140 t-----~~~g~-~lA~------------~-iga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 T-----YEQGL-ELAK------------E-IGAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred c-----HHHHH-HHHH------------H-hCcceeeeehhhhhCCcHHHHHHHHHH
Confidence 0 00000 0111 0 134689999999999999998876543
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=113.43 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=86.6
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcc-------cccccCcee-----Eeec--eeEecccccceeee-ecc---cccc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNV-------QEGEAGGIT-----QQIG--ATYFPAENIRERTR-ELK---ANAT 884 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v-------~~geagGIT-----q~ig--a~~~~~~~i~~~t~-~v~---~~~~ 884 (1415)
....+|.|||.+|+||||||.+|++.-. ..+..+.+. ...| ...+....+..... .+. ....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 3466799999999999999998875311 111111100 0000 01111100000000 000 0111
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhH
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 964 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~ 964 (1415)
.....++||++-|.-..-.....+ .+.-|.|+++..|.. +.. .+-.++..+-||+|||+|++. ...
T Consensus 182 ~~~~d~liIEnvGnLvcPa~fdlg---e~~~v~vlsV~eg~d-kpl---Kyp~~f~~ADIVVLNKiDLl~------~~~- 247 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASFDLG---EKHKVAVLSVTEGED-KPL---KYPHMFAAASLMLLNKVDLLP------YLN- 247 (290)
T ss_pred hcCCcEEEEECCCCccCCCccchh---hceeEEEEECccccc-cch---hccchhhcCcEEEEEhHHcCc------ccH-
Confidence 223468899998841111111111 233457777777743 111 222344678899999999962 111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 965 ~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+..++..+... ....+||++||++|+|+..|+.||..
T Consensus 248 ----------------~dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 248 ----------------FDVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 1122233333322 13478999999999999999998865
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=112.22 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=62.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccc--eeeeecccccccCCCCEEEEeCCCCcc-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES- 900 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~--~~t~~v~~~~~~~~~~l~iIDTPGHe~- 900 (1415)
++..|+|+|.+++|||||+++|++..+..+..++.|.+.....+++...+ ..+ .+..........|.|+||||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~-~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLC-KHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHH-HHcCCcccCCCCeEEEECCCcCcC
Confidence 44559999999999999999999888877777777754433333332111 001 01001111123599999999431
Q ss_pred ------hhhHHhhccCcccceEEEEecc
Q 000570 901 ------FTNLRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 901 ------F~~lr~rgl~~aDiaILVVDa~ 922 (1415)
..+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344567799999999984
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=111.09 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=76.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC----cccc------------cccCc---eeEeeceeEecccccceeeeecccccccCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGG---ITQQIGATYFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t----~v~~------------geagG---ITq~iga~~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
.|+|+|++++|||||+++|... ++.. ....| +|.+. .++|... ..+...... .
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTeP--kfvP~kA-----vEI~~~~~~-~ 90 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEP--KFVPNEA-----VEININEGT-K 90 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCC--ccccCcc-----eEEeccCCC-c
Confidence 3899999999999999999987 4331 12233 11111 1222221 111111111 1
Q ss_pred CCEEEEeCCCCcc-------------------------hhhH----HhhccC-cccceEEEE-ecc------CCCChhHH
Q 000570 888 PGLLVIDTPGHES-------------------------FTNL----RSRGSG-LCDIAILVV-DIM------HGLEPQTI 930 (1415)
Q Consensus 888 ~~l~iIDTPGHe~-------------------------F~~l----r~rgl~-~aDiaILVV-Da~------~Gv~~QT~ 930 (1415)
..+.||||+|+.. |..- +...+. .+|++|||. |.+ ++......
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 3599999999532 1111 122344 799999999 775 45667778
Q ss_pred HHHHHHHhcCCceEEEEEeccc
Q 000570 931 ESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 931 E~l~llk~~~vP~IVaINKiD~ 952 (1415)
..+..|+..++|||+++|++|.
T Consensus 171 ~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 171 RVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHhcCCCEEEEEECcCC
Confidence 8899999999999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-07 Score=101.15 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=90.2
Q ss_pred eeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
|++||..++||||+...|.+...+ ....-|.|.++....+.. ...-.|+|||+||+..|...
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---------------~~~~~l~iwD~pGq~~~~~~~~ 66 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---------------LSFLPLNIWDCPGQDDFMENYF 66 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---------------TTSCEEEEEEE-SSCSTTHTTH
T ss_pred EEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---------------CCCcEEEEEEcCCccccccccc
Confidence 899999999999999998754322 111223343332222210 11235999999999887654
Q ss_pred ---HhhccCcccceEEEEeccCCCChhHH----HHHHHHHh--cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 905 ---RSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 905 ---r~rgl~~aDiaILVVDa~~Gv~~QT~----E~l~llk~--~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
+..-++.|.++|+|+|+...-....+ ..+..|.. .++.+.|+|+|||++. .+.+.
T Consensus 67 ~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~--------- 130 (232)
T PF04670_consen 67 NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDERE--------- 130 (232)
T ss_dssp TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHH---------
T ss_pred cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHH---------
Confidence 45567889999999999832222222 23334443 3578999999999973 22221
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
..|......+...+...+++ .+.++.||.+.. .|+.+....++
T Consensus 131 -~~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~----Sly~A~S~Ivq 173 (232)
T PF04670_consen 131 -EIFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE----SLYEAWSKIVQ 173 (232)
T ss_dssp -HHHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST----HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc----HHHHHHHHHHH
Confidence 22334445555566555432 478999998874 44554444443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-08 Score=109.64 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHH
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~ 966 (1415)
++.+.||-|-|...-... -...||++|||+-...|-.-|.+.. .++ .++=|+||||.|+.. +.
T Consensus 121 G~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gim---EiaDi~vVNKaD~~g-------A~--- 183 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKA-GIM---EIADIFVVNKADRPG-------AD--- 183 (266)
T ss_dssp T-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-T-THH---HH-SEEEEE--SHHH-------HH---
T ss_pred CCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhh-hhh---hhccEEEEeCCChHH-------HH---
Confidence 456899999985433222 2456999999999888877665432 111 135699999999752 11
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 967 ~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.....+...|....-. ...| ..||+.|||.+|.||++|++.|..+.
T Consensus 184 --------------~~~~~l~~~l~l~~~~------~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 184 --------------RTVRDLRSMLHLLRER------EDGW--RPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --------------HHHHHHHHHHHHCSTS------CTSB----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHhhcccc------ccCC--CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 1111222222211100 1112 36999999999999999999887654
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-08 Score=100.30 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=76.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.++++|--|+||||||..|-.......- -|.|...-.+. +.+-.++.+|..||..-...+.
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred eEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHHH
Confidence 4899999999999999999654332111 12222211111 2223588999999998888888
Q ss_pred hccCcccceEEEEeccCC-CChhHHHHHHHHH----hcCCceEEEEEeccccc
Q 000570 907 RGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~G-v~~QT~E~l~llk----~~~vP~IVaINKiD~~~ 954 (1415)
.++..||.+|++||+.+- .....+..+..+. ..++|++|..||||+++
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 999999999999999762 2233344443332 36799999999999974
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=106.88 Aligned_cols=122 Identities=26% Similarity=0.376 Sum_probs=68.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH--
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 904 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-- 904 (1415)
.|.|+|..|+|||||++.|.++.+..... .+... .........+......+... . -...|+||||||+.+..+.
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~-~~~~~-~~~~~~~~~i~~~~~~l~e~-~-~~l~LtiiDTpGfGd~i~n~~ 81 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDS-SIPPP-SASISRTLEIEERTVELEEN-G-VKLNLTIIDTPGFGDNIDNSD 81 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS----------S-------SCEEEEEEEEEEEET-C-EEEEEEEEEEC-CSSSSTHCH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccc-ccccc-ccccccccceeeEEEEeccC-C-cceEEEEEeCCCccccccchh
Confidence 58999999999999999999876543320 00000 00000000011111111110 0 0125999999996643221
Q ss_pred ----------------H------hh---ccCcccceEEEEecc-CCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 905 ----------------R------SR---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 905 ----------------r------~r---gl~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
. .| .-...|++|++|+.+ +|+.+..++.|..|..+ +++|.||.|.|.+
T Consensus 82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~l 155 (281)
T PF00735_consen 82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEeccccc
Confidence 0 01 112368899999974 89999999999888776 8999999999997
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=112.90 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=94.2
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
++.++|+|.+++|||||++.++...+.......+|..+. ...++|+.-.+.+|||||.-+.
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~----------------vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL----------------VGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhh----------------hhhhhhheeeeeecCCccccCcchh
Confidence 334999999999999999999877665433333222221 1233455667999999995332
Q ss_pred --hh--HHh-hc-cCcccceEEEEecc--CCCChhH-HHHHHHHH--hcCCceEEEEEecccccCCccCCChhHHHHHHh
Q 000570 902 --TN--LRS-RG-SGLCDIAILVVDIM--HGLEPQT-IESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 902 --~~--lr~-rg-l~~aDiaILVVDa~--~Gv~~QT-~E~l~llk--~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
.+ |.+ .+ +.+--.+++++|.+ +|..... ..++..++ -.|.|+|+|+||||.... .++
T Consensus 232 drN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~------edL------ 299 (620)
T KOG1490|consen 232 DRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP------EDL------ 299 (620)
T ss_pred hhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc------ccc------
Confidence 11 111 11 12233577788875 4554322 12222232 246799999999999742 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 971 q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
...-..++..+... +.++|+.+|+.+.+||-++-...+.
T Consensus 300 ---------~~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 300 ---------DQKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred ---------CHHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHHH
Confidence 11122344444333 3479999999999999888765443
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=106.88 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=99.5
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCccccc-------------ccCc-----------eeEeeceeEecccccceeeee
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-------------EAGG-----------ITQQIGATYFPAENIRERTRE 878 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~g-------------eagG-----------ITq~iga~~~~~~~i~~~t~~ 878 (1415)
-++++|+|.|.+|+|||||++.|...-+..| ..|| ++.+.++|.-|..+.-. ...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~-lGG 127 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT-LGG 127 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc-chh
Confidence 4677899999999999999999853211111 1111 22344444444332111 011
Q ss_pred cc-------cccccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 879 LK-------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 879 v~-------~~~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
+. .-++--++.+.||-|-|...--.- -...+|++|+|.-..-|-.-|.+.. .+ +.+-=||||||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~-Gi---mEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA-GI---MEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh-hh---hhhhheeeEeccC
Confidence 10 011112456899999985433222 2345899999988777777777653 12 2234599999999
Q ss_pred cccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
+.. +.. . ...+...|... . .+|.... -..|+|.+||.+|+||.+|+..+.
T Consensus 201 ~~~-------A~~----------a-------~r~l~~al~~~---~-~~~~~~~--W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 201 RKG-------AEK----------A-------ARELRSALDLL---R-EVWRENG--WRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred hhh-------HHH----------H-------HHHHHHHHHhh---c-ccccccC--CCCceeEeeeccCCCHHHHHHHHH
Confidence 742 110 0 11111122111 0 1122222 346999999999999999999987
Q ss_pred HHHH
Q 000570 1032 QWTQ 1035 (1415)
Q Consensus 1032 ~l~~ 1035 (1415)
.+..
T Consensus 251 ~h~~ 254 (323)
T COG1703 251 DHRK 254 (323)
T ss_pred HHHH
Confidence 7653
|
|
| >cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=90.03 Aligned_cols=88 Identities=28% Similarity=0.478 Sum_probs=66.6
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhc-cccceeeec
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1127 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~-aa~gv~i~~ 1127 (1415)
+++|+|++..+|+|++++++|++|+|++||+|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999998764 34667788875541 1222 223444555
Q ss_pred ccccc-ccCCCceEEeCCCccHHHHHH
Q 000570 1128 QGLEH-AIAGTGLYVVGPDDDLEDVKE 1153 (1415)
Q Consensus 1128 ~gL~~-~~aG~~~~v~~~e~~~~~~~~ 1153 (1415)
.||.. +.+|+.|+++.++.++..+..
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~~ 91 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIGS 91 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhhH
Confidence 67776 689999999999987765543
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=98.95 Aligned_cols=134 Identities=22% Similarity=0.291 Sum_probs=87.6
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCc--eeEeeceeEe-ccc-ccceeeeeccccc-------------
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYF-PAE-NIRERTRELKANA------------- 883 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagG--ITq~iga~~~-~~~-~i~~~t~~v~~~~------------- 883 (1415)
+-...|.|.+||+-.+||||+|+.|+...+..-..|. .|....+... +.+ .+-..+..+....
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4456789999999999999999999976654222111 1111111000 000 0000000000000
Q ss_pred ------ccC---CCCEEEEeCCCC-----------cchhhHHhhccCcccceEEEEeccC-CCChhHHHHHHHHHhcCCc
Q 000570 884 ------TLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNTE 942 (1415)
Q Consensus 884 ------~~~---~~~l~iIDTPGH-----------e~F~~lr~rgl~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~vP 942 (1415)
.+. ...|+||||||. .+|+......+..||++|||+|+.. -+.+.+.++|..|+-..-.
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk 213 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK 213 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce
Confidence 000 236999999994 4577777777888999999999865 4778999999999988888
Q ss_pred eEEEEEeccccc
Q 000570 943 FIVALNKVDRLY 954 (1415)
Q Consensus 943 ~IVaINKiD~~~ 954 (1415)
+-||+||.|.+.
T Consensus 214 iRVVLNKADqVd 225 (532)
T KOG1954|consen 214 IRVVLNKADQVD 225 (532)
T ss_pred eEEEeccccccC
Confidence 999999999973
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=100.81 Aligned_cols=163 Identities=21% Similarity=0.197 Sum_probs=86.1
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeE----------ecccccc-eeeeeccc----------ccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY----------FPAENIR-ERTRELKA----------NAT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~----------~~~~~i~-~~t~~v~~----------~~~ 884 (1415)
..|.|+|++|+||||||.+++..-......+=||-++.... .+.-.+. ...++... ...
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 45999999999999999998643222222222343332200 0000000 00000000 001
Q ss_pred cCCCCEEEEeCCCCcchhhHHhhcc-Cccc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCCh
Q 000570 885 LKVPGLLVIDTPGHESFTNLRSRGS-GLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~F~~lr~rgl-~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a 962 (1415)
+..-.|+||-+.| |+..+.+ .+.| +-|+|||...|..---.-.-.+ . .-=|+||||+|+.+. .
T Consensus 94 ~~~~Dll~iEs~G-----NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i---~-~aDllVInK~DLa~~------v 158 (202)
T COG0378 94 FPDLDLLFIESVG-----NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGI---F-KADLLVINKTDLAPY------V 158 (202)
T ss_pred CCcCCEEEEecCc-----ceecccCcchhhceEEEEEECCCCCCCcccCCCce---e-EeeEEEEehHHhHHH------h
Confidence 1123689999888 2222222 2345 8899999998853211000000 0 135789999999731 1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 963 ~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
.+ .+........ .+.+..|||.+|++||+|+.+++.|+...
T Consensus 159 ~~-----------------dlevm~~da~-------------~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GA-----------------DLEVMARDAK-------------EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred Cc-----------------cHHHHHHHHH-------------HhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11 0111111111 12366899999999999999999887643
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-08 Score=112.75 Aligned_cols=89 Identities=25% Similarity=0.243 Sum_probs=53.1
Q ss_pred ccccccccccCCCCCCCcCCCCccchhh-hhhhhcccccCCCCCCCCCCCcchhhhhccCCCCCCCCCCCcccccccccc
Q 000570 59 KGKKGNQKNLQAEDDDSKGEEGEENDAE-AIVFTGKKKSKGKKNGGNNALSKSAFELLEGADKDDDDDDSGDKLSKGKYV 137 (1415)
Q Consensus 59 k~kk~~~k~~~~~~~d~~~~~~~~~~~~-~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 137 (1415)
+||++++ ||+|.++- +.+.. .-...|.||+|.+++|+ -||+.++..-+.++.|++++.+++. ..
T Consensus 1 ~~k~~~~-----~~~d~e~l---~~~q~~~ps~k~~kkgkr~~~~~----~s~~edvt~~nr~~~d~e~i~~~~q---~k 65 (807)
T KOG0066|consen 1 KGKKKER-----FDDDEEQL---EKVQEKKPSKKGGKKGKRGGGGG----DSSDEDVTTRNRDNEDLESIASSNQ---SK 65 (807)
T ss_pred CCCcccc-----CCCcHHHH---hhhcccCcchhccccccCCCCCC----ccchhhhhhccccchhHHHHhhhhh---HH
Confidence 3555666 77776544 22211 11344445555444443 1677777766777777888888775 11
Q ss_pred cccccccccccccccCCCcCchhhhhccccCCCCCCCC
Q 000570 138 SLASKGKTKEGLKKGWNKSGSLFAAAAFDAVDGGSESE 175 (1415)
Q Consensus 138 ~~~~k~k~~kk~~k~~~~~~~~~~~~~~~~~d~~~~~~ 175 (1415)
.-+--++.+||++||+++ .+||++.
T Consensus 66 qq~~~kkq~kk~kkgkr~-------------~d~~de~ 90 (807)
T KOG0066|consen 66 QQTAGKKQAKKGKKGKRN-------------NDWSDED 90 (807)
T ss_pred HHHHHHHHhhhccccccc-------------CCCCccc
Confidence 112235667779999999 8888743
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=95.43 Aligned_cols=111 Identities=24% Similarity=0.217 Sum_probs=69.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
.|+|||.+|+|||||+|.|++..+.... ..++|+.+..+... +.+..|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999988764322 23344443322221 23356999999995432
Q ss_pred ----hhHHh----hccCcccceEEEEeccCCCChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 902 ----TNLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 902 ----~~lr~----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
..... ......+++|||+.+. .++......+..+.. ++ ..+||++|..|.+.
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 11111 2344589999999988 677777777766653 33 26899999999863
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-07 Score=108.52 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=75.9
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
.++...|+|+|.-|+|||||+-.|+...+... |...+--+.+|.+. .-....++|+||+-...-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadv------------tPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADV------------TPENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCcc------------CcCcCceEEEecccccch
Confidence 44556699999999999999999987654421 11111112222211 111123899999866554
Q ss_pred hhHHhhccCcccceEEEEeccCC--CChhHHHHHHHHHhc-----CCceEEEEEecccccC
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKMR-----NTEFIVALNKVDRLYG 955 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~G--v~~QT~E~l~llk~~-----~vP~IVaINKiD~~~~ 955 (1415)
..-...-++.+|+++||++.++. +..-+..+|-+++.. ++|+|+|.||+|...+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 44445677889999999988762 222223344455543 5899999999999754
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=92.38 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=67.2
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHH
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 980 (1415)
|..+..+.+..||++|+|+|+.++...+....+.++...+.|+|+|+||+|++.. ..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 58 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK------EV----------------- 58 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH------HH-----------------
Confidence 3456666677799999999999887777766666677778999999999998520 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 981 ~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+.... .+... ..+++|++||++|.|+..|+..|..+++
T Consensus 59 --~~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 59 --LEKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --HHHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 00000 01100 1247999999999999999988876543
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-07 Score=109.75 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-------CChhHHHHHHHHHhcCC-ceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVaINKiD~~ 953 (1415)
..+++||.|||.+|...+..|.+.+|.++|+|.+.-| ...||.++..+...+++ ++||.+||||..
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998443 35899999999999985 889999999975
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=86.33 Aligned_cols=114 Identities=24% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCcee-EeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 901 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGIT-q~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F- 901 (1415)
+...|+|+|.-++|||+||..|+..+...+..---| .+|....+.++.. --..|.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-------------arE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-------------AREQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-------------hhheEEEeecccccCch
Confidence 334589999999999999999998776544322112 2333333322211 0124899999998888
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHh--------cCCceEEEEEecccc
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--------RNTEFIVALNKVDRL 953 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~--------~~vP~IVaINKiD~~ 953 (1415)
..+-..+++.+|+.|||++.++ +..+.-+.+|+. ..+|+||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6667778889999999999988 333333334432 248999999999995
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-06 Score=97.10 Aligned_cols=115 Identities=25% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccc------cC----ceeEeeceeEecccccceeeeecccccccCCCCEEEE
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------AG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 893 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge------ag----GITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iI 893 (1415)
.+.+|.++|..|+|||||++.|+++.+.... +. ++...+....+.-+.. ...|++|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~--------------~~~l~vI 87 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--------------HLNLTVI 87 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe--------------EEEEEEe
Confidence 3456999999999999999999987544331 11 1112221111111110 1249999
Q ss_pred eCCCCcchhhHH------------------------hhccC----cccceEEEEec-cCCCChhHHHHHHHHHhcCCceE
Q 000570 894 DTPGHESFTNLR------------------------SRGSG----LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFI 944 (1415)
Q Consensus 894 DTPGHe~F~~lr------------------------~rgl~----~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~I 944 (1415)
||||..+|.... .|... ..++||+.|-. .||+.+..++.+..+..+ |.+|
T Consensus 88 DtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlI 166 (373)
T COG5019 88 DTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLI 166 (373)
T ss_pred ccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCee
Confidence 999987764320 12211 25677877764 689999999999887654 6899
Q ss_pred EEEEecccc
Q 000570 945 VALNKVDRL 953 (1415)
Q Consensus 945 VaINKiD~~ 953 (1415)
.||-|.|.+
T Consensus 167 PVI~KaD~l 175 (373)
T COG5019 167 PVIAKADTL 175 (373)
T ss_pred eeeeccccC
Confidence 999999987
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.7e-06 Score=89.32 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...++++|..++||||++.+.+...+...... .+|....|+.... +.....++.|||.|++.|..+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~a----t~Gv~~~pl~f~t----------n~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPA----TLGVEVHPLLFDT----------NRGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccC----cceeEEeeeeeec----------ccCcEEEEeeecccceeeccc
Confidence 34589999999999999999987665432211 1222222221100 111235899999999999999
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHH--HHHHh-cCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHH
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL--NLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l--~llk~-~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 981 (1415)
+..+.-..-+||+++|....++.+....| .+++. .|+|+|++.||+|.-. +.
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-----r~-------------------- 130 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-----RK-------------------- 130 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-----cc--------------------
Confidence 99888888999999999887776655555 33333 3589999999999741 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.....+. + ....++.++.+||.+..|...-+.+|..
T Consensus 131 --------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 131 --------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred --------cccccce---e----eecccceeEEeecccccccccchHHHhh
Confidence 0000000 0 1135678999999999999888777654
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-06 Score=101.47 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCcchhh-HH---hh--ccCcccceEEEEeccCCCChhHHHHHHHHH-hcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN-LR---SR--GSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~-lr---~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiD~~ 953 (1415)
..+.||||||...... ++ .. ....+|.++||+|+..|- ...+.+.... ..+ +--+++||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-CCEEEEeeecCC
Confidence 4599999999654321 11 11 123478999999997752 2222222222 223 456789999985
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=94.50 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=64.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc---
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 899 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe--- 899 (1415)
.+.|+|+|-+|+|||||+++|+...+..... .+|-...|..++|...+...+..+...-.+....+.|+|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3569999999999999999999887654444 44555667777776433322211111111222359999999942
Q ss_pred ----chhhHHhhccCcccceEEEEecc
Q 000570 900 ----SFTNLRSRGSGLCDIAILVVDIM 922 (1415)
Q Consensus 900 ----~F~~lr~rgl~~aDiaILVVDa~ 922 (1415)
-..|-...-++.+|.++.||++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23444455567799999999985
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=99.95 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccc-cc--cCceeEee---cee----------EecccccceeeeecccccccCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-GE--AGGITQQI---GAT----------YFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-ge--agGITq~i---ga~----------~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
+.-+|+|+|++|+||||++.+|....+.. |. .+-||.+. |+. .++................+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34579999999999999999997532211 10 01122111 110 0011000000000000012345
Q ss_pred CCEEEEeCCCCcchhh---HHhh---ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-------eEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN---LRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~---lr~r---gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-------~IVaINKiD~~ 953 (1415)
..++||||||...+.. .... +...+.-.+||++++.+....+.-.+.+....++| -=+++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 6799999999664322 1222 22334556999999987766554444444443333 24778999975
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=99.19 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
+.|+|+|.+++|||||+++|++..+..+..++.|. .+|...++..........+. ...+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~-p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK-PKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcC-CccccCceEEEEECCCCCCCCC
Confidence 46999999999999999999998866666666664 44555554321110000000 0011112599999999432
Q ss_pred ----hhhHHhhccCcccceEEEEeccC
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
..+.....++.||++|+|||+..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 22233445678999999999853
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.3e-06 Score=98.44 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEe--eceeEecccccceeeeecccccccCCCCEEEEeCCCCcc-----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~--iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
|+|+|.+++|||||+++|++.++..+..++.|.+ .|...++.......+. +.....+-...|.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~-~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAE-IVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHH-HhCCceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999988876666676644 4444443321100000 0000011112599999999432
Q ss_pred --hhhHHhhccCcccceEEEEeccC
Q 000570 901 --FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 --F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
+.+.....++.||++|+|||+..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 22233345677999999999853
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=92.81 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=65.1
Q ss_pred CcchhhHHhhccCcccceEEEEeccCCC-ChhHH-HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 898 HESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 898 He~F~~lr~rgl~~aDiaILVVDa~~Gv-~~QT~-E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
++.|..++...++.+|++|+|+|+.+.. ....+ .++..+...++|+|||+||+|+... ...
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----------- 85 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----------- 85 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH-----------
Confidence 3667777777899999999999998643 33333 3344555678999999999999621 000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 976 ~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
. ......+... .++++.+||++|.||.+|+..|..
T Consensus 86 ~-------~~~~~~~~~~---------------g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 86 E-------KEQLDIYRNI---------------GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H-------HHHHHHHHHC---------------CCeEEEEecCCchhHHHHHhhhcC
Confidence 0 0111122211 258999999999999999987753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.7e-06 Score=89.14 Aligned_cols=104 Identities=21% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHH
Q 000570 896 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 896 PGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v 975 (1415)
|.+..|..++...+..+|++|+|||+.+......... .....+.|+|+|+||+|++..+ .. ...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~-----~~-~~~-------- 82 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD-----KN-LVR-------- 82 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC-----CC-HHH--------
Confidence 4555588899999999999999999987543322222 2233578999999999996311 00 000
Q ss_pred HHHHHHHHHHHHH--HHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 976 QNEFNMRLVQIVT--QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~l~~I~~--~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
+..... .+...++ ...++|++||++|.||.+|+..|..++
T Consensus 83 -------~~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 83 -------IKNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -------HHHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000100 0111111 113689999999999999998887654
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.8e-06 Score=90.39 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=52.7
Q ss_pred eeEEeCCCCCHHHHHHHHHcCc--ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch----
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 901 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~--v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F---- 901 (1415)
|.++|.+.+|||||+..|.++. |+.++....| .+.....|+.+.|.++|.||.-.=
T Consensus 62 vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~------------------~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 62 VGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT------------------TVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeEEecCccchhhhhhhhcCCCCccccccceeEE------------------EecceEeccccceeeecCcchhcccccC
Confidence 8999999999999999998653 3333322111 112223467788999999995332
Q ss_pred ---hhHHhhccCcccceEEEEeccC
Q 000570 902 ---TNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 902 ---~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
...+...++-|+++++|+|+..
T Consensus 124 kgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccC
Confidence 1223344667999999999864
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-05 Score=84.93 Aligned_cols=117 Identities=24% Similarity=0.299 Sum_probs=72.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccccc-----ccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~g-----eagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
..|.|+|..|.|||||++.|....+... .+-.|++.+-.... ...+.+.... -.|++|||||+.+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~-thvieE~gVk---------lkltviDTPGfGD 116 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSI-THVIEEKGVK---------LKLTVIDTPGFGD 116 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEee-eeeeeecceE---------EEEEEecCCCccc
Confidence 4599999999999999999986655432 11122222111100 0111111111 1499999999776
Q ss_pred hhhH--------------------------HhhccCc--ccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 901 FTNL--------------------------RSRGSGL--CDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 901 F~~l--------------------------r~rgl~~--aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
+.+. |.+-+.. .+++++.|.. .|.+.|..++.+..|... +.+|.||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 5432 2222222 4566766665 578899999999877643 46888899999
Q ss_pred cc
Q 000570 952 RL 953 (1415)
Q Consensus 952 ~~ 953 (1415)
.+
T Consensus 196 tl 197 (336)
T KOG1547|consen 196 TL 197 (336)
T ss_pred cc
Confidence 86
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-05 Score=96.91 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=67.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc--cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge--agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
..|+|||.+|+|||||+|.|++..+.... ..++|. +..+... +.+..|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 45999999999999999999987643222 123332 1111111 123469999999976531
Q ss_pred -----hH----HhhccC--cccceEEEEeccCC-CChhHHHHHHHHHh-cC----CceEEEEEeccccc
Q 000570 903 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 903 -----~l----r~rgl~--~aDiaILVVDa~~G-v~~QT~E~l~llk~-~~----vP~IVaINKiD~~~ 954 (1415)
.. ..+.+. .+|++|||+..... ........++.+.. ++ -.+||++|..|.+.
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11 112323 47888888876532 22233344444432 22 37999999999874
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=84.84 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=61.5
Q ss_pred hccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHH
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 984 (1415)
Q Consensus 907 rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~ 984 (1415)
+.+..+|++|+|||+.+++..+......++... ++|+|+|+||+|++.. . .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------VTA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------HHH
Confidence 456789999999999998776666666776653 4899999999999620 0 011
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 985 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 985 ~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
..+..+... + .+.+|++||++|.|+..|+..|..++
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHHH
Confidence 111122111 0 12368999999999999998886543
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=85.48 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCcchhhHH--------hhccCcccceEEEEeccCCCChh--HHHHHHHHHhcCCceEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr--------~rgl~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4679999999954322221 22344589999999997643321 11223444444 3779999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-06 Score=92.64 Aligned_cols=160 Identities=20% Similarity=0.186 Sum_probs=105.4
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.++-. +.|+|.-++|||+++.+.++.++.......|..+.....+.|+. .....+.|||..|++.
T Consensus 23 ~hL~k--~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQer 87 (229)
T KOG4423|consen 23 EHLFK--VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQER 87 (229)
T ss_pred hhhhh--hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhhh
Confidence 44444 88999999999999999988776544433333222211222221 1123588999999999
Q ss_pred hhhHHhhccCcccceEEEEeccCCCChh-HHHHHHHHHh-----cC--CceEEEEEecccccCCccCCChhHHHHHHhhh
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM-----RN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~-----~~--vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
|.+|..-++..+.++++|+|.+...+.. +..+.+-+-. .+ +|+|+..||||... |....
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~~~------------ 154 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAKNE------------ 154 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhhhh------------
Confidence 9999999999999999999998865533 2223332221 23 57899999999852 11100
Q ss_pred HHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 973 TDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 973 ~~v~~ef~~~l~~I~~~L-~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
-...+..+ .++| +.-++.||++...+|++....|+.
T Consensus 155 ----------~~~~~d~f~keng--------------f~gwtets~Kenkni~Ea~r~lVe 191 (229)
T KOG4423|consen 155 ----------ATRQFDNFKKENG--------------FEGWTETSAKENKNIPEAQRELVE 191 (229)
T ss_pred ----------hHHHHHHHHhccC--------------ccceeeeccccccChhHHHHHHHH
Confidence 01122222 2333 346889999999999998887765
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=91.50 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=73.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
..+.++|..|.|||||+|.|..+.+.... ..+...++-- +..+......+..+ .+ .-.|++|||||..++...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~----t~~i~~~~~~iee~-g~-~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKE----TVEIESTKVEIEEN-GV-KLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccc----cceeeeeeeeecCC-Ce-EEeeEEeccCCCcccccc
Confidence 66999999999999999999877544221 0000000000 00011111111100 00 124899999997654321
Q ss_pred ------------------------Hhh-ccC--cccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 905 ------------------------RSR-GSG--LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 905 ------------------------r~r-gl~--~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..| ... ..+++|+.|.. .||+.|..++.+..+.. .+.+|.||-|.|.+
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTL 171 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccC
Confidence 011 122 36788888875 68999999999887764 47899999999987
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.3e-06 Score=95.67 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCcchhhH-------Hhhc-----cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l-------r~rg-----l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||...+... ..+. ...++..+||+|++.|..... ....+.... -+.-+++||+|..
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~-~~~giIlTKlD~t 272 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAV-GLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhC-CCCEEEEECCCCC
Confidence 456999999996543221 1111 234788999999997543222 111222222 2457899999974
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-05 Score=81.00 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=57.0
Q ss_pred cceEEEEeccCCCChhHHHHH-HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000570 913 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991 (1415)
Q Consensus 913 DiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~ 991 (1415)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . .+...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~------~-------------------~~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK------E-------------------VLRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH------H-------------------HHHHHHHHHH
Confidence 789999999887665554444 4667788999999999999620 0 0001111111
Q ss_pred HcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH
Q 000570 992 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 992 e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~ 1034 (1415)
.. ...++|++||.+|.|+..|+..|...+
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999887654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=85.86 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCcc-hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~-F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||.. ..+.....+..+|++|+|+|+.++.......++..+ .+.|+|+++||+|++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~------~~---------- 63 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP------KK---------- 63 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh------HH----------
Confidence 478754 345556778889999999999887766555544443 36799999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~ 1035 (1415)
+...+..+... ...++++||++|.|+..|+..|...+.
T Consensus 64 ---------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 64 ---------TKKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ---------HHHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 00111111111 136899999999999999998877653
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.9e-06 Score=93.92 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCcchhhHHh-------hc-----cCcccceEEEEeccCCCChhHHHHHHH-HHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~-------rg-----l~~aDiaILVVDa~~Gv~~QT~E~l~l-lk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..+..... +. ...+|.+|||+|++.| ..+...+.. .+..+ +.-+++||+|-.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCCC
Confidence 35699999999765422211 11 2348999999999754 333333322 22233 567899999985
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-05 Score=92.44 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=59.3
Q ss_pred hhccCcccceEEEEeccCCC-Ch-hHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHH
Q 000570 906 SRGSGLCDIAILVVDIMHGL-EP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv-~~-QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l 983 (1415)
...+..+|++|||+|+.+.. .+ +...+|..+...++|+|||+||+|++.. . .+
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~-------------------~~ 138 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------T-------------------EQ 138 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------H-------------------HH
Confidence 34578899999999998642 33 2234455556678999999999999621 0 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHH
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 984 ~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l 1033 (1415)
......+...| +++|++||.+|.||.+|+..|...
T Consensus 139 ~~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 139 QQWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 11112222221 478999999999999999887643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=96.38 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcchhh-HH---h--hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTN-LR---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~-lr---~--rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..... ++ . .....+|.++||+|++.|... ...+..+...--+--+++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 35799999999654321 11 1 123357889999999887443 222333333223677899999974
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=90.87 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCCcc-hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~-F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||.. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|++.. ..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~~---------- 65 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------AV---------- 65 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------HH----------
Confidence 388854 344456678889999999999887665555555555 36899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
+......+... .+++|++||.+|.|+..|+..|..+++.
T Consensus 66 ---------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 ---------TKQWLKYFEEK---------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---------HHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00111112111 1478999999999999999988776643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=83.70 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=39.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..|+|+|.+|+|||||+|+|++... ..+...|.|.+...+.. ..++.||||||.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-------------------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-------------------CCCEEEEECcCC
Confidence 4588999999999999999998654 45666777765432211 135899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=84.78 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=42.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
...|+|+|.+++|||||+|+|++... ..+...|+|.+...+.+. .++.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 35699999999999999999998654 556677888765433321 25899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.5e-05 Score=94.17 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCcchhhH------HhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--Cce-EEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEF-IVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~l------r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~-IVaINKiD~~ 953 (1415)
..+.||||||...+... ....+..+|.+|||+|++.| . ..++.++.++ +++ -|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q---~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--Q---QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--H---HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 37999999996554221 12334568999999999886 2 3334444432 343 5789999964
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.4e-05 Score=79.35 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=41.8
Q ss_pred HhhccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEecccc
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 953 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~~ 953 (1415)
..+.+..||++|+|+|+.++...+......++... ++|+|+|+||+|++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 44677889999999999998887777777777766 89999999999986
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.6e-05 Score=88.79 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCcch-hhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhH
Q 000570 895 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 973 (1415)
Q Consensus 895 TPGHe~F-~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~ 973 (1415)
-|||..= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~---------- 67 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E---------- 67 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H----------
Confidence 5888653 334456788899999999998877766555555443 7899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHHHH
Q 000570 974 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 974 ~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~~~ 1036 (1415)
.+......+... .++++++||.+|.|+..|+..|..+++.
T Consensus 68 --------~~~~~~~~~~~~---------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 --------VTKKWIEYFEEQ---------------GIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred --------HHHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 001111122111 1478999999999999999988777654
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-05 Score=90.27 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCEEEEeCCCCcchhhH----Hhh--ccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNL----RSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~l----r~r--gl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..++||||||....... ..+ .....+.++||+|+..+- ......+..+...+ .-=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 46999999996543221 111 123467789999986422 12234444444433 235679999975
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.3e-05 Score=85.09 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCEEEEeCCCCcchhhHH-----h-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-----S-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-----~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.||||||+..+.... . ......+-++||++++.+..... ....+....++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 459999999966543221 1 11224778999999988643222 344444444544 4459999986
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.3e-05 Score=91.69 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccccc---ccCceeE---eeceeE----------ecccccceeeeeccc-ccccC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQ---QIGATY----------FPAENIRERTRELKA-NATLK 886 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~g---eagGITq---~iga~~----------~~~~~i~~~t~~v~~-~~~~~ 886 (1415)
+..+|+|+|..|+|||||+.+|...-...+ ...-|+. .+|+.. +++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 456799999999999999998864211110 0001111 111100 00000000 000000 00233
Q ss_pred CCCEEEEeCCCCcchhhHH------hhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr------~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...++||||||...+.... .+.. .....+|||++..+.... .+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 4679999999965443221 1111 134568888887643222 2334433333 3677999999984
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2e-05 Score=92.19 Aligned_cols=61 Identities=31% Similarity=0.335 Sum_probs=35.5
Q ss_pred hccCCCCCCC-CCCCcccccCCCCCccccccccCCCCCCcc-------cccccccccccCCCCCCccccccCCCC
Q 000570 197 SKKGGKKKSG-TTGFSASAFDLLDDEDEDVREDKDEEDEPV-------IFTDKKKKSKKSGKNSSTFDLLVNEND 263 (1415)
Q Consensus 197 ~~k~~~kk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~kk~~kk~~k~~~~~~~~~~~~d 263 (1415)
++|+++|++. |++++++..++.-.+.+. .+.+++ -.++.++.+||++|++.+-+|+|+++.
T Consensus 24 s~k~~kkgkr~~~~~~s~~edvt~~nr~~------~d~e~i~~~~q~kqq~~~kkq~kk~kkgkr~~d~~de~e~ 92 (807)
T KOG0066|consen 24 SKKGGKKGKRGGGGGDSSDEDVTTRNRDN------EDLESIASSNQSKQQTAGKKQAKKGKKGKRNNDWSDEDEK 92 (807)
T ss_pred chhccccccCCCCCCccchhhhhhccccc------hhHHHHhhhhhHHHHHHHHHHhhhcccccccCCCCccccc
Confidence 4566666654 455556655555444331 122232 133446777788888888999986554
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.8e-05 Score=86.92 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=55.2
Q ss_pred cCcccceEEEEeccCCCC-hhH-HHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLE-PQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~-~QT-~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
+..+|++|||+|+.+... ... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 478999999999976422 222 34455567788999999999998521 00 01111
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+... .++++++||++|.||..|+..|.
T Consensus 134 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAI---------------GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHC---------------CCeEEEEeCCCCccHHHHHhhcc
Confidence 1112111 14899999999999998887653
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=84.06 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=73.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEee-ceeEeccccccee-----eeecccc---------cc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRER-----TRELKAN---------AT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~i-ga~~~~~~~i~~~-----t~~v~~~---------~~ 884 (1415)
|+.+|.|.-|+||||||+.|+... |...+.|-|..+- +........+.+. |+++..+ ..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 788999999999999999998543 2334444444441 1111111111111 1221110 01
Q ss_pred cCCCCEEEEeCCCCcc-------hhh-HHhhccCcccceEEEEeccCCCChhH---HHHHHHHHhcCCceEEEEEecccc
Q 000570 885 LKVPGLLVIDTPGHES-------FTN-LRSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 885 ~~~~~l~iIDTPGHe~-------F~~-lr~rgl~~aDiaILVVDa~~Gv~~QT---~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+..+||-|-|... |.. ...+..-..|.+|-|||+.+...... .....++... =+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 2347799999999544 222 12223334688999999998666443 2333444444 48999999998
Q ss_pred c
Q 000570 954 Y 954 (1415)
Q Consensus 954 ~ 954 (1415)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 3
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00052 Score=84.67 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=45.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|.|||..++||||||.+|.+..- ...|. -++++|+.+..-. ..+ ...++||=..|-..|..+.
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~---~~~~~--aLeYty~~v~d~~--------~dd--~~rl~vw~L~g~~~~~~LL 90 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED---PKKGL--ALEYTYLDVKDED--------RDD--LARLNVWELDGDPSHSDLL 90 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC---CCCCc--ccceEEEeeccCc--------CCc--CceeeEEEcCCCcchHhHh
Confidence 4499999999999999999875321 11222 2444444332110 011 1223444333444455555
Q ss_pred hhccC---ccc-ceEEEEeccCC
Q 000570 906 SRGSG---LCD-IAILVVDIMHG 924 (1415)
Q Consensus 906 ~rgl~---~aD-iaILVVDa~~G 924 (1415)
.-.+. ..+ ++|||+|....
T Consensus 91 k~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 91 KFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred cccCCcccccceEEEEEecCCCh
Confidence 44443 233 46777887654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.5e-05 Score=83.95 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=52.9
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC--ccccccc-CceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchh-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 902 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t--~v~~gea-gGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~- 902 (1415)
+|+|+|..++|||||||.|++. .+..+.. ...|..|-.+..++.. .....++||||||..+..
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5899999999999999999988 5544322 2334444334333321 012359999999954431
Q ss_pred -----hHHhhccC--cccceEEEEeccC
Q 000570 903 -----NLRSRGSG--LCDIAILVVDIMH 923 (1415)
Q Consensus 903 -----~lr~rgl~--~aDiaILVVDa~~ 923 (1415)
.++..++. .+|++|++++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 22233333 4898888887643
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.6e-05 Score=79.77 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.+.|+|+|++++|||||+|+|++... ..+...|+|.+.-.+.+. .+++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 456699999999999999999998653 344445666554332221 35999999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00071 Score=77.29 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.|.|+|..++||||||.+|-+..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc
Confidence 49999999999999999997654
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.5e-05 Score=83.02 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.6
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.+++.+++|+|+.|+|||||+|.|+...
T Consensus 32 ~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 32 LLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567789999999999999999999763
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.4e-05 Score=78.68 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=37.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
.|+|+|.+|+|||||+++|++.... .....|.|.+.-.+.+ ..++.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCcC
Confidence 5999999999999999999976542 3334445544321111 1258999999963
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=69.61 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cc
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1122 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~g 1122 (1415)
.+|++.|.++|.+.|.|+++.+.|.+|+|+.||.|++++++ . ...|+++++++..+..+ ..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~--------------~~~V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--V--------------TGEVKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--c--------------EEEEEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987643 2 23456666666665544 34
Q ss_pred eeeeccccccccCCCceEEeCCC
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~v~~~e 1145 (1415)
+.|.+.+++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 88888888765555666776654
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=77.55 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=51.8
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc--ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch-hh
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-TN 903 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~--~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F-~~ 903 (1415)
.|+++|.+.+||||||..|+.+.-. ..+....|.-.| -..|++..|.++|.||.-.= +.
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG------------------vi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG------------------VIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc------------------eEEecCceEEEecCccccccccc
Confidence 3999999999999999999876432 222222221111 12355567999999995332 22
Q ss_pred HH------hhccCcccceEEEEeccC
Q 000570 904 LR------SRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 904 lr------~rgl~~aDiaILVVDa~~ 923 (1415)
-+ ...++.+|++++|+|+..
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCc
Confidence 22 233566999999999965
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.7e-05 Score=81.77 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV 850 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v 850 (1415)
..|+|+|.+|+|||||+|+|++...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4599999999999999999997543
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00049 Score=82.20 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=57.9
Q ss_pred cCcccceEEEEeccCCCChhHHHHH-HHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
+.++|.+|+|++....+....++-| ..+...++|+|||+||+|++..+ . .. .+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~---------------~~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RA---------------FVNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HH---------------HHHHHH
Confidence 4668999999998766665544433 44556789999999999996310 0 00 011111
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+... .+++|++||++|.||.+|+..|..
T Consensus 176 ~~y~~~---------------g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNI---------------GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhC---------------CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 112111 158999999999999999988764
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0003 Score=72.67 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=101.0
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcch
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
++=+..|+++|..-.|||||+-...+..... ..||..|..+... +..+... .-.+.|||..|++.|
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de----~~~q~~GvN~mdk------t~~i~~t----~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDE----EYTQTLGVNFMDK------TVSIRGT----DISFSIWDLGGQREF 82 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHH----HHHHHhCccceee------EEEecce----EEEEEEEecCCcHhh
Confidence 3444559999999999999999987654431 1234444332211 1111100 013789999999999
Q ss_pred hhHHhhccCcccceEEEEeccCCCChhH-HHHHHHHHhcCC--ceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 902 ~~lr~rgl~~aDiaILVVDa~~Gv~~QT-~E~l~llk~~~v--P~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
.++..-+...+-.+|+++|....-+-.. .++.++++..|. --|++.+|.|+.-.. ..+...++..
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I~~-------- 150 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETISR-------- 150 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHHHH--------
Confidence 9999988888889999999987443332 344577777663 235679999975321 1111111111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 979 f~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
+.+.+. . --+.++|.+|+-...||..++..+.
T Consensus 151 ----------qar~YA-------k----~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 151 ----------QARKYA-------K----VMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred ----------HHHHHH-------H----HhCCcEEEeeccccccHHHHHHHHH
Confidence 111110 0 0125899999999999998887654
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=85.78 Aligned_cols=55 Identities=27% Similarity=0.478 Sum_probs=42.6
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
...|+|+|.+|+|||||+|+|++..+ ..+...|+|.++..+.+ ..++.||||||.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtPGi 176 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-------------------GKGLELLDTPGI 176 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-------------------CCcEEEEECCCc
Confidence 45699999999999999999998765 55667888877632221 135899999996
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=77.21 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCcchhhH----Hhhc--cCcccceEEEEeccCCCChhHHHH-HHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l----r~rg--l~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||...+... .... ....|.+||||++..+. .+... ..++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 456899999998643211 1111 23489999999986543 23333 33444455 366788999986
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=85.46 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=58.4
Q ss_pred cCcccceEEEEeccCCCChhHH-HHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 987 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~ 987 (1415)
+..+|.+++|+++...+.+..+ .+|..+...++|.|||+||+|++.. . ....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~------~---------------------~~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED------A---------------------EEKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC------H---------------------HHHH
Confidence 4678999999999888887544 4556678889999999999999631 0 0011
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHH
Q 000570 988 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 1030 (1415)
Q Consensus 988 ~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L 1030 (1415)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1121111 23689999999999998887765
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=88.39 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCcchhh-HHh-----hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~-lr~-----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~ 952 (1415)
...+.||||||...+.. ++. .....++.++||+|++.| ......+..+.. .++ .-|++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 35699999999544311 111 112346788999998754 222233332222 232 3577899995
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=84.84 Aligned_cols=68 Identities=28% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC--------ChhHHHHHHHHH---h----cCCceEEEEEec
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLLK---M----RNTEFIVALNKV 950 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv--------~~QT~E~l~llk---~----~~vP~IVaINKi 950 (1415)
....+.+||++|+..+...|...+..++++|+|||..+-- ...-.+++.++. . .++|+||++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 3456889999999999999999999999999999997621 122233333332 2 468999999999
Q ss_pred ccc
Q 000570 951 DRL 953 (1415)
Q Consensus 951 D~~ 953 (1415)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 975
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.6e-05 Score=90.82 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=65.4
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc------cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v------~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~ 900 (1415)
.|.|+|.+|+|||||+|+|++... ..+..+|+|.++..+ +. ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~-----------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL-----------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee-----------------CCCCEEEECCCCCC
Confidence 599999999999999999997432 233445556554322 11 13478999999654
Q ss_pred hhhHHh----------hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 901 FTNLRS----------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 901 F~~lr~----------rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.. .-.......+++++..+.+.-.-+..+..+...+..|++++++.+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 322111 11123455667777665443333333344444566788888888776
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=76.20 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
...+.||||||..... ...+..+|.+|+|+...- ...+..+.. -.+..--+|+|||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 4579999999965333 346778999999987762 222222221 333445689999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=84.02 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=41.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+...|+|+|.+|+|||||+|+|++..+ ..+...|+|.....+.+ ..++.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-------------------SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-------------------CCCEEEEECCCc
Confidence 345699999999999999999997653 44566777765432221 125899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00017 Score=77.41 Aligned_cols=56 Identities=32% Similarity=0.601 Sum_probs=39.6
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.+.|+++|.+++|||||+++|++.++. .+...|+|.+...+.++ .++.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 3356999999999999999999987652 33344555554332221 35899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00022 Score=87.11 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCcchhhH-Hh-----hccCcccceEEEEeccCCCChhHHHHHHHHH-hcCCceEEEEEeccc
Q 000570 887 VPGLLVIDTPGHESFTNL-RS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 952 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~l-r~-----rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiD~ 952 (1415)
...+.||||||...+... +. .....+|.++||+|++.| .........+. ..+ ..=|++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~-i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLG-LTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCC-CCEEEEeCccC
Confidence 346999999995433211 11 123347889999999754 23333333332 223 23567999995
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00044 Score=85.81 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEee-------c---eeEecc--------------cccceee---
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------G---ATYFPA--------------ENIRERT--- 876 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~i-------g---a~~~~~--------------~~i~~~t--- 876 (1415)
++-.|+|.|.+++||||++|++++..+..+..+-+|.-. | ....+. ..+..-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 566799999999999999999997665443333222100 0 000000 0000000
Q ss_pred -----eeccc-c-cccCCCCEEEEeCCCCcc---hhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEE
Q 000570 877 -----RELKA-N-ATLKVPGLLVIDTPGHES---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946 (1415)
Q Consensus 877 -----~~v~~-~-~~~~~~~l~iIDTPGHe~---F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVa 946 (1415)
+.++. . +.+--..+.+||.||... ++.......-.+|+.|||+.+..-++......+......+-.++|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 00000 0 111112589999999643 4444444555689999999998755544444444444443345667
Q ss_pred EEecccc
Q 000570 947 LNKVDRL 953 (1415)
Q Consensus 947 INKiD~~ 953 (1415)
.||+|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7788985
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=83.44 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..+|+|+|+.|+||||++.+|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566799999999999999999864
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00038 Score=84.09 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc-ccccccCc-ee---Eeecee----------EecccccceeeeecccccccCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGG-IT---QQIGAT----------YFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~-v~~geagG-IT---q~iga~----------~~~~~~i~~~t~~v~~~~~~~~~ 888 (1415)
+..+|+|+|.+|+||||++.+|.... ...|..-+ ++ +.+++. .+|...... ...+.....-...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~~ 300 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDGS 300 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCCC
Confidence 45579999999999999999986421 11111000 11 111100 000000000 0000000011245
Q ss_pred CEEEEeCCCCcchhhH-H---h---hc--cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNL-R---S---RG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~l-r---~---rg--l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+.||||||+...... . . +. .....-.+||+|++.|... ....+......+ +-=+++||+|-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCC-CCEEEEEcccCC
Confidence 6999999997543211 1 1 11 1224568899999875322 223333333333 345679999975
|
|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00048 Score=89.66 Aligned_cols=14 Identities=43% Similarity=0.316 Sum_probs=6.1
Q ss_pred cccCCcccccccCC
Q 000570 30 VIDDDEYSIGTELT 43 (1415)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (1415)
|||+--|+.=|-||
T Consensus 1001 vI~k~N~fsfTALs 1014 (2084)
T PTZ00121 1001 VIDKENHFSFTALT 1014 (2084)
T ss_pred eecCcchhhhhhcc
Confidence 44444444444444
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00036 Score=66.12 Aligned_cols=74 Identities=31% Similarity=0.464 Sum_probs=59.2
Q ss_pred cccC-CCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+. ..+.|+.-+|..|.|+.|.++.+ +.+ ..+.|.||+.++.++.+|..|+.|+|.|.+.+ . +++.
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~---~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~-------~-~~i~ 76 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVD-------A-KDLE 76 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC---ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCC-------H-HHcC
Confidence 5542 23345555999999999999998 444 47999999999999999999999999997643 2 5888
Q ss_pred CCCeEEE
Q 000570 1373 IEDELVS 1379 (1415)
Q Consensus 1373 ~~d~l~s 1379 (1415)
.|++|.|
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9998865
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=79.56 Aligned_cols=127 Identities=19% Similarity=0.156 Sum_probs=62.9
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccc-cCceeE---eecee----------Eecccccceeeeecccc----ccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQ---QIGAT----------YFPAENIRERTRELKAN----ATL 885 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~ge-agGITq---~iga~----------~~~~~~i~~~t~~v~~~----~~~ 885 (1415)
+.++|+|+|.+|+|||||+..|...-...+. .+-|+. .+++. .++..... ....+... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEE 152 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHhc
Confidence 4578999999999999999988643211111 111111 11110 00000000 00000000 011
Q ss_pred CCCCEEEEeCCCCcchhhH-----Hh-hccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 886 KVPGLLVIDTPGHESFTNL-----RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~l-----r~-rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....+.||||||+..+... .. ......|.++||++++.+-. .....+......+ +-=+++||+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 2357999999997643221 11 12334677899999865221 2222333333322 345789999985
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00057 Score=82.62 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=63.4
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcccccccCc-----eeEe---ecee----------Eecccccceeeeeccc-cc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG-----ITQQ---IGAT----------YFPAENIRERTRELKA-NA 883 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagG-----ITq~---iga~----------~~~~~~i~~~t~~v~~-~~ 883 (1415)
.++.+|+++|++|+||||++..|...-...+...| ||.+ +++. .+|+...... ..+.. -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHHH
Confidence 34568999999999999999988632111100001 1111 1110 0010000000 00000 01
Q ss_pred ccCCCCEEEEeCCCCcchhhH----HhhccCc--cc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 884 TLKVPGLLVIDTPGHESFTNL----RSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~l----r~rgl~~--aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+....+.||||||+..+..+ ....+.. ++ -.+||+|++.|..... +.+......+ +-=+++||+|-.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 224467999999996543321 1112221 23 5889999988733222 3333333222 445789999975
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=78.66 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
+-|+.+|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4588999999999999999999853
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=76.95 Aligned_cols=124 Identities=23% Similarity=0.214 Sum_probs=62.2
Q ss_pred CceeEEeCCCCCHHHHHHHHHc-----Cc--ccccccCceeE------eeceeEecccccceeeeeccc--------ccc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG-----TN--VQEGEAGGITQ------QIGATYFPAENIRERTRELKA--------NAT 884 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~-----t~--v~~geagGITq------~iga~~~~~~~i~~~t~~v~~--------~~~ 884 (1415)
|+++|.|..||||||||++|+. .+ +...+.|.+.. ..|.......+.. .+..+.. -..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gc-icc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGC-ICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTT-ESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCC-cccccHHHHHHHHHHHHH
Confidence 7899999999999999999994 11 11112221110 0011111111100 0011100 011
Q ss_pred cC--CCCEEEEeCCCCcchhhHH-----hhccCcccceEEEEeccCCCChhH--HHHHHHHHhcCCceEEEEEecccc
Q 000570 885 LK--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 885 ~~--~~~l~iIDTPGHe~F~~lr-----~rgl~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.. .+.+.||-|.|......+. ....-..+.+|.|||+.+-....+ .....++... =+|++||+|++
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---DvIvlnK~D~~ 154 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---DVIVLNKIDLV 154 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---CEEEEeccccC
Confidence 12 4689999999966655551 111233678999999955311111 1222334433 48999999997
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00086 Score=81.69 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccc-c-ccCc-eeE---eecee----------EecccccceeeeecccccccCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQ---QIGAT----------YFPAENIRERTRELKANATLKV 887 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~-g-eagG-ITq---~iga~----------~~~~~~i~~~t~~v~~~~~~~~ 887 (1415)
...+|+|+|..|+|||||+..|.+..+.. + ...+ |+. .+|+. .+|.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45579999999999999999886532111 1 1111 111 11110 0111000000000000112345
Q ss_pred CCEEEEeCCCCcchhhHH-----h-hccCcccceEEEEeccCCCChhHHH-HHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-----S-RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-----~-rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~~vP~IVaINKiD~~ 953 (1415)
..+.||||+|........ . .......-.+||++++.+ .++.. .+......+ +-=+++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 679999999965432211 1 122234567899998752 33333 233333333 334679999975
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00034 Score=90.02 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcc-cccc-c-Cce---eEeeceeE----------ecccccceeeeeccc-ccccCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE-A-GGI---TQQIGATY----------FPAENIRERTRELKA-NATLKV 887 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v-~~ge-a-gGI---Tq~iga~~----------~~~~~i~~~t~~v~~-~~~~~~ 887 (1415)
.-+|+|+|+.|+||||++.+|..... ..|. . .-| |..+|+.. +|....... ..+.. -..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~-~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDA-ADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCH-HHHHHHHHHhcC
Confidence 34799999999999999999975432 1111 0 011 22222210 010000000 00000 002334
Q ss_pred CCEEEEeCCCCcchhh-HHh-----hccCcccceEEEEeccCCCChhHHH-HHHHHHhc-CC-ceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~-lr~-----rgl~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~-~v-P~IVaINKiD~~ 953 (1415)
..++||||||...... ++. ......+-.+||+|++. ..+++. ++...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 5799999999432211 111 11234567899999875 233322 22333221 11 334779999975
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00075 Score=82.79 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCcchhh----HHhhc---cCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTN----LRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~----lr~rg---l~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
...+.||||||+..+.. ..... .....-++||++++.+.. .....+..+...++ --|++||+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 45799999999755421 11111 223446688888865321 12233344443332 35889999975
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0002 Score=85.56 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.7
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 170 L~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 170 LRNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred hccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 344568999999999999999999653
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0002 Score=85.51 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.9
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 203 L~~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 203 LTGRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred HhhCCEEEECCCCCCHHHHHHHhcccc
Confidence 344568999999999999999999654
|
|
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00069 Score=64.94 Aligned_cols=82 Identities=18% Similarity=0.376 Sum_probs=58.4
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccC-CcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~-g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
|++.|.++|.+.|.|+++++.|..|+|++||.+.+++.. +. ....+|+++++|+..+..| ..+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-------------~~~~~V~sI~~~~~~~~~a~aGd~v 67 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-------------FRPVTVKSIHRNRSPVRVVRAGQSA 67 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-------------EeEEEEEEEEECCeECCEECCCCEE
Confidence 467899999999999999999999999999999987653 21 0134556666666655543 347
Q ss_pred eeeccccccccCCCceEEe
Q 000570 1124 KITAQGLEHAIAGTGLYVV 1142 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v~ 1142 (1415)
.|.+.+++......+++++
T Consensus 68 ~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 68 SLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEcCCCHHHcCCccEEe
Confidence 7777777654444555443
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00049 Score=80.31 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=56.2
Q ss_pred cCcccceEEEEeccCCC-ChhHHH-HHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
+..+|++|||+|+.... ....++ ++..+...++|+|+|+||+|+... .. . ...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~----------------~~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---E----------------ELE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---H----------------HHH
Confidence 67799999999998876 444333 445566788999999999999621 00 0 000
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHH
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~ 1031 (1415)
...+.. ..++++++||.+|.||..|+..|.
T Consensus 131 ~~~~~~---------------~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALA---------------LGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHh---------------CCCeEEEEECCCCccHHHHHhhhc
Confidence 000111 125899999999999988877654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=90.68 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=67.3
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCccccccc--CceeEeecee-EecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGAT-YFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~gea--gGITq~iga~-~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
.+.-|-.+|||..|+||||||... +-.+..... ..-+..++.+ ++.| |-.....||||+|.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w---------------wf~~~avliDtaG~ 171 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW---------------WFTDEAVLIDTAGR 171 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce---------------EecCCEEEEcCCCc
Confidence 455678999999999999999986 222221110 0001111111 0111 11235789999992
Q ss_pred c---------------chhhHH--hhccCcccceEEEEeccCCCC--hhH-HHHHHHH--------Hh--cCCceEEEEE
Q 000570 899 E---------------SFTNLR--SRGSGLCDIAILVVDIMHGLE--PQT-IESLNLL--------KM--RNTEFIVALN 948 (1415)
Q Consensus 899 e---------------~F~~lr--~rgl~~aDiaILVVDa~~Gv~--~QT-~E~l~ll--------k~--~~vP~IVaIN 948 (1415)
. .|..+. .|--.-.|+|||+||+.+=+. ++. ..+...+ .. ..+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 2 123322 233456899999999976442 111 1111111 12 3579999999
Q ss_pred ecccccC
Q 000570 949 KVDRLYG 955 (1415)
Q Consensus 949 KiD~~~~ 955 (1415)
|||++.|
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999875
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00077 Score=81.14 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=64.0
Q ss_pred CcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHH
Q 000570 898 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 898 He~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ 977 (1415)
.++|..+.......++++|+|||+.+-...-..+...++ .+.|+|+|+||+|++..+ ... .. +.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~~-~~-------~~- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VNL-SK-------IK- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CCH-HH-------HH-
Confidence 467888888888889999999999764432222222332 268999999999997311 000 00 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 978 ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
.-+...+...|+. ...++++||++|.||.+|+..|..
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHH
Confidence 0011123333332 125889999999999999988754
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.001 Score=82.25 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
..||+|+|..|+||||++.+|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999753
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=70.54 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccc
Q 000570 886 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 886 ~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
....+.|||||+.... .....+..+|.+|+|+.....-...+...+.+++..++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 3467999999976433 33445678999999999886555667778888888899999999999963
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00034 Score=83.52 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=61.2
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcc-cccccCc--eeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcc---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 900 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v-~~geagG--ITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~--- 900 (1415)
.|+|+|.+++|||||+++|++..+ .....+. |...+|...+|...+...+..+. ........+.|+|.||...
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccchh
Confidence 489999999999999999998876 4443333 44555666555432111111111 1111223589999999432
Q ss_pred ----hhhHHhhccCcccceEEEEeccC
Q 000570 901 ----FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 ----F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
+.+-....++.||++++||++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 44455566778999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00087 Score=64.17 Aligned_cols=82 Identities=18% Similarity=0.368 Sum_probs=60.5
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc---cee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ---GIK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~---gv~ 1124 (1415)
|++.|.++|.+.|.|+++.+.|.+|+|++||.|.++++... ....|+++++|+..+..|. .+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~--------------~~~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET--------------LKTTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC--------------ceEEEEEEEECCcCCCEECCCCEEE
Confidence 56789999999999999999999999999999988764211 2244666667777666553 378
Q ss_pred eeccccccccCCCceEEeC
Q 000570 1125 ITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1125 i~~~gL~~~~aG~~~~v~~ 1143 (1415)
|.+.+++......+++++.
T Consensus 67 l~l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 67 VLLRGVKREDVERGMVLAK 85 (87)
T ss_pred EEECCCCHHHcCCccEEec
Confidence 8888876655555666554
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00039 Score=82.35 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=42.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+...|.|+|.+++|||||+|+|++... ..+..+|+|.++-...+. .++.|+||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 344599999999999999999998765 566777888665332221 35999999994
|
|
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=62.05 Aligned_cols=78 Identities=15% Similarity=0.329 Sum_probs=55.6
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
||++.|.+++.+. .|+++.|.|.+|+|++||.|.+++++ .. ..|+++++++..+..| ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ES--------------VEVKSIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cE--------------EEEEEEEECCeECCEECCCCEE
Confidence 4788999999888 99999999999999999999987753 22 3455556666555543 336
Q ss_pred eeeccccccccCCCceEE
Q 000570 1124 KITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v 1141 (1415)
.+.+.+++......+.++
T Consensus 64 ~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 64 RLKLKGIDEEDISPGDVL 81 (83)
T ss_pred EEEECCCCHHHCCCCCEE
Confidence 777777665434444443
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00041 Score=80.18 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.9
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
..+..-+.+++|+.|+|||||||+|...
T Consensus 160 ~~l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 160 ELLAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred HHhcCCeEEEECCCCCcHHHHHHhhCch
Confidence 3466668999999999999999999863
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00091 Score=70.45 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=35.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
..|+++|.+++|||||+++|++.... .+...|+|.++..+.. ..++.||||||.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 44899999999999999999865432 2334444433211111 125899999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=71.10 Aligned_cols=114 Identities=22% Similarity=0.217 Sum_probs=70.7
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
|.|.+|||--+|||++.....+.. ...+ |.-+-.+.-+ +.. ........+.+||.||+.+|..-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkM-sPne----TlflESTski-------~~d---~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKM-SPNE----TLFLESTSKI-------TRD---HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeecc-CCCc----eeEeeccCcc-------cHh---hhhhhhcceEEeecCCccccCCCc
Confidence 559999999999999877655421 1111 1000000000 000 00001135889999998876432
Q ss_pred --HhhccCcccceEEEEeccCCC-ChhHHHHHHHHHhcC----CceEEEEEeccccc
Q 000570 905 --RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRLY 954 (1415)
Q Consensus 905 --r~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiD~~~ 954 (1415)
..+-.+.|-..|+|||+.+.. .+-|+-++-..+.++ +.|=|+|.|+|-+.
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 234466788999999997754 356666776777664 56889999999763
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00069 Score=77.28 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
+...+++|+|++|+|||||||+|++..
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 455679999999999999999998653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=75.61 Aligned_cols=127 Identities=21% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEee---ceeEeccccccee--eeeccccc---------
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI---GATYFPAENIRER--TRELKANA--------- 883 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~i---ga~~~~~~~i~~~--t~~v~~~~--------- 883 (1415)
+-|+.+|.|.-|+||||||++|+... |...+.|.+..+- +.....+..+..- |+.+....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45889999999999999999998531 1122333222110 0000001111111 11111100
Q ss_pred cc----CCCCEEEEeCCCCcchhhHHhhc--------cCcccceEEEEeccCCCChhH--HHHHHHHHhcCCceEEEEEe
Q 000570 884 TL----KVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 884 ~~----~~~~l~iIDTPGHe~F~~lr~rg--------l~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVaINK 949 (1415)
.. ..+...||-|.|..+-..+.... .-..+.+|.|||+.++..... .....++... =+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEEEec
Confidence 00 13678999999976544333221 123588999999987543211 1122333333 4899999
Q ss_pred cccc
Q 000570 950 VDRL 953 (1415)
Q Consensus 950 iD~~ 953 (1415)
+|++
T Consensus 160 ~Dl~ 163 (318)
T PRK11537 160 TDVA 163 (318)
T ss_pred cccC
Confidence 9997
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00096 Score=77.89 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=24.5
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHcCcc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV 850 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~t~v 850 (1415)
.+++.+++|+|++|+|||||++.|++...
T Consensus 158 ~L~~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 158 YLKGKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred hhccceEEEECCCCCCHHHHHHHHhchhh
Confidence 35567899999999999999999987543
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0042 Score=58.85 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=53.4
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccc---cce
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1123 (1415)
Q Consensus 1047 ~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa---~gv 1123 (1415)
||++.|.++|.. .|+++.+.|.+|+|++||.+.+++++ .. ..|+++++++..+..+ ..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--TQ--------------VEVLSIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--cE--------------EEEEEEEECCEECCEECCCCEE
Confidence 478899998865 38999999999999999999987753 22 3455556665555433 447
Q ss_pred eeeccccccccCCCceEE
Q 000570 1124 KITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~v 1141 (1415)
.|.+.+++......+.++
T Consensus 63 ~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 63 RLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEecCCCHHHCCCCCEE
Confidence 777777665444444443
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=76.05 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccc-eeeeecccccccCCCCEEEEeCCCCc---
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGHE--- 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~-~~t~~v~~~~~~~~~~l~iIDTPGHe--- 899 (1415)
.++.|+|+|.+++|||||++.|+.++...+..+-.|++.....++....+ ..+..+......-.-.|+|+|+.|..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 34569999999999999999999988776666666665543333322111 01111111100011249999999842
Q ss_pred ----chhhHHhhccCcccceEEEEeccC
Q 000570 900 ----SFTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 900 ----~F~~lr~rgl~~aDiaILVVDa~~ 923 (1415)
-..|-....++.||.++-||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 234445556777999999998854
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=70.64 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=71.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCccc-ccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~-~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
.|.+||.+|+|||+|=..+...-++ +....|-|+++-...+.+ +.+--|++||+.|++.|....
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf---------------lGnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF---------------LGNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh---------------hhhheeehhccCCcHHHHHHH
Confidence 4899999999999987766533222 122334444442222111 111248999999999886543
Q ss_pred h-----hccCcccceEEEEeccCCCChhHHH----HHHHHHhc--CCceEEEEEeccccc
Q 000570 906 S-----RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRLY 954 (1415)
Q Consensus 906 ~-----rgl~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~--~vP~IVaINKiD~~~ 954 (1415)
. .-++..+++|+|+|+...-....+. .|..+... ...+++.+.|+|++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 3 4577789999999997643333333 34444433 246889999999973
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0013 Score=77.13 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999998653
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0031 Score=67.40 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=47.2
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~ 953 (1415)
.+.|||||+...+. ....+..+|.+|+|++....-...+...+..+...+.+ +.|++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999999865443 34456789999999998766556666667777766654 67899999863
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=75.55 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccc---cccCceeE---eeceeEe--cccccceeee-eccc-------ccccCCC
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQE---GEAGGITQ---QIGATYF--PAENIRERTR-ELKA-------NATLKVP 888 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~---geagGITq---~iga~~~--~~~~i~~~t~-~v~~-------~~~~~~~ 888 (1415)
.-+|+++|++|+||||.|-+|-..-+.. ..-+=||. .|||..- .+..+..... .+.. -..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5679999999999999999886432200 11112332 2333100 0000000000 0000 0123456
Q ss_pred CEEEEeCCCCcchhhHHh----hccC--cccceEEEEeccCCCChhH-HHHHHHHHhcCCceEEEEEecccc
Q 000570 889 GLLVIDTPGHESFTNLRS----RGSG--LCDIAILVVDIMHGLEPQT-IESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~----rgl~--~aDiaILVVDa~~Gv~~QT-~E~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.+.||||.|+..+..+.. ..+. ...-..||++++. ...+ .+.+...+..++- =+++||+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 799999999765533322 1122 2345667888754 2222 2334444444432 3568999975
|
|
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0039 Score=60.27 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=60.1
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1294 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1294 ~vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
.+|+ ...+.|+..+|..|.|+.|..+++ +.+ ....|.||+.++.++..|..|+.|+|.|.+.+. ..+
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~--------~~v 79 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK--------KDI 79 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCH--------HHc
Confidence 3665 234567777999999999999987 554 479999999999999999999999999987532 257
Q ss_pred cCCCeEEE
Q 000570 1372 DIEDELVS 1379 (1415)
Q Consensus 1372 ~~~d~l~s 1379 (1415)
..|++|.+
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 77887754
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=73.07 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCEEEEeCC-CCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcC-CceEEEEEeccc
Q 000570 888 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTP-GHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiD~ 952 (1415)
..+.|+||- |.+.|..-+ ...||++|+|||.+.--......+-.+....+ .++.|++||+|-
T Consensus 134 ~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 458888984 677776433 34599999999986522222333445666788 699999999996
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0018 Score=74.49 Aligned_cols=57 Identities=25% Similarity=0.481 Sum_probs=41.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 898 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH 898 (1415)
+.|.|+|-+|+|||||+|+++... +..|...|+|+.+...+.-. ..+.+.+|||||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~----------------~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS----------------HRPPVYLIDTPGI 206 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec----------------cCCceEEecCCCc
Confidence 458999999999999999998533 34566778888876532211 1256999999994
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0053 Score=58.15 Aligned_cols=68 Identities=19% Similarity=0.415 Sum_probs=51.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcc---cccee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~a---a~gv~ 1124 (1415)
|++.|.++|.+.|.|+++.+.|.+|+|++|+.+.+.++. .. ..|++++.++..+.. +..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~--------------~~V~sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EE--------------TRVRSIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ce--------------EEEEEEEECCcCcCEEcCCCEEE
Confidence 578899999999999999999999999999999887643 22 345556666665543 34477
Q ss_pred eeccccc
Q 000570 1125 ITAQGLE 1131 (1415)
Q Consensus 1125 i~~~gL~ 1131 (1415)
|.+.++.
T Consensus 65 i~l~~~~ 71 (83)
T cd03696 65 LNLTGVD 71 (83)
T ss_pred EEEcCCC
Confidence 7777664
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=79.12 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=36.3
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc------ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~------v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
..|.|+|.+|+|||||+|+|+... +..+..+|+|.++-. ++. ..+..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l-----------------~~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPL-----------------DDGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEc-----------------CCCcEEEECCCcc
Confidence 358999999999999999998543 122334455544321 111 1246899999964
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0026 Score=71.49 Aligned_cols=137 Identities=18% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccC----ceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geag----GITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
-+..|..+|.+|.|||||++.|.++++...... ++--+...|.+...+++ -.|+|+||-|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeecccc
Confidence 345588899999999999999999987654322 22112111211111111 249999999954
Q ss_pred c------------------hhhH------Hhhc-----cCcccceEEEEec-cCCCChhHHHHHHHHHhcCCceEEEEEe
Q 000570 900 S------------------FTNL------RSRG-----SGLCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNK 949 (1415)
Q Consensus 900 ~------------------F~~l------r~rg-----l~~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINK 949 (1415)
+ |.+. ..|. -+..+++++.|.. .||+.....-.+..|. .++.+|.+|-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHH
Confidence 3 2111 0111 2335677777765 4555554444443333 34678888899
Q ss_pred cccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 000570 950 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 996 (1415)
Q Consensus 950 iD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~ 996 (1415)
.|.+. ..++...-..|+..|...|+.
T Consensus 186 aDtis---------------------K~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 186 ADTIS---------------------KEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred hhhhh---------------------HHHHHHHHHHHHHHHHhcCce
Confidence 99862 223333345677888877754
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0069 Score=62.99 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=44.7
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhc--CCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiD~ 952 (1415)
..+.|||||++.... ....+..||.+|+|++....-...+...+..+... ..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 469999999864433 34567889999999998654344455566555432 3578899999975
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.021 Score=69.12 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCc-------------chhhHHhhccCcccceEEEEeccCCCChh----HHHHHHHHHhcCCceEEEEEec
Q 000570 888 PGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQ----TIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 888 ~~l~iIDTPGHe-------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~Q----T~E~l~llk~~~vP~IVaINKi 950 (1415)
+.+.++|.||.- +...|...++...+.+||||- +|--.. .-.....+.-.|...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 358999999943 344566678899999999984 232111 1123344455678899999999
Q ss_pred ccc
Q 000570 951 DRL 953 (1415)
Q Consensus 951 D~~ 953 (1415)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 996
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0072 Score=81.10 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCcccccccCceeE--eeceeEecccccceeeeecccccccCCCCEEEEeCCC----C
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----H 898 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq--~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG----H 898 (1415)
-|=-+|||++|+||||+|... +-++...+..|-.. .+|..++.| |-...-.+|||.| |
T Consensus 125 LPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw---------------wf~deaVlIDtaGry~~q 188 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW---------------WFTDEAVLIDTAGRYITQ 188 (1188)
T ss_pred CCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc---------------ccccceEEEcCCcceecc
Confidence 345789999999999998753 22222211111110 011011111 1123478999999 3
Q ss_pred c--c---------hhhH--HhhccCcccceEEEEeccCCCC--hhHH-HHHHHHHh----------cCCceEEEEEeccc
Q 000570 899 E--S---------FTNL--RSRGSGLCDIAILVVDIMHGLE--PQTI-ESLNLLKM----------RNTEFIVALNKVDR 952 (1415)
Q Consensus 899 e--~---------F~~l--r~rgl~~aDiaILVVDa~~Gv~--~QT~-E~l~llk~----------~~vP~IVaINKiD~ 952 (1415)
. + |..+ ..|...-.|+|||.+++.+-.+ ++.+ .+...|+. ...|+.|++||+|+
T Consensus 189 ~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 189 DSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred cCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 2 1 2111 3466777999999999987443 3332 12222222 35799999999999
Q ss_pred ccC
Q 000570 953 LYG 955 (1415)
Q Consensus 953 ~~~ 955 (1415)
+++
T Consensus 269 l~G 271 (1188)
T COG3523 269 LPG 271 (1188)
T ss_pred ccc
Confidence 976
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.019 Score=65.62 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
...-|-|+-.|.|.-|+||||||+.|+.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHc
Confidence 3456888889999999999999999984
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0063 Score=72.83 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC-----------CChhHHHHHHHHHh----cCCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKiD~ 952 (1415)
..+.|||++|+..+...|...+..++++|+|||.++- ....++..+..+.. .++|+||++||+|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4589999999999999999999999999999999862 12233344433332 46899999999998
Q ss_pred ccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 953 ~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
... .....++...+...... ..+...+.-|...|....-+ .....+-+..|+|..-.+|..+++.+..
T Consensus 264 ~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 264 FEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred HHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 521 00000111100000000 01122223333444332100 0224567788999998888888877655
Q ss_pred HH
Q 000570 1033 WT 1034 (1415)
Q Consensus 1033 l~ 1034 (1415)
.+
T Consensus 332 ~I 333 (342)
T smart00275 332 II 333 (342)
T ss_pred HH
Confidence 43
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0041 Score=74.70 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcC------cc---c--cccc------CceeEeeceeEecccccceeeeec-cc---c
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT------NV---Q--EGEA------GGITQQIGATYFPAENIRERTREL-KA---N 882 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t------~v---~--~gea------gGITq~iga~~~~~~~i~~~t~~v-~~---~ 882 (1415)
++.+|.++|--|+||||.+.+|... .+ . ..+. ..+..+++..+|+...-..- ..+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P-v~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP-VEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH-HHHHHHHHHH
Confidence 3456899999999999999887521 11 0 0111 11234555556654211100 001 00 1
Q ss_pred cccCCCCEEEEeCCCCcch-----hhHH-hhccCcccceEEEEeccCCCChhHHHHHHHHHhcC--Cce-EEEEEeccc
Q 000570 883 ATLKVPGLLVIDTPGHESF-----TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEF-IVALNKVDR 952 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F-----~~lr-~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~-IVaINKiD~ 952 (1415)
+......+.||||.|-... ..++ ......+|-+|||||++-|-. ..+.++.++ +|+ =|+|||+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccC
Confidence 1122346999999993222 2221 234556899999999998643 223333332 444 378999996
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=53.90 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCeEEEEEEeeceeecCCCEeecCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeE
Q 000570 1299 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDEL 1377 (1415)
Q Consensus 1299 ~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l 1377 (1415)
..+.|+.|+|..|.|++|..+.+......+.++|.+|.+.+.++.++..|+.|+|.+...+ .+..||.|
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~----------~~~~g~~l 81 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD----------DIKIGDTL 81 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc----------ccCCCCEe
Confidence 4578999999999999999999854233567899999999999999999999999985431 46666665
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=71.75 Aligned_cols=97 Identities=28% Similarity=0.347 Sum_probs=56.6
Q ss_pred chhhHHhhccCccc-ceEEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHH
Q 000570 900 SFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 900 ~F~~lr~rgl~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~e 978 (1415)
+|..+.. .+...| ++++|||+.+-.... ...|..+. .+.|+|+|+||+|++.. ....
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~s~-~~~L~~~~-~~kpviLViNK~DLl~~-----~~~~-------------- 115 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNGSW-IPGLHRFV-GNNPVLLVGNKADLLPK-----SVKK-------------- 115 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCCch-hHHHHHHh-CCCCEEEEEEchhhCCC-----ccCH--------------
Confidence 5666443 445455 999999998743222 22222221 36899999999999631 1000
Q ss_pred HHHHHHHHH-HHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHH
Q 000570 979 FNMRLVQIV-TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~l~~I~-~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~ 1032 (1415)
..+...+ ..+...|+. ...++++||++|.||.+|+..|..
T Consensus 116 --~~i~~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 116 --NKVKNWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred --HHHHHHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHH
Confidence 0011111 112223321 126899999999999999988754
|
|
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=55.74 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=48.8
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhcccc-c--ee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ-G--IK 1124 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~-g--v~ 1124 (1415)
|++.|.++|...+.|+.+++.|.+|+|++||.+.+++++ . ...|+++++|+..+..+. | +.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v~ 64 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--K--------------TSRVKSIETFDGELDEAGAGESVT 64 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--C--------------eEEEEEEEECCcEeCEEcCCCEEE
Confidence 578999999888888889999999999999999987643 2 234666667776665443 2 55
Q ss_pred eeccc
Q 000570 1125 ITAQG 1129 (1415)
Q Consensus 1125 i~~~g 1129 (1415)
|.+.+
T Consensus 65 l~l~~ 69 (81)
T cd03695 65 LTLED 69 (81)
T ss_pred EEECC
Confidence 55543
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0063 Score=65.82 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.3
Q ss_pred cceEEEEeccCCCChhHHHHHHH--HHhcCCceEEEEEecccc
Q 000570 913 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 913 DiaILVVDa~~Gv~~QT~E~l~l--lk~~~vP~IVaINKiD~~ 953 (1415)
|++|+|||+...+.......+.+ +...+.|+|+++||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999877766666666 555678999999999997
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0064 Score=72.05 Aligned_cols=71 Identities=25% Similarity=0.197 Sum_probs=53.3
Q ss_pred cccCCCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCC--------CChhHHHHHHHHHh-------cCCceEEEE
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------LEPQTIESLNLLKM-------RNTEFIVAL 947 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~G--------v~~QT~E~l~llk~-------~~vP~IVaI 947 (1415)
+.++...+-++|++|+.+-..-|....-.++++|+||+.++= .+..-.+++.+... .+++||+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 445566799999999988888888888899999999998641 22233444444432 368999999
Q ss_pred Eecccc
Q 000570 948 NKVDRL 953 (1415)
Q Consensus 948 NKiD~~ 953 (1415)
||+|+.
T Consensus 270 NK~DLF 275 (354)
T KOG0082|consen 270 NKKDLF 275 (354)
T ss_pred ecHHHH
Confidence 999985
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0058 Score=60.82 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t 848 (1415)
.|+++|+.|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 4899999999999999999643
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0021 Score=77.88 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=45.6
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc-ccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCC--Ccchh
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--HESFT 902 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~-v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG--He~F~ 902 (1415)
.+|+++|.+|+||||+||+|.+.. |....++|-|.|+-.+++. +.+.|.|||| ..+|.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 458999999999999999999875 4456677888776554443 4689999999 45565
Q ss_pred h
Q 000570 903 N 903 (1415)
Q Consensus 903 ~ 903 (1415)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 4
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=63.98 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.5
Q ss_pred ccCcccceEEEEe---ccCCCChhHHHHHHHHHhcCCceEEEEEecc
Q 000570 908 GSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 908 gl~~aDiaILVVD---a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 951 (1415)
.+..+|+ ||+| ..+...++.++.+..+...+.|+|+++|+..
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 3445666 7888 6666778888888888788999999999843
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0094 Score=63.82 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCceE-EEEEecccc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiD~~ 953 (1415)
...+.|||||+...-..+....+..+|.+|+|+....--...+...+..++..+++++ +++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 4569999999974322221111367899999998876556778888899999898764 789998853
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.033 Score=69.57 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000570 534 EEEERLRKEEEERKRLEELERQA-EEAKRRKKEKEKE 569 (1415)
Q Consensus 534 eeEE~~r~eEEe~~~~ee~er~~-ee~~~~k~~~~ke 569 (1415)
..|-++.||||++++.+++|+.+ +-++.|+-+.++.
T Consensus 380 QReiE~qrEEerkkeie~rEaar~ElEkqRqlewEra 416 (1118)
T KOG1029|consen 380 QREIERQREEERKKEIERREAAREELEKQRQLEWERA 416 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444444332 2334444444444
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.025 Score=75.44 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.3
Q ss_pred EEEcchhhch
Q 000570 1250 IFIADIIYHL 1259 (1415)
Q Consensus 1250 I~~~~IIY~L 1259 (1415)
.+....||.|
T Consensus 998 ~~~~~~~~~~ 1007 (1021)
T PTZ00266 998 TLQKRNMYAL 1007 (1021)
T ss_pred eeeccchHHH
Confidence 3344444544
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0096 Score=59.09 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=42.4
Q ss_pred CEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCC----ceEEEEEe
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 949 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v----P~IVaINK 949 (1415)
.+.|||||+..... ....+..||.+|+|++....-...+...+.+++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975543 3346778999999998876555566666666666553 56688885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0018 Score=67.68 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
|+|+|+|+.|+|||||+..|...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.022 Score=70.36 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=62.9
Q ss_pred eeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHHhh
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|.++|.-++|||.||+.+++..+..+..+.++..+....+... . ....+.+-|.+-. ....+...
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~------------g--~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK------------G--QQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec------------c--ccceEEEeecCcc-ccccccCc
Confidence 8899999999999999999876665332222221111111100 0 0012445555432 22222222
Q ss_pred ccCcccceEEEEeccCCCChhHHHHHHHH-----HhcCCceEEEEEecccc
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 908 gl~~aDiaILVVDa~~Gv~~QT~E~l~ll-----k~~~vP~IVaINKiD~~ 953 (1415)
-..||+++||+|... |....++..+ ....+|+++|.+|+|+-
T Consensus 493 -e~~cDv~~~~YDsS~---p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 -EAACDVACLVYDSSN---PRSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -cceeeeEEEecccCC---chHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 267999999999985 3333333222 12678999999999995
|
|
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=55.83 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=58.3
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEee-cCC-ceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~-~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
+|+ +..+.|+.-+|..|.|++|..+.+ +.+ ...+..+|.||+.++..+.+|..|+.|+|.|.+.+. .++
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 79 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR--------SLL 79 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH--------HHc
Confidence 554 344567777999999999999987 542 123579999999999999999999999999976532 145
Q ss_pred cCCCeEE
Q 000570 1372 DIEDELV 1378 (1415)
Q Consensus 1372 ~~~d~l~ 1378 (1415)
..|++|.
T Consensus 80 ~~G~vl~ 86 (87)
T cd03694 80 RKGMVLV 86 (87)
T ss_pred CCccEEe
Confidence 5666664
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.035 Score=69.45 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 000570 530 RKKREEEERLRKEE 543 (1415)
Q Consensus 530 ~~~reeEE~~r~eE 543 (1415)
+++||||+++++++
T Consensus 384 E~qrEEerkkeie~ 397 (1118)
T KOG1029|consen 384 ERQREEERKKEIER 397 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
|
|
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.017 Score=54.75 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=56.6
Q ss_pred cccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccC
Q 000570 1295 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1373 (1415)
Q Consensus 1295 vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~ 1373 (1415)
+|+...+.|+.-+|..|.|++|..+.+ +.+ ...+|.||+.++.++.+|..|+.|+|.|.+.+. ..+..
T Consensus 9 v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~--------~~v~~ 77 (83)
T cd03698 9 KYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDE--------EDISP 77 (83)
T ss_pred EEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEECCCCH--------HHCCC
Confidence 554224556666999999999999987 554 358999999999999999999999999986532 14556
Q ss_pred CCeEE
Q 000570 1374 EDELV 1378 (1415)
Q Consensus 1374 ~d~l~ 1378 (1415)
|++|.
T Consensus 78 G~vl~ 82 (83)
T cd03698 78 GDVLC 82 (83)
T ss_pred CCEEe
Confidence 66663
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.014 Score=55.05 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=56.3
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhH-H
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 905 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l-r 905 (1415)
+|+|.|..|+||||+...|...-... |. ++ ...+ .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~----g~--~v----~~~~------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR----GK--RV----LLID------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC----CC--eE----EEEC------------------CEEEEeCCCCccchhhhh
Confidence 47889999999999999886432111 10 00 0000 4899999986554432 2
Q ss_pred hhccCcccceEEEEeccCCCChhHHHHH----HHHHhcCCceEEEEE
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 948 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaIN 948 (1415)
...+..+|.+++|++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456678999999988764443333321 222223456666665
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.017 Score=63.15 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcc-hh-----hHHhhccCccc---ceEEEEeccCCCC-----hhHHHHHHHHHhcCCceEEEEEeccccc
Q 000570 889 GLLVIDTPGHES-FT-----NLRSRGSGLCD---IAILVVDIMHGLE-----PQTIESLNLLKMRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 889 ~l~iIDTPGHe~-F~-----~lr~rgl~~aD---iaILVVDa~~Gv~-----~QT~E~l~llk~~~vP~IVaINKiD~~~ 954 (1415)
.++|+|+||+-. |+ ....+.+.+-+ ++|+++|+.--+. .....++..+-...+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 589999999432 32 22233333322 3566666532111 2223344445567899999999999985
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.031 Score=64.96 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=71.6
Q ss_pred cCcccceEEEEeccCC-CChh-HHHHHHHHHhcCCceEEEEEecccccCCccCCChhHHHHHHhhhHHHHHHHHHHHHHH
Q 000570 909 SGLCDIAILVVDIMHG-LEPQ-TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 l~~aDiaILVVDa~~G-v~~Q-T~E~l~llk~~~vP~IVaINKiD~~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~l~~I 986 (1415)
....|-+||||.+.++ +... --.+|-++...++..||+|||+|++.. ... .. ...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~---------------~~--~~~ 133 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEA---------------AV--KEL 133 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHH---------------HH--HHH
Confidence 3447777888877664 3333 334455667788988889999999731 111 00 112
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCCCCCChhhHHHHHHHHH----------HHHHHHhhhcccccc-eEEEEE
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1055 (1415)
Q Consensus 987 ~~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~dLl~~L~~l~----------~~~l~e~l~~~~~~~-~~VlEv 1055 (1415)
...+...| ++++.+|++++.|+..|...|...+ -..|+..|.+....+ +.|.+
T Consensus 134 ~~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~- 197 (301)
T COG1162 134 LREYEDIG---------------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE- 197 (301)
T ss_pred HHHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc-
Confidence 22222222 6899999999999998888775432 134555555432221 22222
Q ss_pred EEEcCcceEEEEEEE
Q 000570 1056 KVIEGHGTTIDVVLV 1070 (1415)
Q Consensus 1056 k~~~G~Gtvi~~iV~ 1070 (1415)
..-.|..||....++
T Consensus 198 ~~~rGkHTTt~~~l~ 212 (301)
T COG1162 198 KLGRGRHTTTHVELF 212 (301)
T ss_pred cCCCCCCccceEEEE
Confidence 233566677766655
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.043 Score=65.93 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCceEEEEEeccc
Q 000570 928 QTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 928 QT~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.....++.|+..+.||||+||=.+-
T Consensus 168 AEervI~ELk~igKPFvillNs~~P 192 (492)
T PF09547_consen 168 AEERVIEELKEIGKPFVILLNSTKP 192 (492)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3456678899999999999998773
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.023 Score=53.79 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred cccCCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccC
Q 000570 1295 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1373 (1415)
Q Consensus 1295 vf~~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~ 1373 (1415)
+|+.. +.|+.-+|..|.|+.|..+.+ +.+ ....|.||+.++..+.+|..|+-|+|.|.+.+. ..+..
T Consensus 9 v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~--------~~v~~ 76 (82)
T cd04089 9 KYKDM-GTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEE--------EDISP 76 (82)
T ss_pred EEEcC-CEEEEEEEeeeEEecCCEEEEeCCC---cEEEEEEEEECCEECCEECCCCEEEEEecCCCH--------HHCCC
Confidence 55533 456666999999999999987 554 257899999999999999999999999986542 24566
Q ss_pred CCeEE
Q 000570 1374 EDELV 1378 (1415)
Q Consensus 1374 ~d~l~ 1378 (1415)
|++|.
T Consensus 77 G~vl~ 81 (82)
T cd04089 77 GFVLC 81 (82)
T ss_pred CCEEe
Confidence 77664
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.016 Score=56.65 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=44.6
Q ss_pred ceeEEe-CCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCcchhhHH
Q 000570 827 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 827 iV~IlG-hvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
+|+|+| ..|+||||+.-.|...-... |. . ...+..+. . ..+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~----~~--~--vl~~d~d~--------------~-~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARR----GK--R--VLLIDLDP--------------Q-YDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhC----CC--c--EEEEeCCC--------------C-CCEEEEeCcCCCCHH--H
Confidence 467777 67999999988875432111 10 0 11111110 0 358999999975443 2
Q ss_pred hhccCcccceEEEEeccC
Q 000570 906 SRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 906 ~rgl~~aDiaILVVDa~~ 923 (1415)
...+..||.+|++++...
T Consensus 56 ~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 56 RNALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHHCCEEEEeccCCH
Confidence 356677999999998765
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=55.10 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=58.6
Q ss_pred ceeEEeCCCCCHHHHHHHHHcCcccc-cccCc-eeE-------eeceeEecccccceeeeecccccccCCCCEEEEeCCC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGG-ITQ-------QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 897 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t~v~~-geagG-ITq-------~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPG 897 (1415)
.|.|.|.+|+|||||+-+|...--.. ...+| +|. .+|+..+...+-.. ...........-.+=+.+|+-+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~-~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEE-GILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCce-EEEEEcCCCCcccceEEeeHHH
Confidence 38999999999999999886321111 11122 221 12222222221100 0000000000001122333333
Q ss_pred Cc-chhhHHhhccCcccceEEEEec---cCCCChhHHHHHHHHHhcCCceEEEEEeccc
Q 000570 898 HE-SFTNLRSRGSGLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 898 He-~F~~lr~rgl~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~ 952 (1415)
.+ -+.....+++..+|++ +||= |.-..+.-.+.+..+...+.|+|+++.+-++
T Consensus 86 le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 86 LEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 32 2233344555556765 4553 3323344455666667778899999988766
|
|
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.035 Score=52.85 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=53.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcc-eeehhhhcCCCCCccceeeeeeeehhhhccccceeee
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1126 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i-~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~ 1126 (1415)
|++.|+.+.+.+..|.++.++|++|+|++||.|.++...... ..+|..|+.+..... ....++ .+|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~-------~~v~~~--~aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKR-------VEVEEA--EAGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCe-------eECcEE--CCCCEEE
Confidence 468899999999999999999999999999999877653211 123333322211111 111222 2454556
Q ss_pred ccccccccCCCce
Q 000570 1127 AQGLEHAIAGTGL 1139 (1415)
Q Consensus 1127 ~~gL~~~~aG~~~ 1139 (1415)
+.||..+..|+.+
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 7788777777765
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.067 Score=66.73 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=7.7
Q ss_pred CCceEEEEEeccc
Q 000570 940 NTEFIVALNKVDR 952 (1415)
Q Consensus 940 ~vP~IVaINKiD~ 952 (1415)
.-|+++|.-|=|+
T Consensus 1191 kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1191 KPPILLVAGKDDM 1203 (1259)
T ss_pred CCCeEEEecCchH
Confidence 3466666666554
|
|
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.023 Score=54.46 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=56.0
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|+ ...+.|+-.+|..|.|+.|..+++. .+. -....|.||+.++.++.+|..|+.|+|.|.+.+. ..+.
T Consensus 8 v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~--------~~v~ 78 (87)
T cd03697 8 VFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKR--------EDVE 78 (87)
T ss_pred EEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCH--------HHcC
Confidence 555 2334555559999999999999873 221 2468899999999999999999999999976431 1455
Q ss_pred CCCeEE
Q 000570 1373 IEDELV 1378 (1415)
Q Consensus 1373 ~~d~l~ 1378 (1415)
-|++|.
T Consensus 79 rG~vl~ 84 (87)
T cd03697 79 RGMVLA 84 (87)
T ss_pred CccEEe
Confidence 567664
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.03 Score=53.50 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=55.0
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceee
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKI 1125 (1415)
Q Consensus 1046 ~~~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i 1125 (1415)
.||.+.|+.+.+.+..|.+..++|++|+|+.|+.+.... ....+|..|+.+...+.. ...+ +.+|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~-------~v~~--~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVV-------TADT--VTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeE-------ECcE--ECCCCEE
Confidence 467889999999999999999999999999999886543 111233344333222111 1122 2346677
Q ss_pred eccccccccCCCce
Q 000570 1126 TAQGLEHAIAGTGL 1139 (1415)
Q Consensus 1126 ~~~gL~~~~aG~~~ 1139 (1415)
++.||..+..|+.+
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 77888888888765
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.023 Score=66.52 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred ccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 822 ~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
.-++.+|+|+|-.|+||||-+.+|.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 34677899999999999999999864
|
|
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.02 Score=52.65 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred ceEEEEEEEeeEEccCCEEEEeccCC---cceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecccccc-ccCCC
Q 000570 1062 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1137 (1415)
Q Consensus 1062 Gtvi~~iV~~G~Lk~GD~Ivv~g~~g---~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~gL~~-~~aG~ 1137 (1415)
|+++.++|++|+|+.||.|++++... +...+|+.|+.++...... ...+.+|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~---------~~~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEA---------VAGANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEE---------ETTEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEe---------CCceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999976221 2346666665444211111 11234567788888888 57776
Q ss_pred ce
Q 000570 1138 GL 1139 (1415)
Q Consensus 1138 ~~ 1139 (1415)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.021 Score=64.72 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHH------hcCCceEEEEEecc
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 951 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk------~~~vP~IVaINKiD 951 (1415)
.+.+.||||||+... +....+..+|++|+.+....--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 357999999997753 3445677899999888765422223334433322 23678899999987
|
|
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.019 Score=66.59 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
.+|+++|.-|+||||||+.|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 368999999999999999987543
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.06 Score=48.95 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=38.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhh
Q 000570 1048 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1096 (1415)
Q Consensus 1048 ~~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~l 1096 (1415)
+.+.|..++...+.|+++.++|.+|+|++|+.+.+++........|+.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i 49 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSL 49 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEe
Confidence 3578889999999999999999999999999998876422333444444
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.028 Score=63.55 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCChhHHHHHHHHHhcCCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiD~ 952 (1415)
..+.|||||+...+. ....+..+|.+|+|++....-...+...+.++...++++ .|++|+++.
T Consensus 109 yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 109 TDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred CCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 579999999865543 333456799999999886544445556666677777774 589999885
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.12 Score=64.59 Aligned_cols=47 Identities=40% Similarity=0.653 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000570 521 LARRKEAEERKKREEEERLRKEE--EERKRLEELERQAEEAKRRKKEKE 567 (1415)
Q Consensus 521 ~~~~~~eee~~~reeEE~~r~eE--Ee~~~~ee~er~~ee~~~~k~~~~ 567 (1415)
++.||+.||.+||++||.++.+. |-+|+.||++|.++++.+++-+.+
T Consensus 936 ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 936 ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33344444444444433333222 223344444444444444443333
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.038 Score=60.83 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCC---hhHHHHHHHHHhc--CCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~-IVaINKiD~ 952 (1415)
..+.||||||. +..+....+..+|.+|+++....--. .++...+..+... +.|. .|++|+.+.
T Consensus 77 ~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 77 YDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 46999999997 34455667788999999998764222 2333333333222 3554 466676553
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.046 Score=59.20 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcC
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
.+.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999999999999754
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.013 Score=69.38 Aligned_cols=58 Identities=19% Similarity=0.373 Sum_probs=42.8
Q ss_pred cCCCceeEEeCCCCCHHHHHHHHHcCcc-cccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCCc
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 823 lR~piV~IlGhvdaGKTTLLd~L~~t~v-~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGHe 899 (1415)
-++..|+|+|.+++|||||+|+|....+ ..|...|+|..+--..+ ...|.|||.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-------------------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-------------------DKKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-------------------cCCceeccCCcee
Confidence 4566699999999999999999987665 45666777754432221 2359999999953
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.0077 Score=60.98 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=54.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccc-cceeeeecccccccCCCCEEEEeCCCCcchhhH
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~-i~~~t~~v~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
-+++|.|.+|+|||+|+..+............ ...+-.+..+... .......+.......... ......+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~ 78 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRSL 78 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHHH
Confidence 45899999999999999999864322111000 1111111111111 000000000001111111 1112223334
Q ss_pred HhhccCcccceEEEEeccCCC-ChhHHHHHHHHH-hcCCceEEEEEe
Q 000570 905 RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 949 (1415)
Q Consensus 905 r~rgl~~aDiaILVVDa~~Gv-~~QT~E~l~llk-~~~vP~IVaINK 949 (1415)
....+......|||||-.+.+ .....+.|..+. ..++++|++.+-
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 444444455589999988777 656666665443 345678877654
|
|
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.073 Score=50.40 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=50.9
Q ss_pred EEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccccCCCeEE
Q 000570 1303 VLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1378 (1415)
Q Consensus 1303 IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~~~d~l~ 1378 (1415)
++.-+|..|.|+.|..+.+ +.+ ....|.||+.++.++..|..|+-|+|.|.+. .++..|++|-
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~----------~~i~~G~vl~ 80 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG---KTSRVKSIETFDGELDEAGAGESVTLTLEDE----------IDVSRGDVIV 80 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC---CeEEEEEEEECCcEeCEEcCCCEEEEEECCc----------cccCCCCEEe
Confidence 3455999999999999987 444 2578999999999999999999999999742 2466677663
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.058 Score=50.92 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=51.7
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
.+.|+.+.+.+..|.+..++|++|+|++||.|.+++... ..+|..|+.+.+.... ...+ +.+|..+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~-------~v~~--~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQE-------EVEE--AGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCce-------ECCE--eCCCCEEEEE
Confidence 467888888888999999999999999999998765331 1233333322222111 1122 2345566667
Q ss_pred ccccccCCCce
Q 000570 1129 GLEHAIAGTGL 1139 (1415)
Q Consensus 1129 gL~~~~aG~~~ 1139 (1415)
|+..+..|+.+
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 88877777765
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.065 Score=49.30 Aligned_cols=70 Identities=21% Similarity=0.094 Sum_probs=56.2
Q ss_pred CeEEEEEEeeceeecCCCEeecCC---ceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccc-ccCCCe
Q 000570 1301 PIVLGVDVVEGIAKVGTPICIPQR---DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH-FDIEDE 1376 (1415)
Q Consensus 1301 p~IaG~~V~~G~l~~g~~i~v~~~---~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~-f~~~d~ 1376 (1415)
+.|+.++|..|+|++|+.|.+... .-...++|.+|..++..+.++..|..||+.+...+. .+ +..||+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~--------~~~i~~Gdt 72 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGL--------NDAIRRGDT 72 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSG--------CSCSSTTEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCC--------CCCcCcCCE
Confidence 368999999999999999998221 223679999999999999999999999999876432 24 577887
Q ss_pred EE
Q 000570 1377 LV 1378 (1415)
Q Consensus 1377 l~ 1378 (1415)
|+
T Consensus 73 l~ 74 (74)
T PF03144_consen 73 LT 74 (74)
T ss_dssp EE
T ss_pred EC
Confidence 74
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.034 Score=71.64 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=82.0
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeece-----------------------eEecccccc----
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA-----------------------TYFPAENIR---- 873 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga-----------------------~~~~~~~i~---- 873 (1415)
..+..|.|+|+|...+|||+.|+.|++-.+..-..+.+|...-. .+.+...++
T Consensus 25 ~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~ 104 (657)
T KOG0446|consen 25 SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR 104 (657)
T ss_pred CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence 44667889999999999999999999865543333333321100 000110000
Q ss_pred eee-------eec---ccc---cccCCCCEEEEeCCCCc-------------chhhHHhhccCcccceEEEEeccCCCCh
Q 000570 874 ERT-------REL---KAN---ATLKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLEP 927 (1415)
Q Consensus 874 ~~t-------~~v---~~~---~~~~~~~l~iIDTPGHe-------------~F~~lr~rgl~~aDiaILVVDa~~Gv~~ 927 (1415)
..+ ..+ ... ..-..+.+++||+||.. ....|...++...+.+||.|.... ..-
T Consensus 105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~ 183 (657)
T KOG0446|consen 105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDI 183 (657)
T ss_pred hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhh
Confidence 000 000 000 01124579999999943 356778888999999999887755 445
Q ss_pred hHHHHHHHHHhc---CCceEEEEEecccc
Q 000570 928 QTIESLNLLKMR---NTEFIVALNKVDRL 953 (1415)
Q Consensus 928 QT~E~l~llk~~---~vP~IVaINKiD~~ 953 (1415)
.|.++|.+++.. +.-.|.|++|+|+.
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 566777777764 45788899999985
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.07 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred ceeEEeCCCCCHHHHHHHHHcC
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~t 848 (1415)
+++|+|.+|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.043 Score=66.35 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCC--CcchhhHHh----hccCcccceEEEEeccCCCC--hhHHHHHHHHHhcCCce---EEEEEeccccc
Q 000570 886 KVPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEF---IVALNKVDRLY 954 (1415)
Q Consensus 886 ~~~~l~iIDTPG--He~F~~lr~----rgl~~aDiaILVVDa~~Gv~--~QT~E~l~llk~~~vP~---IVaINKiD~~~ 954 (1415)
.+..+.||||.| |.+-.-|+. .-....|.+|+|--|--|-. .|....-..|.....|. -|+|+|+|.+.
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 345699999999 433332322 12455899999987765543 23333333444444443 36899999873
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=59.44 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=38.7
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCCCh---hHHHHHHHH-HhcCCceE-EEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP---QTIESLNLL-KMRNTEFI-VALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv~~---QT~E~l~ll-k~~~vP~I-VaINKiD~ 952 (1415)
+.+.||||||......+ ...+..||.+|+++....--.. .+...+..+ ...+++++ |++|+++.
T Consensus 116 yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGGF-AAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56999999986543322 2236779999999877532112 233333322 23456543 78999884
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.039 Score=65.24 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=23.2
Q ss_pred ccccCCCceeEEeCCCCCHHHHHHHHHc
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 820 ~~~lR~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..-++-||.++|--|+||||.+-+|.+
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 3445777899999999999999988863
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.028 Score=67.75 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCHHHHHHHHHcC
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t 848 (1415)
-+++|+|++|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999999864
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.096 Score=61.15 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=63.1
Q ss_pred cccCCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEecccccceeeeecccccccCCCCEEEEeCCCC--
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-- 898 (1415)
Q Consensus 821 ~~lR~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~t~~v~~~~~~~~~~l~iIDTPGH-- 898 (1415)
...|.|.+.|+|.+|.|||+|+.+++...-......+. .+ .++++.+|.-
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-------~~---------------------PVv~vq~P~~p~ 108 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-------RI---------------------PVVYVQMPPEPD 108 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-------cc---------------------cEEEEecCCCCC
Confidence 45788889999999999999999998643221111110 01 1344444431
Q ss_pred ----------------------cchhhHHhhccCcccceEEEEeccCC----CChhHHHHHHHHHh----cCCceEEEEE
Q 000570 899 ----------------------ESFTNLRSRGSGLCDIAILVVDIMHG----LEPQTIESLNLLKM----RNTEFIVALN 948 (1415)
Q Consensus 899 ----------------------e~F~~lr~rgl~~aDiaILVVDa~~G----v~~QT~E~l~llk~----~~vP~IVaIN 948 (1415)
........+.+..+.+=+||||=.|. -..+-+++++.|+. +++|+|.|.+
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 11222334566678888999997664 34455566666654 5689998876
Q ss_pred e
Q 000570 949 K 949 (1415)
Q Consensus 949 K 949 (1415)
.
T Consensus 189 ~ 189 (302)
T PF05621_consen 189 R 189 (302)
T ss_pred H
Confidence 5
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.17 Score=61.89 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=58.3
Q ss_pred ccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCcccccccccccc
Q 000570 1295 VFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1295 vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f~ 1372 (1415)
+|. ...+.|+..+|..|+|+.|..|.+. .+. -...+|.||+.++.+|.++..|+-|||.|.+.+. ..+.
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i~ 288 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR--------DEVE 288 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcH--------HhCC
Confidence 665 4567889999999999999999873 222 2357999999999999999999999999976532 1355
Q ss_pred CCCeEE
Q 000570 1373 IEDELV 1378 (1415)
Q Consensus 1373 ~~d~l~ 1378 (1415)
.|++|.
T Consensus 289 ~G~vl~ 294 (394)
T PRK12736 289 RGQVLA 294 (394)
T ss_pred cceEEe
Confidence 566664
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.022 Score=66.46 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+..+|+|+|++|+||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.064 Score=59.77 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCcch------hhHHhhccCcccc---eEEEEeccCCCChhHHH-----HHHHHHhcCCceEEEEEecccc
Q 000570 888 PGLLVIDTPGHESF------TNLRSRGSGLCDI---AILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F------~~lr~rgl~~aDi---aILVVDa~~Gv~~QT~E-----~l~llk~~~vP~IVaINKiD~~ 953 (1415)
.++.|+|+||+..| .+...+.+...|+ +|-+||+.--..|...- ++.-+.....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 46999999995433 1112223333444 34445543322333322 2333445678999999999986
Q ss_pred c
Q 000570 954 Y 954 (1415)
Q Consensus 954 ~ 954 (1415)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.024 Score=66.73 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCccc
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQ 851 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~ 851 (1415)
..+-|+++|.+++|||+++|.||...|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccc
Confidence 3445999999999999999999988775
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.034 Score=57.28 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCHHHHHHHHHc
Q 000570 827 ICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 827 iV~IlGhvdaGKTTLLd~L~~ 847 (1415)
+|+|+|++|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
|
... |
| >cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=50.42 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.6
Q ss_pred cccccceEEEEEEEEc--------CcceEEEEEEEeeEEccCCEEEEe
Q 000570 1044 FRNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1083 (1415)
Q Consensus 1044 ~~~~~~~~VlEvk~~~--------G~Gtvi~~iV~~G~Lk~GD~Ivv~ 1083 (1415)
+..++.+.|..+|.+. +.|.|+.+.|.+|+|++||.|-+.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 3457889999999998 999999999999999999999665
|
eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. |
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.13 Score=48.79 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=50.0
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccceeeecc
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~gv~i~~~ 1128 (1415)
.+.|+.+.+.+..|....++|++|+|+.||.|.++.... ..+|..|+.++.... ....+ +.+|-.+++.
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~-------~~v~~--~~aGdI~~i~ 70 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY-------QEIPS--LSAGNIGVIT 70 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc-------eECCe--eCCCCEEEEE
Confidence 467888888888999999999999999999987654321 122323322211111 11122 2345556667
Q ss_pred ccccccCCCce
Q 000570 1129 GLEHAIAGTGL 1139 (1415)
Q Consensus 1129 gL~~~~aG~~~ 1139 (1415)
|++.+..|+.+
T Consensus 71 gl~~~~~Gdtl 81 (83)
T cd04092 71 GLKQTRTGDTL 81 (83)
T ss_pred CCCCcccCCEE
Confidence 88777777765
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.13 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCceeEEeCCCCCHHHHHHHHHcCc
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 825 ~piV~IlGhvdaGKTTLLd~L~~t~ 849 (1415)
..+++|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999997643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.041 Score=59.38 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=22.6
Q ss_pred CcccceEEEEec---cCCCChhHHHHHHHHHhcCCceEEEEEec
Q 000570 910 GLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 910 ~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKi 950 (1415)
..+| |+|||= |.-..+.-.+.+..+...++|+|.+|.+-
T Consensus 94 ~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3445 778884 33334555666666666789999999887
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.14 Score=64.09 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=59.7
Q ss_pred cccc-CCCCeEEEEEEeeceeecCCCEeec-CCceeeeEEEeeccccccccccccCCCeEEEEEecCCCccccccccccc
Q 000570 1294 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1294 ~vf~-~~~p~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~~~~~~~~~~gr~f 1371 (1415)
.+|+ ...+.|+.-.|..|.|++|..|.+. .+. -...+|.||+.++.++..|..|+.|||.|.+.+. ..+
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~--------~di 366 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK--------ADI 366 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcH--------HHc
Confidence 3676 3457788889999999999999884 332 2458899999999999999999999999986532 245
Q ss_pred cCCCeEEE
Q 000570 1372 DIEDELVS 1379 (1415)
Q Consensus 1372 ~~~d~l~s 1379 (1415)
..|++|..
T Consensus 367 ~rG~VL~~ 374 (478)
T PLN03126 367 QRGMVLAK 374 (478)
T ss_pred CCccEEec
Confidence 55666644
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.085 Score=59.42 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCEEEEeCCCCcchhhHHhhccCcccceEEEEeccCCC---ChhHHHHHHHHH---hcCCceEEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL---EPQTIESLNLLK---MRNTEFIVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~rgl~~aDiaILVVDa~~Gv---~~QT~E~l~llk---~~~vP~IVaINKiD~ 952 (1415)
+.+.||||+|..+..+. ..++.+|++|+=+-.+.-- ..+|+.++..+. .+.+|+-|++|++.-
T Consensus 84 ~d~VlvDleG~as~~~~--~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 84 FDFVLVDLEGGASELND--YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCEEEEeCCCCCchhHH--HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 46899999997665533 3345688776544332211 234555554332 346899999999874
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.12 Score=60.11 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
++|+|+|..|+|||||+.+|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.059 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred CceeEEeCCCCCHHHHHHHHHc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~ 847 (1415)
++.+|.|+.|+|||||||+|..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
|
|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.15 Score=57.06 Aligned_cols=66 Identities=17% Similarity=-0.059 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCcchhhHH-hhcc--CcccceEEEEeccCCCChhHHHHHHHHHhcCCc-eEEEEEecccc
Q 000570 888 PGLLVIDTPGHESFTNLR-SRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 953 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr-~rgl--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiD~~ 953 (1415)
+.+.|||||.......+. ...+ ..+|.+|||+........++...+..++..+++ .-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 679999999754333222 2222 246899999998877778889999999999876 46899998753
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.18 Score=62.34 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=56.3
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceeecCCCEee-cCCceeeeEEEeeccccccccccccCCCeEEEEEecC
Q 000570 1285 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGS 1358 (1415)
Q Consensus 1285 p~~l~i~~~~vf~-~~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~i~Slk~~k~~V~~~~kG~e~gI~i~~~ 1358 (1415)
|..+.|. .+|+ ...+.|+.-+|..|.|+.|..|.+ +.+ ...+|.||+.++.++.+|..|+-|||.|.+.
T Consensus 227 p~r~~i~--~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i 297 (426)
T TIGR00483 227 PLRIPIQ--DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGV 297 (426)
T ss_pred CcEEEEE--EEEecCCCeEEEEEEEccceeecCCEEEECCCC---cEEEEEEEEECCcccCEEcCCCEEEEEECCC
Confidence 4444444 3676 455778888999999999999998 555 3579999999999999999999999999764
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.24 Score=55.18 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcchhhHHh-hccCcccceEEEEeccCCCC---hhHHHHHHHHHhc-CCce-EEEEEeccc
Q 000570 888 PGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTEF-IVALNKVDR 952 (1415)
Q Consensus 888 ~~l~iIDTPGHe~F~~lr~-rgl~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~-~vP~-IVaINKiD~ 952 (1415)
.-+.||||||+.....+.. ..+..||.+|+|+....--. ......+..++.. ++++ .|++|+++.
T Consensus 117 yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 117 LDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 5699999998764333211 11247999999997643111 2223334444332 4443 489999885
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.45 Score=45.41 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeEEccCCEEEEeccCCcceeehhhhcCCCCCccceeeeeeeehhhhccccc---eee
Q 000570 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG---IKI 1125 (1415)
Q Consensus 1049 ~~~VlEvk~~~G~Gtvi~~iV~~G~Lk~GD~Ivv~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~keV~aa~g---v~i 1125 (1415)
.+.|..+|.+.+.|+++.++|.+|+|++|+.|.+++.+..+++ ..+.+.+.+...+..+.. |.|
T Consensus 2 ~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~-------------g~i~sl~~~~~~v~~a~~G~ecgi 68 (84)
T cd03692 2 EAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYE-------------GKISSLKRFKDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEE-------------EEEEEEEEcCcccCEECCCCEEEE
Q ss_pred eccccccccCCCceEE
Q 000570 1126 TAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1126 ~~~gL~~~~aG~~~~v 1141 (1415)
.+.+++....|+.+.+
T Consensus 69 ~l~~~~d~~~Gdvi~~ 84 (84)
T cd03692 69 TLENFNDIKVGDIIEA 84 (84)
T ss_pred EEeCcccCCCCCEEEC
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.16 Score=62.60 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeecee-EecccccceeeeecccccccCCCC------EEEEeCC
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-YFPAENIRERTRELKANATLKVPG------LLVIDTP 896 (1415)
Q Consensus 824 R~piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~-~~~~~~i~~~t~~v~~~~~~~~~~------l~iIDTP 896 (1415)
++.+|+|+|.+|+||||+...| ...+|.. .+..+.++..-..+.....+..-+ +..+++|
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~L-------------A~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~ 320 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASAL-------------AYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPP 320 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHH-------------HHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCc
Q ss_pred CCc-----chhhHHhhccCcccce----------------EEEEeccCCCChhHHHHHHHHHhcCCceEEEEEecccccC
Q 000570 897 GHE-----SFTNLRSRGSGLCDIA----------------ILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG 955 (1415)
Q Consensus 897 GHe-----~F~~lr~rgl~~aDia----------------ILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD~~~~ 955 (1415)
|+. ........+..+|..+ -+||+..| +.|..+.........-+||.|.++.-+..
T Consensus 321 ~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVH-l~P~~i~~~~~~~~~~i~flv~isdeeeH-- 397 (475)
T PRK12337 321 GEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVH-LVPGYLRHPYQAGALVVPMLVTLPDEALH-- 397 (475)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCC-CCHHHHHHHHhcCCceEEEEEEECCHHHH--
Q ss_pred CccCCChhHHHHHHhhhHHHHHHHHHH-------------------HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCC
Q 000570 956 WKTCRNAPIVKAIKQQNTDVQNEFNMR-------------------LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTS 1016 (1415)
Q Consensus 956 w~~~~~a~~~~~l~~q~~~v~~ef~~~-------------------l~~I~~~L~e~gl~~e~~~~~~~~g~~v~iVpvS 1016 (1415)
+..|..+ +..|.+.|....-. ..+|+|
T Consensus 398 --------------------~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~~-----------~~ipvI--- 443 (475)
T PRK12337 398 --------------------RRRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLARQ-----------EGVPVL--- 443 (475)
T ss_pred --------------------HHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHHH-----------cCCCee---
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000570 1017 AISGEGIPDLLLLLVQWTQKTMVEKLTF 1044 (1415)
Q Consensus 1017 A~tGeGI~dLl~~L~~l~~~~l~e~l~~ 1044 (1415)
.+.+|+.-++.++..+-..+...+.+
T Consensus 444 --~n~nid~tv~~~l~~i~~~~~~~~~~ 469 (475)
T PRK12337 444 --PGEDLDESIDKALEVVLRRVMAALTP 469 (475)
T ss_pred --cCccHHHHHHHHHHHHHHHHHHhcCH
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.095 Score=56.07 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred CceeEEeCCCCCHHHHHHHHHcCcccccccCceeEeeceeEe----cccccceeeeecccccccCCCCE-EEEeCCCCcc
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYF----PAENIRERTRELKANATLKVPGL-LVIDTPGHES 900 (1415)
Q Consensus 826 piV~IlGhvdaGKTTLLd~L~~t~v~~geagGITq~iga~~~----~~~~i~~~t~~v~~~~~~~~~~l-~iIDTPGHe~ 900 (1415)
++|+|+|+.|+|||||+.+|.......|..-|+-.+.+.... ..+..+.+........-.....+ ++..++....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa~~v~~~~~~~~~~~~~~~~~~~ 81 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPRRWALIRELRDEPE 81 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCCCEEEEecCCeEEEEEEcCCCcc
Q ss_pred hhhHHhhccCcccceEE
Q 000570 901 FTNLRSRGSGLCDIAIL 917 (1415)
Q Consensus 901 F~~lr~rgl~~aDiaIL 917 (1415)
........+..+|++|+
T Consensus 82 ~~~~~~~~~~~~D~vlv 98 (159)
T cd03116 82 PDLLLLLRLLDVDLVLV 98 (159)
T ss_pred ccHHHHhhCCCCCEEEE
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1415 | ||||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 6e-99 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 3e-96 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 1e-30 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 8e-25 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 1e-19 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 9e-09 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 4e-06 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 4e-06 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 5e-06 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 5e-06 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 9e-06 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 1e-05 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-05 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 7e-05 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 7e-05 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 7e-05 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 2e-04 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 2e-04 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 3e-04 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 7e-04 |
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 833 bits (2155), Expect = 0.0
Identities = 213/596 (35%), Positives = 349/596 (58%), Gaps = 21/596 (3%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--K 880
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I + K
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+ +PGL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE--LQCTVLEVKVI 1058
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L + + T+LEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 1059 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQI 1117
G G TID V+ +G+L + D I + + I T IR+LL P P++E+R + + ++
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 1118 KAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQA 1177
AA GIKI A G++ +AG+ L VV + + + +ED+K ID GV V+A
Sbjct: 303 VAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIK-----IDTDEAGVVVKA 357
Query: 1178 STLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1237
TLGSLEA+++ L+ + +P+ IG V ++DV+ A + L++ + Y I+AF+VKV P
Sbjct: 358 DTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP 415
Query: 1238 EARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN 1297
A + + +K+F ++IY L +++ ++ ++EEKK++ + + P ++++P VF
Sbjct: 416 SAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFR 475
Query: 1298 KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357
+ P + GV+V+ G+ + G P+ D +G + S+++ + + +A +GQK A+ I
Sbjct: 476 QSKPAIGGVEVLTGVIRQGYPLMN--DDGETVGTVESMQDKGENLKSASRGQKVAMAI-- 531
Query: 1358 SNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFK 1413
+ ++G+ D L I +LK DL+ +E L+ K+ + +
Sbjct: 532 -----KDAVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKR 582
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 3e-53
Identities = 132/594 (22%), Positives = 217/594 (36%), Gaps = 126/594 (21%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
RSP+ IMGHVD GKT LLD +R T V EAGGITQ IGA + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLKMR 939
+DTPGH +F+ +R+RG+ + DI ILVV +M QT+ES+ K
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM----KQTVESIQHAKDA 103
Query: 940 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL 999
+ ++A+NK D+ A K +K++ L + E
Sbjct: 104 HVPIVLAINKCDK-------AEADPEK-VKKE------------------LLAYDVVCED 137
Query: 1000 YYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLEVK 1056
Y G+ V SA++GE + L + M+E K ++ TV+E
Sbjct: 138 Y-----GGDV-QAVHVSALTGENMMALAEATIA----LAEMLELKADPTGAVEGTVIESF 187
Query: 1057 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH---------------- 1100
+G G ++ G L +G +V G +R + +
Sbjct: 188 TDKGRGPVTTAIIQRGTLRKGSILVA----GKSWAKVRLMFDENGRAVNEAYPSMPVGII 243
Query: 1101 -----PM-----------KELRVKGTYLHHKQ--IKAAQGIKITAQGLEHAIAG--TGLY 1140
P R + ++Q K + +K+ + +
Sbjct: 244 GWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDRE 303
Query: 1141 VVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEG------VCVQASTLGSLEALLEFLK--- 1191
G E + E + + + E V V+ GS+EA+L +
Sbjct: 304 KYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYD 363
Query: 1192 -SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKI 1250
S ++ + +G + + DV A + I F+V ++LA + GVKI
Sbjct: 364 ASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLAAKKGVKI 417
Query: 1251 FIADIIYHLFDQFTAYIN-NLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVV 1309
+ IIY L + ++ L + EA +L KK P+ G V
Sbjct: 418 KLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS---ILATFSITEGKKKVPVA-GCRVQ 473
Query: 1310 EGIAKVGTPICIPQRDFIDI--GRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1361
+G + + R+ I G + S++++ K G + + E
Sbjct: 474 KGQIEKQKKFKL-IRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIE 526
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 1e-47
Identities = 130/487 (26%), Positives = 211/487 (43%), Gaps = 117/487 (24%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
R+P+ IMGHVD GKT LL+ IR T V GEAGGITQ IGA Y
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA-Y----------------- 44
Query: 884 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVV----DIMHGLEPQTIESLNLLK 937
++ ++ +DTPGH +FT++R+RG+ DI +LVV +M PQTIE++ K
Sbjct: 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM----PQTIEAIQHAK 100
Query: 938 MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT 997
+VA+NK+D K + VK +L + G+
Sbjct: 101 AAQVPVVVAVNKID-----KPEADPDRVK---------------------NELSQYGILP 134
Query: 998 ELYYKNKDRGETFNIVPTSAISGEGIPDLL--LLLVQWTQKTMVE-KLTFRNELQCTVLE 1054
E + G V SA +G GI +LL +LL Q ++E K + V+E
Sbjct: 135 E------EWGGESQFVHVSAKAGTGIDELLDAILL----QAEVLELKAVRKGMASGAVIE 184
Query: 1055 VKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHH 1114
+ +G G V++ G LH+GD IV+CG + +RA+ G
Sbjct: 185 SFLDKGRGPVATVLVREGTLHKGD-IVLCGFE---YGRVRAMRNE--------LG----- 227
Query: 1115 KQIKAAQ-GIKITAQGLEHA-IAGTGLYVVGPDDD----------LEDVKEEAMEDMKSV 1162
+++ A I + GL AG + VV D+ +E + +
Sbjct: 228 QEVLEAGPSIPVEILGLSGVPAAGDEVTVV--RDEKKAREVALYRQGKFREVKLARQQKS 285
Query: 1163 -----MSRIDKSGE----GVCVQASTLGSLEAL---LEFLKSDAVKIPVSGISIGPVHKK 1210
+ + GE + ++A GS+EA+ L L +D VK+ + G +G + +
Sbjct: 286 KLENMFANM-TEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITET 344
Query: 1211 DVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNL 1270
D A+ A ++ F+V+ AR++ E + + +IY+L D+ A ++ +
Sbjct: 345 DATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGM 398
Query: 1271 KEEKKRE 1277
+ ++
Sbjct: 399 LSPELKQ 405
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 2e-39
Identities = 77/212 (36%), Positives = 105/212 (49%), Gaps = 54/212 (25%)
Query: 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANA 883
R P+ IMGHVD GKT LLD IR + V E EAGGITQ IGA Y
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGA-Y----------------- 48
Query: 884 TLKVPGLLV--IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT 941
+ V + +DTPGHE+FT +R+RG+ + DI ILVV G+ PQT+E++N K N
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV 108
Query: 942 EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY 1001
IVA+NK+D+ + N D +++ +L E + E +
Sbjct: 109 PIIVAINKMDK----------------PEANPD----------RVMQELMEYNLVPEEW- 141
Query: 1002 KNKDRGETFNIVPTSAISGEGIPDLL--LLLV 1031
G+T SA + EG+ LL +LLV
Sbjct: 142 ----GGDTI-FCKLSAKTKEGLDHLLEMILLV 168
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 4e-13
Identities = 102/650 (15%), Positives = 186/650 (28%), Gaps = 191/650 (29%)
Query: 694 DDDDEEWDAKSWD--DVNL-NVKGAFDDEE-ADSEPEPLVKKEIKSAIPSPRDAGEVYCF 749
D + E + D V FD ++ D L K+EI I S
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 750 ILPLSRYRLFCFLFFILVVLI--YLFSAEKPAVAVKKAIPEQPLKS----QDAVTRKKEP 803
L + F+ VL Y F + ++ P + +D + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 804 AAK---SKEPEVDATPKQAEENLRS-PICCIMGHVDTGKTKL-LDCIRGTNVQEGEAGGI 858
AK S+ +QA LR I G + +GKT + LD VQ I
Sbjct: 126 FAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 859 ---------------------TQQIGATY-----------FPAENIRERTRELKANATLK 886
QI + +I+ R L + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 887 VPGLLVID---TPGH-ESFTNLR------SRGSGLCDIA-------ILVVDIMHGLEPQT 929
LLV+ +F NL +R + D I + L P
Sbjct: 245 -NCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD- 301
Query: 930 IESLNL----LKMRNTE----------FIVAL------NKVDRLYGWKTCRNAPIVKAIK 969
E +L L R + +++ + + WK + I+
Sbjct: 302 -EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 1029
+ +V R +++ + ++ P SA IP +LL
Sbjct: 361 -SSLNVLEPAEYR---------------KMF-------DRLSVFPPSA----HIPTILLS 393
Query: 1030 LVQWTQKTMVEKLTFRNELQCTVLEVK-----VIEGHGTTIDV---VLVNGVLHEGDQIV 1081
L+ W + + N+L L K I +++ + LH IV
Sbjct: 394 LI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIV 450
Query: 1082 VCGLQGPIVTTIRALLTPHPMKELRVKG---TYL-HH-KQIKAAQGI------------- 1123
+ + + + +++ HH K I+ + +
Sbjct: 451 DH------YNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 1124 --KITAQGLEHAIAGTGLYVVGPDDDLEDVK--EEAMEDMKSVMSRIDKSGEGVCVQAST 1179
KI +G+ L + L+ +K + + D R+
Sbjct: 504 EQKIRHDSTAWNASGSIL------NTLQQLKFYKPYICDNDPKYERL------------- 544
Query: 1180 LGSLEALLEFLKSDAVKIPVSGISIGPVHKK--DVMRASVMLEKKKEYAT 1227
+ A+L+FL + + K D++R ++M E + +
Sbjct: 545 ---VNAILDFLPKIEENL---------ICSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 55/465 (11%), Positives = 135/465 (29%), Gaps = 143/465 (30%)
Query: 920 DIMHGLEPQTIESL----------NLLKMRNTEFIV----ALNKVDRLYGWKTCR-NAPI 964
DI+ E +++ ++L + I+ A++ RL+ W +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEM 78
Query: 965 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024
V+ ++ + + I T+ ++ M T +Y + +DR +N
Sbjct: 79 VQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQV-------FA 127
Query: 1025 DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG---HG------TTIDVVLVNGVLH 1075
+ ++ KL R L E++ + G T + V
Sbjct: 128 KYNV-----SRLQPYLKL--RQALL----ELRPAKNVLIDGVLGSGKT----WVALDVCL 172
Query: 1076 EGDQIVVCGLQGPI-------VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1128
V C + I + +L +++L + + + IK+
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1129 GLEHAIAG--------TGLYVVGPDDDLEDVKE-EAMEDMKS---VMSRIDKS------- 1169
++ + L V+ ++++ K A ++ + +R K
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAF-NLSCKILLTTR-FKQVTDFLSA 283
Query: 1170 --GEGVCVQASTLG-----SLEALLEFLKSDAVKIPVSGISIGPVH-------------- 1208
+ + ++ LL++L +P ++ P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 1209 -----------KKDVMRASV-ML---EKKKEYATILAF--DVKVTP-------------E 1238
++ +S+ +L E +K + + F + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 1239 ARELAEELGVKIFIA-DIIYHLFDQFTAYINNLKEEKKREAADEA 1282
+ +L + + T I ++ E K + +E
Sbjct: 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKVKLENEY 443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-08
Identities = 92/639 (14%), Positives = 176/639 (27%), Gaps = 178/639 (27%)
Query: 289 GRMRSSAFDLLENEDEDDDEKKD---KDEEDEPIIFTDKKKKTKSSKKTVSSFSEV--LL 343
G + D+L +D + KD +D P K++ S E+ ++
Sbjct: 12 GEHQYQYKDILS--VFEDAFVDNFDCKDVQDMP--------------KSILSKEEIDHII 55
Query: 344 DEENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKP 403
++ V L + +KQ+ VE + ++N +++ K E+ +P
Sbjct: 56 MSKDAVSGTLRLFWT---LLSKQEEMVQKFVE-EVLRINYKFLMSPI------KTEQRQP 105
Query: 404 RSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASK 463
S T + +++ K V +P K
Sbjct: 106 -SMMTRMYIEQRDRL-----YNDNQVFAKYNVSRLQPY--------------------LK 139
Query: 464 KKKKKKEKEKE------------KKAAAAAAAEDKQQGKSEAVETKKND-------GKSK 504
++ E K A V+ K +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------YKVQCKMDFKIFWLNLKNCN 193
Query: 505 GPEKKMSKQVREMQEALARR--KEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRR 562
PE + EM + L + R +LR + RR
Sbjct: 194 SPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS------------IQAELRR 236
Query: 563 --KKEKEKEKLL-----KKKQEGK--------LLTGKQKEEARRLEAM-RNQFLAKGIPL 606
K + + LL + + LLT + K+ L A +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 607 PTGDKEAASKRPKY-QTKKKSAHHQANGAVPLKEDSI-ES-----------KEKEQEKQE 653
E S KY + + + P + I ES K +K
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 654 TLLEVDVGETEKVEEGE------SLTVEEKPEIADAPKE-------NEVEEEDDDDDEEW 700
T++E + +E E L+V P A P + ++ + +
Sbjct: 357 TIIESSL---NVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 701 DAKS-----WDDVNLNVKGAFDDEEADSEPEPLVKKEI-----------KSAIPSPRDAG 744
S + +++ + + + E E + + I + P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 745 EVYCFI-------LPLSRYRLFCFLF----FILVVLIYLFSAEKPAVAVKKAIPEQPLKS 793
Y I R LF +F F+ + + +A + ++ + Q LK
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKF 529
Query: 794 QDAVTRKKEPAAKSKEPEVDATPKQAEENL-RSPICCIM 831
+P + + + EENL S ++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 60/492 (12%), Positives = 128/492 (26%), Gaps = 132/492 (26%)
Query: 3 RKKP---------SVRDEANLPAVAQGG-GKSKKKAVVIDDDEY-----------SIGTE 41
R +P +R N+ G GK+ V + ++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 42 LTEEPQEEEAVNNNKKKKGKKGNQKNLQAEDDDSKGEEGEENDAEAIVFTGKKKSKGKKN 101
+ E E + N + D S + + +A + + K
Sbjct: 193 NSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSK 241
Query: 102 GGNNAL-------SKS---AFE-----LLEGADKDDDDDDSGDKLSKGKYVSL--ASKGK 144
N L + AF LL K D S + ++SL S
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---ATTTHISLDHHSMTL 298
Query: 145 TKEGLKKGWNKSGSLFAAAAFDAVDGGSESEVIDDDH-----SVEESDDDDDDVVEKSKK 199
T + + SL + + + ES D + K
Sbjct: 299 TPD-------EVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 200 GGKKKSGTTGFSASAFDLLDDED------------EDVR----------EDKDEEDEPVI 237
K T +S ++L+ + D + D V+
Sbjct: 350 VNCDKLTTI-IESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 238 FTDKKKKS--KKSGKNSSTF--DLLVNENDDVKEDKDEDDEPITFTDKKKKSNKGGRMRS 293
K S +K K S+ + + ++ + + + K +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD----- 462
Query: 294 SAFDLLENEDEDDD----------EKKDKDEEDE--PIIFTD------KKKKTKSSKKTV 335
DL+ D + + E ++F D K + ++
Sbjct: 463 ---DLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 336 SSFSEVLLD----EENVVEDAPVLSDVSGAVDTKQQSGDSSIVESDDFKV------NKGE 385
S L + + ++ P + A+ + +++ S + + E
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 386 VVAQTSKNKKKK 397
+ + + + ++
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-04
Identities = 78/618 (12%), Positives = 170/618 (27%), Gaps = 214/618 (34%)
Query: 541 KEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK-------LLTGKQKEEARRL- 592
+ + K ++++ + ++E + ++ K L KQ+E ++
Sbjct: 30 VDNFDCKDVQDMPKSI------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 593 -EAMRN--QFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQ 649
E +R +FL P+ T ++ + Y ++ + N + ++ +
Sbjct: 84 EEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYL 138
Query: 650 EKQETLLEVDV------------GET---------EKVEE-----------GESLTVEEK 677
+ ++ LLE+ G+T KV+ + E
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 678 PEI---------------ADAPKENEVEEEDDDD------------------DEEWDAKS 704
E+ +D ++ +AK+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 705 WDDVNLNVK--------GAFDDEEA--------DSEPEPLVKKEIKSAIPS--------- 739
W+ NL+ K D A D L E+KS +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 740 PRDAGEVYCFILPLSRYRLFCFLFFILVVLIYLFSAEKPAVAVKKAIPEQPLKSQ----- 794
PR+ P + + + I +
Sbjct: 319 PREV----LTTNPR---------------RLSIIAES---------IRDGLATWDNWKHV 350
Query: 795 --DAVTRKKEPAAKSKEPEVDATPKQAEENLR-----SPICCIMGHVDTGKTKLLDCIRG 847
D +T E + EP ++ + L + I T LL +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPPSAHI----------PTILL-SLIW 396
Query: 848 TNVQEGEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPGHESFTNL 904
+V + + + ++ + +E T + + +K+ + H S +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVDH 452
Query: 905 RSRGSGLC--DIAILVVD------IMHGL-EPQTIESLNLLKMR--NTEFI--------V 945
+ D+ +D I H L + E + L +M + F+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 946 ALNKVD---------RLYGWKTCRNAP----IVKAIK----QQNTDVQNEFNMRLVQIVT 988
A N + Y C N P +V AI + ++ L++I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 989 QLKEQGMNTELYYKNKDR 1006
+++ ++ +
Sbjct: 573 MAEDEA-----IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-04
Identities = 72/526 (13%), Positives = 148/526 (28%), Gaps = 135/526 (25%)
Query: 216 DLLDDEDEDVRED---KDEEDEP-VIFTDKKKKSKKSGKNSST-----FDLLVNENDD-V 265
D+L ++ ++ KD +D P I + ++ K++ + F L+++ ++ V
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 266 K---EDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIFT 322
+ E+ + K + M + + E++D+ D +
Sbjct: 80 QKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMY----------IEQRDRLYNDNQVF-- 126
Query: 323 DKKKKTKSSKKTVSSFSEVLL---DEENVVEDAPVLSDVSG---------AVDTKQQSGD 370
K S + + LL +NV+ + G A+D
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLGSGKTWVALDVCL---S 173
Query: 371 SSIVESDDFKV--------NKGEVV--------AQTSKNKKKKKEKEKPRSERTAQEEDD 414
+ DFK+ N E V Q N + + R + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 415 LEKILAELGQGPAPQEEKV-----QVQPPEPVAPPD-------------AADEKVGEEEK 456
L ++L E VQ + + D
Sbjct: 234 LRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
S ++ K Q E + T P +++S
Sbjct: 288 HIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--------NP-RRLSIIAES 336
Query: 517 MQEALAR----RKEAEERKKREEEERLR--KEEEERKRLEELERQAEEAK---------- 560
+++ LA + ++ E L + E RK + L A
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 561 RRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKR--P 618
+ + ++ K + L+ + KE + ++ K + ++ A +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELK---VKLENEYALHRSIVD 451
Query: 619 KYQTKKKSAHHQANGAVPLKEDS-IES------KEKEQEKQETLLE 657
Y K ++ +P D S K E ++ TL
Sbjct: 452 HYNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 6e-13
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 829 CIMGHVDTGKTKLLDCI---------------RGTNVQEGEAG-GITQQIGAT----YFP 868
++ HVD GK+ L D + R T+ ++ E GIT I +T Y
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGIT--IKSTAISLYS- 79
Query: 869 AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 928
E E +E+K + +ID+PGH F++ + + D A++VVD + G+ Q
Sbjct: 80 -EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
Query: 929 TIESLNLLKMRNTEFIVALNKVDRL 953
T L + +V +NKVDR
Sbjct: 139 TETVLRQALGERIKPVVVINKVDRA 163
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-12
Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 78/300 (26%)
Query: 832 GHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 884
GH+D GKT L + + E + GIT IG + F EN R
Sbjct: 26 GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR----------- 74
Query: 885 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI 944
+ ++D PGH + + D+A++VVD G + QT E + +L N I
Sbjct: 75 -----ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNK 1004
V + K D E R I+ + ++
Sbjct: 130 VVITKSDN----------------------AGTEEIKRTEMIMKSI----------LQST 157
Query: 1005 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---FRNELQCTVLEVKVIEGH 1061
+ +I+P SA +G G+ +L L++ + + T F+ + I+G
Sbjct: 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFK----MPLDHAFPIKGA 213
Query: 1062 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1121
GT + + G++ GD++ V + +V+ + + A+
Sbjct: 214 GTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAK 257
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 36/234 (15%), Positives = 89/234 (38%), Gaps = 25/234 (10%)
Query: 364 TKQQSGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELG 423
Q + + +V ++ ++E + + A+ + +K+ L
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL- 926
Query: 424 QGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAA 483
+ + +Q+Q K+ +E+ +E + +K E + +
Sbjct: 927 -----ENKIMQLQ------------RKI-DEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 484 EDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEE 543
++ + E E K + +++++K +E+ + +K EE + + E +
Sbjct: 969 VERLRMSEE--EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 544 EERKRLEELERQAEEAKRRKKEKEKE--KLLKKKQEG--KLLTGKQKEEARRLE 593
E +++ L+ + EE RR ++ KE + ++KK K L +E R +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 26/247 (10%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKND-GKSKGPEKKMS 511
+ ++ K +K A + V + E K
Sbjct: 850 RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909
Query: 512 KQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK---EK 568
K E + E K + + ++ ++ +E K L E E + EK +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 569 EKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAH 628
E+L ++E K T + + +R + K + +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKEL------------HQTQTEKKTIEEWADKY 1017
Query: 629 HQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENE 688
+ E E ++Q TLL+ + E + ++ + E E + +
Sbjct: 1018 ----------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 689 VEEEDDD 695
+E + +D
Sbjct: 1068 LELDLND 1074
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 34/206 (16%)
Query: 843 DCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902
+ + + G + + E E ++ K ++IDTPG
Sbjct: 66 EFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETF 123
Query: 903 NLRSRGSGLCD-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDR 952
G L + + + + D +P + + I ALNKVD
Sbjct: 124 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183
Query: 953 LYGWKT------CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR 1006
L + + + A + + +Q ++ ++T E+
Sbjct: 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT---------EVL------ 228
Query: 1007 GETFNIVPTSAISGEGIPDLLLLLVQ 1032
++ SA + EG DL L +
Sbjct: 229 -PPVRVLYLSAKTREGFEDLETLAYE 253
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 53/281 (18%), Positives = 114/281 (40%), Gaps = 16/281 (5%)
Query: 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE 526
K +E+E +A K++ + E K+ + K ++ + ++Q E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 527 AEER------KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKL 580
AEE KK+E EE L E E R EE Q +A+++K +++ L ++ +E +
Sbjct: 911 AEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 581 LTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKED 640
K + E + + ++ +K K + + + +E+
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDD----ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 641 SIESKEKEQEKQETL---LEVDVGETEK-VEEGESLTVEEKPEIADAPKENEVEEEDDDD 696
++ K + K E++ LEV + + EK +E E + + + E +D ++ + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 697 DEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSAI 737
+ AK +++ +DE + +E++S I
Sbjct: 1086 LKAQLAKKEEELQ-AALARLEDETSQKNNALKKIRELESHI 1125
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 31/326 (9%)
Query: 387 VAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDA 446
V + + + K E+ + ER + E +L+++ + Q EEK +Q
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNLLQE-------KL 901
Query: 447 ADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGP 506
E E EE KK++ +E + A E+++ + +A E KK +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA-EKKKMQQQMLDL 960
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEE------ERKRLEEL------ER 554
E+++ ++ Q+ + A+ + K+ E++ L E++ ERK LEE
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 555 QAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAA 614
EE K + K K K E ++ K+++ + LE ++ + + L E
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 615 SKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLTV 674
++ + + + + A+ ED K +K L + + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL-------ESHISDLQEDLE 1133
Query: 675 EEKPEIADAPKEN-EVEEEDDDDDEE 699
EK A K+ ++ EE + E
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTE 1159
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 31/216 (14%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPP 444
E + + +K + ++ + +E +L + EE+V +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS----DLTTNL 1020
Query: 445 DAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSK 504
+EK K ++ + + + K+++ + + K++ + E+ + + + +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 505 GPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQ--AEEAKRR 562
++ Q+ + +E L E + ++ L+K E + +L+ +E+A R
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 563 KKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
K EK+K L ++ + K + + +R
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 46/287 (16%), Positives = 102/287 (35%), Gaps = 42/287 (14%)
Query: 308 EKKDKDEEDEPIIFTDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPVLSDVSGAVDTKQQ 367
E + ++EE+ +KKK + + + E L +EE + L D K +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQ---QQMLDLEEQLEEEEAARQK---LQLEKVTADGKIK 986
Query: 368 SGDSSIVESDDFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEE--DDLEKILAELGQG 425
+ I+ +D + T + K ++ + +EE +L K+ +
Sbjct: 987 KMEDDILIMED------QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 426 PAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAED 485
+ E ++ ++E++ +K K+K E E AE
Sbjct: 1041 ISELEVRL-------------------KKEEKSRQELEKIKRKL--EGESSDLHEQIAEL 1079
Query: 486 KQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ Q + K + + + ++ + + AL + +E E + +E L E+
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS-DLQEDLESEKAA 1138
Query: 546 RKRLE----ELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
R + E +L + E K ++ +++ G K ++
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY--KDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 35/211 (16%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Query: 395 KKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEE 454
+++ E+E+ ++ E+ + + ++ E++ E E+ +
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-----RKLLEERVSD 1015
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDK-QQGKSEAVETKKNDGKSKGPEKKMSKQ 513
A ++K K K K K + + E + ++ + E +K K +G + +Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 514 VREMQEALARRKEAEERKKREEEERLRKE-EEERKRLEELERQAEEAKRRKKEKEKEKLL 572
+ E+Q +A K + KK EE + E+E + ++ E + + + E L
Sbjct: 1076 IAELQAQIAELKA-QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ-EDLE 1133
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQFLAKG 603
+K ++++ + LEA++ +
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 14/181 (7%)
Query: 378 DFKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQP 437
+ V + + EK + + E +K +A L Q +++
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYNRILKKLE- 899
Query: 438 PEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETK 497
+ A K E+ S + K K E + E + ++ +
Sbjct: 900 -------NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 498 KNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE 557
+ + + A++ + + L E E +++E+L
Sbjct: 953 LTELN----YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Query: 558 E 558
Sbjct: 1009 H 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ ++ E++ A A E K+Q K + K N K +
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK-------LE 899
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+++ + +L+ E + LE Q+ + E
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQ 630
E E A + + A +R + HH
Sbjct: 960 GVPE-------LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 17/201 (8%), Positives = 50/201 (24%), Gaps = 18/201 (8%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPP 438
++ QT K++ P + + + + +++ Q
Sbjct: 824 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ-- 881
Query: 439 EPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKK 498
+ + + K + + A + EA + +
Sbjct: 882 ------KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 499 NDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558
+ + ++ LA+ E E ER ++ + + +
Sbjct: 936 --------QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 987
Query: 559 AKRRKKEKEKEKL--LKKKQE 577
+ + +K+ L
Sbjct: 988 NTLLAELERLQKIEDLHHHHH 1008
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 2e-09
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA-----KRRKKEKEKE 569
R QE + RK EE++KR +E + + +E +A++ +R+ ++ EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQE----LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 570 KLLKKKQEGKLLTGKQKEE 588
K+ + + +Q +
Sbjct: 135 KINNRIADKAFY--QQPDA 151
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 6e-08
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 506 PEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE--RKRLEELERQAEEAKRRK 563
PE + K E ++ L A + ++E E+ +K+ EE +++ E++E K +
Sbjct: 84 PES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------KNKI 136
Query: 564 KEKEKEKLLKKKQEGKLL 581
+ +K ++ + ++
Sbjct: 137 NNRIADKAFYQQPDADII 154
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 11/93 (11%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ +E + +K ++++ K ++ AA+ +Q+ + +A +K + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASK--VMEQEWREKA-------------KKDLEE 122
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEE 545
+ E + + K R ++ ++ + +
Sbjct: 123 WNQRQSEQVEKNK-INNRI--ADKAFYQQPDAD 152
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 3e-08
Identities = 29/212 (13%), Positives = 73/212 (34%)
Query: 444 PDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKS 503
PD ++ + E A + + + T + +
Sbjct: 614 PDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAA 673
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
K +++ ++ R E ++E K R+E L + + +AE
Sbjct: 674 KHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAA 733
Query: 564 KEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTK 623
+ + + +L+ K + + L + + E R++ +R L + A + + K
Sbjct: 734 RIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAK 793
Query: 624 KKSAHHQANGAVPLKEDSIESKEKEQEKQETL 655
K +A G +++ ++ E + + ++L
Sbjct: 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 5e-07
Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 2/188 (1%)
Query: 406 ERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKK 465
+ + E D A E Q +++ + + + +
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSE 698
Query: 466 KKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRK 525
+K KE + A + A E K+EA E++ + +G + +++ A+
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEA-ESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Query: 526 EAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEKLLKKKQEGKLLTGK 584
E E KK E E + + + + ++ A EAK+ K+ E +
Sbjct: 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817
Query: 585 QKEEARRL 592
Q + + L
Sbjct: 818 QVKLLQSL 825
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 6e-06
Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 25/247 (10%)
Query: 385 EVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQE---------EKVQV 435
VA + + K R E + L Q V V
Sbjct: 581 GAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDV 640
Query: 436 QPPEPVAPPDAAD-EKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAV 494
Q EPV ++ + E + S++ K E ++ ++ A K +SEA
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Query: 495 ETKKNDGKSKGPEKKMSKQVREMQEALAR---------------RKEAEERKKREEEERL 539
+ +K + + + EA +R + +A+ E E
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 540 RKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRNQF 599
R ++ L Q E + ++ + K K+ + L +
Sbjct: 761 RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Query: 600 LAKGIPL 606
L + + L
Sbjct: 821 LLQSLGL 827
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-04
Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 9/177 (5%)
Query: 523 RRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLT 582
+ ++R + + ++ E +E + E R +++ + +L ++K +
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQ--RLEQEARGRLERQKILDQSEA 699
Query: 583 GKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSI 642
K ++E LEAM + G + A + R + + A +A +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA-------QALA 752
Query: 643 ESKEKEQEKQETLLEVDVGETEKVEEGESLTVEEKPEIADAPKENEVEEEDDDDDEE 699
E E E+ + + E+++ E E ++ + + E +
Sbjct: 753 IETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRD 809
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 103/316 (32%)
Query: 825 SPICCI--MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
S + + +G +G+T L + G + I E
Sbjct: 19 SHMANVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRN--------- 61
Query: 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMR 939
++ +D + + DIA+L + + T E + L +
Sbjct: 62 -------MVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLD----AHTGECIIALDLL 110
Query: 940 NTEFI-VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE 998
+ +AL + D + ++ +LK T
Sbjct: 111 GFKHGIIALTRSDS----------------------THMH---AIDELKAKLKVITSGTV 145
Query: 999 LYYKNKDRGETFNIVPTSAISG-----EGIPDLLLLLVQWTQKT-----MVEKLTFRNEL 1048
L + + + + EG+ +L + + +K + L R
Sbjct: 146 L--------QDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPAR--- 194
Query: 1049 QCTVLEVKVIEGHGTTIDVV---LVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKEL 1105
+ + G G VV + G+ + D+ + L +++
Sbjct: 195 -IFIDHAFNVTGKGC---VVLGVVKQGISKDKDKTKIFPLD----------------RDI 234
Query: 1106 RVKGTYLHHKQIKAAQ 1121
++ H I +A
Sbjct: 235 EIRSIQSHDVDIDSAP 250
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 5e-07
Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 14/225 (6%)
Query: 409 AQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKK 468
LE + + + P+ + + + ++ + E A K +K
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEAD--KQNEGEHARENKLEKA 65
Query: 469 KEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAE 528
+ + A+ A+ E +EA K PE+K S+ V E A A+ K +
Sbjct: 66 EGVATASETASPASNEAATTETAEAASAAK-------PEEKASEVVAETPSAEAKPKSDK 118
Query: 529 ERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEE 588
E + + E + +E + E + + E K EK K+ + + E
Sbjct: 119 ETEAKPEAT--NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP 176
Query: 589 ARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
R + N+ + L + + K A N
Sbjct: 177 GAREDDAINR---GSVVLASRRTGHLVNEKASKEAKVQALSNTNS 218
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
++DTPGH FT R D A++V+D G+EP+TI+ + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145
Query: 952 R 952
R
Sbjct: 146 R 146
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951
++DTPGHE F+ R D ++V+D G+E +T + + + ++R+T + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 952 R 952
R
Sbjct: 146 R 146
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 11/176 (6%)
Query: 379 FKVNKGEVVAQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPA--PQEEKVQVQ 436
++ K E + + + E+ QE + +I + + A Q+ ++
Sbjct: 829 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 888
Query: 437 PPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVET 496
E A + E +A K K + + E ++ + D ++ E
Sbjct: 889 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 948
Query: 497 KKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEEL 552
N + + A++ + + L E E +++E+L
Sbjct: 949 NYN---------GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 16/208 (7%), Positives = 53/208 (25%), Gaps = 37/208 (17%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
QT K++ P + + + + E ++++
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE----HAEALRIE----------- 869
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
++ + ++ KK + K +
Sbjct: 870 LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI------------------- 910
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ +++ ++ + E + + L + E + E K ++
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL---NYNGVPELTERKDTFFAQQ 967
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAM 595
+ + K + E +++E +
Sbjct: 968 WTGVKSSAETYKNTLLAELERLQKIEDL 995
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT-----IESLNLLKMRNTEFIV 945
++ DTPGHE +T + G+ CD+AI++VD +G++ QT I +LL +++ +V
Sbjct: 107 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI--ASLLGIKH--IVV 162
Query: 946 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 1005
A+NK+D L G+ + F I + + +K
Sbjct: 163 AINKMD-LNGFD------------------ERVFE----SIKADYLK--FAEGIAFKPTT 197
Query: 1006 RGETFNIVPTSAISGEGI 1023
VP SA+ G+ +
Sbjct: 198 ----MAFVPMSALKGDNV 211
|
| >1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus} Length = 135 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 1181 GSLEAL---LEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTP 1237
GS+EAL L+ + + V++ + ++G + + D+ A+ A ++ F+V+
Sbjct: 52 GSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATA------SNAIVIGFNVRPDA 105
Query: 1238 EARELAEELGVKIFIADIIYHLFD 1261
A+ AE V I + IIY++ +
Sbjct: 106 NAKRAAESEKVDIRLHRIIYNVIE 129
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 53/186 (28%)
Query: 893 IDTPG-HES-----FTNLRSRGS-GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945
+DTPG + ++R D ILV D + +NL K F+V
Sbjct: 88 VDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV--VNLFKEMEIPFVV 145
Query: 946 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 1005
+NK+D L E+ + Y+++
Sbjct: 146 VVNKID-------------------------------------VLGEKAEELKGLYESRY 168
Query: 1006 RGETFNIVPTSAISGEGIPDLLLLLVQW----TQKTMVEKLTFRNELQCTVLEVKVIEGH 1061
+ ++ SA+ +G D+ + + + + L +L V+ + +
Sbjct: 169 EAK---VLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPK 225
Query: 1062 GTTIDV 1067
G I
Sbjct: 226 GRLIMP 231
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 6e-06
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 471 KEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEER 530
K +K +G+ + + + + KM K EM++ + + + +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 531 KKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKK----QEGKLLTGKQK 586
K ++ E L++ E+ K+ E + + E KRR+ E EK ++ Q+ T ++
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Query: 587 EE 588
++
Sbjct: 412 KK 413
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+ K K + K + + K E + + K K +K+
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEK 570
E+Q + K+ E + +E EE+ R+ E+E+ E +R E + R EK K+K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-04
Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 504 KGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRK 563
+ + E ++RE +++K E E +++ E++ + + K +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 564 KEKE---KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKY 620
E E + + +KK E + + +E+ R+ E + + A+ L + ++ K
Sbjct: 356 SEAELQRRHEQMKKNLEAQHK--ELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK- 412
Query: 621 QTKKKS 626
KK
Sbjct: 413 --KKGK 416
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-05
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 885
CI+ HVD GK+ L D + ++ G I++ + ++ RER +K A +
Sbjct: 10 CIIAHVDHGKSTLADRL----LEY--TGAISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 886 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
L +IDTPGH F+ SR C+ A+L++D G+E QT+ +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 939 RNTEFIVALNKVD 951
++ I +NK+D
Sbjct: 124 QDLVIIPVINKID 136
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 507 EKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEK 566
++ K+ EM++ +R + +E + +E E+ L ++ + K+L + E++ E K++ +
Sbjct: 332 LGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDD 391
Query: 567 EKEKLLKKKQEGKLL 581
E ++K +LL
Sbjct: 392 EVNAFKQRKTAAELL 406
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 21/123 (17%), Positives = 50/123 (40%)
Query: 457 EESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVRE 516
EE K ++ A + K E + + K E ++ + +E
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 517 MQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQ 576
+ E R K+ + +K++ E++ + ++E ++ + AE + + + + LK+ +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 577 EGK 579
E K
Sbjct: 424 EKK 426
|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 2e-05
Identities = 28/246 (11%), Positives = 81/246 (32%), Gaps = 6/246 (2%)
Query: 454 EEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQ 513
+ + + K + +E++ K+A + + + ++ + + +++M +
Sbjct: 295 RKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERS 354
Query: 514 VREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLK 573
+ EA EE+ ++ + + E+ + + ++R E E++K +
Sbjct: 355 QANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEI 414
Query: 574 KKQEGKLLTGKQKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQANG 633
+ ++ ++ +Q+ E + E R Q + + AA A
Sbjct: 415 RAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTD 474
Query: 634 AVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESL------TVEEKPEIADAPKEN 687
S+ + ++ ++ E K ++A + E
Sbjct: 475 PDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDET 534
Query: 688 EVEEED 693
+ D
Sbjct: 535 KETAMD 540
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ-QIGATYFPAENI-RERTRELKANA-TL 885
I+ H+D GK+ L D I +Q GG++ ++ A + ++ RER +KA + TL
Sbjct: 8 SIIAHIDHGKSTLSDRI----IQI--CGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 886 KVPG-------LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM 938
L IDTPGH F+ SR C+ A+LVVD G+E QT+ +
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121
Query: 939 RNTEFIVALNKVD 951
+ E + LNK+D
Sbjct: 122 MDLEVVPVLNKID 134
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 3e-05
Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 13/192 (6%)
Query: 388 AQTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEKVQVQPPEPVAPPDAA 447
A + + + P E Q ++K +P + + +
Sbjct: 402 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 461
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+ +E A + + EKEKE + ++ + +S K + E
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIE-------VERVKAESAQASAKMLHEMQRKNE 514
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEER--KRLEELERQAEEAKRRKKE 565
+ M ++ R QE L + K + +L KE+E +L+E E+ +E +++
Sbjct: 515 QMMEQKERSYQEHLKQ----LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 570
Query: 566 KEKEKLLKKKQE 577
K ++ + +
Sbjct: 571 IMKNEIQDLQTK 582
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 832 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 885
GHVD GKT L + G E GI+ ++G T + + L
Sbjct: 15 GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCL 74
Query: 886 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 938
L +D+PGHE+ + S G+ L D AILV+ +PQT E L L+ +
Sbjct: 75 AETEFLRRVSFVDSPGHETLMATMLS-GASLMDGAILVIAANEPCPQPQTKEHLMALEIL 133
Query: 939 RNTEFIVALNKVD 951
+ I+ NK+D
Sbjct: 134 GIDKIIIVQNKID 146
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 38/338 (11%), Positives = 95/338 (28%), Gaps = 29/338 (8%)
Query: 262 NDDVKEDKDEDDEPITFTDKKKKSNKGGRMRSSAFDLLENEDEDDDEKKDKDEEDEPIIF 321
+ ++ P K + + + A ++ D + + E
Sbjct: 159 RELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVE---- 214
Query: 322 TDKKKKTKSSKKTVSSFSEVLLDEENVVEDAPV----LSDVSGAVDTKQQSGDSSIVESD 377
KK++ + + ++ + P ++ G V+ K+ + +V
Sbjct: 215 YVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRR 274
Query: 378 DFKVNKGEVVA-----QTSKNKKKKKEKEKPRSERTAQEEDDLEKILAELGQGPAPQEEK 432
+ + + + +K + ++ + + E +
Sbjct: 275 EDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLT 334
Query: 433 VQVQPPEPVAPPDAADEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSE 492
+ ++ EP V E A K + E+E A A +
Sbjct: 335 LFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASIL 394
Query: 493 AVETKKNDGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEE------- 545
V+ + + E +V K + R E + +R
Sbjct: 395 VVKARVYPFEDD-VEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDID 453
Query: 546 --------RKRLEELERQAEEAKRRKKEKEKEKLLKKK 575
++ L+EL+ +A E + ++ K + + K
Sbjct: 454 ARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAK 491
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 9/192 (4%)
Query: 516 EMQEALARRKEAEERKKREEEERLRKEEEERKR-LEELERQAEEAKRRKKEKEKEKLLKK 574
E ++ L + E R ++E L + + EE+ + E A + L +
Sbjct: 148 EKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRF 207
Query: 575 KQEGKLLTGKQKEEARRL---EAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQA 631
+ ++ K++ RL + + G L + + + + +
Sbjct: 208 PRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEG 267
Query: 632 NGAVPLKEDSIESKEKEQEKQETLLEVDVGETEKVEEGESLT-VEEKPEIADAPKENEVE 690
V +ED + + V E VE+G+ L + + + +VE
Sbjct: 268 AFLVLRREDEPVATYFLPVG----MTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVE 323
Query: 691 EEDDDDDEEWDA 702
E++ +
Sbjct: 324 AEEEGETVYLTL 335
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 832 GHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIG---ATYFPAENIRERTRELKANATL 885
GHVD GKT L + G E GIT +IG A N +
Sbjct: 17 GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 76
Query: 886 KVPGLLV----IDTPGHESF-TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-M 938
+ ID PGHE+ T + + G+ L D AILV+ PQT E L L+ +
Sbjct: 77 HETEFVRRVSFIDAPGHEALMTTMLA-GASLMDGAILVIAANEPCPRPQTREHLMALQII 135
Query: 939 RNTEFIVALNKVD 951
I+A NK++
Sbjct: 136 GQKNIIIAQNKIE 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1415 | ||||
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 2e-40 | |
| d1g7sa2 | 128 | b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, | 6e-39 | |
| d1g7sa3 | 131 | c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, | 2e-32 | |
| d1g7sa1 | 101 | b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, | 1e-29 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-28 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-20 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-18 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 2e-17 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 3e-17 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 3e-16 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 3e-16 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 2e-12 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 3e-11 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 1e-10 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 4e-10 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 4e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 9e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 6e-05 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 7e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-04 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 2e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 3e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 4e-04 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 4e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 5e-04 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 7e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.001 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.002 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 0.003 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.004 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 147 bits (370), Expect = 2e-40
Identities = 99/222 (44%), Positives = 144/222 (64%), Gaps = 2/222 (0%)
Query: 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN 882
+RSPI ++GHVD GKT LLD IRG+ V EAGGITQ IGAT P + I +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 883 ATLKVP--GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
+++ GL IDTPGHE+FT LR RG L D+AIL+VDI G +PQT E+LN+L+M
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
T F+VA NK+DR++GW+ P ++ +Q+ VQ + + ++ ++V +L E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
+ D +I+P SAI+GEGIP+LL +L+ Q+ + E+L
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL 224
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 139 bits (351), Expect = 6e-39
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 1283 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPV 1342
+ P ++++P VF + P + GV+V+ G+ + G P+ D +G + S+++ + +
Sbjct: 2 IKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMND--DGETVGTVESMQDKGENL 59
Query: 1343 DTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEW 1402
+A +GQK A+ I ++G+ D L I +LK DL+ +E
Sbjct: 60 KSASRGQKVAMAIKD-------AVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEEL 112
Query: 1403 RLLVKLKNLFKIQ 1415
L+ K+ + + +
Sbjct: 113 DLMDKIAEIKRKK 125
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 120 bits (302), Expect = 2e-32
Identities = 47/134 (35%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Query: 1147 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGP 1206
D E V+EE + +++ + +ID GV V+A TLGSLEA+++ L+ V I V+ I G
Sbjct: 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADI--GD 56
Query: 1207 VHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAY 1266
V ++DV+ A + L++ + Y I+AF+VKV P A + + +K+F ++IY L +++ +
Sbjct: 57 VSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEW 116
Query: 1267 INNLKEEKKREAAD 1280
+ ++EEKK++ +
Sbjct: 117 VRGIEEEKKKKWME 130
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 111 bits (279), Expect = 1e-29
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 1049 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-V 1107
+ T+LEVK G G TID V+ +G+L + D I + + I T IR+LL P P++E+R
Sbjct: 6 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRES 65
Query: 1108 KGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1142
+ + ++ AA GIKI A G++ +AG+ L VV
Sbjct: 66 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVV 100
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 113 bits (282), Expect = 2e-28
Identities = 38/250 (15%), Positives = 67/250 (26%), Gaps = 56/250 (22%)
Query: 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP------------------ 868
I +G +GKT L + + G P
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 869 ----------------AENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLC 912
E E ++ K ++IDTPG G L
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 913 D-----IAILVVDIMHGLEPQTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNA 962
+ + + + D +P + + I ALNKVD L + R+
Sbjct: 120 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 1022
+ I ++ + + M ++ + ++ SA + EG
Sbjct: 180 KYFEDIDYLTARLKLD----------PSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 229
Query: 1023 IPDLLLLLVQ 1032
DL L +
Sbjct: 230 FEDLETLAYE 239
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 88.9 bits (220), Expect = 2e-20
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 34/142 (23%)
Query: 829 CIMGHVDTGKTKLLDCI-----------------RGTNVQEGEAGGITQQIGATYFPAEN 871
+GHVD GKT L + E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 872 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 931
+D PGH + G+ D AILVV G PQT E
Sbjct: 67 RH----------------YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 110
Query: 932 SLNLLKMRNTEFIV-ALNKVDR 952
+ L + +IV +NKVD
Sbjct: 111 HILLARQVGVPYIVVFMNKVDM 132
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 85.9 bits (212), Expect = 1e-18
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
I H+D GKT + I + + G + + F + RER + A T
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQE-RERGITITAAVTTCFW 68
Query: 889 G---LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945
+ +ID PGH FT R + D AI+V D G+EPQ+ + I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 946 ALNKVDRLY 954
NK+D+
Sbjct: 129 FANKMDKTG 137
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (204), Expect = 2e-17
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 829 CIMGHVDTGKTKLLDCI--RGTNVQEGEAG--------------GITQQIGATYFPAENI 872
++ HVD GK+ L D + R + +AG GIT + A +E
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 932
E +E+K + +ID+PGH F++ + + D A++VVD + G+ QT
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 933 LNLLKMRNTEFIVALNKVDRLYGW 956
L + +V +NKVDR
Sbjct: 141 LRQALGERIKPVVVINKVDRALLE 164
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.3 bits (197), Expect = 3e-17
Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 34/229 (14%)
Query: 829 CIMGHVDTGKTKLLDCI------------RGTNVQEGEAGGITQQIGATYFPAENIRERT 876
++GHVD GK+ L+ + + + G +++ + RER
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 877 RELKANAT---LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 933
+ K +ID PGH F G+ D AILVV G +
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-- 124
Query: 934 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 993
T + L KT ++ A+ + + R +IV Q+ +
Sbjct: 125 ---VEGQTREHIIL--------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173
Query: 994 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
VP A SG+ I + + T+ E L
Sbjct: 174 ------MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL 216
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 77.2 bits (189), Expect = 3e-16
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 829 CIMGHVDTGKTKLLDCI----------------RGTNVQEGEAGGITQQIGATYFPAENI 872
G+VD GK+ L+ + R + + + AE
Sbjct: 13 LTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAERE 72
Query: 873 RERTRELKANATLKVPGLL-VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 931
+ T ++ + DTPGHE +T + G+ CD+AI++VD +G++ QT
Sbjct: 73 QGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR 132
Query: 932 SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991
+ + + IV L G+ I + + +
Sbjct: 133 HSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK------------- 179
Query: 992 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 1042
T VP SA+ G+ + + + ++++E L
Sbjct: 180 ---------------PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL 215
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 76.2 bits (187), Expect = 3e-16
Identities = 44/226 (19%), Positives = 64/226 (28%), Gaps = 73/226 (32%)
Query: 829 CIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENI 872
+GHVD GKT L I N E A GIT +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 873 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES 932
D PGH + G+ D ILVV G PQT E
Sbjct: 67 H----------------YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH 110
Query: 933 LNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991
L L + + +V +NK D + + + + +++
Sbjct: 111 LLLARQIGVEHVVVYVNKAD------------------------AVQDSEMVELVELEIR 146
Query: 992 EQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLL 1027
E +GE I+ SA+ + + LL
Sbjct: 147 ELLTEFGY------KGEETPIIVGSALCALEQRDPELGLKSVQKLL 186
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.2 bits (161), Expect = 2e-12
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 23/146 (15%)
Query: 830 IMGHVDTGKTKLLDCI---------RGTNVQEGEAGGITQQIGATYFPAENIRE-RTREL 879
++GHVD+GK+ + R E EA + + + + ++ R R +
Sbjct: 11 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGI 70
Query: 880 KANATLKVPG-----LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEP 927
+ L + VID PGH F G+ D AIL++ G +
Sbjct: 71 TIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG 130
Query: 928 QTIESLNLLKMRNT-EFIVALNKVDR 952
QT E L + IVA+NK+D
Sbjct: 131 QTREHALLAFTLGVRQLIVAVNKMDS 156
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 50/222 (22%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEG----------EAGGITQQIGATYFPAENIRERT-- 876
++GHVD GKT L+ I G + + G IG + T
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 877 ---RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIES- 932
+ + + ID PGHE G+ L D AILVV
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 933 -LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 991
+ L + I+ NKVD + + +Q
Sbjct: 132 FVALGIIGVKNLIIVQNKVDV-------VSKEEALSQYRQIKQFTKGTW----------- 173
Query: 992 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033
E I+P SA+ I L+ + ++
Sbjct: 174 ---------------AENVPIIPVSALHKINIDSLIEGIEEY 200
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 60.0 bits (144), Expect = 1e-10
Identities = 45/227 (19%), Positives = 69/227 (30%), Gaps = 46/227 (20%)
Query: 817 KQAEENLRSPICCIMGHVDTGKTKLLDCIRGT---NVQEGEAGGITQQIGATYFPAENIR 873
+QAE N+ ++GHVD GKT L + G E GIT +IG
Sbjct: 2 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP 56
Query: 874 ERTRELKANATLKV-------PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE 926
R + + ID PGHE+ G+ L D AILV+
Sbjct: 57 NCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP 116
Query: 927 PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986
+ + I+ A + + + QI
Sbjct: 117 RPQTREHLMA-------------------LQIIGQKNIIIAQNKIELVDKEKALENYRQI 157
Query: 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033
++ E I+P SA+ G I L+ + +
Sbjct: 158 KEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDF 192
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 59.9 bits (144), Expect = 4e-10
Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 32/214 (14%)
Query: 829 CIMGHVDTGKTKLLDCI---------RGTNVQEGEA---GGITQQIGATYFPAENIRERT 876
+GHVD GK+ L I R E EA G + + RE+
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 877 RELKANATLK---VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL 933
+ ++ ++D PGH+ + G+ DI +LV+ G E
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 934 NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 993
+ R + ++ L + P V+ +++ + ++ +M L ++
Sbjct: 148 G--QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA------ 199
Query: 994 GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 1027
+ +P SA +G+ + D +
Sbjct: 200 ---------GYNSKTDVKYMPVSAYTGQNVKDRV 224
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 59.9 bits (144), Expect = 4e-10
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT-YFPAENIRERTRELKANATLKV 887
++GH +GKT L + + + G + + T Y P + T L
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 888 PGLLVI-DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 946
+ + D PG+ F D A++ V G++ T + + + +V
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 947 LNKVDRLYGWKTCRN 961
+ K+D+ +
Sbjct: 126 VTKLDKGGDYYALLE 140
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 38/200 (19%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
I+G + GK+ L + I G T+ + + +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
V + D+ ++V+D G+ Q L++ R +V
Sbjct: 72 ----VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
NK D + + + T+L+ +
Sbjct: 128 NKWDLVVHREKRYD---------------------------------EFTKLFREKLYFI 154
Query: 1008 ETFNIVPTSAISGEGIPDLL 1027
+ ++ TSA G I ++
Sbjct: 155 DYSPLIFTSADKGWNIDRMI 174
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 40/210 (19%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
G + GK+ L+ + G V+ G+ G+T++I + I + K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 889 GLLVIDTPGHESFTNLRSR------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE 942
+ D H N ++ G I+ G P +E L+ +
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 943 FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK 1002
IVA+NK+D++ + N ++
Sbjct: 124 TIVAVNKLDKIKNVQEVINF----------------------------------LAEKFE 149
Query: 1003 NKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032
+P SA G+ I L + +
Sbjct: 150 VPLSEIDKVFIPISAKFGDNIERLKNRIFE 179
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 23/146 (15%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
++ KKK ++ ++ + ++ ++A+ K E ++ +
Sbjct: 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 210
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLL 572
E +A A+ +RK + E+ + +E + E+ + + KE+E+ L
Sbjct: 211 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT-EKMENDRVQLLKEQERTLAL 269
Query: 573 KKKQEGKLLTGKQKEEARRLEAMRNQ 598
K +++ +LL ++E+R ++
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 6e-04
Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 453 EEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSK 512
+E A + + EKEKE + A + K +KN+ + E+ +
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 243
Query: 513 QVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKL 571
++++ E + + +++ +E+E + L+E ++ + + + + K+
Sbjct: 244 HLKQLTEKMENDRVQLLKEQERTLALKLQEQE--QLLKEGFQKESRIMKNEIQDLQTKM 300
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 6e-04
Identities = 22/151 (14%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
Query: 448 DEKVGEEEKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPE 507
+E+V + + +K + K+K ++ +++K++ +
Sbjct: 136 EEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQT 195
Query: 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
+ + + E + E+ + + E RK E+ ++ E ++ + K E +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 568 KEKLLKKKQEGKLLTGKQKEEARRLEAMRNQ 598
+ +LLK+++ L K +E+ + L+ +
Sbjct: 256 RVQLLKEQER--TLALKLQEQEQLLKEGFQK 284
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 35/250 (14%)
Query: 788 EQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENL-RSPI-CCIMGHVDTGKTKLLDCI 845
+ + SQ+ + + ++ A + + S + + G +GK+ ++ +
Sbjct: 17 GRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL 76
Query: 846 RGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---T 902
RG +E A + E T E +P ++ D PG S
Sbjct: 77 RGIGNEEEGA------------AKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP 124
Query: 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962
+ + ++ + I+ + M EF KVD
Sbjct: 125 DTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI-------- 176
Query: 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 1022
+ Q D + + V +E G+ + ++ +
Sbjct: 177 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF----------LLSNKNVCHYD 226
Query: 1023 IPDLLLLLVQ 1032
P L+ L+
Sbjct: 227 FPVLMDKLIS 236
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (95), Expect = 2e-04
Identities = 16/101 (15%), Positives = 43/101 (42%)
Query: 467 KKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQVREMQEALARRKE 526
++++ E+ AAE++++ + + + + E +++
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 527 AEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKE 567
++ + +E R +RL+E ++ AEE ++ K+ KE
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEA 559
DG + ++ ++E + + AEER+K +E E L+ E+R+ E+ ++A E
Sbjct: 27 DGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE 86
Query: 560 KRRKKEKEKEKLLKKKQEGKLLTGKQKEEARR 591
+ KEKL +K + K
Sbjct: 87 NNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118
|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Non-globular all-alpha subunits of globular proteins superfamily: Stathmin family: Stathmin domain: Stathmin 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.6 bits (87), Expect = 0.002
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 455 EKEESAASKKKKKKKEKEKEKKAAAAAAAEDKQQGKSEAVETKKNDGKSKGPEKKMSKQV 514
E AS +++ E+ +K AA K Q K ++++
Sbjct: 28 GVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELL--------------KHLAEKR 73
Query: 515 REMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKK 574
+E + + E + +E+L ++ E K E A + ++K+K E++ K
Sbjct: 74 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
Query: 575 KQE 577
K+
Sbjct: 134 KEL 136
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 48/205 (23%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
++G+ TGK+ LL I ++ + ++ + K
Sbjct: 8 FLVIGNAGTGKSCLLHQF------------IEKKFKDDSNHTIGVEFGSKIINVGG--KY 53
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
L + DT G E F ++ A+LV DI E AL
Sbjct: 54 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS-----------------RETYNAL 96
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
+N I+ L L T L +
Sbjct: 97 TNWLTDARMLASQNIVII-----------------LCGNKKDLDADREVTFLEASRFAQE 139
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQ 1032
+ TSA++GE + + + +
Sbjct: 140 NELMFLETSALTGENVEEAFVQCAR 164
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 41/205 (20%)
Query: 829 CIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888
I GH+D GKT L + I P R T
Sbjct: 9 GIFGHIDHGKTTLSKVLT----------EIASTSAHDKLPESQKRGITI----------- 47
Query: 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALN 948
F+ + + + + + ++L +
Sbjct: 48 ---------DIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 98
Query: 949 KVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGE 1008
+ N PI+ I + + + E R I+ + + N +
Sbjct: 99 QTGEHMLILDHFNIPIIVVITKSD-NAGTEEIKRTEMIMKSILQSTHN----------LK 147
Query: 1009 TFNIVPTSAISGEGIPDLLLLLVQW 1033
+I+P SA +G G+ +L L++
Sbjct: 148 NSSIIPISAKTGFGVDELKNLIITT 172
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 21/224 (9%), Positives = 50/224 (22%), Gaps = 43/224 (19%)
Query: 810 PEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA 869
P++ P G + GK+ L+ + + + F
Sbjct: 6 PDIRHLPS-----DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 870 ENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQT 929
+ + + + R ++++DI H L+
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS----LQGLVVLMDIRHPLKDLD 116
Query: 930 IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQ 989
+ + + KA K + + + N
Sbjct: 117 QQMIEWAVD-----------------SNIAVLVLLTKADKLASGARKAQLN--------- 150
Query: 990 LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033
+ + S++ +G+ L L W
Sbjct: 151 --------MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 186
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 6e-04
Identities = 25/205 (12%), Positives = 45/205 (21%), Gaps = 48/205 (23%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
I+G GK+ LL A I + + +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK------------ 57
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
L + DT G E F L ILV D+
Sbjct: 58 --LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT------------------------- 90
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
+ + + + + V + + +
Sbjct: 91 RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML----- 145
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQ 1032
+ SA + +G+ LV+
Sbjct: 146 ----FIEASAKTCDGVQCAFEELVE 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (92), Expect = 7e-04
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 48/205 (23%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
++G GKT +L I + R +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK------------ 56
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
L + DT G E F + + +LV DI + +S + ++
Sbjct: 57 --LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE------KSFDNIRNWIRNIE--- 105
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
+ + + + + + + + KE+G L Y K
Sbjct: 106 --------EHASADVEKMILGNKCDVNDKRQVS----------KERGEKLALDYGIK--- 144
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQ 1032
+ TSA + + + L +
Sbjct: 145 ----FMETSAKANINVENAFFTLAR 165
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.3 bits (90), Expect = 0.001
Identities = 26/213 (12%), Positives = 45/213 (21%), Gaps = 45/213 (21%)
Query: 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK 880
E S I+G + GK+ LL+ + G V T + E R+
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60
Query: 881 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN 940
E + + VVD+ H +
Sbjct: 61 PGLH-------KPMDALGEFMDQEVYEALADVNAVVWVVDLRHP-----------PTPED 102
Query: 941 TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 1000
AL + N ++ +E
Sbjct: 103 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPE------------------ 144
Query: 1001 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033
SA+ + +L L+
Sbjct: 145 ---------AEPRMLSALDERQVAELKADLLAL 168
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (88), Expect = 0.002
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 49/211 (23%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
++G GK+ LL I +I + +L+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQ------- 54
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
+ DT G E F + + ILV DI
Sbjct: 55 ----IWDTAGQERFRTITTAYYRGAMGIILVYDITD------------------------ 86
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
+T N I + K N +E + LV + ++ + + + + +
Sbjct: 87 --------ERTFTN--IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-QGEALAKE 135
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038
+ +SA + + + ++ L + Q+ +
Sbjct: 136 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 0.003
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 48/205 (23%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
I+G+ GKT L + F + I + +K
Sbjct: 8 ILIIGNSSVGKTSFLFRYA-----DDSFTPAFVSTVGIDFKVKTIYRNDKRIK------- 55
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVAL 947
L + DT G E + + + IL+ DI + F
Sbjct: 56 --LQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------------EESFNAVQ 97
Query: 948 NKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRG 1007
+ ++ + ++ K D + + R Q+ L
Sbjct: 98 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------------- 141
Query: 1008 ETFNIVPTSAISGEGIPDLLLLLVQ 1032
F SA + LV
Sbjct: 142 --FEFFEASAKDNINVKQTFERLVD 164
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (87), Expect = 0.004
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 887
++G+ GK+ LL Y + + + ++ + K
Sbjct: 9 LLLIGNSGVGKSCLLLRF------------SDDTYTNDYISTIGVDFKIKTVELDG--KT 54
Query: 888 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN------------- 934
L + DT G E F + S I+V D+ ++
Sbjct: 55 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 114
Query: 935 -LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 993
L+ + + + D + P ++ +T+V++ F + + + + Q
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL-TMARQIKESMSQ 173
Query: 994 GMNTELYYKNKDRG 1007
E K +D+G
Sbjct: 174 QNLNETTQKKEDKG 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1415 | |||
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 100.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.95 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.94 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.94 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.92 | |
| d1g7sa3 | 131 | Initiation factor IF2/eIF5b, domain 3 {Archaeon Me | 99.92 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.91 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.78 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.75 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.7 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.67 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.64 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.63 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.63 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.6 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.58 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.58 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.58 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.57 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.56 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.55 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.53 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.53 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.53 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.53 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.52 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.52 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.51 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.51 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.49 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.49 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.49 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.48 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.47 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.45 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.42 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 99.37 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.36 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.36 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.25 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.18 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.11 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.1 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.98 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.95 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.91 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.84 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.74 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.21 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.99 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 97.96 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 97.95 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.88 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.82 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.81 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 97.78 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.78 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.76 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 97.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.74 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 97.74 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.66 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.32 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.23 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 97.12 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 97.08 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 97.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.91 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.89 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 96.78 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 96.67 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 96.46 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 96.22 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.13 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 96.08 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 95.8 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 95.8 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 95.67 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 95.65 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 95.64 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 95.39 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.16 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 94.99 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 94.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.68 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 94.35 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.24 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 94.15 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 94.01 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 93.93 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 93.67 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 93.28 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 93.11 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.62 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 92.22 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 91.98 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 89.87 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 89.85 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.89 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 87.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.77 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 86.26 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 85.81 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 85.64 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 85.28 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 84.74 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 84.49 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 84.36 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 84.0 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 83.84 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 83.82 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 83.78 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.67 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 83.41 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 83.33 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 83.11 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 83.04 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 82.68 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 82.58 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.54 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 82.47 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 82.47 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 82.15 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 82.1 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 81.86 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 81.68 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 81.05 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 80.88 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 80.59 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 80.56 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 80.5 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.38 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 80.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 80.11 |
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=1.5e-34 Score=273.48 Aligned_cols=222 Identities=45% Similarity=0.786 Sum_probs=198.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCC--CCCCCCCCEEEEECCCCC
Q ss_conf 358980668717999878999999839533555576037520367213331000000013--445677979999399985
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~--~~~~~~~~l~iIDTPGHe 899 (1415)
.+|||+|||+||+|||||||+++|+++++...+.+++|.+++...++.+.....+..... ...+...+++|||||||.
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 98998799996998549999999982366001457454531531232101223444332100110111342234641100
Q ss_pred CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 11457750157666307987125799765799999997219955999982366458755888028999986449999999
Q 000570 900 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 900 ~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
+|...+.+++..||++|||||+.+|+++||.++|.++...++|+|||+||||++..|.......+...+..+...++..+
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred CCCCCCHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 00011100012464589998612376320257777764379759999989307881455446788875420308889899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999998078312320135889621499478877899004899999999999998531
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1043 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~l~ 1043 (1415)
...+......+...++....++...+|...++++|+||++|.||++|+..|..+++.+|.+.|.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~l~ 225 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK 225 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998665666512310015777499934898989999999999999999998646
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.95 E-value=5.3e-27 Score=216.50 Aligned_cols=161 Identities=29% Similarity=0.348 Sum_probs=124.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCC----------------CCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCE
Q ss_conf 0668717999878999999839----------------533555576037520367213331000000013445677979
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 890 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t----------------~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l 890 (1415)
+|+|+||+|||||||+++|++. .....+.+|||++.+.+++.+.. ..+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~----------------~~~ 68 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA----------------RHY 68 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS----------------CEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECE----------------EEE
T ss_conf 8999958898099999999999987376125565410465655078841772369998121----------------568
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 999399985114577501576663079871257997657999999972199-5599998236645875588802899998
Q 000570 891 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 891 ~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~v-P~IVviNKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
+|+|||||.+|...+.++++.+|++|||||+..|+++||.+++.++..+++ |+|||+||||++.+ .
T Consensus 69 ~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~------~------- 135 (196)
T d1d2ea3 69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD------S------- 135 (196)
T ss_dssp EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC------H-------
T ss_pred EEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------H-------
T ss_conf 752373167789999998754376799998688876348999999998558848999855656660------8-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC----------CCHHHHHHHHHHH
Q ss_conf 644999999989899999999980783123201358896214994788778----------9900489999999
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----------EGIPDLLLLLVQW 1033 (1415)
Q Consensus 970 ~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG----------eGI~eLl~~l~~l 1033 (1415)
..|......+...|...+++. ..+|++|+||++| .|++.||+.+..+
T Consensus 136 -------~~~~~i~~~i~~~l~~~~~~~----------~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 136 -------EMVELVELEIRELLTEFGYKG----------EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp -------HHHHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHCCCC----------CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf -------789999999999999719995----------558799989452646568444637889999999851
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.94 E-value=2.6e-26 Score=211.23 Aligned_cols=175 Identities=25% Similarity=0.387 Sum_probs=118.0
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC--CCC---------CCCCCEEEEECEEEECCC---CCCEEEEECC---CCC
Q ss_conf 13589806687179998789999998395--335---------555760375203672133---3100000001---344
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE---------GEAGGITQQIGATYFPAE---NIRERTRELK---ANA 883 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~--v~~---------geagGITq~iga~~~p~e---~i~~~t~~i~---~~~ 883 (1415)
+.+| |+|+||||||||||+++|++.. +.. ....|.+.....+.+... ..+.+...+. ...
T Consensus 8 ~~~~---i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 8 EMLR---FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp EEEE---EEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred CCCE---EEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEE
T ss_conf 7555---9999378989899999999986983567889999889862865441221001464134431587731557898
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCH
Q ss_conf 56779799993999851145775015766630798712579976579999999721995-59999823664587558880
Q 000570 884 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiD~~~~w~~~~~a 962 (1415)
.+..+.++|||||||.+|...+.+|++.+|+||||||+.+|+++||.+++.++..+++| +||++||||++ +|.
T Consensus 85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~-~~~----- 158 (222)
T d1zunb3 85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN-GFD----- 158 (222)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT-TSC-----
T ss_pred ECCCEEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC-CCC-----
T ss_conf 41523799981663255433321466557668987204567663338999999983998799998700145-552-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 28999986449999999898999999999807831232013588962149947887789900489
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 1027 (1415)
Q Consensus 963 ~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl 1027 (1415)
...|......+...+...+++ ...+++||+||++|+||.+..
T Consensus 159 -------------~~~~~~~~~~l~~~~~~~~~~----------~~~i~~IPiSA~~G~ni~~~s 200 (222)
T d1zunb3 159 -------------ERVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVNKS 200 (222)
T ss_dssp -------------HHHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSSCC
T ss_pred -------------CEEHHHHHHHHHHHHHHHCCC----------CCCEEEEEEECCCCCCCCCCC
T ss_conf -------------000035677776556752048----------996089997754674687575
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.4e-26 Score=211.52 Aligned_cols=157 Identities=28% Similarity=0.402 Sum_probs=123.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCC--CC-----------------------------CCCCCCCEEEEECEEEECCCCCCE
Q ss_conf 80668717999878999999839--53-----------------------------355557603752036721333100
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGT--NV-----------------------------QEGEAGGITQQIGATYFPAENIRE 874 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t--~v-----------------------------~~geagGITq~iga~~~p~e~i~~ 874 (1415)
.+|+|+||||||||||+++|++. .+ ...+.+|||++++..++.+..
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--- 83 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 83 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS---
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEECCCC---
T ss_conf 47999947899899999999998189668899999999998368764200003530243224001244204762499---
Q ss_pred EEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 00000134456779799993999851145775015766630798712579-------976579999999721995-5999
Q 000570 875 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNTE-FIVA 946 (1415)
Q Consensus 875 ~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~G-------v~~QT~E~l~ll~~~~vP-~IVv 946 (1415)
+.++|||||||.+|+..+.+|++.+|+||||||+..| +++||.++|.++..+++| +||+
T Consensus 84 -------------~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~ 150 (239)
T d1f60a3 84 -------------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 150 (239)
T ss_dssp -------------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred -------------EEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------------8999998989688899999999975889999989988541455731769999999998499808999
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 98236645875588802899998644999999989899999999980783123201358896214994788778990048
Q 000570 947 LNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 947 iNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eL 1026 (1415)
+||||++ +|. ...|......+...+...+++. ..++++|+||.+|.|+.+.
T Consensus 151 iNKmD~~-~~d------------------~~~~~~~~~el~~~l~~~~~~~----------~~i~~ipiSa~~G~ni~~~ 201 (239)
T d1f60a3 151 VNKMDSV-KWD------------------ESRFQEIVKETSNFIKKVGYNP----------KTVPFVPISGWNGDNMIEA 201 (239)
T ss_dssp EECGGGG-TTC------------------HHHHHHHHHHHHHHHHHHTCCG----------GGCCEEECCTTTCBTTTBC
T ss_pred EECCCCC-CCC------------------HHHHHHHHHHHHHHHHHCCCCC----------CCEEEEEEECCCCCCCEEC
T ss_conf 9888788-888------------------8999999998999997418998----------8179999885477765521
Q ss_pred H
Q ss_conf 9
Q 000570 1027 L 1027 (1415)
Q Consensus 1027 l 1027 (1415)
.
T Consensus 202 s 202 (239)
T d1f60a3 202 T 202 (239)
T ss_dssp C
T ss_pred C
T ss_conf 4
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.1e-27 Score=215.54 Aligned_cols=143 Identities=26% Similarity=0.281 Sum_probs=108.0
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEE-CEEEECCCCCCEEEEECC-CCCCCCCCCEEEEECC
Q ss_conf 10135898066871799987899999983953355557603752-036721333100000001-3445677979999399
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-GATYFPAENIRERTRELK-ANATLKVPGLLVIDTP 896 (1415)
Q Consensus 819 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~i-ga~~~p~e~i~~~t~~i~-~~~~~~~~~l~iIDTP 896 (1415)
...++|| |+|+||+|+|||||+++|+.......+.|.+.... ...+.+.+..+..|.... ..+.|+...++|||||
T Consensus 2 ~~~~iRn--i~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtP 79 (276)
T d2bv3a2 2 DLKRLRN--IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAP 79 (276)
T ss_dssp CGGGEEE--EEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCC
T ss_pred CHHHCEE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCC
T ss_conf 7302029--99995898998999999999648534023365184698565888751886001123431598389995278
Q ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98511457750157666307987125799765799999997219955999982366458755888028999986
Q 000570 897 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 897 GHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
||.+|...+.++++.+|.||||||+.+|+++||..+|+++..+++|.|++|||||+. +++|...+..
T Consensus 80 G~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~-------~ad~~~~l~e 146 (276)
T d2bv3a2 80 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT-------GADLWLVIRT 146 (276)
T ss_dssp SSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTST-------TCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCCCHHHHH
T ss_conf 602269999999996300577322567744669999999998599979998644565-------4312126899
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.7e-25 Score=203.58 Aligned_cols=149 Identities=26% Similarity=0.344 Sum_probs=113.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCC-----------------CCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCC
Q ss_conf 8066871799987899999983953-----------------35555760375203672133310000000134456779
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 888 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v-----------------~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~ 888 (1415)
.+|+|+||+|||||||+++|++... .....+|||++++...+.+. ..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~----------------~~ 67 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA----------------KR 67 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------------SC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEEC----------------CE
T ss_conf 19999947898499999999998523047741135431134557755875798437999708----------------81
Q ss_pred CEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 799993999851145775015766630798712579976579999999721995-5999982366458755888028999
Q 000570 889 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 967 (1415)
Q Consensus 889 ~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiD~~~~w~~~~~a~~~~~ 967 (1415)
.++|||||||.+|...+.++++.+|+||||||+.+|+++||.++|.++..+++| +||++||||++..
T Consensus 68 ~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~------------ 135 (204)
T d2c78a3 68 HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD------------ 135 (204)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC------------
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------------
T ss_conf 89998289826549999999987899999998999984789999999998599938999985366798------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 98644999999989899999999980783123201358896214994788778
Q 000570 968 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 1020 (1415)
Q Consensus 968 l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG 1020 (1415)
...|......+...|...++. ...++++|+||+.|
T Consensus 136 --------~~~~~~~~~~i~~~l~~~~~~----------~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 136 --------PELLDLVEMEVRDLLNQYEFP----------GDEVPVIRGSALLA 170 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSC----------TTTSCEEECCHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECHHH
T ss_conf --------899999999999998744999----------65423400232244
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=4e-25 Score=202.29 Aligned_cols=176 Identities=28% Similarity=0.313 Sum_probs=117.2
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCC---CCCCCEEEEECEEEECC-------CCCCEEEEECCC-----CCCCCCCCEE
Q ss_conf 06687179998789999998395335---55576037520367213-------331000000013-----4456779799
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE---GEAGGITQQIGATYFPA-------ENIRERTRELKA-----NATLKVPGLL 891 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~---geagGITq~iga~~~p~-------e~i~~~t~~i~~-----~~~~~~~~l~ 891 (1415)
+|+|+||||||||||+++|++..... ...++++...+...... ......+..... ........++
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 89 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 89 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 89999724886999999997041212288987602210361343356566543320254113423443310256437889
Q ss_pred EEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 9939998511457750157666307987125799-7657999999972199-5599998236645875588802899998
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~v-P~IVviNKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
|||||||.+|...+.+++..||++|||||+.+|+ +.||.+++.++..+++ |+||++||||++. ..
T Consensus 90 iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~-------~~------ 156 (205)
T d2qn6a3 90 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS-------KE------ 156 (205)
T ss_dssp EEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSC-------HH------
T ss_pred EECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC-------CH------
T ss_conf 84261388887640142502664420000014013326789999999819832654145678765-------14------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 644999999989899999999980783123201358896214994788778990048999999999
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 970 ~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
.+......+...+... +...+|++|+||++|.||++|+..|.++.+
T Consensus 157 --------~~~~~~~~~~~~l~~~------------~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 157 --------EALSQYRQIKQFTKGT------------WAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp --------HHHHHHHHHHHHHTTS------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred --------HHHHHHHHHHHHHCCC------------CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf --------7899999999985311------------689886999767888784999998885289
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.93 E-value=1.9e-25 Score=204.82 Aligned_cols=129 Identities=19% Similarity=0.300 Sum_probs=94.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEC-EEEECCCCCCEEEEECC-CCCCCCCCCEEEEECCCCCC
Q ss_conf 58980668717999878999999839533555576037520-36721333100000001-34456779799993999851
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-ATYFPAENIRERTRELK-ANATLKVPGLLVIDTPGHES 900 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~ig-a~~~p~e~i~~~t~~i~-~~~~~~~~~l~iIDTPGHe~ 900 (1415)
+|| |+|+||+|||||||+++|++..-.....|.+..... ..+.+.+..+..|.... ....|+...++|||||||.+
T Consensus 2 iRN--v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d 79 (267)
T d2dy1a2 2 IRT--VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 79 (267)
T ss_dssp EEE--EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred EEE--EEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHH
T ss_conf 509--999948898099999999997097553066222211356269888738768751022223432106880681554
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 14577501576663079871257997657999999972199559999823664
Q 000570 901 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 901 F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~ 953 (1415)
|...+.++++.+|.||||||+.+|+++||..+|.++..+++|++|++||||+.
T Consensus 80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 33556543124673389842357742115788776554044310133320222
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.93 E-value=1e-25 Score=206.81 Aligned_cols=175 Identities=29% Similarity=0.328 Sum_probs=126.9
Q ss_pred CEEEEECCCCCHHHHHHHHHCCC---CCCCCCCCEEEEECEEEECCCCCCEEEEECC-C------CCCCCCCCEEEEECC
Q ss_conf 06687179998789999998395---3355557603752036721333100000001-3------445677979999399
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELK-A------NATLKVPGLLVIDTP 896 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~---v~~geagGITq~iga~~~p~e~i~~~t~~i~-~------~~~~~~~~l~iIDTP 896 (1415)
.|+|+||||||||||+++|++.. ...+..+|+|+.+++.++.+........... . ........++|||||
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtP 86 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 86 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEECCC
T ss_conf 99999345884999999997034466689997176533342122231353021034225665541020575047652431
Q ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98511457750157666307987125799-76579999999721995-59999823664587558880289999864499
Q 000570 897 GHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 897 GHe~F~~lr~rg~s~aDiaILVVDa~~Gv-~~QT~E~l~ll~~~~vP-~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
||.+|...+.++++.+|++|||||+.+|+ .+||.+++.++..+++| +||++||||+.. ..
T Consensus 87 Gh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d-------~~----------- 148 (195)
T d1kk1a3 87 GHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD-------KE----------- 148 (195)
T ss_dssp SHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-------HH-----------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-------HH-----------
T ss_conf 035566776533222233100001135666531679999999823755234541233024-------68-----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999998989999999998078312320135889621499478877899004899999999
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 975 i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
.+...+..+...+...+ ...+++||+||++|+||+.|+..+..++
T Consensus 149 ---~~~~~~~~~~~~~~~~~------------~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 149 ---KALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp ---HHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHCCCC------------CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ---88879999999963004------------7988699987788979899999989778
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.92 E-value=2.3e-25 Score=204.14 Aligned_cols=176 Identities=24% Similarity=0.359 Sum_probs=113.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCC--CCC----------CCCCCEEEEECEEEECCCCCCEEEEECC---CCCCCCCCCEE
Q ss_conf 06687179998789999998395--335----------5557603752036721333100000001---34456779799
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTN--VQE----------GEAGGITQQIGATYFPAENIRERTRELK---ANATLKVPGLL 891 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~--v~~----------geagGITq~iga~~~p~e~i~~~t~~i~---~~~~~~~~~l~ 891 (1415)
+|+|+||||||||||+++|++.. +.. ...+.....+..........+.+...+. ....+..+.++
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~ 105 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFS 105 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99999527989999999999984994588999999887742775421134430233112468655444221211331035
Q ss_pred EEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEEECCCCC-CCCCCCCH
Q ss_conf 9939998511457750157666307987125799-------76579999999721995-599998236645-87558880
Q 000570 892 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVALNKVDRLY-GWKTCRNA 962 (1415)
Q Consensus 892 iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~vP-~IVviNKiD~~~-~w~~~~~a 962 (1415)
|+|||||.+|..++.+|++.+|+||||||+++|+ .+||.+++.++..+++| +||++||||++. +|..
T Consensus 106 ~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e---- 181 (245)
T d1r5ba3 106 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE---- 181 (245)
T ss_dssp ECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH----
T ss_pred EECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH----
T ss_conf 5425555442366652144303004678747776677653320229999999985999599999768877531217----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 2899998644999999989899999999980-783123201358896214994788778990048999
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 1029 (1415)
Q Consensus 963 ~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~-gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~ 1029 (1415)
..|...+..+...+... +++. ...+++||+||++|+||.+++..
T Consensus 182 --------------~~~~ei~~~l~~~l~~i~~~~~---------~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 182 --------------ERYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTSSCCCT
T ss_pred --------------HHHHHHHHHHHHHHHHHHCCCC---------CCCCEEEEEECCCCCCCCCCHHC
T ss_conf --------------8899999999999999837576---------56887999466678795121004
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=7.7e-25 Score=200.16 Aligned_cols=157 Identities=29% Similarity=0.380 Sum_probs=113.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCEEEEECEEEECCCCCCEE
Q ss_conf 066871799987899999983953-------------------------------3555576037520367213331000
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENIRER 875 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~p~e~i~~~ 875 (1415)
+|||+||||||||||+++|++... .....+|+|.......
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~--------- 75 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR--------- 75 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE---------
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEE---------
T ss_conf 89999447999999999999985983288999999988751766555420145733441477652421799---------
Q ss_pred EEECCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCC-------CHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 00001344567797999939998511457750157666307987125799-------7657999999972199-559999
Q 000570 876 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNT-EFIVAL 947 (1415)
Q Consensus 876 t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-------~~QT~E~l~ll~~~~v-P~IVvi 947 (1415)
..++...++|||||||.+|+..+.+|++.||+||||||+.+|+ ++||.+++.++..+++ ++||++
T Consensus 76 -------~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~i 148 (224)
T d1jnya3 76 -------FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 148 (224)
T ss_dssp -------EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred -------EECCCCEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------9518812687518984878999999997506579987415575454224442249999999980998348999
Q ss_pred EECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 8236645-875588802899998644999999989899999999980783123201358896214994788778990048
Q 000570 948 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 1026 (1415)
Q Consensus 948 NKiD~~~-~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eL 1026 (1415)
||||++. .|. ...|......+...+...++. ...+++||+||.+|.||...
T Consensus 149 NK~D~~~~~~~------------------~~~~~~v~~~i~~~~~~~~~~----------~~~i~~IPISA~~G~NV~~~ 200 (224)
T d1jnya3 149 NKMDLTEPPYD------------------EKRYKEIVDQVSKFMRSYGFN----------TNKVRFVPVVAPSGDNITHK 200 (224)
T ss_dssp ECGGGSSSTTC------------------HHHHHHHHHHHHHHHHHTTCC----------CTTCEEEECBTTTTBTTTBC
T ss_pred ECCCCCCCCCC------------------HHHHHHHHHHHHHHHHHCCCC----------CCCCEEEEEECCCCCCCCCC
T ss_conf 80357775311------------------788887799987678761898----------56670999774578881356
Q ss_pred H
Q ss_conf 9
Q 000570 1027 L 1027 (1415)
Q Consensus 1027 l 1027 (1415)
.
T Consensus 201 s 201 (224)
T d1jnya3 201 S 201 (224)
T ss_dssp C
T ss_pred C
T ss_conf 4
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.92 E-value=4.8e-25 Score=201.72 Aligned_cols=129 Identities=35% Similarity=0.692 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 18999999999999987532014884499518856699999973249812335885507552403878875310025784
Q 000570 1147 DLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYA 1226 (1415)
Q Consensus 1147 ~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAi~~~L~~~~~~i~v~~~~iG~vt~~DV~~A~~~~~~~~~~a 1226 (1415)
|.+.++++++.++..+ .+++...||+|||||+||||||+++|.. ++|||++++||+||++||++|+++..+++.||
T Consensus 1 d~e~~~~~~~~e~~~~--~i~~~~~~viiKaDt~GSlEAi~~~L~~--~~i~i~~~~VG~it~~DV~~A~~~~~~~~~~a 76 (131)
T d1g7sa3 1 DPEKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAGIALQEDRVYG 76 (131)
T ss_dssp SHHHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHHHHHTTCTTSC
T ss_pred CHHHHHHHHHHHHHHC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--CCCEEEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 9789999999998734--4554443789981884639999999973--57516886574664516889987421476671
Q ss_pred EEEEECCCCCHHHHHHHHHCCCEEEECCHHHCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99993589997799999980982987251330299999998232577777640
Q 000570 1227 TILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA 1279 (1415)
Q Consensus 1227 ~ILaFnVkv~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~~~~~~~~~~~e~~ 1279 (1415)
+||||||++++.+..+|++.||+|++|+|||||+|+|+.||.+++++.+.+..
T Consensus 77 ~IlgFnV~~~~~a~~~a~~~~V~i~~~~IIY~Lid~~~~~~~~~~~~~~~e~~ 129 (131)
T d1g7sa3 77 AIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWM 129 (131)
T ss_dssp EEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89998514692168999862983898080633899999999756571777862
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=7.5e-25 Score=200.25 Aligned_cols=189 Identities=22% Similarity=0.263 Sum_probs=123.8
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCC----------------CCCCCCCEEEEECEEEECCCCCCEEEEECCCC
Q ss_conf 10135898066871799987899999983953----------------35555760375203672133310000000134
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKAN 882 (1415)
Q Consensus 819 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~geagGITq~iga~~~p~e~i~~~t~~i~~~ 882 (1415)
.+.++|| |||+||+|||||||+++|+.... .....+|||.......+.+.............
T Consensus 13 ~~~~IRN--I~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~ 90 (341)
T d1n0ua2 13 KVTNVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 90 (341)
T ss_dssp CGGGEEE--EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHCC
T ss_conf 7316748--99996888869999999999779866355632322446456775683696787899942676554201002
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 45677979999399985114577501576663079871257997657999999972199559999823664587558880
Q 000570 883 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 962 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a 962 (1415)
..++...++|||||||.+|...+.++++.||+||||||+.+|+++||..+|+++...++|+|++|||||++..
T Consensus 91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~------- 163 (341)
T d1n0ua2 91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL------- 163 (341)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHH-------
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-------
T ss_conf 3566537999737873889999998875237249998656682046999999998769986999877265554-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC-CCCEEEEECCCCCCCCH
Q ss_conf 28999986449999999898999999999807831232013588-96214994788778990
Q 000570 963 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDR-GETFNIVPTSAISGEGI 1023 (1415)
Q Consensus 963 ~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~-g~~v~iVpvSA~tGeGI 1023 (1415)
++ .....++...|...+..+...+....-.. .....+ ...-.++..||..|.++
T Consensus 164 el----~~~~~~~~~~l~~~i~~vn~~i~~~~~~~---~~~~~~~P~~gnV~FaSa~~g~~F 218 (341)
T d1n0ua2 164 EL----QVSKEDLYQTFARTVESVNVIVSTYADEV---LGDVQVYPARGTVAFGSGLHGWAF 218 (341)
T ss_dssp TS----CCCHHHHHHHHHHHHHHHHHHHHHHSCGG---GCCCCCCGGGTCEEEEETTTTEEE
T ss_pred CH----HHHHHHHHHHHCCCCCCCCCEEEECCCCC---CCCCCCCCCCCCEEECCCCCCEEE
T ss_conf 27----76699999997576530242201235533---343012744581675234467278
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.91 E-value=1.1e-24 Score=198.98 Aligned_cols=123 Identities=24% Similarity=0.520 Sum_probs=116.4
Q ss_pred EEECEEEEECCCCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 11030566515620168998599899862235229987623991433478821002365523333798189998159970
Q 000570 1282 AVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1361 (1415)
Q Consensus 1282 av~p~~l~i~~~~vf~~~~p~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~ 1361 (1415)
.||||.|+|+|+|+||.++|+|+|++|..|+|+.|+++|+..+ -..|+|.||+.+++++.+|..|++|||+|.|.
T Consensus 1 ~v~P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~--~~~g~VksIq~~~~~v~~A~~G~~Vai~I~g~--- 75 (128)
T d1g7sa2 1 IIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAIKDA--- 75 (128)
T ss_dssp SCCCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEEETC---
T ss_pred CCEEEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCC--CCEEEEEEEEECCCCCCEECCCCEEEEEECCC---
T ss_conf 9051799976876752799859999993526308997998899--93589999999882111782899899997685---
Q ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 0011114213679849972644459999999630189989999999742117
Q 000570 1362 EQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFK 1413 (1415)
Q Consensus 1362 ~~~~~~gr~f~~~d~l~s~i~r~~i~~Lk~~~~~~ls~~~~~~~~~lk~~~~ 1413 (1415)
++||||+.+|.|||.|||++|+.|+++|+++||.++|++|.+|+++..
T Consensus 76 ----~~gr~i~~gD~L~s~i~~~~i~~lk~~~~~~l~~~e~~ll~el~~ikr 123 (128)
T d1g7sa2 76 ----VYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKR 123 (128)
T ss_dssp ----CBTTTBCTTCEEEECCCHHHHHTTTSCC---CCHHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf ----337789988899996998999999999886689999999999999755
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=4.2e-23 Score=187.08 Aligned_cols=167 Identities=28% Similarity=0.401 Sum_probs=122.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-------CCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 3589806687179998789999998395335-------555760375203672133310000000134456779799993
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-------GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVID 894 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-------geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iID 894 (1415)
.+++..|+|+||+|+|||||+++|++..... ....|+|..++...+ .+...+++++|
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~d 65 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF----------------KLENYRITLVD 65 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE----------------EETTEEEEECC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCC----------------CCCCCCCCCCC
T ss_conf 98987999990778709999999997439562022330012133022230000----------------13785211012
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99985114577501576663079871257997657999999972199559999823664587558880289999864499
Q 000570 895 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 895 TPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
||||.+|...+.+++..+|+++||+|+.+|+.+||.+++..+...++|+|+|+||||++. .+...
T Consensus 66 ~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~-------~~~~~-------- 130 (179)
T d1wb1a4 66 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TEEIK-------- 130 (179)
T ss_dssp CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HHHHH--------
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC-------HHHHH--------
T ss_conf 532232100012344302432121222221102345445555525976201123234457-------78888--------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999898999999999807831232013588962149947887789900489999999999
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 975 i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
....+...+....+. ...+++||+||++|+||++|+..|...+..
T Consensus 131 -------~~~~~~~~~~~~~~~----------~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 131 -------RTEMIMKSILQSTHN----------LKNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp -------HHHHHHHHHHHHSSS----------GGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf -------899999999987505----------788738998766782999999999961886
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=1.5e-17 Score=145.03 Aligned_cols=155 Identities=24% Similarity=0.330 Sum_probs=110.7
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH-----
Q ss_conf 066871799987899999983953355557603752036721333100000001344567797999939998511-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 901 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F----- 901 (1415)
.|+|+|++++|||||+++|++..+..+..+|+|+++..+. +..+.|+||||+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~--------------------~~~~~ivDtpG~~~~~~~~~ 61 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--------------------WKNHKIIDMPGFGFMMGLPK 61 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--------------------ETTEEEEECCCBSCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCEEECCCCCC--------------------CCCCEECCCCCCEECCCCCC
T ss_conf 8999999998899999999689853527897720454244--------------------22311003677500121111
Q ss_pred ----------HHHHHHCCCCCCCEEEEEECC-----------CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf ----------457750157666307987125-----------79976579999999721995599998236645875588
Q 000570 902 ----------TNLRSRGSGLCDIAILVVDIM-----------HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 960 (1415)
Q Consensus 902 ----------~~lr~rg~s~aDiaILVVDa~-----------~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~ 960 (1415)
......++..+|++++|||+. .++..+..+.+.++...++|+|+|+||+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~----- 136 (184)
T d2cxxa1 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN----- 136 (184)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-----
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHH-----
T ss_conf 122221024566665301113300266422355101113433132077899999999849988998764322435-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 802899998644999999989899999999980783123201358896214994788778990048999999999
Q 000570 961 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 961 ~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
. .. ....+...+ ...+. .....++|+||++|.||++|+..|..+++
T Consensus 137 -~--~~---------------~~~~~~~~~-~~~~~----------~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 137 -V--QE---------------VINFLAEKF-EVPLS----------EIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp -H--HH---------------HHHHHHHHH-TCCGG----------GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -H--HH---------------HHHHHHHHH-CCCCC----------CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf -7--88---------------999999984-56511----------26873899977889899999999998756
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=1.3e-17 Score=145.51 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=109.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCC--CCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCC-
Q ss_conf 35898066871799987899999983953--355557603752036721333100000001344567797999939998-
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 898 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGH- 898 (1415)
...-|.|+|+|++|+|||||+++|++... ......+.|.++...... ..+.++|++|.
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~~~d~~~~~ 80 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-------------------DELHFVDVPGYG 80 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-------------------TTEEEEECCCBC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCC-------------------CCCEEEEEEEEC
T ss_conf 8899899998999987999999852987468860346512301211245-------------------431378887513
Q ss_pred ------------CCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf ------------51145775015766630798712579976579999999721995599998236645875588802899
Q 000570 899 ------------ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 966 (1415)
Q Consensus 899 ------------e~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~ 966 (1415)
..+.....++...+|++++|||+.++++.++.++++++..+++|++||+||+|+.. ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~------~~~~~- 153 (195)
T d1svia_ 81 FAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP------KGKWD- 153 (195)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------GGGHH-
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCC------HHHHH-
T ss_conf 32112221110366776543112110122221201456421222110000025575110001203258------88899-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99864499999998989999999998078312320135889621499478877899004899999999
Q 000570 967 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 967 ~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+..+...+. + ....+++++||.+|+|+.+|+.+|..++
T Consensus 154 --------------~~~~~~~~~l~---~-----------~~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 154 --------------KHAKVVRQTLN---I-----------DPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp --------------HHHHHHHHHHT---C-----------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHC---C-----------CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --------------99999999864---1-----------6999789996889989999999999982
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=8.3e-18 Score=147.06 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=108.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 589806687179998789999998395335-5557603752036721333100000001344567797999939998511
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
..+++|+|+|++++|||||+++|++.++.. ....+.|.......... ....+.++||||+..+
T Consensus 3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~----------------~~~~~~~~DtpG~~~~ 66 (178)
T d1wf3a1 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE----------------GRRQIVFVDTPGLHKP 66 (178)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE----------------TTEEEEEEECCCCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEE----------------EEEEEEECCCCCCCCC
T ss_conf 547699999999999999999996888503315577322112111332----------------0013553034431111
Q ss_pred --------HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --------45775015766630798712579976579999999721--99559999823664587558880289999864
Q 000570 902 --------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 902 --------~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~--~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.....+++..||++|||+|+.+++..+...++..++.. ++|+|+|+||+|+.. ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~------~~~-------- 132 (178)
T d1wf3a1 67 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK------YPE-------- 132 (178)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS------SHH--------
T ss_pred CCCCCHHCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCHHHHEECCCCCHHHHHHHCCCCCCC------CHH--------
T ss_conf 222200001111222233200356551266301321120121001232202222000160001------889--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 49999999898999999999807831232013588962149947887789900489999999
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 972 ~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
..+..+... .+...++++||++|.||.+|+..|..+
T Consensus 133 -------------~~~~~~~~~-------------~~~~~~~~iSA~~~~gi~~L~~~i~~~ 168 (178)
T d1wf3a1 133 -------------EAMKAYHEL-------------LPEAEPRMLSALDERQVAELKADLLAL 168 (178)
T ss_dssp -------------HHHHHHHHT-------------STTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHH-------------CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf -------------999999862-------------146865999667897999999999984
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.5e-17 Score=145.12 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=110.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCC-----
Q ss_conf 80668717999878999999839533-555576037520367213331000000013445677979999399985-----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE----- 899 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe----- 899 (1415)
..|+|+||+++|||||+++|++.... .+...+.|.......+. +.+..+.++||||+.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~~~ 72 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF----------------IDGRKYVFVDTAGLRRKSRV 72 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE----------------ETTEEEEESSCSCC------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEC----------------CCCCEEEEECCCCCCCCCCC
T ss_conf 88999999999999999999778762242256543332001220----------------49923465236885101221
Q ss_pred -------CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -------1145775015766630798712579976579999999721995599998236645875588802899998644
Q 000570 900 -------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 972 (1415)
Q Consensus 900 -------~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~ 972 (1415)
.+.....+.+..+|+++||+|+.+|+..++..++.++...+.|+|+++||+|+... ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~------~~--------- 137 (186)
T d1mkya2 73 EPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH------RE--------- 137 (186)
T ss_dssp -----CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT------GG---------
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCC------HH---------
T ss_conf 222210001177898986099999960345650266889999999708860530010001101------01---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999898999999999807831232013588962149947887789900489999999999
Q 000570 973 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 973 ~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
..+..+...+.... + +...++++++||++|.||.+|+..|...+..
T Consensus 138 --------~~~~~~~~~~~~~~-----~-----~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 138 --------KRYDEFTKLFREKL-----Y-----FIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp --------GCHHHHHHHHHHHC-----G-----GGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH-----C-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --------10256899999885-----1-----1689808998678998999999999999970
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=4.2e-17 Score=141.71 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=108.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH----
Q ss_conf 0668717999878999999839533-55557603752036721333100000001344567797999939998511----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 901 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F---- 901 (1415)
.|+|+|++++|||||+++|++.... .+...+.|.......+.. ....+.++||||....
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~~~~~ 65 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW----------------YGKTFKLVDTCGVFDNPQDI 65 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE----------------TTEEEEEEECTTTTSSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCC----------------CCCCCCCCCCCCEEEEECCC
T ss_conf 89999999998999999996777530314476353132221221----------------22111112454213210122
Q ss_pred -----HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -----457750157666307987125799765799999997219955999982366458755888028999986449999
Q 000570 902 -----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 902 -----~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~ 976 (1415)
.......+..+|++++++++.++...++.+++.+++..++|+|||+||+|++..
T Consensus 66 ~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~--------------------- 124 (171)
T d1mkya1 66 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--------------------- 124 (171)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---------------------
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---------------------
T ss_conf 33222200002355571899960112112222111122222222110013102334556---------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999898999999999807831232013588962149947887789900489999999999
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 977 ~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
.. ..+...+...+ ...++|+||++|.||++|+.+|...++.
T Consensus 125 --~~---~~~~~~~~~~~--------------~~~~i~iSAk~g~gid~L~~~i~~~l~e 165 (171)
T d1mkya1 125 --FE---REVKPELYSLG--------------FGEPIPVSAEHNINLDTMLETIIKKLEE 165 (171)
T ss_dssp --HH---HHTHHHHGGGS--------------SCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --HH---HHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf --56---67889998618--------------9976999667898999999999986977
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.74 E-value=3.1e-17 Score=142.70 Aligned_cols=199 Identities=20% Similarity=0.149 Sum_probs=118.2
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEE-----------------------CCCC-
Q ss_conf 0668717999878999999839533555576037520367213331000000-----------------------0134-
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE-----------------------LKAN- 882 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~-----------------------i~~~- 882 (1415)
||+|+||+|+|||||+++|++........+.|+.+.+....+....-..... +...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988438768999667664457886453099998878776764036775122028677668
Q ss_pred --------CCCCCCCEEEEECCCCCCHHHHHHHCCCCC-----CCEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEE
Q ss_conf --------456779799993999851145775015766-----6307987125799765799999997-----2199559
Q 000570 883 --------ATLKVPGLLVIDTPGHESFTNLRSRGSGLC-----DIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFI 944 (1415)
Q Consensus 883 --------~~~~~~~l~iIDTPGHe~F~~lr~rg~s~a-----DiaILVVDa~~Gv~~QT~E~l~ll~-----~~~vP~I 944 (1415)
.....+.+.++|||||..+...+.++...+ +++++|+|+..+.++|+..+..+.. ...+|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 161 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI 161 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999998412565436543665314788999999998632476589996365566750476699999999987078742
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 99982366458755888028999986449999999898999999999807831232013588962149947887789900
Q 000570 945 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 1024 (1415)
Q Consensus 945 VviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~ 1024 (1415)
+++||+|++. .+....+......+. .+...+..... ....+...+.....++...++++|+||.+|+||.
T Consensus 162 vvinK~D~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~ 231 (244)
T d1yrba1 162 PALNKVDLLS-------EEEKERHRKYFEDID-YLTARLKLDPS--MQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 231 (244)
T ss_dssp EEECCGGGCC-------HHHHHHHHHHHHCHH-HHHHHHHHCCS--HHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred EEEECCCCCC-------HHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 6653201435-------778889999888899-99999853367--8999999998778863799818998799999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 48999999999
Q 000570 1025 DLLLLLVQWTQ 1035 (1415)
Q Consensus 1025 eLl~~l~~l~~ 1035 (1415)
+|+.+|...+.
T Consensus 232 ~L~~~l~e~~~ 242 (244)
T d1yrba1 232 DLETLAYEHYC 242 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
T ss_conf 99999999712
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=4.1e-16 Score=134.27 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEE--EECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCC----
Q ss_conf 80668717999878999999839533555576037--520367213331000000013445677979999399985----
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 899 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq--~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe---- 899 (1415)
|.|+|+|++++|||||+++|++.........+.|. .++.... .....+.|+||||+.
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~~~DtpG~~~~~~ 64 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-----------------SEEERFTLADIPGIIEGAS 64 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-----------------SSSCEEEEEECCCCCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEECEEEE-----------------CCCCEEEECCCCEEECCCH
T ss_conf 88999899999899999999689971534689716665641552-----------------3787489828880652751
Q ss_pred ---CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---1145775015766630798712579976579999999-----72199559999823664587558880289999864
Q 000570 900 ---SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 900 ---~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll-----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q 971 (1415)
.+.....+.+..++++++|+|+..............+ ...+.|+|+|+||+|+.. ..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~-------- 129 (180)
T d1udxa2 65 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE-------EE-------- 129 (180)
T ss_dssp GSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-------HH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------HH--------
T ss_conf 777999999998775345665300124653210133444311220001021101155665552-------77--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4999999989899999999980783123201358896214994788778990048999999999
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
.+..+...+.. ..+++|++||++|+||++|+..|..+++
T Consensus 130 ----------~~~~~~~~~~~---------------~~~~~~~iSA~tg~gid~L~~~i~~~l~ 168 (180)
T d1udxa2 130 ----------AVKALADALAR---------------EGLAVLPVSALTGAGLPALKEALHALVR 168 (180)
T ss_dssp ----------HHHHHHHHHHT---------------TTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHH---------------CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ----------89999999975---------------6983899976788899999999999876
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.2e-15 Score=130.68 Aligned_cols=155 Identities=16% Similarity=0.100 Sum_probs=102.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+.+|++..+.......++.+.....+.... ....+.||||||++.|..++..
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~wDt~G~e~~~~~~~~ 73 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND--------------KRIKLQIWDTAGQERYRTITTA 73 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEC--------------CEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999198999999973988865145555310468998624--------------3699999989985545889999
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHH-HHHHH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 157666307987125799765799-99999---72199559999823664587558880289999864499999998989
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E-~l~ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 983 (1415)
.++.+|++|||+|+++.-...... .+..+ .....|++|+.||+|+.... ..+.
T Consensus 74 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~v~~------------------- 130 (169)
T d3raba_ 74 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----VVSS------------------- 130 (169)
T ss_dssp TTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGC----CSCH-------------------
T ss_pred HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC----CCCH-------------------
T ss_conf 97438778999978110434312344332102367752488997311422233----2110-------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999998078312320135889621499478877899004899999999
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 984 ~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+....... .++++.|||++|.||.+++..|+..+
T Consensus 131 ~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 131 ERGRQLADHL---------------GFEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp HHHHHHHHHH---------------TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 3667799875---------------98899956999959999999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.2e-15 Score=127.57 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=104.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|....+.......+........+... .....+.||||||++.|..++.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~i~D~~G~~~~~~~~~~ 73 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG--------------GKYVKLQIWDTAGQERFRSVTRS 73 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET--------------TEEEEEEEEEECCSGGGHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEC--------------CCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9999999909999999997098886555331010256799716--------------71015889978983331465788
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15766630798712579976579999-999---72199559999823664587558880289999864499999998989
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-NLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l-~ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 983 (1415)
.++.+|++|+|+|..+.-.......+ ..+ ...++|+|++.||+|+..... ..
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~-------------------- 129 (174)
T d2bmea1 74 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VT-------------------- 129 (174)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SC--------------------
T ss_pred HHHHCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHC----HH--------------------
T ss_conf 865277999999555405677776530111124687318999970344321000----01--------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999807831232013588962149947887789900489999999999
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 984 ~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
......+... ..++++.+||++|.||.++|.+++..+-.
T Consensus 130 ~~~~~~~~~~--------------~~~~~~e~Sak~~~gi~e~f~~l~~~i~~ 168 (174)
T d2bmea1 130 FLEASRFAQE--------------NELMFLETSALTGENVEEAFVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4578999985--------------79889994079896999999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.4e-15 Score=128.50 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=105.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|....+......+++..+....+..... ...+.||||||++.|..++.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~e~~~~~~~ 72 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE--------------KVKLQIWDTAGQERFRSITQ 72 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCE--------------EEEEEEEECCCCHHHHHHHH
T ss_conf 9999999991989999999729998764665542378999999999--------------99999998998543588999
Q ss_pred HCCCCCCCEEEEEECCCCCCHH-HHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0157666307987125799765-799999997---219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~Q-T~E~l~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..+..+|++|+|+|+.+...-. ...++..+. ...+|+|++.||+|+... ..+.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~------~~v~----------------- 129 (171)
T d2ew1a1 73 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER------REVS----------------- 129 (171)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------CSSC-----------------
T ss_pred HHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC------CCHH-----------------
T ss_conf 99743266888422143200112456655420133463568999962142200------0023-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99999999980783123201358896214994788778990048999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
...+ ..+... ..+++++|||++|.||.+++..|+.
T Consensus 130 ~~~~-~~~~~~--------------~~~~~~~~SAktg~gV~e~f~~l~~ 164 (171)
T d2ew1a1 130 QQRA-EEFSEA--------------QDMYYLETSAKESDNVEKLFLDLAC 164 (171)
T ss_dssp HHHH-HHHHHH--------------HTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHH-HHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 5677-789986--------------7978999746999898999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.64 E-value=3.7e-15 Score=127.08 Aligned_cols=155 Identities=24% Similarity=0.267 Sum_probs=103.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|...|+|+|..++|||||+++|.+..+.. ++...+.+...+ .+....+.++|+||+..|..
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-----~~~~~~~~~~~i--------------~~~~~~~~i~d~~g~~~~~~ 75 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-----ITPTQGFNIKSV--------------QSQGFKLNVWDIGGQRKIRP 75 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEE-----EEEETTEEEEEE--------------EETTEEEEEEECSSCGGGHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCC-----CEEEEEEEEEEE--------------CCCCEEEEEEECCCCCCCHH
T ss_conf 87799999999989999999996487775-----202331058985--------------04885676763254210014
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHH-HHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7750157666307987125799765-79999999----721995599998236645875588802899998644999999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~Q-T~E~l~ll----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
++...+..+|++|+|+|+++....+ ....+..+ ...++|++|++||+|+... ...
T Consensus 76 ~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~------~~~-------------- 135 (176)
T d1fzqa_ 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA------APA-------------- 135 (176)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC------CCH--------------
T ss_conf 778876415526886204565424444455443344303699859999974054542------428--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 989899999999980783123201358896214994788778990048999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
..+...+....+. ...++++++||++|+||.+++.+|+.
T Consensus 136 -----~~~~~~~~~~~~~----------~~~~~~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 136 -----SEIAEGLNLHTIR----------DRVWQIQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp -----HHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf -----9999998787777----------36988999869989899999999996
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=5.2e-16 Score=133.46 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=109.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|++..+......+++..+....+..... ...+.||||||++.|..++..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~e~~~~~~~~ 74 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK--------------RIKLQIWDTAGQERFRTITTA 74 (173)
T ss_dssp EEEECCCCC----------------CHHHHHCEEEEEEEEEETTE--------------EEEEEEEEC---------CCT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCE--------------EEEEEEEECCCCHHHHHHHHH
T ss_conf 999999994999999999709888754764541278999999999--------------999999989985645889998
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHH----HH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 157666307987125799765799999----99---72199559999823664587558880289999864499999998
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN----LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l~----ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
.++.+|++|||+|+.+ +++...+. .+ ...++|+|++.||.|+... .....
T Consensus 75 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~----~~~~~---------------- 131 (173)
T d2fu5c1 75 YYRGAMGIMLVYDITN---EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSK---------------- 131 (173)
T ss_dssp TTTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC----CCSCH----------------
T ss_pred HCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH----CCCHH----------------
T ss_conf 5269989999998987---144899988887765330478529999821452000----13079----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9899999999980783123201358896214994788778990048999999999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1038 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l 1038 (1415)
..+....... .++++.|||.+|+||.+++.+|+..+...+
T Consensus 132 ---~~~~~~~~~~---------------~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 132 ---ERGEKLALDY---------------GIKFMETSAKANINVENAFFTLARDIKAKM 171 (173)
T ss_dssp ---HHHHHHHHHH---------------TCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---9998778755---------------988999957999898999999999999864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.1e-15 Score=126.03 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=102.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+.+|....+.....+.+....... .... .....+.||||||++.|..++..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~-~~~~--------------~~~~~l~i~D~~g~~~~~~~~~~ 69 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVD--------------GKQVELALWDTAGLEDYDRLRPL 69 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEET--------------TEEEEEEEEEECCSGGGTTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCC--------------CCCEEEECCCCCCCCHHCCCCHH
T ss_conf 99999899388999999971999887288224411221-0035--------------42024502456764000003022
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHH-----HHHHH--CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 15766630798712579976579999-----99972--199559999823664587558880289999864499999998
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-----NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~--~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
.+..+|++|||+|+++ +.+.+.+ ..+.. .++|+||+.||+|+... ......+.......
T Consensus 70 ~~~~~~~~ilv~d~~~---~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~~~----- 135 (177)
T d1kmqa_ 70 SYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND------EHTRRELAKMKQEP----- 135 (177)
T ss_dssp GCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC------HHHHHHHHHTTCCC-----
T ss_pred HCCCCHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH------HHHHHHHHHHHCCC-----
T ss_conf 1031004434202102---578887888779999973899756886632566421------56789988751033-----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 98999999999807831232013588962149947887789900489999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
............. +.++++.|||++|.||.++|..++..
T Consensus 136 v~~~e~~~~a~~~--------------~~~~~~E~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 136 VKPEEGRDMANRI--------------GAFGYMECSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp CCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 5599999999981--------------99679993589996999999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.63 E-value=2.1e-15 Score=128.85 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|...|+|+|..++|||||+.+|.+..+.. .+.|..+....+. +....+.||||||+..|..
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~---~~~t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~~ 61 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDT---ISPTLGFNIKTLE----------------HRGFKLNIWDVGGQKSLRS 61 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSS---CCCCSSEEEEEEE----------------ETTEEEEEEEECCSHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEEEEEEECC----------------CCCCCEEEEECCCCHHHHH
T ss_conf 92799999999989999999980899873---0235753043011----------------3454303663376055415
Q ss_pred HHHHCCCCCCCEEEEEECCCCCC-HHHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 77501576663079871257997-6579999999----721995599998236645875588802899998644999999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~-~QT~E~l~ll----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
++...+..++.+++|+|+.+-.. ......|..+ ...++|++|++||+|+... ...
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~~-------------- 121 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA------LSC-------------- 121 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC------CCH--------------
T ss_conf 777641210024022201232227888876665432101579966999741452012------678--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98989999999998078312320135889621499478877899004899999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
......+....+. ...+++++|||++|+||.+++.+|+..+
T Consensus 122 -----~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 122 -----NAIQEALELDSIR----------SHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp -----HHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH----------CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -----9999999865643----------3798899997888979899999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.63 E-value=5.7e-15 Score=125.65 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=102.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|....+....... ++..+.... +....+++|||||+..|...+..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~~~~~~~~T----~~~~~~~~~--------------~~~~~~~i~D~~G~~~~~~~~~~ 66 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKIT--------------KGNVTIKLWDIGGQPRFRSMWER 66 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCSCCCC----CSEEEEEEE--------------ETTEEEEEEEECCSHHHHTTHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCC----CEEEEEEEE--------------EEEEEEEEEECCCCCCCCCCCCC
T ss_conf 999999998989999999719788740564----102442454--------------22688888401000121122222
Q ss_pred CCCCCCCEEEEEECCCCCCH-HHHHHHH-HHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15766630798712579976-5799999-997---219955999982366458755888028999986449999999898
Q 000570 908 GSGLCDIAILVVDIMHGLEP-QTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~-QT~E~l~-ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
.+..++++|+|+|+.+...- .....+. ++. ..++|+++++||+|+... .+.
T Consensus 67 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~------~~~------------------ 122 (164)
T d1zd9a1 67 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA------LDE------------------ 122 (164)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC------CCH------------------
T ss_pred CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH------HHH------------------
T ss_conf 22233101101332122111002466666554421469858999852563012------567------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807831232013588962149947887789900489999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
..+...+....+. ...++++++||.+|+||.+++.+|+..
T Consensus 123 -~~i~~~~~~~~~~----------~~~~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 123 -KELIEKMNLSAIQ----------DREICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp -HHHHHHTTGGGCC----------SSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf -8899999999888----------579989998585794999999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.3e-14 Score=122.87 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=99.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+.........+. ......+.++ .....+.||||||++.|..++.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~--~~~~~~i~~~--------------~~~~~l~i~D~~g~e~~~~~~~ 66 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYDRSIVVD--------------GEEASLMVYDIWEQDGGRWLPG 66 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---------C--EEEEEEEEET--------------TEEEEEEEEECC-------CHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE--EEECCEEECC--------------CCCCCEEEEECCCCCCCCEECC
T ss_conf 99998989939999999981885677588156--6530010012--------------3332103420111222000023
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHH----HH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999999----97----21995599998236645875588802899998644999999
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLNL----LK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l~l----l~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
..+..+|++|||+|+++ +.+.+.+.. +. ...+|+|++.||+|+...+. .+..
T Consensus 67 ~~~~~~d~~ilv~d~t~---~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----v~~~------------- 126 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTD---KGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSVD------------- 126 (168)
T ss_dssp HHHTSCSEEEEEEETTC---HHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----SCHH-------------
T ss_pred CCHHHHHHHCEECCCCC---CCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCC----HHHH-------------
T ss_conf 10111110100013422---222112121211000024555313798503655266511----0699-------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989899999999980783123201358896214994788778990048999999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
.. ..+... ..+++++|||++|.||.+++..|+..+.
T Consensus 127 ------~~-~~~~~~--------------~~~~~~e~Sak~~~~v~~~f~~l~~~i~ 162 (168)
T d2gjsa1 127 ------EG-RACAVV--------------FDCKFIETSAALHHNVQALFEGVVRQIR 162 (168)
T ss_dssp ------HH-HHHHHH--------------HTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ------99-999986--------------5988999727999499999999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=5.9e-15 Score=125.54 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=104.0
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|++..+.....++++.......+.... ....|+||||||++.|..++.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~e~~~~~~~ 73 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG--------------KTVKLQIWDTAGQERFRTITS 73 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT--------------EEEEEEEECCTTTTTTTCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEE--------------EEEEEEEEECCCCHHHHHHHH
T ss_conf 999999999098999999961988887288543257899999965--------------789999998998543578999
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-HHHH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-9999---7219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..++.+|++|||+|++....-+.... +..+ ....+|+|++.||+|+.... ....
T Consensus 74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~----~~~~------------------ 131 (194)
T d2bcgy1 74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR----VVEY------------------ 131 (194)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC----CSCH------------------
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC----CHHH------------------
T ss_conf 983258789999967623445667664455664046775399997214531023----2158------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999980783123201358896214994788778990048999999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
......... ..++++++||++|.||.+++..++..+.
T Consensus 132 -~~~~~~~~~---------------~~~~~~e~SAk~g~gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 132 -DVAKEFADA---------------NKMPFLETSALDSTNVEDAFLTMARQIK 168 (194)
T ss_dssp -HHHHHHHHH---------------TTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHC---------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -887543321---------------4764699864757669999999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.3e-15 Score=124.84 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=105.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|+.++|||||+.+|++..+......+++.......+..+.. ...+.||||||++.|..++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 71 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ--------------KIKLQIWDTAGQERFRAVTR 71 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTE--------------EEEEEEEECTTGGGTCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCE--------------EEEEEEECCCCCHHHHHHHH
T ss_conf 9999999994989999999729988756544343212579998999--------------99888715677336778888
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHH-HHHHHH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579-999999---7219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~-E~l~ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+.. ..+..+ .....|++++.||+|+...+.. .
T Consensus 72 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~----~------------------- 128 (166)
T d1z0fa1 72 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV----T------------------- 128 (166)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----C-------------------
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCC----H-------------------
T ss_conf 87237858999740675677777888899998614565239998036565321022----7-------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807831232013588962149947887789900489999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
...+. .+... ..++++.|||++|.||.+++..++..
T Consensus 129 ~~~~~-~~~~~--------------~~~~~~e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 129 YEEAK-QFAEE--------------NGLLFLEASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp HHHHH-HHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH-HHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999-99998--------------59989998689997999999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.3e-15 Score=124.42 Aligned_cols=169 Identities=16% Similarity=0.095 Sum_probs=108.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|+.++|||||+.+|.+..+........+..+....+.++...... .........+.++|||||+.|..++..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG----SSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCC----CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999999919899999996199998647865403667899990100001----346663588625557864566889999
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH--------HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 157666307987125799765799999997--------219955999982366458755888028999986449999999
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLNLLK--------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l~ll~--------~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
.+..+|++|||+|+.+ +.+.+.+.... ....|++|+.||+|+...+. .+.
T Consensus 84 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----v~~--------------- 141 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VNE--------------- 141 (186)
T ss_dssp HHTTCCEEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SCH---------------
T ss_pred HHHCCCEEEEEEECCC---CCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHC----CHH---------------
T ss_conf 9726988999996323---454114542112012213677842999963124102210----048---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89899999999980783123201358896214994788778990048999999999999985
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1041 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~e~ 1041 (1415)
..+....... .++++++||++|.||.+++.+|+..+...+.+.
T Consensus 142 ----~e~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~~ 184 (186)
T d2f7sa1 142 ----RQARELADKY---------------GIPYFETSAATGQNVEKAVETLLDLIMKRMEQC 184 (186)
T ss_dssp ----HHHHHHHHHT---------------TCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf ----9999999984---------------988999958999798999999999999988750
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.6e-15 Score=123.92 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=107.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+|.+..+.......++..+....+..... ...+.||||||++.|..++
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 73 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN--------------KAKLAIWDTAGQERFRTLT 73 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECSSGGGCCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECC--------------CCEEEEEECCCCHHHHHHH
T ss_conf 28999998990889999999719988750442210003679999512--------------3489999899846558899
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5015766630798712579976579-9999997----2199559999823664587558880289999864499999998
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~-E~l~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
...+..+|++|+|+|+.+....+.. ..+..+. ....|++++.||.|....+ .+
T Consensus 74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----v~----------------- 131 (177)
T d1x3sa1 74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VD----------------- 131 (177)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SC-----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC-----CC-----------------
T ss_conf 99976288899999897861221102221011024554430357874023333323-----34-----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998078312320135889621499478877899004899999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+....... .++++.+||++|+||.+++.+++..+
T Consensus 132 --~~~~~~~~~~~---------------~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 132 --RNEGLKFARKH---------------SMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp --HHHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --89999999977---------------98899984899979999999999997
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.60 E-value=3.7e-15 Score=127.08 Aligned_cols=159 Identities=24% Similarity=0.244 Sum_probs=104.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++|||||+.+|.+...... ..+.+..... ..+....+.+|||||+..|..
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-----~~t~~~~~~~--------------~~~~~~~~~i~D~~g~~~~~~ 76 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVVTT-----KPTIGFNVET--------------LSYKNLKLNVWDLGGQTSIRP 76 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEE-----CSSTTCCEEE--------------EEETTEEEEEEEEC----CCT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCC-----CCCCCEEEEE--------------EEECCEEEEEEECCCCCCCCH
T ss_conf 668999999999988999988733877764-----3306547999--------------963889999995564200114
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHHH-HHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 77501576663079871257997657-99999997----21995599998236645875588802899998644999999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~QT-~E~l~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
++...+..+|++|+|+|+.+...... ...|..+. ..++|++|++||+|+... .+.
T Consensus 77 ~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~------~~~-------------- 136 (182)
T d1moza_ 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA------LSA-------------- 136 (182)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC------CCH--------------
T ss_conf 577651344068888641122110258999999877531477626999996256666------678--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9898999999999807831232013588962149947887789900489999999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
..+...+....+. ...+++++|||++|+||.+++.+|...+..
T Consensus 137 -----~~i~~~~~~~~~~----------~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 137 -----SEVSKELNLVELK----------DRSWSIVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp -----HHHHHHTTTTTCC----------SSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf -----9999999999876----------179889997798997999999999999997
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.5e-14 Score=118.86 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=102.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCC-CCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 668717999878999999839533555-5760375203672133310000000134456779799993999851145775
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
|+|+|..++|||||+.+|+...+.... ...+..++....+..... ...++||||||++.|..++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~e~~~~~~~ 74 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV--------------KVKLQMWDTAGQERFRSVTH 74 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE--------------EEEEEEEECCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCC--------------EEEEEEEECCCCHHHHHHHH
T ss_conf 9999999929999999997199886541202300367778885483--------------89999998998366688889
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-HHH-H--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-999-7--219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll-~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..++.+|++|+|+|..+....+....+ ..+ . ....|+|++.||+|....+. .+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----v~~------------------ 132 (170)
T d2g6ba1 75 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKR------------------ 132 (170)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCH------------------
T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHCCC----CCH------------------
T ss_conf 8614786558986287555503455554554431587735999973303032066----569------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078312320135889621499478877899004899999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+....... .++++++||++|.||.+++.+|+..+
T Consensus 133 -~~~~~~~~~~---------------~~~~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 133 -EDGEKLAKEY---------------GLPFMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp -HHHHHHHHHH---------------TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf -9999999984---------------98799984898969999999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.2e-14 Score=121.22 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=104.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+......+++.......+..... ...+.|+||||++.|..++.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~e~~~~~~~ 71 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK--------------TIKAQIWDTAGQERYRRITS 71 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE--------------EEEEEEEECSSGGGTTCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCE--------------EEEEEECCCCCCHHHHHHHH
T ss_conf 9999999990989999999829988765655321035579999998--------------88998425687377888889
Q ss_pred HCCCCCCCEEEEEECCCCCC-HHHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997-65799999997---219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLE-PQTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~-~QT~E~l~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..+..+|++|||+|..+.-. ......+..+. ..++|++++.||+|+... +....
T Consensus 72 ~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~----~~~~~------------------ 129 (175)
T d2f9la1 72 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVPT------------------ 129 (175)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSCH------------------
T ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----CCCHH------------------
T ss_conf 77540675899997888654034788999999845899839999765154002----43369------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999807831232013588962149947887789900489999999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
.....+... ..++++++||++|.||.+++..++..+..
T Consensus 130 --~~~~~~~~~--------------~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 130 --DEARAFAEK--------------NNLSFIETSALDSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp --HHHHHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCC--------------CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf --998776404--------------68669999649996999999999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=4.2e-14 Score=119.08 Aligned_cols=156 Identities=20% Similarity=0.178 Sum_probs=104.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 58980668717999878999999839533555576037520367213331000000013445677979999399985114
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|...|+|+|..++|||||+.+|....+.......+............ .....+.||||+|+..|.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~i~d~~g~~~~~ 67 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ--------------NELHKFLIWDTAGLERFR 67 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET--------------TEEEEEEEEEECCSGGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCEEEEECCCCHHHH
T ss_conf 745389999989949999999997398886446530012112211123--------------332100353047741245
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH-------HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5775015766630798712579976579999999-------721995599998236645875588802899998644999
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-------KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll-------~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i 975 (1415)
.++...+..+|++|||+|+.+ +++.+.+... .....|++++.||+|+...+ ....
T Consensus 68 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~----------- 129 (167)
T d1z0ja1 68 ALAPMYYRGSAAAIIVYDITK---EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR----EVME----------- 129 (167)
T ss_dssp GGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC----CSCH-----------
T ss_pred HHHHHHHHHCCCEEEEEEECH---HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCC----CHHH-----------
T ss_conf 777998753054589863010---2455567776555440368862389962311010023----2048-----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 9999898999999999807831232013588962149947887789900489999999
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 976 ~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
.. ...+... ..+++++|||++|.||.+++..|+..
T Consensus 130 --------~~-~~~~~~~--------------~~~~~~e~SAk~~~nV~e~f~~l~~~ 164 (167)
T d1z0ja1 130 --------RD-AKDYADS--------------IHAIFVETSAKNAININELFIEISRR 164 (167)
T ss_dssp --------HH-HHHHHHH--------------TTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred --------HH-HHHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf --------99-9999998--------------49999999359997989999999970
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=1.9e-14 Score=121.63 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=100.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+.+|++..+........+........... ......+.|+||||++.+..++..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~~~~d~~g~~~~~~~~~~ 71 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-------------GDKVATMQVWDTAGQERFQSLGVA 71 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-------------SSCCEEEEEECCC----------C
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC-------------CCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 9999999969899999997098887637654531012346405-------------763120122103872012467788
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHH-HHHHH-------HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1576663079871257997657999-99997-------219955999982366458755888028999986449999999
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIES-LNLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~-l~ll~-------~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
.+..+|++|||+|+++...-..... +..+. ..++|+||++||+|+...... ..
T Consensus 72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~---v~---------------- 132 (175)
T d1ky3a_ 72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---VS---------------- 132 (175)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC---SC----------------
T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCC---HH----------------
T ss_conf 75215548998500123332113320115666641013566867998124220122120---15----------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 8989999999998078312320135889621499478877899004899999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
......+... .+.+++++|||++|.||.+++.+|++.+
T Consensus 133 ----~~~~~~~~~~-------------~~~~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 133 ----EKSAQELAKS-------------LGDIPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp ----HHHHHHHHHH-------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-------------CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----7778899998-------------0997699991899949999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=9.7e-15 Score=123.91 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=107.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+.+|+...+......+++.......+..... ...+.||||||++.|..++.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~~~i~Dt~G~~~~~~~~~~ 70 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK--------------KVKLQIWDTAGQERFRTITTA 70 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC--------------EEEEEEECCTTGGGTSCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCE--------------EEEEEEEECCCCHHHHHHHHH
T ss_conf 999999996789999999868898763774230378999998898--------------999999989995556899999
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHH----HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 157666307987125799765799999----9972199559999823664587558880289999864499999998989
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESLN----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l~----ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 983 (1415)
.++.+|++|+|+|.++.-..+....+. .......|++++.||.|..... ...
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~------~~~------------------ 126 (166)
T d1g16a_ 71 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV------VTA------------------ 126 (166)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC------SCH------------------
T ss_pred HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH------HHH------------------
T ss_conf 97349899999989976579999754400010146765046521100233211------159------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999807831232013588962149947887789900489999999999
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1036 (1415)
Q Consensus 984 ~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~ 1036 (1415)
.....+... ..+++++|||++|+||.+++.+|+.++..
T Consensus 127 -~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 127 -DQGEALAKE--------------LGIPFIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp -HHHHHHHHH--------------HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -999999986--------------69769998799997999999999999996
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4e-14 Score=119.28 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=105.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+......+++.......+.... ....+.+|||||++.|..++.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~~~~~ 67 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED--------------RTIRLQLWDTAGQERFRSLIP 67 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSS--------------CEEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCC--------------CCEEEEECCCCCCCHHCCCHH
T ss_conf 899999899098999999984999876366223100000110599--------------723565425688511000438
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-HHHH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-9999---7219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..+..+|++|||+|+.+....+.... +..+ ...++|++++.||+|+.... ...
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~~~------------------- 124 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR----QVS------------------- 124 (164)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC----CSC-------------------
T ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHH-------------------
T ss_conf 886166449996065543132666766899998508996499973103404544----566-------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078312320135889621499478877899004899999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+....... .++++.|||++|.||.+++..|...+
T Consensus 125 ~~~~~~~~~~~---------------~~~~~e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 125 IEEGERKAKEL---------------NVMFIETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp HHHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 88999999974---------------98799962899969999999999961
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.6e-14 Score=119.56 Aligned_cols=167 Identities=16% Similarity=0.240 Sum_probs=104.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
++..|+|+|..++|||||+.+|....+.....+.+............ ....+.||||||++.|..
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~---------------~~~~l~i~D~~g~~~~~~ 66 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG---------------EPYTLGLFDTAGQEDYDR 66 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETT---------------EEEEEEEEEECCSGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECC---------------CEEEEECCCCCCCHHHHH
T ss_conf 75699999999969999999997199998758831021002575079---------------424650244442032324
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHHHHHHHH-----HHH--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7750157666307987125799765799999-----997--219955999982366458755888028999986449999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-----LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-----ll~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~ 976 (1415)
++...+..+|++|||+|+++ +.+.+.+. .+. ..++|++++.||+|+... ......+.......
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~---~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~------~~~~~~~~~~~~~~- 136 (191)
T d2ngra_ 67 LRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD------PSTIEKLAKNKQKP- 136 (191)
T ss_dssp TGGGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC------HHHHHHHHTTTCCC-
T ss_pred HHHHCCCCCCEEECCCCCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC------CHHHHHHHHCCCCC-
T ss_conf 45422320102311411451---889999999999987521799736877405444432------00466654301244-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999898999999999807831232013588962149947887789900489999999
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 977 ~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
-.......+... -..++++.|||++|.||.++|..++..
T Consensus 137 -----v~~~~~~~~~~~-------------~~~~~~~e~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 137 -----ITPETAEKLARD-------------LKAVKYVECSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp -----CCHHHHHHHHHH-------------TTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHH-------------CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -----339999999997-------------299869998388896999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=2.8e-15 Score=128.02 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH---
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 902 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~--- 902 (1415)
+.|+|+|++++|||||+++|++..+......+.|.+.....+.+. .+..+.|+||||+....
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~---------------~~~~~~~~DtpG~~~~~~~~ 66 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD---------------DGRSFVMADLPGLIEGAHQG 66 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS---------------SSCEEEEEEHHHHHHHTTCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEEEEECEEEEC---------------CCCEEEEECCCCCCCCCHHH
T ss_conf 869998999987999999996899735558984475654505731---------------89689981478755676077
Q ss_pred ----HHHHHCCCCCCCEEEEEECCC--CCCHH----HHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf ----577501576663079871257--99765----799999997---21995599998236645875588802899998
Q 000570 903 ----NLRSRGSGLCDIAILVVDIMH--GLEPQ----TIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 903 ----~lr~rg~s~aDiaILVVDa~~--Gv~~Q----T~E~l~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
....+.+..++.++++++... +.... +...+..+. ..++|+||++||+|++..
T Consensus 67 ~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-------------- 132 (185)
T d1lnza2 67 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-------------- 132 (185)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHHH--------------
T ss_conf 899999999999855455201210343310233322332101000111037860231012432768--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 64499999998989999999998078312320135889621499478877899004899999999
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 970 ~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+..+...+ +..++++++||++|+||.+|+..|...+
T Consensus 133 ----------~~~~~~~~~~~----------------~~~~~v~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 133 ----------AENLEAFKEKL----------------TDDYPVFPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp ----------HHHHHHHHHHC----------------CSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHH----------------CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----------99999999973----------------2699489997888989999999999961
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-14 Score=121.75 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=103.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
+...|+|+|..++|||||+.+|+...+........+... ...+.++. ....+.+|||+|+..|..
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~~~d~~g~~~~~~ 69 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDG--------------IPARLDILDTAGQEEFGA 69 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCTTTTSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE-EEEECCCC--------------EEEEEECCCCCCCCCCCC
T ss_conf 727999999799698999999973999710034411100-25750398--------------330010121245532234
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHHHHHHH-HHH-H---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 775015766630798712579976579999-999-7---21995599998236645875588802899998644999999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll-~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
++...+..+|++|||+|..+...-.....| ..+ + ..++|+|++.||+|+... +....
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~----~~~~~-------------- 131 (173)
T d2fn4a1 70 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ----RQVPR-------------- 131 (173)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG----CCSCH--------------
T ss_pred CCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHC----CCCCH--------------
T ss_conf 521120120034564011445662022312479998725678865999984060221----13540--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989899999999980783123201358896214994788778990048999999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
..+....... .++++.|||++|.||.+++..|+..+.
T Consensus 132 -----~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 132 -----SEASAFGASH---------------HVAYFEASAKLRLNVDEAFEQLVRAVR 168 (173)
T ss_dssp -----HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf -----2456788761---------------988999838999599999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=3.5e-14 Score=119.66 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=101.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|....+.......+........+.... ....+.+|||||+..|..++.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~~~~~ 69 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND--------------EDVRLMLWDTAGQEEFDAITK 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT--------------EEEEEEEECCTTGGGTTCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC--------------CEEEEEEECCCCCCCHHHHHH
T ss_conf 999999899598999999982988864354321221101011068--------------403565421378632103245
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-HHHHHH--CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-999972--199559999823664587558880289999864499999998989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~ll~~--~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 983 (1415)
..+..+|++|||+|+.+...-+.... +..+.. .++|+|++.||+|+.... ....
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~----~v~~------------------- 126 (164)
T d1z2aa1 70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS----CIKN------------------- 126 (164)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC----SSCH-------------------
T ss_pred HHHCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCE----EEEE-------------------
T ss_conf 46306866999994232244430223433222238983277763257753444----5640-------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999807831232013588962149947887789900489999999
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 984 ~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
..+ ..+... ..++++++||++|.||.++|..|+..
T Consensus 127 ~~~-~~~~~~--------------~~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 127 EEA-EGLAKR--------------LKLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp HHH-HHHHHH--------------HTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHH-HHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 266-779987--------------59879996069996999999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.1e-13 Score=115.83 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=102.0
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+.......+........+... .....+.++||||+..+..++.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~~~d~~g~~~~~~~~~ 69 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD--------------DRLVTMQIWDTAGQERFQSLGV 69 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS--------------SCEEEEEEEEECSSGGGSCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEC--------------CCEEEEEEEECCCCCCCCCCCC
T ss_conf 99999999919899999997198988738843412310013308--------------9347777640378641112112
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-HHH-H------HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-999-7------21995599998236645875588802899998644999999
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 978 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll-~------~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~e 978 (1415)
..+..+|++|+|+|.++...-.....| ..+ . ..++|+|+|+||+|+... ....
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-----~~~~-------------- 130 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-----QVAT-------------- 130 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----CSCH--------------
T ss_pred CCCCCCCEEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC-----CHHH--------------
T ss_conf 224675589983025411332100256789998733233567778999875033312-----0148--------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989899999999980783123201358896214994788778990048999999999
Q 000570 979 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 979 f~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
......+... ..++++.|||++|.||.+++.+++..+-
T Consensus 131 -----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~i~ 168 (184)
T d1vg8a_ 131 -----KRAQAWCYSK--------------NNIPYFETSAKEAINVEQAFQTIARNAL 168 (184)
T ss_dssp -----HHHHHHHHHT--------------TSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -----9999999986--------------5976999748989699999999999998
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.57 E-value=2.9e-14 Score=120.27 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=100.0
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|....... ...+.+...... ......+.||||||+..+...+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~~-----~~~t~~~~~~~~--------------~~~~~~~~i~D~~g~~~~~~~~~ 74 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETV--------------TYKNVKFNVWDVGGQDKIRPLWR 74 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCEE-----EEEETTEEEEEE--------------EETTEEEEEEEESCCGGGHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-----CCCEEEEEEEEE--------------ECCCEEEEEECCCCCCHHHHHHH
T ss_conf 99999999987899999984488887-----432132567775--------------03524447862798610146777
Q ss_pred HCCCCCCCEEEEEECCCCCCHH-HHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0157666307987125799765-799999997----21995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~Q-T~E~l~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..+|++|+|+|++..-... ....|.... ...+|++|++||+|+...+ ..
T Consensus 75 ~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~------~~----------------- 131 (173)
T d1e0sa_ 75 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------KP----------------- 131 (173)
T ss_dssp GGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------CH-----------------
T ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------CH-----------------
T ss_conf 6512662489998415422178999999987530146665131121013561003------48-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999980783123201358896214994788778990048999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
..+...+....+. ...++++++||++|+||.+++.+|..
T Consensus 132 --~~i~~~~~~~~~~----------~~~~~~~e~SA~tg~gv~e~~~~l~~ 170 (173)
T d1e0sa_ 132 --HEIQEKLGLTRIR----------DRNWYVQPSCATSGDGLYEGLTWLTS 170 (173)
T ss_dssp --HHHHHHTTGGGCC----------SSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH----------HCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf --9999999999987----------67988998028889699999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-14 Score=120.04 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=101.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.....+.+.... ...+... .....+.||||||++.|..++.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~~--------------~~~~~l~i~D~~g~e~~~~~~~ 75 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG--------------GKQYLLGLYDTAGQEDYDRLRP 75 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESS--------------SCEEEEEEECCCCSSSSTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE-EEEEEEC--------------CCEEEEECCCCCCCCHHHHHHH
T ss_conf 999999999899999999964999876777134324-6898507--------------9558752046654200001123
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-----HHHH--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-----9997--219955999982366458755888028999986449999999
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-----NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~ll~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
..+..+|++|||+|+++ +.+.+.+ .+++ ..++|+|++.||+|+... ......+.....+.
T Consensus 76 ~~~~~a~~~ilv~d~t~---~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~------~~~~~~~~~~~~r~---- 142 (185)
T d2atxa1 76 LSYPMTDVFLICFSVVN---PASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD------PKTLARLNDMKEKP---- 142 (185)
T ss_dssp GGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC------HHHHHHHTTTTCCC----
T ss_pred HCCCCCCEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC------HHHHHHHHHCCCCC----
T ss_conf 13442111211124635---788887889999999960788870676424433221------11234430023552----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 898999999999807831232013588962149947887789900489999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
............. +.++++.|||++|.||.++|..++..
T Consensus 143 -v~~~~~~~~a~~~--------------~~~~~~E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 143 -ICVEQGQKLAKEI--------------GACCYVECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp -CCHHHHHHHHHHH--------------TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -0399999999981--------------99779994589882989999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.7e-13 Score=114.58 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=104.3
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.......+........+.... ....+.+|||||++.|..++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 73 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD--------------TTVKFEIWDTAGQERYHSLAP 73 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCC--------------EEEEEEECCCCCCHHHHHHHH
T ss_conf 999999999498999999985988854344202200000000021--------------478777415787311005479
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHH-HHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579-9999997---219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~-E~l~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..++.+|++|||+|..+...-... ..+..+. ..++|+|++.||+|+.... ..+.
T Consensus 74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~----~v~~------------------ 131 (170)
T d1r2qa_ 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR----AVDF------------------ 131 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC----CSCH------------------
T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCCH------------------
T ss_conf 986086658997325046677878887643320368984598632412432234----5617------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999807831232013588962149947887789900489999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
.....+... ..++++.|||++|.||.+++..|+..
T Consensus 132 --e~~~~~~~~--------------~~~~~~e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 132 --QEAQSYADD--------------NSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp --HHHHHHHHH--------------TTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred --HHHHHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf --777778986--------------69789996489997899999999997
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.56 E-value=7.9e-15 Score=124.58 Aligned_cols=99 Identities=38% Similarity=0.612 Sum_probs=94.0
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCE-EEEEEEEHHHHCCCCCE
Q ss_conf 46550279999998175039999999328726999999426896101012202899883101-10022100001112450
Q 000570 1045 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGI 1123 (1415)
Q Consensus 1045 ~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~r-vk~~~~~~~ev~aa~gv 1123 (1415)
..+.+++|+|++..+|+|++++++|++|+|+.||.|++++++|++.++||+||+|+||+++| .+..|.+++++.+++|+
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHHCCCCCCEECCEEECCCCE
T ss_conf 98737999999973799806999997687835999999067477998744034885245642003688097698079865
Q ss_pred EEECCCCCCCCCCCCEEEEC
Q ss_conf 56015653235799529929
Q 000570 1124 KITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1124 ~i~~~gL~~~~aG~~~~vv~ 1143 (1415)
+|.+++|+.++||+.|+|++
T Consensus 82 kI~a~gLe~v~aG~~~~VV~ 101 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLRVVT 101 (101)
T ss_dssp EEECSSCTTBCTTCEEEECS
T ss_pred EEECCCCCCCCCCCEEEEEC
T ss_conf 99819987678998889869
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.8e-14 Score=119.40 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=103.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98066871799987899999983953355557603752036721333100000001344567797999939998511457
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+|+|..++|||||+.+|+...+.....+.+......... .. .....+.|||++|+..|..+
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~-~~--------------~~~~~~~~~d~~g~~~~~~~ 69 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD--------------GKPVNLGLWDTAGQEDYDRL 69 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEE-ET--------------TEEEEEEEECCCCSGGGTTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECEEEEEE-CC--------------CCCEEEEEECCCCCCCCHHH
T ss_conf 6999999999979999999997498985446631100011000-36--------------86348986035430010010
Q ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHH-----HHHH--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75015766630798712579976579999-----9997--2199559999823664587558880289999864499999
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL-----NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 905 r~rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~ll~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ 977 (1415)
+...+..+|++|||+|+++ +.+.+.+ ..++ ..++|+|+|.||+|+... ......+......
T Consensus 70 ~~~~~~~~~~~ilv~d~~~---~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~~~~~~--- 137 (183)
T d1mh1a_ 70 RPLSYPQTDVSLICFSLVS---PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD------KDTIEKLKEKKLT--- 137 (183)
T ss_dssp GGGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC------HHHHHHHHHTTCC---
T ss_pred HHHCCCCCCEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHHHHHHHHCCCC---
T ss_conf 2212344551445203534---788998999999999973899868998402222121------0015665111356---
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99898999999999807831232013588962149947887789900489999999
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
.............. +.++++.|||++|.||.++|..++..
T Consensus 138 --~~~~~~~~~~a~~~--------------~~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 138 --PITYPQGLAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp --CCCHHHHHHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHC--------------CCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf --30368999999981--------------99669992888881999999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=8.1e-15 Score=124.47 Aligned_cols=147 Identities=23% Similarity=0.331 Sum_probs=99.0
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCC-----
Q ss_conf 0668717999878999999839533-5555760375203672133310000000134456779799993999851-----
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 900 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~----- 900 (1415)
.|+|+|++++|||||+++|++..+. .....+.|.......+. +....+.++||||+..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~Dt~G~~~~~~~~ 65 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV----------------IRGILFRIVDTAGVRSETNDL 65 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE----------------ETTEEEEEEESSCCCSSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEE----------------ECCEEEEECCCCCCCCCCCCH
T ss_conf 8999999999999999999589963553035632111047997----------------589058861666612577007
Q ss_pred ---H-HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---1-457750157666307987125799765799999997219955999982366458755888028999986449999
Q 000570 901 ---F-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 901 ---F-~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~ 976 (1415)
+ .....+.+..+|++|+|+|+.++...+....+..+ ...|+++++||+|....+ +.
T Consensus 66 ~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~------~~------------ 125 (160)
T d1xzpa2 66 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI------NE------------ 125 (160)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC------CH------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHC--CCCCCEEEEEECCCCCHH------HH------------
T ss_conf 7889999999999869999999747888625666653312--243100234301343303------46------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99989899999999980783123201358896214994788778990048999999
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 977 ~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
..+...+ +...+++++||++|+||++|+..|.+
T Consensus 126 -------~~~~~~~----------------~~~~~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 126 -------EEIKNKL----------------GTDRHMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp -------HHHHHHH----------------TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred -------HHHHHHH----------------CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -------9999984----------------79996799978899899999999976
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.6e-14 Score=119.56 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=102.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++||||||.+|.+..+.....+.+..... ..+.++. ....+.|+||+|...|..++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~d~~g~~~~~~~~ 69 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNG--------------QEYHLQLVDTAGQDEYSIFP 69 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETT--------------EEEEEEEEECCCCCTTCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCC-EEEECCC--------------EEEEEEECCCCCCCCCCCCC
T ss_conf 38999998992989999999719888544754211310-3883176--------------79876301124642222343
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHH-----HHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5015766630798712579976579999-----99972199559999823664587558880289999864499999998
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
...+..+|++|||+|+++.-.-+....| ..+...++|++++.||+|+...+ ..+.
T Consensus 70 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r----~v~~---------------- 129 (167)
T d1xtqa1 70 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----VISY---------------- 129 (167)
T ss_dssp GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGC----CSCH----------------
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC----CHHH----------------
T ss_conf 21223222110010221023345555310122100013454404505333533222----1158----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998078312320135889621499478877899004899999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+....... .++++.|||++|.||.+++..|+..+
T Consensus 130 ---~~~~~~a~~~---------------~~~~~e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 130 ---EEGKALAESW---------------NAAFLESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp ---HHHHHHHHHH---------------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ---9999999983---------------98899983699979999999999983
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.2e-14 Score=119.07 Aligned_cols=159 Identities=20% Similarity=0.151 Sum_probs=103.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|.+..+......+.+............ ....+.++||+|+..|..++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~d~~g~~~~~~~~~ 70 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG--------------KQIKLQIWDTAGQESFRSITR 70 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT--------------EEEEEEEECCTTGGGTSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEE--------------EEEEEEEECCCCCCCHHHHHH
T ss_conf 999999999399999999962999987566411011013321301--------------688787641468632246778
Q ss_pred HCCCCCCCEEEEEECCCCCCHH-HHHHHHHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0157666307987125799765-799999997---219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~Q-T~E~l~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..+..+|++|||+|+++...-. ....+..+. ..++|+|++.||+|+... +... .
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~-~----------------- 128 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR----RDVK-R----------------- 128 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG----CCSC-H-----------------
T ss_pred HHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH----HHHH-H-----------------
T ss_conf 87404678999975258488776788899999857999859999527752554----4458-9-----------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998078312320135889621499478877899004899999999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~ 1037 (1415)
.. ...+... ..++++.|||++|.||.+++..++..+-..
T Consensus 129 -~~-~~~~a~~--------------~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~ 167 (173)
T d2a5ja1 129 -EE-GEAFARE--------------HGLIFMETSAKTACNVEEAFINTAKEIYRK 167 (173)
T ss_dssp -HH-HHHHHHH--------------HTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf -98-8878987--------------598799944899979999999999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1e-13 Score=116.15 Aligned_cols=159 Identities=19% Similarity=0.116 Sum_probs=105.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 58980668717999878999999839533555576037520367213331000000013445677979999399985114
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|...|+|+|..++|||||+.+|+...+.....+.+....... +.. ......+.+||++|+..|.
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~-~~~--------------~~~~~~~~~~d~~g~~~~~ 65 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEV--------------DCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EES--------------SSCEEEEEEEEECSSCSST
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEE--------------EEEEEEECCCCCCCCCCCC
T ss_conf 9565999999899899999999970989875587502111036-886--------------2268874000246752234
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHH-HHH-H---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5775015766630798712579976579999-999-7---2199559999823664587558880289999864499999
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll-~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ 977 (1415)
.++...+..+|++|||+|+.+...-+....| ..+ + ..++|+|++.||+|+...- ....
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~~~~------------- 128 (167)
T d1c1ya_ 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER----VVGK------------- 128 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC----CSCH-------------
T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC----CCCH-------------
T ss_conf 45431122355358852104346667679999999885178897099999843755431----4652-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99898999999999807831232013588962149947887789900489999999
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 978 ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
.....+.... ..++++.|||++|+||.++|.+|+..
T Consensus 129 -------~~~~~~~~~~-------------~~~~~~e~Sak~g~gv~e~F~~l~~~ 164 (167)
T d1c1ya_ 129 -------EQGQNLARQW-------------CNCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp -------HHHHHHHHHT-------------TSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHH-------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf -------5789999984-------------89779997389991989999999997
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=7.5e-14 Score=117.17 Aligned_cols=145 Identities=23% Similarity=0.228 Sum_probs=96.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCC-CCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH--
Q ss_conf 06687179998789999998395335-555760375203672133310000000134456779799993999851145--
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 903 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~-- 903 (1415)
.|+|+|++++|||||+++|++.++.. ....|.+.......+. +....+.++||||......
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH----------------IDGMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE----------------ETTEEEEEEECCCCSCCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEE----------------CCCCEEEECCCCCCCCCCCCC
T ss_conf 9999899999899999999688866751246642204765320----------------268235413653212246520
Q ss_pred ------HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH-HH--CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ------775015766630798712579976579999999-72--199559999823664587558880289999864499
Q 000570 904 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 904 ------lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll-~~--~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
....++..+|++|+++|+...........+... .. .++|+|+|+||+|+... ..
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~-----~~------------ 129 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE-----TL------------ 129 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC-----CC------------
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH-----HH------------
T ss_conf 2478999999987413320110256542034555444555420141010204654443355-----88------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9999989899999999980783123201358896214994788778990048999999
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 975 i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
.+. . -...+++++||++|.||.+|+.+|..
T Consensus 130 -------------------~~~-~--------~~~~~~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 130 -------------------GMS-E--------VNGHALIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp -------------------EEE-E--------ETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -------------------HHH-H--------HCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -------------------798-7--------27996799978889899999999981
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9.3e-14 Score=116.49 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=103.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.......+........+.... ....+.+|||+|+..|..++.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 70 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG--------------KRVNLAIWDTAGQERFHALGP 70 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS--------------CEEEEEEEECCCC-------C
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCC--------------CCCEEEEECCCCCCEECCCCH
T ss_conf 999999999398999999982998864454200100001101378--------------531254402688604510350
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-H---HHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-9---9997219955999982366458755888028999986449999999898
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-L---NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 982 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l---~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 982 (1415)
..++.+|++|||+|+++.-.-+.... + ........|+|++.||+|+... +..+.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~----~~v~~------------------ 128 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE----RHVSI------------------ 128 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG----CCSCH------------------
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCC----CCCCH------------------
T ss_conf 00038966699980995567775543322001111233212452321020101----23225------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998078312320135889621499478877899004899999999
Q 000570 983 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 983 i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+....... .++++.|||++|.||.+++..|+..+
T Consensus 129 -~e~~~~a~~~---------------~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 129 -QEAESYAESV---------------GAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp -HHHHHHHHHT---------------TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHC---------------CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -8999999985---------------98399970699969899999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=4.7e-13 Score=111.17 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH--
Q ss_conf 980668717999878999999839533555576037520367213331000000013445677979999399985114--
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 902 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~-- 902 (1415)
.|.|+|+|++|+|||||+++|++..+. +++|.......+ .+.+..+.|+|||||..+.
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~----------------~~~~~~~~l~D~~g~~~~~~~ 62 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAA----------------DYDGSGVTLVDFPGHVKLRYK 62 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEET----------------TGGGSSCEEEECCCCGGGTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC----CEEEECCEEEEE----------------EECCEEEEEEECCCCCCHHHH
T ss_conf 889999999998899999999679999----827762428999----------------858848999852555321367
Q ss_pred --HHHHHCCCCCCCEEEEEECCCCCC--HHH-------HHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf --577501576663079871257997--657-------9999999721995599998236645
Q 000570 903 --NLRSRGSGLCDIAILVVDIMHGLE--PQT-------IESLNLLKMRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 903 --~lr~rg~s~aDiaILVVDa~~Gv~--~QT-------~E~l~ll~~~~vP~IVviNKiD~~~ 954 (1415)
......+..++.+++++|+..... ..+ ...+..+...++|+|+++||+|++.
T Consensus 63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~ 125 (209)
T d1nrjb_ 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125 (209)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 999998876412456248997346233999999999999999998743698699998003455
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-13 Score=115.33 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=102.2
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.......+......... ... ....+.+||+||+..|..++.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~l~~~d~~~~~~~~~~~~ 69 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDG--------------ETCLLDILDTAGQEEYSAMRD 69 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEE-ETT--------------EEEEEEEEEECCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEE-EEC--------------EEEEEEEEECCCCCCCCCCHH
T ss_conf 99999979989999999998098898657741001011023-101--------------000233341157532233216
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-9997----21995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..++++|+|+|+++...-+....| ..+. ..++|+|++.||+|+... ....
T Consensus 70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----~~~~----------------- 127 (166)
T d1ctqa_ 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVES----------------- 127 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC-----CSCH-----------------
T ss_pred HHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-----CCCH-----------------
T ss_conf 653102333301112433507788899999998637899709999614554544-----4457-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999998078312320135889621499478877899004899999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
.. ...+... ..++++.|||++|+||.+++..++..+
T Consensus 128 --~~-~~~~~~~--------------~~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 128 --RQ-AQDLARS--------------YGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp --HH-HHHHHHH--------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HH-HHHHHHH--------------HCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf --78-8999998--------------098499985899948999999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=2e-13 Score=113.90 Aligned_cols=111 Identities=25% Similarity=0.280 Sum_probs=75.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH-HHHH
Q ss_conf 668717999878999999839533555576037520367213331000000013445677979999399985114-5775
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-NLRS 906 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~-~lr~ 906 (1415)
|+|+|++++|||||+++|++..+.... .+++.+.+...+.. .....+.++|||||..|. .++.
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~---------------~~~~~~~~~d~~g~~~~~~~~~~ 66 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNN---------------NRGNSLTLIDLPGHESLRFQLLD 66 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSS---------------TTCCEEEEEECCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC-CCEEEEEEEEEEEE---------------EEEEEEEEEECCCCCCCCCHHHH
T ss_conf 999999998989999999809987642-87027899999964---------------54354444202112343301566
Q ss_pred HCCCCCCCEEEEEECCCCCCH--HHHHHH-HHHH-----HCCCCEEEEEEECCCCC
Q ss_conf 015766630798712579976--579999-9997-----21995599998236645
Q 000570 907 RGSGLCDIAILVVDIMHGLEP--QTIESL-NLLK-----MRNTEFIVALNKVDRLY 954 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~--QT~E~l-~ll~-----~~~vP~IVviNKiD~~~ 954 (1415)
..+..++.+|+|||+.+.... ...+.+ .++. ..++|++|++||+|++.
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 65543055634777666534599999999999976887515894799998854678
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.52 E-value=1.7e-13 Score=114.48 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=101.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|....+.....+.+..... ..+..+ .....+.||||||+..|..++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~--------------~~~~~l~i~d~~g~~~~~~~~~ 70 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD--------------GEEVQIDILDTAGQEDYAAIRD 70 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET--------------TEEEEEEEEECCC---CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCC--------------CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9999998995889999999729998654775343101-111345--------------4332222334456531234543
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-HHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-9997----21995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..+|++|||+|+.+...-.....| ..+. ..++|++++.||+|+...+ ....
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~----~v~~----------------- 129 (168)
T d1u8za_ 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR----QVSV----------------- 129 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC----CSCH-----------------
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCH-----------------
T ss_conf 1142331668985254113455589999999996188998189995364212233----5307-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999998078312320135889621499478877899004899999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+....... .+++++|||++|.||.+++.+|++.+
T Consensus 130 --~~~~~~~~~~---------------~~~~~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 130 --EEAKNRADQW---------------NVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp --HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf --8899999976---------------97699986899929999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.1e-13 Score=112.56 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=101.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++||||||.+|....+.....+...... ...+..+. ....+.+|||||+..|..++.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~~~d~~g~~~~~~~~~ 71 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDD--------------RAARLDILDTAGQEEFGAMRE 71 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE-EEEEEETT--------------EEEEEEEEECC----CCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE-EEEEEECC--------------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 899999999799999999973998854576645200-00010012--------------121112211256532254544
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-----HHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-----999721995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-----~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..+|++|||+|..+.-.-.....| ........|+||+.||+|+.... ....
T Consensus 72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~----~v~~----------------- 130 (171)
T d2erya1 72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR----QVTQ----------------- 130 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC----SSCH-----------------
T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHC----CCHH-----------------
T ss_conf 3342451689960454344314678876888763035788779998302066531----3227-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999980783123201358896214994788778990048999999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
..+....... .++++.|||++|.||.+++..|++.+.
T Consensus 131 --~~~~~~~~~~---------------~~~~~e~Sak~~~~i~e~f~~l~~~i~ 167 (171)
T d2erya1 131 --EEGQQLARQL---------------KVTYMEASAKIRMNVDQAFHELVRVIR 167 (171)
T ss_dssp --HHHHHHHHHT---------------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --8889999982---------------987999738999399999999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1e-12 Score=108.55 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=102.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+|+...+.......+...+....+... .....+.||||+|++.|..++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~--------------~~~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN--------------EHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET--------------TEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC--------------CCCCCCCCCCCCCCHHHHHHH
T ss_conf 999999999919899999997299986546530101202322111--------------123223455568716678888
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHH-HH---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50157666307987125799765799999-99---721995599998236645875588802899998644999999989
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~-ll---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
...+..+|++|||+|..+...-.....+. .+ .....|++++.||+|+........ -..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~-v~~----------------- 131 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERK-VAR----------------- 131 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCC-SCH-----------------
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHH-HHH-----------------
T ss_conf 88873465079998078444303455202110133333320232100234101100135-469-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999980783123201358896214994788778990048999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
..+....... .++++.+||++|.||.++|..|+.
T Consensus 132 --~~~~~~~~~~---------------~~~~~e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 132 --EEGEKLAEEK---------------GLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp --HHHHHHHHHH---------------TCEEEECCTTTCTTHHHHHHHHHT
T ss_pred --HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf --9999999986---------------998999348999589999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-13 Score=113.84 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=99.3
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|++..+.....+.+ +..+.....+ ......+.+|||+|...|..++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~----~~~~~~~~~~-----------~~~~~~l~~~d~~g~~~~~~~~~ 68 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV----EDTYRQVISC-----------DKSICTLQITDTTGSHQFPAMQR 68 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS----CEEEEEEEEE-----------TTEEEEEEEEECCSCSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCE----EECCCCCEEE-----------CCCCCEECCCCCCCCCCCCCCCC
T ss_conf 89999989979899999997099987637613----3101121000-----------22000001112356521110124
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH----HHHH---H--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999----9999---7--2199559999823664587558880289999864499999
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES----LNLL---K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 977 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~----l~ll---~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ 977 (1415)
..+..+|++|||+|+++ +.+... +..+ . ..++|+|+|.||+|+..... ...
T Consensus 69 ~~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----v~~------------- 128 (171)
T d2erxa1 69 LSISKGHAFILVYSITS---RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQS------------- 128 (171)
T ss_dssp HHHHHCSEEEEEEETTC---HHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCH-------------
T ss_pred CCCCCEEEEEEEEECCC---CCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC----CCH-------------
T ss_conf 34332038999720222---1100102102343333404678986899960665322345----548-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 998989999999998078312320135889621499478877899004899999999
Q 000570 978 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 978 ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
..+ ..+... ..++++.|||++|.||.+++..|+.+.
T Consensus 129 ------~e~-~~~~~~--------------~~~~~~e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 129 ------SEA-EALART--------------WKCAFMETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ------HHH-HHHHHH--------------HTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ------HHH-HHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------999-999998--------------498699983899939999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-14 Score=121.34 Aligned_cols=153 Identities=19% Similarity=0.189 Sum_probs=100.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.....+ .++..+.... + ........+.||||||+..|..++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~----Ti~~~~~~~~--------~--~~~~~~~~l~i~D~~g~~~~~~~~~ 70 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVA----TLGVEVHPLV--------F--HTNRGPIKFNVWDTAGQEKFGGLRD 70 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-----CCEEE----ETTEEEEEEE--------E--CBTTCCEEEEEEECTTHHHHSSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCC----CEECCCCCCC--------C--CCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 999999999088999999984988854465----3001100011--------2--2223332221112346533000020
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-HHHH-H-HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-9999-7-2199559999823664587558880289999864499999998989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL-K-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 983 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~ll-~-~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i 983 (1415)
..++.+|++|||+|+++.-.-+.... +..+ + ..++|+|++.||+|+...- ...
T Consensus 71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~-~~~----------------------- 126 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK-VKA----------------------- 126 (170)
T ss_dssp GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSC-CTT-----------------------
T ss_pred HHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH-HHH-----------------------
T ss_conf 01133211000113221101002677788876404797235344655455513-336-----------------------
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999807831232013588962149947887789900489999999
Q 000570 984 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 984 ~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
... .+.. ...++++.|||++|.||.+++.+|+..
T Consensus 127 -~~~-~~~~--------------~~~~~~~e~Sak~~~~v~e~f~~l~~~ 160 (170)
T d1i2ma_ 127 -KSI-VFHR--------------KKNLQYYDISAKSNYNFEKPFLWLARK 160 (170)
T ss_dssp -TSH-HHHS--------------SCSSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred -HHH-HHHH--------------HCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf -888-9998--------------759879999689897999999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.8e-14 Score=116.67 Aligned_cols=155 Identities=20% Similarity=0.173 Sum_probs=101.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 58980668717999878999999839533555576037520367213331000000013445677979999399985114
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
+|...|+|+|..++|||||+.+|+...+.......+.... ........ ....+.+|||+|+..|.
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~~~d~~g~~~~~ 65 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDS--------------SPSVLEILDTAGTEQFA 65 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCTTCCH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE-EEEEECCC--------------CEEEECCCCCCCCCCCC
T ss_conf 9565999999899399999999971999876688611355-33540476--------------15762134577751234
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHH----HHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57750157666307987125799765799999----997----2199559999823664587558880289999864499
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN----LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~----ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
.++...+..+|++|||+|+++ +.+...+. .+. ..++|+|+|.||+|+... +....
T Consensus 66 ~~~~~~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~----~~~~~---------- 128 (167)
T d1kaoa_ 66 SMRDLYIKNGQGFILVYSLVN---QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE----REVSS---------- 128 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTC---HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG----CCSCH----------
T ss_pred CCHHHHHHCCCCEEEEEEECC---HHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHC----CCCHH----------
T ss_conf 442777615351156642135---6665400000466655304899988999972250320----23269----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999898999999999807831232013588962149947887789900489999999
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 975 i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
.......... .+++++|||++|.||.+++..++..
T Consensus 129 ---------~~~~~~~~~~---------------~~~~~e~Sak~g~~i~e~f~~i~~~ 163 (167)
T d1kaoa_ 129 ---------SEGRALAEEW---------------GCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp ---------HHHHHHHHHH---------------TSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHC---------------CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf ---------9999999974---------------9859998889995899999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.2e-12 Score=108.11 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=100.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66871799987899999983953355557603752036721333100000001344567797999939998511457750
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 907 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~r 907 (1415)
|+|+|..++|||||+.+|.+..+.......+........+..... ...+.++||+|...+..++..
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~~~~~~~~ 74 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH--------------FVTMQIWDTAGQERFRSLRTP 74 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE--------------EEEEEEEECCCCGGGHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCC--------------EEEEEEECCCCCCEEHHHHHH
T ss_conf 999999997999999999849788765663232144455542584--------------015765203686000345566
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHH-HHH----H---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 15766630798712579976579999-999----7---219955999982366458755888028999986449999999
Q 000570 908 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 908 g~s~aDiaILVVDa~~Gv~~QT~E~l-~ll----~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
.+..+|++|+|+|.++...-+....| ..+ . ..++|+|+|.||+|+.. ...+.
T Consensus 75 ~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-----~~v~~--------------- 134 (174)
T d1wmsa_ 75 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-----RQVST--------------- 134 (174)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-----CSSCH---------------
T ss_pred HHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----CCCCH---------------
T ss_conf 6506615789986402466422466899999985102577720999413240543-----22769---------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 898999999999807831232013588962149947887789900489999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
..+....... ..+++++|||++|.||.+++..++..
T Consensus 135 ----~~~~~~~~~~--------------~~~~~~e~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 135 ----EEAQAWCRDN--------------GDYPYFETSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp ----HHHHHHHHHT--------------TCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHC--------------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf ----9999999974--------------99759997689994999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=5.9e-13 Score=110.45 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=100.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCC-CCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCC---
Q ss_conf 35898066871799987899999983953355-55760375203672133310000000134456779799993999---
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--- 897 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-eagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPG--- 897 (1415)
.-+.|.|+|+|++|+|||||+++|++...... ...+.+............ ..+...++++
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 76 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG----------------KRLVDLPGYGYAE 76 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT----------------EEEEECCCCC---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCEECCCC----------------CCEEEEECCCCCC
T ss_conf 766978999889999899999998589854754566650231110111465----------------4203420012211
Q ss_pred --------CCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf --------851145775015766630798712579976579999999721995599998236645875588802899998
Q 000570 898 --------HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 898 --------He~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
+..+..........++.++++++...+...+....+..+.....++++++||+|++. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~------~~~~----- 145 (188)
T d1puia_ 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA------SGAR----- 145 (188)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------HHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCC------HHHH-----
T ss_conf 02445444445556556542003589984012233126777888876403322201113331158------8889-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 64499999998989999999998078312320135889621499478877899004899999999
Q 000570 970 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 970 ~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+..+...+.. +++.+++|+|||++|.||++|+..|..++
T Consensus 146 ----------~~~~~~~~~~l~~-------------~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 146 ----------KAQLNMVREAVLA-------------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ----------HHHHHHHHHHHGG-------------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-------------HCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----------9999999999986-------------08998189996799988999999999970
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=4.4e-13 Score=111.36 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=102.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCC-----CCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCC
Q ss_conf 980668717999878999999839533555-----576037520367213331000000013445677979999399985
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----agGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe 899 (1415)
+..|+|+|.+|+|||||+++|++....... ..+.|+++..+.. ...+.+.||||||..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-----------------~~~~~~~l~DtPG~~ 118 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-----------------PNIPNVVFWDLPGIG 118 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-----------------SSCTTEEEEECCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEC-----------------CCCCEEEEEECCCCC
T ss_conf 717999899999789999999588867775678999887044553110-----------------689707998379854
Q ss_pred CHH-----HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC---CCCCCCHHHHHHHHHH
Q ss_conf 114-----57750157666307987125799765799999997219955999982366458---7558880289999864
Q 000570 900 SFT-----NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG---WKTCRNAPIVKAIKQQ 971 (1415)
Q Consensus 900 ~F~-----~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~---w~~~~~a~~~~~l~~q 971 (1415)
... .+.......+|++|+|++ ..+..+....+..+...+.|+++|+||+|+... |......+....+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~-- 194 (400)
T d1tq4a_ 119 STNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ-- 194 (400)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHH--
T ss_conf 33344999998743322659999658--88878899999999976998799970863210135432201122788999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 499999998989999999998078312320135889621499478877--8990048999999999
Q 000570 972 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 972 ~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~t--GeGI~eLl~~l~~l~~ 1035 (1415)
.-...+...|...++. ..+++++|+.. ..|++.|...+...++
T Consensus 195 ---------~ir~~~~~~l~~~~~~------------~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 195 ---------DIRLNCVNTFRENGIA------------EPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp ---------HHHHHHHHHHHHTTCS------------SCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred ---------HHHHHHHHHHHHCCCC------------CCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf ---------9999999999874899------------89779733776451589999999999839
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.5e-13 Score=112.17 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=97.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98066871799987899999983953355557603752036721333100000001344567797999939998511457
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
+.+|+|+|++|+|||||+++|++.++......+.|.......... .....+.++|+||...+...
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 69 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT---------------EGAYQAIYVDTPGLHMEEKR 69 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE---------------ETTEEEEEESSSSCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEE---------------CCCCEEEEECCCCCEECCHH
T ss_conf 619999979999899999999589863432688713788875550---------------58731476048873011023
Q ss_pred ---------HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---------75015766630798712579976579999999721995599998236645875588802899998644999
Q 000570 905 ---------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 905 ---------r~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i 975 (1415)
.......+++++|++|+. +...+....+..+.....|+|+++||+|.+.. ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~------~~------------ 130 (179)
T d1egaa1 70 AINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKVDNVQE------KA------------ 130 (179)
T ss_dssp HHHHHHTCCTTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHSSSSCEEEEEESTTTCCC------HH------------
T ss_pred HHHHHHHHCCCCCHHHCCEEEEEEECC-CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCH------HH------------
T ss_conf 444443210221021144467987457-66226789987754135751555543441210------24------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 99998989999999998078312320135889621499478877899004899999999
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 976 ~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
.+......+... ....+++|+||++|+||.+|+..|..++
T Consensus 131 ------~~~~~~~~~~~~-------------~~~~~~~~vSA~~g~gi~~L~~~i~~~l 170 (179)
T d1egaa1 131 ------DLLPHLQFLASQ-------------MNFLDIVPISAETGLNVDTIAAIVRKHL 170 (179)
T ss_dssp ------HHHHHHHHHHTT-------------SCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHH-------------CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ------566676666642-------------3899789982768989999999999748
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=4.3e-13 Score=111.48 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=101.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+++|..++|||||+.++.+..+.......+..... ..+... .....+.+|||+|+..|..++
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~~~i~d~~g~~~~~~~~ 69 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEID--------------NQWAILDVLDTAGQEEFSAMR 69 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE-EEEEET--------------TEEEEEEEEECCSCGGGCSSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCC-CCCCCC--------------CCCCCCCCCCCCCCCCCCCCH
T ss_conf 79999998995989999999709888545763120101-111235--------------532201220124642322112
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHH-HH----HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 501576663079871257997657999-99----9972199559999823664587558880289999864499999998
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIES-LN----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~E~-l~----ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
...++.+|++|||+|+++.-.-..... +. .....++|+|++.||+|+.... ....
T Consensus 70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~----~v~~---------------- 129 (169)
T d1x1ra1 70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR----KVTR---------------- 129 (169)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC----CSCH----------------
T ss_pred HHHHHHCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHC----EEEH----------------
T ss_conf 44530033899832101002343220246778763145676389984365466623----0003----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHH
Q ss_conf 98999999999807831232013588962149947887789-9004899999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~eLl~~l~~l~ 1034 (1415)
..+....... .++++.+||++|. ||.+++..|+..+
T Consensus 130 ---e~~~~~~~~~---------------~~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 130 ---DQGKEMATKY---------------NIPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp ---HHHHHHHHHH---------------TCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHC---------------CCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf ---1677899975---------------987999907988839999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.49 E-value=8.4e-13 Score=109.27 Aligned_cols=154 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.... +.......+ .......+.++|++|+..+.....
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~ 77 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNEVVHTS-------------PTIGSNVEE------IVINNTRFLMWDIGGQESLRSSWN 77 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSCEEEE-------------CCSCSSCEE------EEETTEEEEEEECCC----CGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC-------------CCCCEEEEE------EEECCEEEEEECCCCCCCCCCCHH
T ss_conf 9999999998989999999668887302-------------433335799------840536999951553101221111
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH-HHHH----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999-9999----721995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~-l~ll----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..++.+++|+|..+......... +..+ ...++|+++++||+|+... ..
T Consensus 78 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~----------------- 133 (177)
T d1zj6a1 78 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC-------MT----------------- 133 (177)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-------CC-----------------
T ss_pred HHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-------CC-----------------
T ss_conf 332154156652144564214554200134432035553379999970563121-------76-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999998078312320135889621499478877899004899999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+...+....+ ....++++++||+||+||.+++.+|...+
T Consensus 134 -~~~i~~~~~~~~~----------~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 134 -VAEISQFLKLTSI----------KDHQWHIQACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp -HHHHHHHHTGGGC----------CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH----------HHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -9999999999766----------74698899996988979999999999973
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.5e-12 Score=102.08 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=93.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|+.++|||||+.++++..+......... .. ...+..+ .....+.||||+|+..+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~-~~-~~~i~v~--------------~~~~~l~i~Dt~g~~~~~~-- 67 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESE-QY-KKEMLVD--------------GQTHLVLIREEAGAPDAKF-- 67 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCE-EE-EEEEEET--------------TEEEEEEEEECSSCCCHHH--
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCE-EE-EEEEECC--------------CEEEEEEEEECCCCCCCCC--
T ss_conf 7999999899789999999971978776775540-47-7874048--------------5689999850453210013--
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHH-------H---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5015766630798712579976579999999-------7---21995599998236645875588802899998644999
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNLL-------K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 975 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll-------~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i 975 (1415)
++.+|++|||+|+++ ..+.+.+..+ + ..++|+++++||.|+...- ...+.
T Consensus 68 ---~~~ad~~ilVfd~~~---~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~----~~~v~---------- 127 (175)
T d2bmja1 68 ---SGWADAVIFVFSLED---ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS----PRVVG---------- 127 (175)
T ss_dssp ---HHHCSEEEEEEETTC---HHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS----CCCSC----------
T ss_pred ---CCCCCEEEEEEECCC---CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH----HCCHH----------
T ss_conf ---556653688861012---1124415788888999864036786178875304740443----02105----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99998989999999998078312320135889621499478877899004899999999999
Q 000570 976 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1037 (1415)
Q Consensus 976 ~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~ 1037 (1415)
......+... ...++++.|||.+|.||.++|..++..+...
T Consensus 128 --------~~~~~~~~~~-------------~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 168 (175)
T d2bmja1 128 --------DARARALCAD-------------MKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168 (175)
T ss_dssp --------HHHHHHHHHT-------------STTEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHH-------------HCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf --------9999999998-------------1997499907899969999999999999986
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.3e-12 Score=107.90 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=98.0
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+++...+.....+.+...+...... . .....+.||||||+..|. ++.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~-~--------------~~~~~l~i~D~~g~~~~~-~~~ 67 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-D--------------DEVVSMEILDTAGQEDTI-QRE 67 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-T--------------TEEEEEEEEECCCCCCCH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCC-C--------------CCCEEEEEEECCCCCCCC-CCH
T ss_conf 999999899789999999973989876377310011121124-6--------------632178885111222234-431
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHH-HHH----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579999-999----721995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l-~ll----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
..+..+|++|||+|+++.........+ .+. ...++|+|++.||+|+.... ..+.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r----~V~~----------------- 126 (168)
T d2atva1 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR----QVST----------------- 126 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC----CSCH-----------------
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHC----CCCH-----------------
T ss_conf 5433641000102568865324455400112111134675226651410255532----5769-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHH
Q ss_conf 89999999998078312320135889621499478877899-004899999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQWT 1034 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeG-I~eLl~~l~~l~ 1034 (1415)
..+....... .++++.+||++|.| |.++|..|+..+
T Consensus 127 --~e~~~~a~~~---------------~~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 127 --EEGEKLATEL---------------ACAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp --HHHHHHHHHH---------------TSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH---------------CCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf --9999999980---------------995999755418819999999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=7.4e-13 Score=109.69 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+.+|+...+.....+.+........ ... .....+.||||+|++.|..++.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~-~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 68 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EID--------------TQRIELSLWDTSGSPYYDNVRP 68 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEE-ECS--------------SCEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCC-CCC--------------CEEEEECCCCCCCCCCCCCCCC
T ss_conf 9999999995989999999729999865872010112210-256--------------4477621333221111233554
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHH----H-HHHH--HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999----9-9997--219955999982366458755888028999986449999999
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIES----L-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~----l-~ll~--~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
..+..+|++|||+|+++. .+.+. | ..+. ..++|+|++.||+|+...+ .....+..+...
T Consensus 69 ~~~~~~~~~ilv~d~~~~---~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~------~~~~~~~~~~~~----- 134 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV------STLVELSNHRQT----- 134 (179)
T ss_dssp GGCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH------HHHHHHHTTTCC-----
T ss_pred CHHHHHHHHHEEEECCCC---CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC------HHHHHHHHHHCC-----
T ss_conf 100012344302303467---779999887888874048851699987403443342------146777665417-----
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHH
Q ss_conf 898999999999807831232013588962149947887789-9004899999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1034 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGe-GI~eLl~~l~~l~ 1034 (1415)
.............. +.++++.|||++|. ||.++|..+...+
T Consensus 135 ~V~~~e~~~~a~~~--------------~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 135 PVSYDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp CCCHHHHHHHHHHH--------------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--------------CCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 56199999999983--------------9975999707989849999999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.45 E-value=4.7e-12 Score=103.61 Aligned_cols=155 Identities=22% Similarity=0.160 Sum_probs=103.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|+|..++|||||+.+|.+..+.... .|.......+.. ....+.++|+||+..+....
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~~---~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 66 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTY----------------KNLKFQVWDLGGLTSIRPYW 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCC---CCSSEEEEEEEE----------------TTEEEEEEEECCCGGGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCEEEEEECC----------------CCEEEEEEECCCCCCCCCCC
T ss_conf 29999999998999999999679876034---132135654036----------------86688875045411122200
Q ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHH--H---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 501576663079871257997657999999--9---72199559999823664587558880289999864499999998
Q 000570 906 SRGSGLCDIAILVVDIMHGLEPQTIESLNL--L---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 980 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~~QT~E~l~l--l---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~ 980 (1415)
...+..++.+++++|+...........+.. + .....|++++.||+|+.... .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~------~----------------- 123 (169)
T d1upta_ 67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM------T----------------- 123 (169)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------C-----------------
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCC------C-----------------
T ss_conf 12321013321134443010001000011466665303554179998605541101------1-----------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999998078312320135889621499478877899004899999999
Q 000570 981 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 981 ~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
...+...+..... ....+++++|||++|+||.+++.+|...+
T Consensus 124 --~~~i~~~~~~~~~----------~~~~~~~~~~SA~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 124 --SSEMANSLGLPAL----------KDRKWQIFKTSATKGTGLDEAMEWLVETL 165 (169)
T ss_dssp --HHHHHHHHTGGGC----------TTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH----------HCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --7899999877887----------63898899975888979899999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.45 E-value=5.1e-13 Score=110.92 Aligned_cols=152 Identities=24% Similarity=0.243 Sum_probs=98.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+|+|..++|||||+++|.+..+.... ......... .......+.++|+||...+..++.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~--------------~~~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVET--------------VEYKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCC-----CCSSCCEEE--------------EECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC-----CCEEEEEEE--------------EEEEEEEEEEECCCCCCCCHHHHH
T ss_conf 8999999998989999999659888622-----111467999--------------730169998862788400015666
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHH-HHH-HHHH---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015766630798712579976579-999-9997---21995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~-E~l-~ll~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
+....++++|+|+|..+-...+.. ..+ .++. ...+|++++.||+|+...+ ..
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~------~~----------------- 119 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------NA----------------- 119 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------CH-----------------
T ss_pred HHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC------CH-----------------
T ss_conf 6420532689998742737777777777888776404575499975102443444------28-----------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999980783123201358896214994788778990048999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
..+.... ++... ....++++++||+||+||.+++++|..
T Consensus 120 --~~i~~~~---~~~~~-------~~~~~~~~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 120 --AEITDKL---GLHSL-------RHRNWYIQATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp --HHHHHHT---TGGGC-------SSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred --HHHHHHH---HHHHH-------HHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf --9999999---99988-------637988999679889798999999995
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=1.1e-12 Score=108.47 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=104.3
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 06687179998789999998395335555760375203672133310000000134456779799993999851145775
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 906 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr~ 906 (1415)
.|+++|..++|||||+++|++..+.. ++..++.+.... .+....+.++||+|+..|..++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEEL--------------AIGNIKFTTFDLGGHIQARRLWK 62 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEE--------------CCTTCCEEEEECCCSGGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCE-----EECEEEEEEEEE--------------CCCCEEEEEEEECCCHHHHHHHH
T ss_conf 89999999999999999995899871-----502462768995--------------05875678874032113466676
Q ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHH-H----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01576663079871257997657999999-9----721995599998236645875588802899998644999999989
Q 000570 907 RGSGLCDIAILVVDIMHGLEPQTIESLNL-L----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 907 rg~s~aDiaILVVDa~~Gv~~QT~E~l~l-l----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
.....++.+++++|..+-........+.. + ...+.|++++.||+|+.... .
T Consensus 63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------~------------------ 118 (166)
T d2qtvb1 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------S------------------ 118 (166)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------C------------------
T ss_pred HHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC------C------------------
T ss_conf 5400004642300033402103456787763200103785499984133641237------8------------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 899999999980783123201358896214994788778990048999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
...+...+.........+. .....+++++|||+||+||+++|+||.+
T Consensus 119 -~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 119 -EAELRSALGLLNTTGSQRI---EGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp -HHHHHHHHTCSSCCC---C---CSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf -9999998633234688864---2447978999337889899999999848
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.8e-12 Score=105.30 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=91.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCC-CCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECC---CCCCHH
Q ss_conf 06687179998789999998395335555-76037520367213331000000013445677979999399---985114
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP---GHESFT 902 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTP---GHe~F~ 902 (1415)
.|+|+|..++|||||+.+|.+........ ..+........+..+. ....+.+||+| |++.|
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~~g~e~~- 69 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG--------------ESATIILLDMWENKGENEW- 69 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT--------------EEEEEEEECCTTTTHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCC--------------CEEEEEEECCCCCCCCCCC-
T ss_conf 9999998992999999999728677566566255310000000488--------------5155556214431222212-
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHH----HHHH----CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57750157666307987125799765799999----9972----199559999823664587558880289999864499
Q 000570 903 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN----LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 974 (1415)
Q Consensus 903 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~----ll~~----~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~ 974 (1415)
++...++.+|++|||+|+++ +.+.+.+. .+.. .++|+|||.||+|+... +....
T Consensus 70 -~~~~~~~~~~~~ilvfd~t~---~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~v~~---------- 131 (172)
T d2g3ya1 70 -LHDHCMQVGDAYLIVYSITD---RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC----REVSV---------- 131 (172)
T ss_dssp -HHHCCCCCCSEEEEEEETTC---HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG----CCSCH----------
T ss_pred -CCCCCCCCCCEEEEEECCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC----CCCCH----------
T ss_conf -23333334420334311220---0012212355555430024677129998404453333----45427----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999989899999999980783123201358896214994788778990048999999999
Q 000570 975 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1035 (1415)
Q Consensus 975 i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~ 1035 (1415)
... ..+... ..++++.|||++|.||.+++..|+..+.
T Consensus 132 ---------~~~-~~~a~~--------------~~~~~~e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 132 ---------SEG-RACAVV--------------FDCKFIETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp ---------HHH-HHHHHH--------------HTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------HHH-HHHHHH--------------CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ---------788-999987--------------6985999828999699999999999999
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.37 E-value=8.4e-13 Score=109.25 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=75.0
Q ss_pred EEEECCCCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 56651562016-899859989986223522998762-3991433478821002365523333798189998159970001
Q 000570 1287 VLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQ 1364 (1415)
Q Consensus 1287 ~l~i~~~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~ 1364 (1415)
...|+. +|. ++...||||+|++|.|++++.++| |++.+||.|.|.||+|++++|.++++|+||||.+.+|+
T Consensus 8 ~A~V~~--vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l~~~~----- 80 (99)
T d1d1na_ 8 QAEVRQ--TFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN----- 80 (99)
T ss_dssp EEEECC--CCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCS-----
T ss_pred EEEEEE--EEECCCCCEEEEEEEEECEECCCCCEEEECCCEEEEEEEEEEECCCCCCCCEECCCEEEEEEECCCC-----
T ss_conf 999989--9994899379899998184805884278239879998588650143310488557828889964856-----
Q ss_pred CCCCCCCCCCCEEEECCCH
Q ss_conf 1114213679849972644
Q 000570 1365 KMFGRHFDIEDELVSHISR 1383 (1415)
Q Consensus 1365 ~~~gr~f~~~d~l~s~i~r 1383 (1415)
.|.++|+|.++...
T Consensus 81 -----d~~~GD~ie~y~~~ 94 (99)
T d1d1na_ 81 -----DIKEGDVIEAYVMQ 94 (99)
T ss_dssp -----SCSSCSEEEEECCS
T ss_pred -----CCCCCCEEEEEEEE
T ss_conf -----78889999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.36 E-value=6.7e-12 Score=102.44 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=102.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 98066871799987899999983953355557603752036721333100000001344567797999939998511457
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
...|+++|..++|||||+++|.+..+.... .|.......+. +....+.++|++|+..+...
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~---~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 73 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELT----------------IAGMTFTTFDLGGHIQARRV 73 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEE----------------ETTEEEEEEEECC----CCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEE---CCCCCCEEEEE----------------ECCCCCCCCCCCCHHHHHHH
T ss_conf 778999999998989999999678875224---02334325897----------------43621122344400456567
Q ss_pred HHHCCCCCCCEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7501576663079871257997-65799999997----219955999982366458755888028999986449999999
Q 000570 905 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 979 (1415)
Q Consensus 905 r~rg~s~aDiaILVVDa~~Gv~-~QT~E~l~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef 979 (1415)
+......++.+++|+|+.+... .+....+..+. ..++|+++++||.|+.... +
T Consensus 74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~------~---------------- 131 (186)
T d1f6ba_ 74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------S---------------- 131 (186)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------C----------------
T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC------C----------------
T ss_conf 765402322011245315742037789999875101235787469987324751218------8----------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 898999999999807831232013--588962149947887789900489999999
Q 000570 980 NMRLVQIVTQLKEQGMNTELYYKN--KDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 980 ~~~i~~Ii~~L~e~gl~~e~~~~~--~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
...+...+............. ......+++++|||++|+||.++++||.+.
T Consensus 132 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 132 ---EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp ---HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf ---99999997204421333234677751378779998588898999999999984
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.4e-11 Score=100.15 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=93.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHH-
Q ss_conf 8066871799987899999983953355557603752036721333100000001344567797999939998511457-
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 904 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~l- 904 (1415)
..|+|+|..++|||||+.+|....+.......++.......+... .....+.++|++|+..+...
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 68 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID--------------GERIKIQLWDTAGQERFRKSM 68 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET--------------TEEEEEEEEECCCSHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE--------------CCCEEEEEEECCCCHHHCCCC
T ss_conf 999999999929899999997399988647642422001344564--------------022179998505731103212
Q ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHH----HHHH----HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 75015766630798712579976579999----9997----219955999982366458755888028999986449999
Q 000570 905 RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 976 (1415)
Q Consensus 905 r~rg~s~aDiaILVVDa~~Gv~~QT~E~l----~ll~----~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~ 976 (1415)
+...+..+|++|||+|+.+ +.+.+.+ ..+. ..++|++|+.||+|+.... ..+
T Consensus 69 ~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~----~v~------------- 128 (165)
T d1z06a1 69 VQHYYRNVHAVVFVYDMTN---MASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI----QVP------------- 128 (165)
T ss_dssp HHHHHTTCCEEEEEEETTC---HHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC----CSC-------------
T ss_pred CEEEECCCCCEEEEEEEEH---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCC----CHH-------------
T ss_conf 1036427882499998523---56666554212787763258997199992135500101----216-------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC---CCHHHHHHHH
Q ss_conf 99989899999999980783123201358896214994788778---9900489999
Q 000570 977 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG---EGIPDLLLLL 1030 (1415)
Q Consensus 977 ~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tG---eGI~eLl~~l 1030 (1415)
...+. .+... ..++++.|||+|| +||.+++..|
T Consensus 129 ------~~~~~-~~~~~--------------~~~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 129 ------TDLAQ-KFADT--------------HSMPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp ------HHHHH-HHHHH--------------TTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred ------HHHHH-HHHHH--------------CCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf ------99999-99998--------------79989998034297380799999986
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=7.2e-11 Score=94.66 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=106.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|+|||..++||||||.+|....+.. ..++|+.+.... +....+.++||+|+..|..++
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~~------~pTiG~~~~~~~--------------~~~~~~~~~d~~g~~~~~~~~ 62 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGSG------VPTTGIIEYPFD--------------LQSVIFRMVDVGGQRSERRKW 62 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSSC------CCCCSCEEEEEE--------------CSSCEEEEEECCCSTTGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC------CCEEEEEEEEEE--------------CCCEEEEECCCCCCCCCCCCC
T ss_conf 599999999998899999996799999------816627999984--------------020144420346642113433
Q ss_pred HHCCCCCCCEEEEEECCCCCC--------HHH---HHHHHHH-H---HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 501576663079871257997--------657---9999999-7---219955999982366458755888028999986
Q 000570 906 SRGSGLCDIAILVVDIMHGLE--------PQT---IESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~--------~QT---~E~l~ll-~---~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
...+..++.+++|++..+... ... ...|..+ . ..++|+++++||+|+...-.. ...+......
T Consensus 63 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~--~~~~~~~~~~ 140 (200)
T d2bcjq2 63 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPE 140 (200)
T ss_dssp GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTT--TSCHHHHSTT
T ss_pred CCCCCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCC--CHHHHHHCCC
T ss_conf 20023432046764035233213443130015999999999971142068517986130115665144--1477774631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 4499999998989999999998078312320135889621499478877899004899999999
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1034 (1415)
Q Consensus 971 q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~ 1034 (1415)
.. ............+...+....... ...+.++.|||++|.||..++..+...+
T Consensus 141 ~~-~~~~~~~~~~~~i~~~f~~~~~~~---------~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 141 YD-GPQRDAQAAREFILKMFVDLNPDS---------DKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp CC-SCSSCHHHHHHHHHHHHHTTCSCT---------TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHCCCC---------CCCEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 03-873359999999999999745367---------9961787748981781999999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=2.3e-10 Score=90.87 Aligned_cols=173 Identities=15% Similarity=0.117 Sum_probs=99.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 80668717999878999999839533555576037520367213331000000013445677979999399985114577
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 905 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~lr 905 (1415)
..|++||..++|||||+.+|....+.. +.+....+. +....+.+|||.|++.|..++
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~t-------~~~~~~~~~----------------~~~~~~~i~D~~Gq~~~~~~~ 59 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEAG-------TGIVETHFT----------------FKDLHFKMFDVGGQRSERKKW 59 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSCC-------CSEEEEEEE----------------ETTEEEEEEEECCSGGGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCC-------CCEEEEEEE----------------EEEEEEEEECCCCCCCCCCCH
T ss_conf 699999999988899999884089797-------247999997----------------433122100246651001111
Q ss_pred HHCCCCCCCEEEEEECCCCCC--------HHHHHH---HHHH----HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 501576663079871257997--------657999---9999----7219955999982366458755888028999986
Q 000570 906 SRGSGLCDIAILVVDIMHGLE--------PQTIES---LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 970 (1415)
Q Consensus 906 ~rg~s~aDiaILVVDa~~Gv~--------~QT~E~---l~ll----~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~ 970 (1415)
...+..++++++|+|..+... ....++ |..+ ...++|+++++||+|++..-- ...++......
T Consensus 60 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~--~~~~~~~~~~~ 137 (195)
T d1svsa1 60 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICYPE 137 (195)
T ss_dssp GGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTSCGGGTCTT
T ss_pred HHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHC--CCHHHHHHHHH
T ss_conf 1014677536668750342117777643678999999999996112027987899815321455413--53488787664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 449999999898999999999807831232013588962149947887789900489999999
Q 000570 971 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 971 q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
... ..........+...+....-. .....+.++.|||++|.||..+|..+...
T Consensus 138 ~~~--~~~~~~~~~~~~~~f~~~~~~--------~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 138 YAG--SNTYEEAAAYIQCQFEDLNKR--------KDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp CCS--CSSHHHHHHHHHHHHHTTCSC--------TTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HCC--CCCHHHHHHHHHHHHHHHHCC--------CCCCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 058--643899999999999997315--------67895055888868878399999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=6.9e-10 Score=87.27 Aligned_cols=178 Identities=18% Similarity=0.130 Sum_probs=100.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
|-..|+|+|..++|||||+.+|... ....+ ++|....... ++...+.++||+|++.+..
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f~---~~~~p----TiG~~~~~~~--------------~~~~~~~~~D~~gq~~~~~ 59 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRII---HGQDP----TKGIHEYDFE--------------IKNVPFKMVDVGGQRSERK 59 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH---HSCCC----CSSEEEEEEE--------------ETTEEEEEEEECC------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC---CCCCC----EEEEEEEEEE--------------EEEEEEEEECCCCEEEECC
T ss_conf 9589999989999989999988468---98887----2414999996--------------0144566513531144114
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCH--------HHHHHHHH----H---HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 775015766630798712579976--------57999999----9---72199559999823664587558880289999
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEP--------QTIESLNL----L---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 968 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~--------QT~E~l~l----l---~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l 968 (1415)
.+..+...++.+++|++..+.... ...+++.. + ...++|+++++||+|+...-- ...++....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~f 137 (200)
T d1zcba2 60 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV--QVVSIKDYF 137 (200)
T ss_dssp -CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTCCGGGTC
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHC--CCCHHHHHC
T ss_conf 233201000036799984770102310100114467889999996176546963999823114566502--450787747
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 86449999999898999999999807831232013588962149947887789900489999999
Q 000570 969 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1033 (1415)
Q Consensus 969 ~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l 1033 (1415)
... ......+......+...+....-+ .....+.++.|||+++.||..++..+...
T Consensus 138 ~~~-~~~~~~~~~~~~~~~~~f~~~~~~--------~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 138 LEF-EGDPHCLRDVQKFLVECFRGKRRD--------QQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp TTC-CSCTTCHHHHHHHHHHHHHTTCSS--------CC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 213-689626999999999999985558--------78884677782546758999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.6e-10 Score=92.09 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=94.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC-CCCEEEEECEEEE-----------------CCCCCCEEEE-----EC
Q ss_conf 58980668717999878999999839533555-5760375203672-----------------1333100000-----00
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYF-----------------PAENIRERTR-----EL 879 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~-----------------p~e~i~~~t~-----~i 879 (1415)
-|.++|+|.|.+|+|||||+++|.......|. .+-++.+....+. +.-.++.... .+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 98328974389999899999999999975698332203777610006515541367887405654101565553444420
Q ss_pred C-------CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 1-------344567797999939998511457750157666307987125799765799999997219955999982366
Q 000570 880 K-------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 880 ~-------~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~ 952 (1415)
. .-....+..+.||.|.|..-.. ......+|..|||+....|-.-|.+.. .+ +.++-|+||||+|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~-gi---~e~aDi~VvNKaD~ 204 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK-GL---MEVADLIVINKDDG 204 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH-HH---HHHCSEEEECCCCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCC---HHHHHCCCEEEEEECCCCCHHHHHHCH-HH---HCCCCEEEEEEECC
T ss_conf 332057899988649982787503211210---234403543899736887255554220-14---20155799986225
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 45875588802899998644999999989899999999980783123201358896214994788778990048999999
Q 000570 953 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 953 ~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
.. ++.. ...+..+...+....-.. . ...++|+.|||++|+||++|+..|..
T Consensus 205 ~~-------~~~~--------------~~~~~~~~~al~~~~~~~------~--~w~p~V~~~SA~~g~Gi~eL~~~I~~ 255 (327)
T d2p67a1 205 DN-------HTNV--------------AIARHMYESALHILRRKY------D--EWQPRVLTCSALEKRGIDEIWHAIID 255 (327)
T ss_dssp TC-------HHHH--------------HHHHHHHHHHHHHSCCSB------T--TBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred CC-------HHHH--------------HHHHHHHHHHHHHCCCCC------C--CCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 54-------5778--------------999999999863225577------7--77650489984189998999999999
Q ss_pred HHH
Q ss_conf 999
Q 000570 1033 WTQ 1035 (1415)
Q Consensus 1033 l~~ 1035 (1415)
+..
T Consensus 256 ~~~ 258 (327)
T d2p67a1 256 FKT 258 (327)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.98 E-value=3.2e-09 Score=82.28 Aligned_cols=176 Identities=18% Similarity=0.108 Sum_probs=98.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEE--EECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 066871799987899999983953355557603752036--721333100000001344567797999939998511457
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 904 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~--~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~l 904 (1415)
.|+++|..++||||||.+|....+. .++|.. .+... ...+.++|++|+..+...
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~--------pTiG~~~~~~~~~----------------~~~~~~~D~~Gq~~~r~~ 63 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVV--------LTSGIFETKFQVD----------------KVNFHMFDVGGQRDERRK 63 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--------CCCSCEEEEEEET----------------TEEEEEEECCCSTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--------CCCCEEEEEEEEC----------------CEEEEEEECCCCCEECCC
T ss_conf 7999989999889999989509827--------8888678999977----------------699999863765122011
Q ss_pred HHHCCCCCCCEEEEEECCCCC--------CHHHHHHHHHHH-------HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 750157666307987125799--------765799999997-------21995599998236645875588802899998
Q 000570 905 RSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 969 (1415)
Q Consensus 905 r~rg~s~aDiaILVVDa~~Gv--------~~QT~E~l~ll~-------~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~ 969 (1415)
+......++.+|+|+|...-. .....+++.++. ..++|+||++||+|+...--.....++..-..
T Consensus 64 w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~ 143 (221)
T d1azta2 64 WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFP 143 (221)
T ss_dssp GGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCG
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHCCCCCCHHHHCC
T ss_conf 23422566513799972541013223210577899899999986175437983899820466656532167421777484
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6449-----------99999989899999999980783123201358896214994788778990048999999
Q 000570 970 QQNT-----------DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1032 (1415)
Q Consensus 970 ~q~~-----------~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~ 1032 (1415)
.-.. .....+.....-+...+.... -.+......+-+..|||..+.+|..++..+..
T Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~------~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d 211 (221)
T d1azta2 144 EFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS------TASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211 (221)
T ss_dssp GGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHH------TSSCTTSCCEEEEECCTTCHHHHHHHHHTTHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCCCCEEEEECCEECCHHHHHHHHHHHH
T ss_conf 435667742123567872569999999999999985------34788787314566622562999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.95 E-value=2.9e-09 Score=82.55 Aligned_cols=179 Identities=17% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC-CCCEEEEECEEEECCCCCCEEEEE----------------------
Q ss_conf 358980668717999878999999839533555-576037520367213331000000----------------------
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRE---------------------- 878 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~iga~~~p~e~i~~~t~~---------------------- 878 (1415)
.-+.++|+|.|.+|+|||||+++|.......|. .+-|+.++...+.--..+..+++.
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg 127 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 127 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 69815986117998889999999999876368751344346554787750641013378875034401126653453311
Q ss_pred CC-------CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 01-------34456779799993999851145775015766630798712579976579999999721995599998236
Q 000570 879 LK-------ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 879 i~-------~~~~~~~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 951 (1415)
+. ......+..+.||-|.|..--. ......+|+.|+|+....|-.-|.+.. -.+.++-|||+||+|
T Consensus 128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~----gilE~aDi~vvNKaD 200 (323)
T d2qm8a1 128 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIFELADMIAVNKAD 200 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THHHHCSEEEEECCS
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEHHHHHHH---HHHHCCCCEEEEEEECCCHHHHHHHHH----HHHHHHHEEEEECCC
T ss_conf 0677899997641489985898632333214---665336654899861432455656323----476540204675424
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 64587558880289999864499999998989999999998078312320135889621499478877899004899999
Q 000570 952 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1031 (1415)
Q Consensus 952 ~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~ 1031 (1415)
+.. .......+. ......+.. +.........+++.+||++|+||++|+..|.
T Consensus 201 ~~~------~~~~~~~~~--------------~~~~~~l~~--------~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~ 252 (323)
T d2qm8a1 201 DGD------GERRASAAA--------------SEYRAALHI--------LTPPSATWTPPVVTISGLHGKGLDSLWSRIE 252 (323)
T ss_dssp TTC------CHHHHHHHH--------------HHHHHHHTT--------BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred CCC------CHHHHHHHH--------------HHHHHHHHC--------CCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 543------068999999--------------999998634--------5554457877369998217998799999999
Q ss_pred HHHH
Q ss_conf 9999
Q 000570 1032 QWTQ 1035 (1415)
Q Consensus 1032 ~l~~ 1035 (1415)
.+..
T Consensus 253 ~~~~ 256 (323)
T d2qm8a1 253 DHRS 256 (323)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.91 E-value=3.7e-08 Score=74.20 Aligned_cols=113 Identities=18% Similarity=0.061 Sum_probs=72.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCC-CCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH---
Q ss_conf 806687179998789999998395335-5557603752036721333100000001344567797999939998511---
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~-geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
+.|+|+|.+|+|||||++.|++..+.. ....+.|.+.-.+.+.+ .+..++||||||..+.
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~----------------~g~~i~viDTPGl~~~~~~ 96 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR----------------AGFTLNIIDTPGLIEGGYI 96 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE----------------TTEEEEEEECCCSEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEE----------------CCEEEEEEEEECCCCCCCH
T ss_conf 489998999986999999985898413358897604678988986----------------3388999752134677524
Q ss_pred ----HHHHH--HCCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHC-----CCCEEEEEEECCCCC
Q ss_conf ----45775--015766630798712579-976579999999721-----995599998236645
Q 000570 902 ----TNLRS--RGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMR-----NTEFIVALNKVDRLY 954 (1415)
Q Consensus 902 ----~~lr~--rg~s~aDiaILVVDa~~G-v~~QT~E~l~ll~~~-----~vP~IVviNKiD~~~ 954 (1415)
..... ......|.++||+.+... +.......+..+... -.++||++||+|...
T Consensus 97 ~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 97 NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEEEECCCCCC
T ss_conf 89999999999856898769999978887789999999999998732656638899998864477
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=4.8e-08 Score=73.37 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEE-----EEECEE---EECCCCCCEEE-EE---------------
Q ss_conf 5898066871799987899999983953355557603-----752036---72133310000-00---------------
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGAT---YFPAENIRERT-RE--------------- 878 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT-----q~iga~---~~p~e~i~~~t-~~--------------- 878 (1415)
+.-|-|+|+|+..+||||||++|++..+.....+..| ..++.. ........... ..
T Consensus 24 ~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_conf 88886999768989799999999689868878974035788999723565226898689971478899999999999885
Q ss_pred -----------CCCCCC-CCCCCEEEEECCCCCC-------------HHHHHHHCCCCCC-CEEEEEECCCCCCHHH-HH
Q ss_conf -----------013445-6779799993999851-------------1457750157666-3079871257997657-99
Q 000570 879 -----------LKANAT-LKVPGLLVIDTPGHES-------------FTNLRSRGSGLCD-IAILVVDIMHGLEPQT-IE 931 (1415)
Q Consensus 879 -----------i~~~~~-~~~~~l~iIDTPGHe~-------------F~~lr~rg~s~aD-iaILVVDa~~Gv~~QT-~E 931 (1415)
+..... -..++++||||||... +..+...++..++ ++++|+++...+..+. ..
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~ 183 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 07776767760799974799887257716874334667763147999999999986275603566403454211259999
Q ss_pred HHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 9999972199559999823664587
Q 000570 932 SLNLLKMRNTEFIVALNKVDRLYGW 956 (1415)
Q Consensus 932 ~l~ll~~~~vP~IVviNKiD~~~~w 956 (1415)
.+..+.....++++|+||+|+...|
T Consensus 184 ~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 184 IAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCH
T ss_conf 9997386778136677026655313
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.74 E-value=1.2e-07 Score=70.34 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEE-----EEECEEEECC----------------CCCCEE-----
Q ss_conf 35898066871799987899999983953355557603-----7520367213----------------331000-----
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-----QQIGATYFPA----------------ENIRER----- 875 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGIT-----q~iga~~~p~----------------e~i~~~----- 875 (1415)
.+-.|.|+|+|+..+||||||+.|++..+..-..+..| .+.+...... ..+...
T Consensus 21 ~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (306)
T d1jwyb_ 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (306)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHH
T ss_conf 78888599981898979999999968997887897540688899994577666765306566776268862237899999
Q ss_pred -----EE-------E-----CCCCC-CCCCCCEEEEECCCCCCH-------------HHHHHHCCCCCCCEEEEE-ECCC
Q ss_conf -----00-------0-----01344-567797999939998511-------------457750157666307987-1257
Q 000570 876 -----TR-------E-----LKANA-TLKVPGLLVIDTPGHESF-------------TNLRSRGSGLCDIAILVV-DIMH 923 (1415)
Q Consensus 876 -----t~-------~-----i~~~~-~~~~~~l~iIDTPGHe~F-------------~~lr~rg~s~aDiaILVV-Da~~ 923 (1415)
.. . +.... ....++++||||||.... ..+...++..++.+||+| ++..
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~ 180 (306)
T d1jwyb_ 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (306)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999987427777656650699824789888068658886443668840358999999999998277751687632563
Q ss_pred CCCH-HHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 9976-57999999972199559999823664587
Q 000570 924 GLEP-QTIESLNLLKMRNTEFIVALNKVDRLYGW 956 (1415)
Q Consensus 924 Gv~~-QT~E~l~ll~~~~vP~IVviNKiD~~~~w 956 (1415)
.+.. .+...+..+...+.++|+|+||+|.+..|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCH
T ss_conf 1003499999997386788589998204445316
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=1.2e-06 Score=62.68 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=60.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEE--EECEEEE-CCCCCCEEEEECCCC-----CCCCCCCEEEEECCCCC
Q ss_conf 668717999878999999839533555576037--5203672-133310000000134-----45677979999399985
Q 000570 828 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYF-PAENIRERTRELKAN-----ATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t~v~~geagGITq--~iga~~~-p~e~i~~~t~~i~~~-----~~~~~~~l~iIDTPGHe 899 (1415)
|+|+|.+++|||||+++|++++...+..+..|. ++|.+.. +.......+...+.. ..+....+.|+|+||..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli 82 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLV 82 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 76889999989999999978897032699775558626232778704656400368653323455566507999889744
Q ss_pred C-------HHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 1-------14577501576663079871257
Q 000570 900 S-------FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 900 ~-------F~~lr~rg~s~aDiaILVVDa~~ 923 (1415)
. ..+...+.++.||++|+|||+..
T Consensus 83 ~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 83 PGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp ------------CCCSSTTCSEEEEEEETTC
T ss_pred CCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 4300010058999974305527899851556
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=0.00015 Score=47.04 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=64.1
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45775015766630798712579976579999999721995599998236645875588802899998644999999989
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 981 (1415)
Q Consensus 902 ~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~ 981 (1415)
.......+..+|++|+|+|+..++.........+++ +.|+|+++||+|++.. .
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~-------~------------------ 58 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA-------A------------------ 58 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH-------H------------------
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCH-------H------------------
T ss_conf 999999997699999998888998988989999986--9985999987368866-------7------------------
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999807831232013588962149947887789900489999999999999
Q 000570 982 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1039 (1415)
Q Consensus 982 ~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~~~~l~ 1039 (1415)
........|.. ..+.++++|+.++.|+..+...+..++.....
T Consensus 59 ~~~~w~~~f~~---------------~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~ 101 (273)
T d1puja_ 59 VTQQWKEHFEN---------------QGIRSLSINSVNGQGLNQIVPASKEILQEKFD 101 (273)
T ss_dssp HHHHHHHHHHT---------------TTCCEEECCTTTCTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------CCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 79999999984---------------69865122112577753231033322221113
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=2.1e-05 Score=53.38 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---CC
Q ss_conf 655027999999817503999999932872699999942689610101220289988310110022100001112---45
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1122 (1415)
Q Consensus 1046 ~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa---~g 1122 (1415)
.||++.|.++|.+.|.|++++|.|.+|+|++||.+.+.+++ ...+|+++++|++.+..| ..
T Consensus 2 kP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~~ 65 (94)
T d1f60a1 2 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG----------------VTTEVKSVEMHHEQLEQGVPGDN 65 (94)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT----------------EEEEEEEEEETTEECSCBCTTCE
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 98898998899808822899875611468789899988678----------------32799999995847687648985
Q ss_pred EEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 056015653235799529929986
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~vv~~~~ 1146 (1415)
+.+.+.++.......+++++.+..
T Consensus 66 v~l~l~~i~~~~i~rG~vl~~~~~ 89 (94)
T d1f60a1 66 VGFNVKNVSVKEIRRGNVCGDAKN 89 (94)
T ss_dssp EEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEECCCHHHCCCCCEEECCCC
T ss_conf 999985760875478789878999
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=2e-05 Score=53.60 Aligned_cols=87 Identities=15% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---C
Q ss_conf 4655027999999817503999999932872699999942689610101220289988310110022100001112---4
Q 000570 1045 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---Q 1121 (1415)
Q Consensus 1045 ~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa---~ 1121 (1415)
..||+++|.++|.+.|.|++++|.|.+|+|++||.+.+.+... ....+++++++|+..+..+ .
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~--------------~~~~~vksi~~~~~~~~~a~aG~ 68 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE--------------TQKSTCTGVEMFRKLLDEGRAGE 68 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSS--------------CEEEEEEEEEETTEEESEEETTC
T ss_pred CCCEEEEEEEEEECCCEEEEEEEEECCCEECCCCEEEEECCCC--------------CCEEEEEEEEECCCCCCCCCCCC
T ss_conf 8788989897998298579889786367681899999972799--------------81899999999884705537888
Q ss_pred CEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 505601565323579952992998
Q 000570 1122 GIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1122 gv~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
.+.+.+.|++......+++++.|.
T Consensus 69 ~v~l~L~gi~~~~i~rG~vl~~pG 92 (92)
T d1efca1 69 NVGVLLRGIKREEIERGQVLAKPG 92 (92)
T ss_dssp EEEEEETTCCGGGCCTTCEEECTT
T ss_pred EEEEEECCCCHHHCCCCCEEECCC
T ss_conf 899998488899807855996799
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.88 E-value=8.9e-06 Score=56.22 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCC-CCCEEEE---E-------------CEEEECCCCCCEEEEECCC---CC
Q ss_conf 8980668717999878999999839533555-5760375---2-------------0367213331000000013---44
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ---I-------------GATYFPAENIRERTRELKA---NA 883 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~---i-------------ga~~~p~e~i~~~t~~i~~---~~ 883 (1415)
++-||+++|..|+||||.+-+|...-...+. .+-||.+ + +..++...........+.. ..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~ 90 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 90 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 99899998999999899999999999977993699972023551567898740146842230244102447899999874
Q ss_pred CCCCCCEEEEECCCCCCHH---HHH---H--HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 5677979999399985114---577---5--0157666307987125799765799999997219955999982366458
Q 000570 884 TLKVPGLLVIDTPGHESFT---NLR---S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG 955 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~---~lr---~--rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~~~ 955 (1415)
......+.||||||...+. ..+ . ......+-.+||+++..|.... ..........++. -+++||+|-..
T Consensus 91 ~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~~-~lI~TKlDet~- 167 (211)
T d1j8yf2 91 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKIG-TIIITKMDGTA- 167 (211)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTTE-EEEEECTTSCS-
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHCCCCCC-EEEEECCCCCC-
T ss_conf 02677369985377676313667899999998625976689998435684067-7876653036755-37886036888-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 7558880289999864499999998989999999998078312320135889621499478877899004899
Q 000570 956 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLL 1028 (1415)
Q Consensus 956 w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~Ii~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~ 1028 (1415)
++-.++......+ +|+..+| +|++|++|..
T Consensus 168 --------------------------~~G~~l~~~~~~~---------------lPi~~it--~Gq~v~DL~~ 197 (211)
T d1j8yf2 168 --------------------------KGGGALSAVAATG---------------ATIKFIG--TGEKIDELEV 197 (211)
T ss_dssp --------------------------CHHHHHHHHHTTT---------------CCEEEEE--CSSSTTCEEE
T ss_pred --------------------------CCCHHHHHHHHHC---------------CCEEEEE--CCCCCCCCCC
T ss_conf --------------------------6149988999989---------------4979996--7998001751
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.82 E-value=1.4e-05 Score=54.82 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCC-CCCCCCCEEE--EECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCC--
Q ss_conf 8066871799987899999983953-3555576037--5203672133310000000134456779799993999851--
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 900 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGITq--~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~-- 900 (1415)
..|+|+|-+++|||||+++|+...+ ..+..++.|. ++|...+|.......+.... ...+....+.|+|.||...
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~-~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYK-PKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHC-CSEEECEEEEEECTGGGCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCC-CCCEECCCCEEEECCCCCCCC
T ss_conf 3799978999989999999977898774789966703876899606634001431056-774442543144135445664
Q ss_pred -----HHHHHHHCCCCCCCEEEEEECCC
Q ss_conf -----14577501576663079871257
Q 000570 901 -----FTNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 901 -----F~~lr~rg~s~aDiaILVVDa~~ 923 (1415)
..+....-++.||+.|+||++..
T Consensus 90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 90 STGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 0135508999998612462699985147
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.81 E-value=6.6e-05 Score=49.66 Aligned_cols=123 Identities=24% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEECCCC-CCHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5766630798712579-97657-999999972199559999823664587558880289999864499999998989999
Q 000570 909 SGLCDIAILVVDIMHG-LEPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 ~s~aDiaILVVDa~~G-v~~QT-~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I 986 (1415)
.+..|.+++|+++... +...- ..+|-.+...++|.||++||+|++. .+ ....+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~-------~~------------------~~~~~ 62 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD-------ED------------------DLRKV 62 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC-------HH------------------HHHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-------HH------------------HHHHH
T ss_conf 566888999986789999989999999999986997799996766678-------79------------------99999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHCCCCC-CEEEEEE
Q ss_conf 999998078312320135889621499478877899004899999999----------99999853114655-0279999
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNEL-QCTVLEV 1055 (1415)
Q Consensus 987 i~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~----------~~~l~e~l~~~~~~-~~~VlEv 1055 (1415)
...+..+ ...++++.+|+.+|.|++.|..++...+ -..+...|.....+ .+.|.+
T Consensus 63 ~~~~~~~-------------~~~~~v~~vSa~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~- 128 (225)
T d1u0la2 63 RELEEIY-------------SGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE- 128 (225)
T ss_dssp HHHHHHH-------------TTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred HHHHCCC-------------CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC-
T ss_conf 9754034-------------66136888415441557669999569808997889877888877305355501068420-
Q ss_pred EEECCCCEEEEEEEE
Q ss_conf 998175039999999
Q 000570 1056 KVIEGHGTTIDVVLV 1070 (1415)
Q Consensus 1056 ~~~~G~Gtvi~~iV~ 1070 (1415)
..-.|..||....++
T Consensus 129 ~~~rGrHTTt~~~l~ 143 (225)
T d1u0la2 129 KLQRGRHTTTTAQLL 143 (225)
T ss_dssp -------CCCSCCEE
T ss_pred CCCCCCCCCCCEEEE
T ss_conf 048987511331478
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=97.78 E-value=4.2e-05 Score=51.17 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---
Q ss_conf 14655027999999817503999999932872699999942689610101220289988310110022100001112---
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1120 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa--- 1120 (1415)
...||++.|.++|.+.|.||+++|.|.+|+|+.||.+.+++.... ...+|+++++|++.+..+
T Consensus 4 ~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~--------------~~~~V~si~~~~~~~~~a~aG 69 (98)
T d1d2ea1 4 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKN--------------IRTVVTGIEMFHKSLDRAEAG 69 (98)
T ss_dssp TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEE--------------EEEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCEEEEEEECCCEEEECCCCCC--------------EEEEEEEEEEECCEECCCCCC
T ss_conf 898789899878983892788763040036838999997357877--------------057999999916386207887
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 45056015653235799529929986
Q 000570 1121 QGIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~vv~~~~ 1146 (1415)
..+.+.+.+++......+++++.+..
T Consensus 70 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 95 (98)
T d1d2ea1 70 DNLGALVRGLKREDLRRGLVMAKPGS 95 (98)
T ss_dssp CEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 89999985898998567019957998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=3.8e-05 Score=51.43 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC-CCEEE---EE-------------CEEEECCCCCCEEEEECCC---CC
Q ss_conf 89806687179998789999998395335555-76037---52-------------0367213331000000013---44
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQ---QI-------------GATYFPAENIRERTRELKA---NA 883 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq---~i-------------ga~~~p~e~i~~~t~~i~~---~~ 883 (1415)
++-||+++|..|+||||.+-+|.......+.. +-||. .+ +..++......+....+.. ..
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a 87 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 87 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99799998999999899999999999977994799823213666120455543433886211356877999999999999
Q ss_pred CCCCCCEEEEECCCCCCHHHH-H------HH-----CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 567797999939998511457-7------50-----15766630798712579976579999999721995599998236
Q 000570 884 TLKVPGLLVIDTPGHESFTNL-R------SR-----GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~l-r------~r-----g~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 951 (1415)
......+.||||||.-.+... + .+ .....+-.+||+|++.|.... ...+......+ +--+++||+|
T Consensus 88 ~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~-~~~~~~~~~~~-~~~lIlTKlD 165 (211)
T d2qy9a2 88 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEAVG-LTGITLTKLD 165 (211)
T ss_dssp HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHH-HHHHHHHHHSC-CCEEEEECCT
T ss_pred HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHH-HHHHHHHHCCC-CCEEEEEECC
T ss_conf 876998899656887632077899999999998530466860012200123576337-78764421017-8648996127
Q ss_pred CC
Q ss_conf 64
Q 000570 952 RL 953 (1415)
Q Consensus 952 ~~ 953 (1415)
-.
T Consensus 166 e~ 167 (211)
T d2qy9a2 166 GT 167 (211)
T ss_dssp TC
T ss_pred CC
T ss_conf 88
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.76 E-value=1.1e-05 Score=55.66 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=61.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCC--CCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH---
Q ss_conf 06687179998789999998395335555--7603752036721333100000001344567797999939998511---
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 901 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~gea--gGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F--- 901 (1415)
.|+|+|-+++|||||+++|+...+..+.. ..|..++|...+|-..+...+...... .+-...+.|+|.||...-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~-~~~~a~i~~~Di~GLi~ga~~ 82 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPE-RILPTTMEFVDIAGLVAGASK 82 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCS-EEECCEEEEEECCSCCTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC-CEEEEEEEEEECCCCCCCCCC
T ss_conf 4888899999889999999779974136998887784589964358689897743888-455216899972631788535
Q ss_pred ----HHHHHHCCCCCCCEEEEEECCC
Q ss_conf ----4577501576663079871257
Q 000570 902 ----TNLRSRGSGLCDIAILVVDIMH 923 (1415)
Q Consensus 902 ----~~lr~rg~s~aDiaILVVDa~~ 923 (1415)
.+.-.+-++.||+.|.|||+..
T Consensus 83 g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf 78765899999985062588851468
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.74 E-value=0.00011 Score=48.02 Aligned_cols=86 Identities=27% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCC---CC
Q ss_conf 465502799999981750399999993287269999994268961010122028998831011002210000111---24
Q 000570 1045 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQ 1121 (1415)
Q Consensus 1045 ~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~a---a~ 1121 (1415)
..||++.|.++|.+.|.|+++.|.|.+|+|+.||.+++++++ ...+|+++++|+..+.. +.
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG~ 66 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG----------------KVGEVRSIETHHTKMDKAEPGD 66 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTT----------------EEEEEEEEEETTEEESEECTTC
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC----------------CEEEEEEEEECCCCCCEEECCC
T ss_conf 868898999999729964378899714212489999998089----------------6479999885697457892898
Q ss_pred CEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 5056015653235799529929986
Q 000570 1122 GIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1122 gv~i~~~gL~~~~aG~~~~vv~~~~ 1146 (1415)
.+.+.+.+++......+.+++.++.
T Consensus 67 ~v~l~l~~i~~~~i~rG~vl~~~~~ 91 (95)
T d1jnya1 67 NIGFNVRGVEKKDIKRGDVVGHPNN 91 (95)
T ss_dssp EEEEEEESSCGGGCCTTCEEECTTS
T ss_pred CEEEEEECCCHHHCCCCCEEECCCC
T ss_conf 6999997685874289799988995
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.74 E-value=2.7e-05 Score=52.60 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=43.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC-CCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCC
Q ss_conf 5898066871799987899999983953-3555576037520367213331000000013445677979999399985
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe 899 (1415)
.+...|+|+|.+++|||||+++|++... ..+..+|+|.++-... ....+.|+||||.-
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~-------------------~~~~~~l~DTPGi~ 168 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK-------------------VGKELELLDTPGIL 168 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE-------------------ETTTEEEEECCCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEE-------------------CCCCEEEECCCCCC
T ss_conf 775278998667544355542542661588789532245534898-------------------79975995389744
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=97.74 E-value=7.8e-05 Score=49.10 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---
Q ss_conf 14655027999999817503999999932872699999942689610101220289988310110022100001112---
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1120 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa--- 1120 (1415)
...+|++.|.++|.+.|.|++++|.|.+|+|+.||.+.+++.. |. ....+|+++++|+..+..|
T Consensus 5 ~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~------------p~-~~~~~V~sI~~~~~~~~~a~aG 71 (100)
T d2c78a1 5 VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA------------PE-TRKTVVTGVEMHRKTLQEGIAG 71 (100)
T ss_dssp CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSS------------SS-CEEEEEEEEEETTEEESEEETT
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEECCEEECCCEEEEEEEC------------CC-CCEEEEEEEEECCCCCCEEECC
T ss_conf 8999899999999729967899999963579789871787606------------89-8189999999879640589389
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 45056015653235799529929986
Q 000570 1121 QGIKITAQGLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~vv~~~~ 1146 (1415)
..+.+.+.+++......+++++.+..
T Consensus 72 ~~v~l~l~gi~~~~i~rG~vl~~p~~ 97 (100)
T d2c78a1 72 DNVGVLLRGVSREEVERGQVLAKPGS 97 (100)
T ss_dssp CEEEEEESSCCTTTCCTTCEEESTTS
T ss_pred CEEEEEECCCCHHHCCCCCEEECCCC
T ss_conf 81899981777887358689977998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.66 E-value=2.4e-05 Score=53.01 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCC-CCCEEEE----------------ECEEEECCCCCCEEEEEC---CCCC
Q ss_conf 8980668717999878999999839533555-5760375----------------203672133310000000---1344
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ----------------IGATYFPAENIRERTREL---KANA 883 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-agGITq~----------------iga~~~p~e~i~~~t~~i---~~~~ 883 (1415)
++-+|+++|..|+||||.+-+|...-...+. .+-||.+ ++..++...........+ ....
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 89 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 89 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999977990699960133420467888776432764103677776899878878999
Q ss_pred CCCCCCEEEEECCCCCCHHHH-H----------HH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 567797999939998511457-7----------50-15766630798712579976579999999721995599998236
Q 000570 884 TLKVPGLLVIDTPGHESFTNL-R----------SR-GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 951 (1415)
Q Consensus 884 ~~~~~~l~iIDTPGHe~F~~l-r----------~r-g~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD 951 (1415)
..+...+.||||||...+... + .. ....++-.+||++++.|... ....+......+ +--++++|+|
T Consensus 90 ~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lI~TKlD 167 (213)
T d1vmaa2 90 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNG-LVQAKIFKEAVN-VTGIILTKLD 167 (213)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHH-HHHHHHHHHHSC-CCEEEEECGG
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-HHHHHHHCCCCC-CCEEEEECCC
T ss_conf 87699989982455330168888998888766420256665025786212348433-556565401227-8658984246
Q ss_pred CC
Q ss_conf 64
Q 000570 952 RL 953 (1415)
Q Consensus 952 ~~ 953 (1415)
-.
T Consensus 168 e~ 169 (213)
T d1vmaa2 168 GT 169 (213)
T ss_dssp GC
T ss_pred CC
T ss_conf 78
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00024 Score=45.38 Aligned_cols=129 Identities=21% Similarity=0.115 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC------CCCCCCCCEEEEE---C---EEEECCCCCCEEEEECCCCC--------
Q ss_conf 89806687179998789999998395------3355557603752---0---36721333100000001344--------
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI---G---ATYFPAENIRERTRELKANA-------- 883 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~------v~~geagGITq~i---g---a~~~p~e~i~~~t~~i~~~~-------- 883 (1415)
+-|++.|.|..|+||||||.+|+... +...+.|.+..+- . .......+. -.|..+....
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~g-cicc~~~~~~~~~l~~~~ 80 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNG-CICCSRSNELEDALLDLL 80 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTS-CEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCC-CCEECCCHHHHHHHHHHH
T ss_conf 9788998648889999999999856789837999736641122334302566524884388-400000036777788999
Q ss_pred -----CCCCCCEEEEECCCCCCHHHHHHH--------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf -----567797999939998511457750--------1576663079871257997657999999972199559999823
Q 000570 884 -----TLKVPGLLVIDTPGHESFTNLRSR--------GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 884 -----~~~~~~l~iIDTPGHe~F~~lr~r--------g~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKi 950 (1415)
....+...||-|.|-.....+... .....+.+|.|||+..+........+ +......-=+|++||+
T Consensus 81 ~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~-~~~Qi~~AD~ivlNK~ 159 (222)
T d1nija1 81 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRILLTKT 159 (222)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHH-HHHHHHTCSEEEEECT
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCC
T ss_conf 998604677653678622421046899998852014442111340213335544444334678-9999986883024464
Q ss_pred CCCC
Q ss_conf 6645
Q 000570 951 DRLY 954 (1415)
Q Consensus 951 D~~~ 954 (1415)
|+..
T Consensus 160 Dl~~ 163 (222)
T d1nija1 160 DVAG 163 (222)
T ss_dssp TTCS
T ss_pred CCCC
T ss_conf 5533
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.54 E-value=5.4e-05 Score=50.29 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCC-----------CCCCEEE------EECEEEECCCCCCEEEEECC---CC
Q ss_conf 5898066871799987899999983953355-----------5576037------52036721333100000001---34
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQ------QIGATYFPAENIRERTRELK---AN 882 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-----------eagGITq------~iga~~~p~e~i~~~t~~i~---~~ 882 (1415)
.++-+|+++|..|+||||.+-+|.......| +.+++-| .++..++...........+. ..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 83 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA 83 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99779999899999889999999999997799079998136665402667640545682389616774278899998999
Q ss_pred CCCCCCCEEEEECCCCCCHHHH-------HHH-----CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 4567797999939998511457-------750-----1576663079871257997657999999972199559999823
Q 000570 883 ATLKVPGLLVIDTPGHESFTNL-------RSR-----GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 950 (1415)
Q Consensus 883 ~~~~~~~l~iIDTPGHe~F~~l-------r~r-----g~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKi 950 (1415)
.......+.||||||...+... ..+ -....+-.+||++++.|.. ............++ --+++||+
T Consensus 84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~-~~lI~TKl 161 (207)
T d1okkd2 84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVGL-TGVIVTKL 161 (207)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH-HHHHHHHHHHCCCC-CEEEEECC
T ss_conf 99879999971752223112778888777777765325678735999962004716-78999975021388-64898336
Q ss_pred CCCC
Q ss_conf 6645
Q 000570 951 DRLY 954 (1415)
Q Consensus 951 D~~~ 954 (1415)
|-..
T Consensus 162 Det~ 165 (207)
T d1okkd2 162 DGTA 165 (207)
T ss_dssp TSSC
T ss_pred CCCC
T ss_conf 8888
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.34 E-value=9.3e-05 Score=48.53 Aligned_cols=68 Identities=28% Similarity=0.397 Sum_probs=38.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCC-CCEEEEECCCCC
Q ss_conf 358980668717999878999999839533-555576037520367213331000000013445677-979999399985
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHE 899 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~-~~l~iIDTPGHe 899 (1415)
.++..+.+++|+.|+|||||+++|...... .++ |....+. .++-|+... .+.. .+-.+|||||..
T Consensus 92 ~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~---vs~~~~r-------GrHTTt~~~---l~~l~~gg~iiDTPG~r 158 (225)
T d1u0la2 92 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE---VSEKLQR-------GRHTTTTAQ---LLKFDFGGYVVDTPGFA 158 (225)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----------------------CCCSCC---EEECTTSCEEESSCSST
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHCCHHHHHCCC---CCCCCCC-------CCCCCCCEE---EEEECCCCEEEECCCCC
T ss_conf 9569808997889877888877305355501068---4200489-------875113314---78978991799687655
Q ss_pred CHH
Q ss_conf 114
Q 000570 900 SFT 902 (1415)
Q Consensus 900 ~F~ 902 (1415)
.|.
T Consensus 159 ~~~ 161 (225)
T d1u0la2 159 NLE 161 (225)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 455
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.32 E-value=0.00031 Score=44.56 Aligned_cols=125 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEECCC-CCCHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 576663079871257-997657-999999972199559999823664587558880289999864499999998989999
Q 000570 909 SGLCDIAILVVDIMH-GLEPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 986 (1415)
Q Consensus 909 ~s~aDiaILVVDa~~-Gv~~QT-~E~l~ll~~~~vP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I 986 (1415)
....|.+++|+++.+ .+.... ..+|-++...+++.||++||+|++. .... ...+..+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~------~~~~---------------~~~~~~~ 66 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE------DQDT---------------EDTIQAY 66 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC------CHHH---------------HHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------CHHH---------------HHHHHHH
T ss_conf 565688999987889999989999999999986997799995601136------4888---------------8899999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHCCCCC-CEEEEEE
Q ss_conf 999998078312320135889621499478877899004899999999----------99999853114655-0279999
Q 000570 987 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNEL-QCTVLEV 1055 (1415)
Q Consensus 987 i~~L~e~gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~l~~l~----------~~~l~e~l~~~~~~-~~~VlEv 1055 (1415)
...+...| ++++.+|+.+|.|+..|..++..-. -..+...|.....+ .+.|.+
T Consensus 67 ~~~y~~~g---------------~~v~~~Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~- 130 (231)
T d1t9ha2 67 AEDYRNIG---------------YDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE- 130 (231)
T ss_dssp HHHHHHHT---------------CCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HHHHHHCC---------------CCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC-
T ss_conf 99976445---------------55046624871679999986435649998778734878987515176764035553-
Q ss_pred EEECCCCEEEEEEEE
Q ss_conf 998175039999999
Q 000570 1056 KVIEGHGTTIDVVLV 1070 (1415)
Q Consensus 1056 ~~~~G~Gtvi~~iV~ 1070 (1415)
..-.|..||....++
T Consensus 131 ~~~rGrHTTt~~~l~ 145 (231)
T d1t9ha2 131 HLGRGKHTTRHVELI 145 (231)
T ss_dssp --------CCCCCEE
T ss_pred CCCCCCEEEEEEEEE
T ss_conf 358971244347888
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.23 E-value=0.00019 Score=46.12 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCC-CCEEEE---E-------------CEEEECCCCCCEEEEE---CCCCCCCC
Q ss_conf 06687179998789999998395335555-760375---2-------------0367213331000000---01344567
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQ---I-------------GATYFPAENIRERTRE---LKANATLK 886 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t~v~~gea-gGITq~---i-------------ga~~~p~e~i~~~t~~---i~~~~~~~ 886 (1415)
+|+++|..|+||||.+-+|...-...+.. +-||.+ + +..+............ ........
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 91 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89998999998899999999999977992799954434640888899999862886311124420367888898887633
Q ss_pred CCCEEEEECCCCCCHHH--HH----HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 79799993999851145--77----501576663079871257997657999999972199559999823664
Q 000570 887 VPGLLVIDTPGHESFTN--LR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~--lr----~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~~ 953 (1415)
...+.||||||...+.. +. ......++..+||++++.|..... .........++ -=++++|+|-.
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~~~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VARAFDEKVGV-TGLVLTKLDGD 162 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HHHHHHHHTCC-CEEEEECGGGC
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH-HHHHHHHHCCC-CEEEEEECCCC
T ss_conf 6764033454420000366889999986318736999843455616899-99999864799-70588603765
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.12 E-value=2.8e-05 Score=52.48 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---
Q ss_conf 14655027999999817503999999932872699999942689610101220289988310110022100001112---
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1120 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa--- 1120 (1415)
...+|+++|.++|.+.|.|++++|.|.+|++++||.+.+++++ ...+|+++++|+..+..+
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~----------------~~~~VksI~~~~~~~~~a~aG 66 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAKAG 66 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC----------------CCEEECCBCGGGSCBCCCCSS
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEEECCC----------------CCEEEEEEEECCCEEEEECCC
T ss_conf 8987899999999828957998769810658169769972358----------------706777666858142480899
Q ss_pred CCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 4505601565323579952992998
Q 000570 1121 QGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1121 ~gv~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
..+.+.+.+++......+.+++.++
T Consensus 67 d~v~l~L~gi~~~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 67 DRVGMAIQGVDAKQIYRGCILTSKD 91 (92)
T ss_dssp CCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred CEEEEEECCCCHHHCCCCCEEECCC
T ss_conf 8977998088889848869996899
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.08 E-value=0.0024 Score=37.91 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCCC-CEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCC---
Q ss_conf 4655-027999999817503999999932872699999942689610101220289988310110022100001112---
Q 000570 1045 RNEL-QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA--- 1120 (1415)
Q Consensus 1045 ~~~~-~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa--- 1120 (1415)
..|+ +++|..+|.+.| |++++|.|.+|++++||.+.+.+ ...+|+++++|++.+..+
T Consensus 6 ~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p------------------~~~~VksIq~~~~~v~~a~~G 66 (91)
T d1xe1a_ 6 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPS------------------GIGGIVRIERNREKVEFAIAG 66 (91)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSS------------------CEEEEEEEEETTEEESEEETT
T ss_pred CCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCCEEEECC------------------CCEEEEEEEECCEEHHHHHHC
T ss_conf 79853736887999899-67999998028868999999899------------------618999998804582032012
Q ss_pred CCEEEECCC
Q ss_conf 450560156
Q 000570 1121 QGIKITAQG 1129 (1415)
Q Consensus 1121 ~gv~i~~~g 1129 (1415)
..+.+.+.+
T Consensus 67 ~~v~l~L~~ 75 (91)
T d1xe1a_ 67 DRIGISIEG 75 (91)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEECC
T ss_conf 346899868
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.00 E-value=0.001 Score=40.72 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHH
Q ss_conf 14655027999999817503--------9999999328726999999426896101012202899883101100221000
Q 000570 1044 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1115 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gt--------vi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ 1115 (1415)
...++++.|..+|.+.|.|+ +++|.|.+|+|+.||.|.+.++.. ......+. .-..+.+|+++++|+.
T Consensus 5 ~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~--~~~~~~~~--~~~~~~~V~sI~~~~~ 80 (121)
T d1kk1a1 5 PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVP--YEEHGRIK--YEPITTEIVSLQAGGQ 80 (121)
T ss_dssp TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEE--EEETTEEE--EEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEECCCEEEECCCCC--CCCCCCEE--CEEEEEEEEEEEECCC
T ss_conf 8999688999899844899762247622778546278784099899878972--01145011--1020058989997897
Q ss_pred HHCCC---CCEEEECC---CCCCCCCCCCEEEECCCC
Q ss_conf 01112---45056015---653235799529929986
Q 000570 1116 QIKAA---QGIKITAQ---GLEHAIAGTGLYVVGPDD 1146 (1415)
Q Consensus 1116 ev~aa---~gv~i~~~---gL~~~~aG~~~~vv~~~~ 1146 (1415)
.+..| +.+.|.+. ++.......+++++.++.
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~ 117 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred CCCEEECCCEEEEEECCCCCCCHHHHCCEEEEECCCC
T ss_conf 7398968996999962467823347332547888998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.91 E-value=0.0002 Score=45.98 Aligned_cols=69 Identities=28% Similarity=0.458 Sum_probs=38.2
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCC
Q ss_conf 1358980668717999878999999839533-555576037520367213331000000013445677979999399985
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 899 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe 899 (1415)
..++.-+.+++|+.|+|||||+++|+..... .++ |....+ ..++-|+... . +...+-.||||||..
T Consensus 93 ~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~---vs~~~~-------rGrHTTt~~~--l-~~~~gg~iiDTPG~r 159 (231)
T d1t9ha2 93 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE---ISEHLG-------RGKHTTRHVE--L-IHTSGGLVADTPGFS 159 (231)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------CCCCC--E-EEETTEEEESSCSCS
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHCC---CCCCCC-------CCCEEEEEEE--E-EECCCCEEEECCCCC
T ss_conf 86435649998778734878987515176764035---553358-------9712443478--8-862797899787666
Q ss_pred CHH
Q ss_conf 114
Q 000570 900 SFT 902 (1415)
Q Consensus 900 ~F~ 902 (1415)
.|.
T Consensus 160 ~~~ 162 (231)
T d1t9ha2 160 SLE 162 (231)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 665
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.89 E-value=0.0039 Score=36.25 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=50.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEECCCC
Q ss_conf 7979999399985114577501576663079871257997657999999972199559-999823664
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VviNKiD~~ 953 (1415)
...+.|+|||+..... ....+..+|.+|+|+.....-..++...+..+...++|++ |++|+.++.
T Consensus 111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~ 176 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 2898998043321111--00122222103434321000011036777777531023443210135653
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.78 E-value=0.0019 Score=38.63 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEE-EHHHHC---C
Q ss_conf 146550279999998175039999999328726999999426896101012202899883101100221-000011---1
Q 000570 1044 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL-HHKQIK---A 1119 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~-~~~ev~---a 1119 (1415)
...||++.|.++| +|.|++++|.|.+|+|+.||.|++.+++ . ...|++++. ++..+. +
T Consensus 6 ~~~PlR~pV~d~~--kg~G~vv~G~v~sG~i~~gd~v~i~P~~--~--------------~~~Vk~I~~~~~~~v~~a~a 67 (95)
T d1r5ba1 6 VNAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPIN--Q--------------TLEVTAIYDEADEEISSSIC 67 (95)
T ss_dssp HTSCCEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETTT--E--------------EEEEEEEECTTCCEESEEET
T ss_pred CCCCEEEEEEEEE--CCCCEEEEEEEEECEEECCCEEEEECCC--C--------------EEEEEEEEEECCCCCCCCCC
T ss_conf 9999898998898--1998799999936769679999994179--8--------------89999999974666567289
Q ss_pred CCCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf 24505601565323579952992998
Q 000570 1120 AQGIKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1120 a~gv~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
+..+.+.+.+.. ...-.+.+++.++
T Consensus 68 Gd~V~l~l~~~~-~di~rG~vl~~~~ 92 (95)
T d1r5ba1 68 GDQVRLRVRGDD-SDVQTGYVLTSTK 92 (95)
T ss_dssp TCEEEEEEESCC-TTCCTTCEEECSS
T ss_pred CCEEEEEECCCC-CCCCCCCEEECCC
T ss_conf 987999982840-0669977997579
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.67 E-value=0.003 Score=37.10 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHH
Q ss_conf 14655027999999817503--------9999999328726999999426896101012202899883101100221000
Q 000570 1044 FRNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK 1115 (1415)
Q Consensus 1044 ~~~~~~~~VlEv~~~~G~Gt--------vi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ 1115 (1415)
...+++++|..+|.+.+.|+ +++|.|.+|+|++||.|.+.++... +..+... .-.-..+|+++++|+.
T Consensus 3 ~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~--~~~~~~~--~~~~~t~V~sI~~~~~ 78 (118)
T d1s0ua1 3 PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKV--TEGNKTF--WKPLTTKIVSLAAGNT 78 (118)
T ss_dssp TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEE--CCTTCCE--EEEEEEECCEEEETTE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEECCEEEECCCCCC--CCCCEEE--EEEEEEEEEEEEECCC
T ss_conf 89895789986771158998644555517775553647863888998778730--1266030--0121079989997896
Q ss_pred HHCCC---CCEEEECC---CCCCCCCCCCEEEECCC
Q ss_conf 01112---45056015---65323579952992998
Q 000570 1116 QIKAA---QGIKITAQ---GLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1116 ev~aa---~gv~i~~~---gL~~~~aG~~~~vv~~~ 1145 (1415)
.+..| ..+.|.+. ++.....-.+.++..+.
T Consensus 79 ~v~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg 114 (118)
T d1s0ua1 79 ILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPG 114 (118)
T ss_dssp EESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred CCCEEECCCEEEEEECCCCCCCHHHHEEEEEEECCC
T ss_conf 637882899799996467894578910014786799
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.0076 Score=34.11 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred HCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCCCC
Q ss_conf 11465502799999981750399999993287269999994268961010122028998831011002210000111245
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122 (1415)
Q Consensus 1043 ~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa~g 1122 (1415)
.+..+|.+.|+.+.+....|.++.++|++|+|+.|+.|..++.+ ..-+|..|+.....+...+ . .+.+|
T Consensus 22 d~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~--~~~rv~~l~~~~g~~~~~v-------~--~~~aG 90 (121)
T d2bv3a1 22 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG--RKERVARLLRMHANHREEV-------E--ELKAG 90 (121)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTT--EEEEECEEEEECSSCEEEE-------S--EEETT
T ss_pred CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC--CEEEEEEEEEEECCCCCEE-------E--EECCC
T ss_conf 99988789997433067888677512112556899999981499--7799724355203663382-------0--86045
Q ss_pred EEEECCCCCCCCCCCCEEEEC
Q ss_conf 056015653235799529929
Q 000570 1123 IKITAQGLEHAIAGTGLYVVG 1143 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~vv~ 1143 (1415)
-.+++.||..+..|+.+.-..
T Consensus 91 dI~~i~gl~~~~~GDTl~~~~ 111 (121)
T d2bv3a1 91 DLGAVVGLKETITGDTLVGED 111 (121)
T ss_dssp CEEEEESCSSCCTTCEEEETT
T ss_pred CCEEEECCCCCEECCEEECCC
T ss_conf 436786658860277774699
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.013 Score=32.43 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=60.7
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016-899859989986223522998762-3991433478821002365523333798189998159970001111421
Q 000570 1293 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|+ +..+.|+--.|..|+|+.|..+++ +.+ .....+|.||+.+++++..|..|+.|+|.|.|.+. -+
T Consensus 11 d~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~-~~~~~~vksi~~~~~~~~~a~aG~~v~l~L~gi~~--------~~ 81 (92)
T d1efca1 11 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK-ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR--------EE 81 (92)
T ss_dssp CEEEECTTSCEEEEEECCBSEEETTCEEEEESSS-SCEEEEEEEEEETTEEESEEETTCEEEEEETTCCG--------GG
T ss_pred EEEEECCCEEEEEEEEECCCEECCCCEEEEECCC-CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCH--------HH
T ss_conf 9799829857988978636768189999997279-98189999999988470553788889999848889--------98
Q ss_pred CCCCCEEEE
Q ss_conf 367984997
Q 000570 1371 FDIEDELVS 1379 (1415)
Q Consensus 1371 f~~~d~l~s 1379 (1415)
+.-|+.|..
T Consensus 82 i~rG~vl~~ 90 (92)
T d1efca1 82 IERGQVLAK 90 (92)
T ss_dssp CCTTCEEEC
T ss_pred CCCCCEEEC
T ss_conf 078559967
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.012 Score=32.54 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=49.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCC--CCCC-CCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 8066871799987899999983953--3555-576037520367213331000000013445677979999399985114
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNV--QEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 902 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v--~~ge-agGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~ 902 (1415)
.+|+|+|...+|||+||+.|.++.. ..+. ....|..|..+..|... -....+.|+||.|..+..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~-------------~~~~~~~~lDteG~~~~~ 99 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPK-------------KPGHILVLLDTEGLGDVE 99 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSS-------------STTCEEEEEEECCBCCGG
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCC-------------CCCCEEEEEECCCCCCCC
T ss_conf 9999889999979999999809987876478777777765899854157-------------887469998245434544
Q ss_pred --------HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf --------57750157666307987125799765799999
Q 000570 903 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN 934 (1415)
Q Consensus 903 --------~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ 934 (1415)
.+-...+.++++.| +.....+.......+.
T Consensus 100 ~~~~~~~~~i~~l~~llSs~~i--~N~~~~~~~~~l~~L~ 137 (277)
T d1f5na2 100 KGDNQNDSWIFALAVLLSSTFV--YNSIGTINQQAMDQLY 137 (277)
T ss_dssp GCCCTTHHHHHHHHHHHCSEEE--EEEESCSSHHHHHTTH
T ss_pred CCCCHHHHHHHHHHHHHHCEEE--EECCCCCCHHHHHHHH
T ss_conf 4650457999999999728799--9321557689999989
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.08 E-value=0.021 Score=30.81 Aligned_cols=76 Identities=29% Similarity=0.285 Sum_probs=61.3
Q ss_pred CCCCCCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 62016899859989986223522998762399143347882100236552333379818999815997000111142136
Q 000570 1293 NCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1372 (1415)
Q Consensus 1293 ~~vf~~~~p~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~f~ 1372 (1415)
+.+|+-..+.|+-..|..|.|+.|..+.+..+ ..+|.||+.+++++++|..|+.|+|.|.+ +. .++.
T Consensus 15 d~vf~i~GgtVvtGtV~sG~i~~Gd~v~~~p~----~~~VksIq~~~~~v~~a~~G~~v~l~L~~-~~--------~di~ 81 (91)
T d1xe1a_ 15 EEVVNIMGKDVIIGTVESGMIGVGFKVKGPSG----IGGIVRIERNREKVEFAIAGDRIGISIEG-KI--------GKVK 81 (91)
T ss_dssp EEEEEETTEEEEEEEEEEEEEETTCEEECSSC----EEEEEEEEETTEEESEEETTCEEEEEEES-CC--------CCCC
T ss_pred EEEEEECCCEEEEEEEEECCCCCCCEEEECCC----CEEEEEEEECCEEHHHHHHCCEEEEEECC-CC--------CCCC
T ss_conf 87999899679999980288689999998996----18999998804582032012346899868-84--------7768
Q ss_pred CCCEEEECC
Q ss_conf 798499726
Q 000570 1373 IEDELVSHI 1381 (1415)
Q Consensus 1373 ~~d~l~s~i 1381 (1415)
-||.|-.+-
T Consensus 82 rGdvL~~~~ 90 (91)
T d1xe1a_ 82 KGDVLEIYQ 90 (91)
T ss_dssp TTCEEEEEC
T ss_pred CCCEEEECC
T ss_conf 878998545
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=95.80 E-value=0.0071 Score=34.30 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=45.8
Q ss_pred CCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 20168-99859989986223522998762-39914334788210023655233337981899981599700011114213
Q 000570 1294 CVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1371 (1415)
Q Consensus 1294 ~vf~~-~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~f 1371 (1415)
+|++. .+..++.=.|..|.|++|..+.+ +.+. ..+|.+|+.+++++++|..|+.|+|.|.+.. ++
T Consensus 13 ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~---~~~Vk~I~~~~~~~~~a~~G~~v~l~L~~~~----------di 79 (92)
T d1zunb1 13 YVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK---SSRVKSIVTFEGELEQAGPGQAVTLTMEDEI----------DI 79 (92)
T ss_dssp EEECSSSSCCEEEEECCBSCEETTCEEEETTTCC---EEEEEEEEETTEEESEECTTCEEEEEESSCC----------CC
T ss_pred EEECCCCCCCEEEEEECCCEEECCCEEEECCCCC---EEEEEEEEECCCCCCEECCCCEEEEEECCCC----------CC
T ss_conf 9981599805899998604796699999889995---2887677985745688959999899976811----------44
Q ss_pred CCCCEEEEC
Q ss_conf 679849972
Q 000570 1372 DIEDELVSH 1380 (1415)
Q Consensus 1372 ~~~d~l~s~ 1380 (1415)
.-||.|.+.
T Consensus 80 ~RGdvl~~~ 88 (92)
T d1zunb1 80 SRGDLLVHA 88 (92)
T ss_dssp CTTCEEEET
T ss_pred CCCCEEECC
T ss_conf 998899658
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.80 E-value=0.0089 Score=33.57 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=37.6
Q ss_pred CCCCCEEEEEEEEECCCCE--------EEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHH
Q ss_conf 4655027999999817503--------99999993287269999994268961010122028998831011002210000
Q 000570 1045 RNELQCTVLEVKVIEGHGT--------TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1116 (1415)
Q Consensus 1045 ~~~~~~~VlEv~~~~G~Gt--------vi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~e 1116 (1415)
..+++++|..+|.+.+.|+ +++|.|.+|+|+.||.|.+.+.... .+..... ..| ...+|+++++|+..
T Consensus 4 ~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~--~~~~~~~-~~~-~~t~V~sI~~~~~~ 79 (114)
T d2qn6a1 4 SQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRV--EKQGKVS-YEP-IFTKISSIRFGDEE 79 (114)
T ss_dssp TSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEE--EETTEEE-EEE-EEEEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEECCCCCC--CCCCEEE-EEE-CCEEEEEEEECCCC
T ss_conf 8996188862111468999720265449998973561772878998678742--3376164-100-21699999989926
Q ss_pred HCCC
Q ss_conf 1112
Q 000570 1117 IKAA 1120 (1415)
Q Consensus 1117 v~aa 1120 (1415)
+..|
T Consensus 80 v~~A 83 (114)
T d2qn6a1 80 FKEA 83 (114)
T ss_dssp ESEE
T ss_pred CCEE
T ss_conf 1789
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=95.67 E-value=0.027 Score=29.96 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=61.1
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016-899859989986223522998762-3991433478821002365523333798189998159970001111421
Q 000570 1293 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|. +..+.|+-=.|..|+|+.|..+.+ .... -...+|.||+.+++++++|..|+.|||.|.+-+. -.
T Consensus 13 d~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~-~~~~~V~si~~~~~~~~~a~aG~~v~l~l~gi~~--------~~ 83 (98)
T d1d2ea1 13 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK-NIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKR--------ED 83 (98)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTE-EEEEEEEEEEETTEEESEEETTCEEEEEESSCCG--------GG
T ss_pred EEEEEECCCEEEEECCEEEEEEECCCEEEECCCCC-CEEEEEEEEEEECCEECCCCCCCEEEEEECCCCH--------HH
T ss_conf 87898389278876304003683899999735787-7057999999916386207887899999858989--------98
Q ss_pred CCCCCEEEEC
Q ss_conf 3679849972
Q 000570 1371 FDIEDELVSH 1380 (1415)
Q Consensus 1371 f~~~d~l~s~ 1380 (1415)
+.-|+.|.+.
T Consensus 84 i~rG~vl~~p 93 (98)
T d1d2ea1 84 LRRGLVMAKP 93 (98)
T ss_dssp CCTTCEEEST
T ss_pred CCCCCEEECC
T ss_conf 5670199579
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.028 Score=29.82 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=61.9
Q ss_pred ECCCCCCC-CCCCEEEEEEEEECEEECCCCEEEC-CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 51562016-8998599899862235229987623-991433478821002365523333798189998159970001111
Q 000570 1290 ILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMF 1367 (1415)
Q Consensus 1290 i~~~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~ 1367 (1415)
+.-+.+|. ...+.|+--+|..|.|+.|..+.+. ...--....|.||+.+++.+.+|..|+.|+|.|.+.+.
T Consensus 11 ~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~~~~~~a~aG~~v~l~l~gi~~------- 83 (100)
T d2c78a1 11 MPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR------- 83 (100)
T ss_dssp EECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCT-------
T ss_pred EEEEEEEECCCCEEEEEEEEECCEEECCCEEEEEEECCCCCEEEEEEEEECCCCCCEEECCCEEEEEECCCCH-------
T ss_conf 9999999729967899999963579789871787606898189999999879640589389818999817778-------
Q ss_pred CCCCCCCCEEEE
Q ss_conf 421367984997
Q 000570 1368 GRHFDIEDELVS 1379 (1415)
Q Consensus 1368 gr~f~~~d~l~s 1379 (1415)
-++.-|+.|..
T Consensus 84 -~~i~rG~vl~~ 94 (100)
T d2c78a1 84 -EEVERGQVLAK 94 (100)
T ss_dssp -TTCCTTCEEES
T ss_pred -HHCCCCCEEEC
T ss_conf -87358689977
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.028 Score=29.82 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016-899859989986223522998762-3991433478821002365523333798189998159970001111421
Q 000570 1293 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|+ ...+.|+--+|..|+|+.|..+.+ +.+ ...+|.||+.+++++.+|..|+.|||.|.+-+. -+
T Consensus 9 ~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~--------~~ 77 (94)
T d1f60a1 9 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG---VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSV--------KE 77 (94)
T ss_dssp EEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT---EEEEEEEEEETTEECSCBCTTCEEEEEESSCCT--------TT
T ss_pred EEEEEECCEEEEEEEEEECCCCCCCCEEEECCCC---CEEEEEEEEECCCCCCEECCCCEEEEEEECCCH--------HH
T ss_conf 8899808822899875611468789899988678---327999999958476876489859999857608--------75
Q ss_pred CCCCCEEE
Q ss_conf 36798499
Q 000570 1371 FDIEDELV 1378 (1415)
Q Consensus 1371 f~~~d~l~ 1378 (1415)
+.-|+.|-
T Consensus 78 i~rG~vl~ 85 (94)
T d1f60a1 78 IRRGNVCG 85 (94)
T ss_dssp SCTTCEEE
T ss_pred CCCCCEEE
T ss_conf 47878987
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.39 E-value=0.024 Score=30.37 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=58.0
Q ss_pred HCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCCCC
Q ss_conf 11465502799999981750399999993287269999994268961010122028998831011002210000111245
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQG 1122 (1415)
Q Consensus 1043 ~~~~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa~g 1122 (1415)
....++.+.|+.+.+....|.+..++|++|+|+.||.|..++.. .++..++....... .... .+..|
T Consensus 5 ~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~----~~~~~~~~~~~~~~-------~~v~--~~~aG 71 (103)
T d2dy1a1 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ----VRLPHLYVPMGKDL-------LEVE--EAEAG 71 (103)
T ss_dssp HCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSC----EEESSEEEEETTEE-------EEES--CEETT
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECC----CCCCEEEEEECCCC-------EECC--EECCC
T ss_conf 79999589999977258998799999921565799999975423----22110234404762-------0367--71589
Q ss_pred EEEECCCCCCCCCCCCEEE
Q ss_conf 0560156532357995299
Q 000570 1123 IKITAQGLEHAIAGTGLYV 1141 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~v 1141 (1415)
..+++.|+..+..|+.+.-
T Consensus 72 dI~~v~g~~~~~iGDTl~~ 90 (103)
T d2dy1a1 72 FVLGVPKAEGLHRGMVLWQ 90 (103)
T ss_dssp CEEEESSCTTCCTTCEEES
T ss_pred CEEEEECCCCCCCCCEECC
T ss_conf 7999958777765788817
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.031 Score=29.49 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 980668717999878999999839
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
-|+++|+|..|+|||||+.+|...
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 788999918999899999999999
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.99 E-value=0.047 Score=28.08 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=60.1
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016-899859989986223522998762-3991433478821002365523333798189998159970001111421
Q 000570 1293 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|+ ...+.|+--+|..|.|+.|..+.+ +.+ ...+|.||+.++.++++|..|+.|+|.|.+.+. -+
T Consensus 11 ~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~--------~~ 79 (95)
T d1jnya1 11 QDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG---KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEK--------KD 79 (95)
T ss_dssp EEEEEETTTEEEEEEECCBSCEETTCEEEEETTT---EEEEEEEEEETTEEESEECTTCEEEEEEESSCG--------GG
T ss_pred EEEEECCCCEEEEEEEEEECCCCCCCEEEEEECC---CEEEEEEEEECCCCCCEEECCCCEEEEEECCCH--------HH
T ss_conf 9999729964378899714212489999998089---647999988569745789289869999976858--------74
Q ss_pred CCCCCEEEE
Q ss_conf 367984997
Q 000570 1371 FDIEDELVS 1379 (1415)
Q Consensus 1371 f~~~d~l~s 1379 (1415)
+.-|+.|-+
T Consensus 80 i~rG~vl~~ 88 (95)
T d1jnya1 80 IKRGDVVGH 88 (95)
T ss_dssp CCTTCEEEC
T ss_pred CCCCCEEEC
T ss_conf 289799988
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.088 Score=26.06 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred HCCCCCCEEEEEEEEECCCCEE-EEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHH----HH
Q ss_conf 1146550279999998175039-999999328726999999426896101012202899883101100221000----01
Q 000570 1043 TFRNELQCTVLEVKVIEGHGTT-IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHK----QI 1117 (1415)
Q Consensus 1043 ~~~~~~~~~VlEv~~~~G~Gtv-i~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~----ev 1117 (1415)
++..|+.+.|....+....|.. ..++|++|+|+.|+.+.+++.++.. ..+..+...++..+|..+. +|
T Consensus 30 d~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~-------~~~~~~~~~~i~~i~~~~g~~~~~v 102 (138)
T d1n0ua1 30 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVP-------GKKDDLFIKAIQRVVLMMGRFVEPI 102 (138)
T ss_dssp CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCS-------SSCTTEEEEECCEEEEEETTEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEECCCCCC-------CCCCCCCEEEEEEEEEEECCCEEEE
T ss_conf 999998999986124898888999998884558179999984688622-------4455420004415677715760267
Q ss_pred CC-CCCEEEECCCCCCCCCCC
Q ss_conf 11-245056015653235799
Q 000570 1118 KA-AQGIKITAQGLEHAIAGT 1137 (1415)
Q Consensus 1118 ~a-a~gv~i~~~gL~~~~aG~ 1137 (1415)
.. ..|..+++.||+..+..+
T Consensus 103 ~~a~AGdIvai~Gl~~~i~k~ 123 (138)
T d1n0ua1 103 DDCPAGNIIGLVGIDQFLLKT 123 (138)
T ss_dssp SEEETTCEEEEESCTTTCCSS
T ss_pred EEEECCCEEEEECCCCCEECC
T ss_conf 588327578973344524502
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.035 Score=29.08 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=54.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 35898066871799987899999983953355557603752036721333100000001344567797999939998511
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 901 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F 901 (1415)
..++.+|.++|.+++|||||...|.... ++..+..+.++.. ..+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~-------------~~~~i~~D~~~~~-----------------------~~~ 54 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-------------GYVHVNRDTLGSW-----------------------QRC 54 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG-------------TCEEEEHHHHCSH-----------------------HHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC-------------CCEEECHHHHHHH-----------------------HHH
T ss_conf 9999899998999998999999999765-------------9789760777788-----------------------899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 457750157666307987125799765799999997219955999982366
Q 000570 902 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 902 ~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~ 952 (1415)
....... +.....+|||.+.....+-...+.+++..+++++++.-..+.
T Consensus 55 ~~~~~~~--l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~ 103 (172)
T d1yj5a2 55 VSSCQAA--LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI 103 (172)
T ss_dssp HHHHHHH--HHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH
T ss_pred HHHHHHH--HHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 9999999--977999555176799999999999998558887999948999
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=94.35 E-value=0.11 Score=25.34 Aligned_cols=82 Identities=26% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCCCC-C--
Q ss_conf 6550279999998175039999999328726999999426896101012202899883101100221000011124-5--
Q 000570 1046 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ-G-- 1122 (1415)
Q Consensus 1046 ~~~~~~VlEv~~~~G~Gtvi~~iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~aa~-g-- 1122 (1415)
.+|++.|-.|+...+.++.+.|.|.+|+|+.||.|++++++ ...+|+++++|++.+..|. |
T Consensus 5 ~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg----------------~~~~Vk~I~~~~~~~~~a~~G~~ 68 (92)
T d1zunb1 5 TDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG----------------KSSRVKSIVTFEGELEQAGPGQA 68 (92)
T ss_dssp SSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTC----------------CEEEEEEEEETTEEESEECTTCE
T ss_pred CCEEEEEEEEECCCCCCCEEEEEECCCEEECCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 77488679998159980589999860479669999988999----------------52887677985745688959999
Q ss_pred EEEECCCCCCCCCCCCEEEECCC
Q ss_conf 05601565323579952992998
Q 000570 1123 IKITAQGLEHAIAGTGLYVVGPD 1145 (1415)
Q Consensus 1123 v~i~~~gL~~~~aG~~~~vv~~~ 1145 (1415)
+.+.+.+ ......+.+++.++
T Consensus 69 v~l~L~~--~~di~RGdvl~~~~ 89 (92)
T d1zunb1 69 VTLTMED--EIDISRGDLLVHAD 89 (92)
T ss_dssp EEEEESS--CCCCCTTCEEEETT
T ss_pred EEEEECC--CCCCCCCCEEECCC
T ss_conf 8999768--11449988996589
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.24 E-value=0.018 Score=31.31 Aligned_cols=111 Identities=11% Similarity=-0.008 Sum_probs=58.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH--
Q ss_conf 806687179998789999998395335555760375203672133310000000134456779799993999851145--
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 903 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~-- 903 (1415)
.+|+++|.+++|||||..+|....-..+ .. ...+..+..+..... .......+.++......
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~----~~----~~~~~~D~~r~~~~~--------~~~~~~~~~~~~~~~~~~~ 66 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIG----VP----TREFNVGQYRRDMVK--------TYKSFEFFLPDNEEGLKIR 66 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT----CC----EEEEEHHHHHHHHHC--------SCCCGGGGCTTCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC----CC----CEEECCCCEEHHHCC--------CCCCCCCCCCCCCCCHHHH
T ss_conf 8999989999999999999999997469----99----739745301132304--------5433211222220001468
Q ss_pred ---------HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf ---------7750157666307987125799765799999997219955999982366
Q 000570 904 ---------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 952 (1415)
Q Consensus 904 ---------lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiD~ 952 (1415)
.....+....+.++|+|+..+...+-.....++...+.+++++.+.++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 67 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCH
T ss_conf 7888999999999998618988986067764899998999987549807998850367
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.15 E-value=0.029 Score=29.71 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCEEEEEEEEECCCCEEEEE-EEEEEEECCCCEEEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEHHHHCC---CCC
Q ss_conf 550279999998175039999-9993287269999994268961010122028998831011002210000111---245
Q 000570 1047 ELQCTVLEVKVIEGHGTTIDV-VLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQG 1122 (1415)
Q Consensus 1047 ~~~~~VlEv~~~~G~Gtvi~~-iV~~G~Lk~GD~Ivi~g~~g~i~~~Ir~ll~p~p~~e~rvk~~~~~~~ev~a---a~g 1122 (1415)
|.+..++.-+.+.+.++.+.+ .|.+|+|++|+.|++.+.+ ...+|++++.+++.+.. ++.
T Consensus 4 P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~----------------~~g~VksIq~~~~~v~~A~~G~~ 67 (128)
T d1g7sa2 4 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGE----------------TVGTVESMQDKGENLKSASRGQK 67 (128)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSC----------------EEEEEEEEEETTEEESEEETTCC
T ss_pred EEEEEECCCCEECCCCCEEEEEEEEEEEECCCCEEEECCCC----------------CEEEEEEEEECCCCCCEECCCCE
T ss_conf 17999768767527998599999935263089979988999----------------35899999998821117828998
Q ss_pred EEEECCCCC---CCCCCCCEEEECCCCCHHHH
Q ss_conf 056015653---23579952992998618999
Q 000570 1123 IKITAQGLE---HAIAGTGLYVVGPDDDLEDV 1151 (1415)
Q Consensus 1123 v~i~~~gL~---~~~aG~~~~vv~~~~~~~~~ 1151 (1415)
|.|++.|.. +...|+.+|+--+...+..+
T Consensus 68 Vai~I~g~~~gr~i~~gD~L~s~i~~~~i~~l 99 (128)
T d1g7sa2 68 VAMAIKDAVYGKTIHEGDTLYVDIPENHYHIL 99 (128)
T ss_dssp EEEEEETCCBTTTBCTTCEEEECCCHHHHHTT
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99997685337789988899996998999999
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.01 E-value=0.11 Score=25.42 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEECCCC
Q ss_conf 7979999399985114577501576663079871257997657999999972199559-999823664
Q 000570 887 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 953 (1415)
Q Consensus 887 ~~~l~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~I-VviNKiD~~ 953 (1415)
...+.|+|||++...... ..+..+|.+++|+.....-.......+..+...+++.+ +++|+.+..
T Consensus 109 ~~D~viiD~~~~~~~~~~--~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 109 STDILLLDAPAGLERSAV--IAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174 (232)
T ss_dssp TCSEEEEECCSSSSHHHH--HHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred CCCEEEECCCCCCCCHHH--HHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 364353033222220257--776542303220222211024566666654310111222223334434
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.93 E-value=0.04 Score=28.66 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEE---------EEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 2016899859989986223522998762-399143---------347882100236552333379818999815997000
Q 000570 1294 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFI---------DIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQ 1363 (1415)
Q Consensus 1294 ~vf~~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i---------~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~ 1363 (1415)
+.|+.-.+.|++=.|..|.|+.|..+.+ +.+... ...+|.||+.++.++.+|..|+.|||.+..-.+
T Consensus 22 t~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l~~d~~--- 98 (118)
T d1s0ua1 22 TEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY--- 98 (118)
T ss_dssp CCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGG---
T ss_pred CCCCCCCCCEEEEEECCCEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEECCCEEEEEECCCCC---
T ss_conf 86445555177755536478638889987787301266030012107998999789663788289979999646789---
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 111142136798499
Q 000570 1364 QKMFGRHFDIEDELV 1378 (1415)
Q Consensus 1364 ~~~~gr~f~~~d~l~ 1378 (1415)
+---++..|+.|.
T Consensus 99 --i~r~Di~~G~Vl~ 111 (118)
T d1s0ua1 99 --LTKSDALTGSVVG 111 (118)
T ss_dssp --GTGGGTTTTCEEE
T ss_pred --CCHHHHEEEEEEE
T ss_conf --4578910014786
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.67 E-value=0.14 Score=24.44 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCCCCCCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCC-CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016899859989986223522998762-3991433478821002-365523333798189998159970001111421
Q 000570 1293 NCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN-NHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~-~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|+ ..+.|+-.+|..|.|+.|..+.+ +.+ ....|.+|+. +++.|.+|..|+.|+|.|.+-. ..
T Consensus 15 ~d~~k-g~G~vv~G~v~sG~i~~gd~v~i~P~~---~~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~~~~---------~d 81 (95)
T d1r5ba1 15 ASKYK-DLGTILEGKIEAGSIKKNSNVLVMPIN---QTLEVTAIYDEADEEISSSICGDQVRLRVRGDD---------SD 81 (95)
T ss_dssp CEEEE-SSSEEEEEECCBSEEETTEEEEEETTT---EEEEEEEEECTTCCEESEEETTCEEEEEEESCC---------TT
T ss_pred EEEEC-CCCEEEEEEEEECEEECCCEEEEECCC---CEEEEEEEEEECCCCCCCCCCCCEEEEEECCCC---------CC
T ss_conf 88981-998799999936769679999994179---889999999974666567289987999982840---------06
Q ss_pred CCCCCEEEEC
Q ss_conf 3679849972
Q 000570 1371 FDIEDELVSH 1380 (1415)
Q Consensus 1371 f~~~d~l~s~ 1380 (1415)
+..|+.|.+.
T Consensus 82 i~rG~vl~~~ 91 (95)
T d1r5ba1 82 VQTGYVLTST 91 (95)
T ss_dssp CCTTCEEECS
T ss_pred CCCCCEEECC
T ss_conf 6997799757
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.28 E-value=0.11 Score=25.19 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=48.3
Q ss_pred CCCEEEEEEEEECEEECCCCEEE-CCCC------EE---EEEEEEECCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 99859989986223522998762-3991------43---347882100236552333379818999815
Q 000570 1299 KDPIVLGVDVVEGIAKVGTPICI-PQRD------FI---DIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357 (1415)
Q Consensus 1299 ~~p~IaG~~V~~G~lk~g~~i~v-~~~~------~i---~~G~I~Slk~~k~~V~~a~kG~evgI~i~~ 1357 (1415)
-.+.|++=.|..|.|+.|..+.+ +.+. +. ...+|.||+.++.++++|..|+-|||.+..
T Consensus 27 ~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v~~A~aG~~V~i~l~~ 95 (114)
T d2qn6a1 27 LKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYL 95 (114)
T ss_dssp CCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESS
T ss_pred CCCEEEEEEECCCCEEECCEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECCCEEEEEECC
T ss_conf 654499989735617728789986787423376164100216999999899261789579989999635
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.11 E-value=0.18 Score=23.80 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=47.9
Q ss_pred CCEEEEEEEEECEEECCCCEEE-CCCCE---------EEEEEEEECCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 9859989986223522998762-39914---------3347882100236552333379818999815
Q 000570 1300 DPIVLGVDVVEGIAKVGTPICI-PQRDF---------IDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1357 (1415)
Q Consensus 1300 ~p~IaG~~V~~G~lk~g~~i~v-~~~~~---------i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~ 1357 (1415)
.+.|+.=.|..|.|+.|..+.+ +.+.. -...+|.||+.+++++++|..|+.|||.+..
T Consensus 30 ~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~~~v~~A~~G~~Vgv~l~~ 97 (121)
T d1kk1a1 30 VGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKL 97 (121)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESS
T ss_pred CCEEEEEEECCCEEECCCEEEECCCCCCCCCCCEECEEEEEEEEEEEECCCCCCEEECCCEEEEEECC
T ss_conf 62277854627878409989987897201145011102005898999789773989689969999624
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.62 E-value=0.17 Score=23.87 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 89806687179998789999998395335555760375203672133310000000134456779799993999851145
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 903 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~p~e~i~~~t~~i~~~~~~~~~~l~iIDTPGHe~F~~ 903 (1415)
++ |.|.|.+++|||||++.|+..- .. ...-+|..- +.+. .. .....+.-+.+.++..|..
T Consensus 167 ~n--ili~G~tgSGKTT~l~al~~~i-~~-~~rivtiEd-----~~El--------~l---~~~~~~~~~~~~~~~~~~~ 226 (323)
T d1g6oa_ 167 KN--VIVCGGTGSGKTTYIKSIMEFI-PK-EERIISIED-----TEEI--------VF---KHHKNYTQLFFGGNITSAD 226 (323)
T ss_dssp CC--EEEEESTTSSHHHHHHHHGGGS-CT-TCCEEEEES-----SCCC--------CC---SSCSSEEEEECBTTBCHHH
T ss_pred CC--EEEEEECCCCCHHHHHHHHHHC-CC-CCCEEECCC-----HHHH--------HC---CCCCCCCEECCCCCHHHHH
T ss_conf 88--8999403566257899986530-14-562331132-----2655--------11---1124541001465424999
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 775015766630798712579976579999999721995599
Q 000570 904 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 945 (1415)
Q Consensus 904 lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IV 945 (1415)
+....++. +.-.+||.=..|. .+...+..+ ..+.+.++
T Consensus 227 ll~~~lR~-~pd~iivgEiR~~--ea~~~l~a~-~tGh~g~~ 264 (323)
T d1g6oa_ 227 CLKSCLRM-RPDRIILGELRSS--EAYDFYNVL-CSGHKGTL 264 (323)
T ss_dssp HHHHHTTS-CCSEEEESCCCST--HHHHHHHHH-HTTCSCEE
T ss_pred HHHHHHCC-CCCCCCCCCCCCH--HHHHHHHHH-HHCCCCEE
T ss_conf 99997434-9985457866746--599999999-81698579
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.59 E-value=0.084 Score=26.20 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCC
Q ss_conf 0668717999878999999839
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t 848 (1415)
+++|+|..|+|||||+.+|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999809999899999999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=92.22 E-value=0.23 Score=22.97 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCC
Q ss_conf 0668717999878999999839
Q 000570 827 ICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~t 848 (1415)
.|+|+|..|+|||||+..|.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 8999989993899999999814
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.98 E-value=0.04 Score=28.65 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=58.3
Q ss_pred CCCCC-CCCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 62016-899859989986223522998762-3991433478821002365523333798189998159970001111421
Q 000570 1293 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1370 (1415)
Q Consensus 1293 ~~vf~-~~~p~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~~a~kG~evgI~i~~~n~~~~~~~~gr~ 1370 (1415)
+.+|. ...+.|+-=+|..|+|+.|..+.+ +.+ ...+|.||+.+++++++|..|+-|||.|.+-+. -+
T Consensus 12 ~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~--------~~ 80 (92)
T d1wb1a1 12 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN---MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDA--------KQ 80 (92)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC---CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCS--------SC
T ss_pred EEEEEECCCEEEEEEEEEECEEECCCEEEEECCC---CCEEEEEEEECCCEEEEECCCCEEEEEECCCCH--------HH
T ss_conf 9999828957998769810658169769972358---706777666858142480899897799808888--------98
Q ss_pred CCCCCEEEE
Q ss_conf 367984997
Q 000570 1371 FDIEDELVS 1379 (1415)
Q Consensus 1371 f~~~d~l~s 1379 (1415)
+.-|+.|.+
T Consensus 81 i~rG~vl~~ 89 (92)
T d1wb1a1 81 IYRGCILTS 89 (92)
T ss_dssp CCSSCBCCC
T ss_pred CCCCCEEEC
T ss_conf 488699968
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=89.87 E-value=0.36 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 66871799987899999983
Q 000570 828 CCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~ 847 (1415)
|+|.|-.|+||||+.-.|..
T Consensus 4 Iai~gKGGvGKTT~a~nLA~ 23 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989985779999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=89.85 E-value=0.12 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.5
Q ss_pred CEEEEECCCCCHHHHHHHHHC
Q ss_conf 066871799987899999983
Q 000570 827 ICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 827 iV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+|+|.|.+++|||||...|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.49 Score=20.44 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=21.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 58980668717999878999999839
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
...+.+.+.|++|+||||++..|...
T Consensus 50 ~~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 50 GVFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88744999879999888999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=0.5 Score=20.39 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHHHHHHCC
Q ss_conf 668717999878999999839
Q 000570 828 CCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~t 848 (1415)
|.|.|.+|+|||||+..|...
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889997199999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.19 E-value=0.22 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 5898066871799987899999983
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
-++++|+|+|.+++||||+...|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8994899989999988999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.77 E-value=0.22 Score=22.99 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
-|.|+|+|.+|+||||+...|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 89798989999998999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.26 E-value=0.27 Score=22.34 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 1358980668717999878999999839
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
.-.+.-+++|+|+.|+|||||+..|.+-
T Consensus 58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 58 NIEKGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9859999999989998299999999579
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=85.81 E-value=0.33 Score=21.77 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 5898066871799987899999983
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
.++.+|+|+|+.|+||||+...|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9988899982899988999999999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.64 E-value=0.25 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 358980668717999878999999839
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
-.+-=+++|+|+.|+|||||+..|.+-
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCCCHHHHHCCCC
T ss_conf 849979999889999821655750688
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=0.3 Score=21.99 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 589806687179998789999998395
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
.+-=+++|+|+.|+|||||+..|.+-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999899982999999996587
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.29 Score=22.13 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 589806687179998789999998395
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
.+--+|+|+|..|+|||||+..|.+-.
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 499999999999998999999997357
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.49 E-value=0.24 Score=22.71 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 1358980668717999878999999839
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
.+.|+.+|+|-|..++|||||+..|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7998619998899998889999999987
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.36 E-value=0.31 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 3589806687179998789999998395
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
--+.-+++|+|+-|+|||||+..|.+-.
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 24 IEKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8599899999999971999999996620
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.39 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 35898066871799987899999983
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
++|.| |+|+|..++|||||+.+|+.
T Consensus 1 ~m~k~-ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 1 HMRKT-LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHH
T ss_conf 99771-99999899999999999997
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.84 E-value=0.36 Score=21.43 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+.+|+|.|.+++|||||...|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989997879999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.82 E-value=0.36 Score=21.48 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 58980668717999878999999839
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
.+.-+++|+|+.++|||||+..|.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 59999999999998599999998621
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=83.78 E-value=0.39 Score=21.16 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 589806687179998789999998395
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
..--+++|+|+.|+|||||+..|.+-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999980999999996487
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.67 E-value=0.46 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+++|+|+|.+|+||||+...|..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 72999988999998999999999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=83.41 E-value=0.36 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=21.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 589806687179998789999998395
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
.+.-+|+|+|+.|+|||||+..|.+-.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599999999999997999999999960
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.33 E-value=0.42 Score=20.97 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 806687179998789999998395
Q 000570 826 PICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 826 piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
=+++|+|+-|+|||||+..|.+-.
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999799980999999997399
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.11 E-value=0.38 Score=21.30 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 58980668717999878999999839
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
-+--+++|+|..|+|||||+..|.+-
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 49989999999998499999998614
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.04 E-value=0.43 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 13589806687179998789999998395
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
.-.+.-+++|+|+-|+|||||+..|.+-.
T Consensus 28 ~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 88799899999999982999999997589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=82.68 E-value=0.34 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 898066871799987899999983
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
.+-.|+|+|..++|||||..+|..
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 632899989999989999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.4 Score=21.09 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+|+|+|+|.+++||||+...|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 93999979999998999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.58 E-value=0.5 Score=20.38 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 898066871799987899999983
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
..|+|+|+|.+++||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 972899989999998999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.54 E-value=0.47 Score=20.59 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+|||+|.|++|+||||+...|..
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899779998898999999999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=82.47 E-value=0.44 Score=20.80 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 358980668717999878999999839
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
-.+-=+++|+|+.|+|||||+..|.+-
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 28 VPAGQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp ECSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 869979999899989888999987588
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=82.47 E-value=0.41 Score=21.00 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 013589806687179998789999998395
Q 000570 820 EENLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 820 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
-.-.+--+++|+|+-|+|||||+..|.+-.
T Consensus 27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 788899799999999985999999996788
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.15 E-value=0.51 Score=20.33 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 898066871799987899999983
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
.+.+|+|.|..++|||||...|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 988999789887899999999999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=82.10 E-value=0.37 Score=21.38 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 101358980668717999878999999839
Q 000570 819 AEENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 819 ~~~~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
+-+--+--+++|+|+-|+|||||+..|.+-
T Consensus 19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889948989999989998099999999488
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=81.86 E-value=0.44 Score=20.77 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 1358980668717999878999999839
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
.-.+-=+++|+|+.|+|||||+..|.+-
T Consensus 24 ~i~~GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 24 QARAGDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8869979999989998299999999747
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=81.68 E-value=0.63 Score=19.60 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=18.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 5898066871799987899999983
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
+|. |+|-|-.|+||||+.-.|-.
T Consensus 2 Mr~--IaisgKGGVGKTT~a~NLA~ 24 (289)
T d2afhe1 2 MRQ--CAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEE--EEEEECTTSSHHHHHHHHHH
T ss_pred CCE--EEEECCCCCCHHHHHHHHHH
T ss_conf 628--99989998779999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.05 E-value=0.26 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 5898066871799987899999983
Q 000570 823 LRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 823 ~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
.+.|||+|.|..++|||||...|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9888999989997809999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.88 E-value=0.59 Score=19.83 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 98066871799987899999983
Q 000570 825 SPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 825 ~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
|-+|+|.|..|+||||++..|..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899989999898999999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=80.59 E-value=0.34 Score=21.61 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 13589806687179998789999998395
Q 000570 821 ENLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 821 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
.-..-=+++|+|+.|+|||||+..|.+-.
T Consensus 22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 22 KVESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98799899999899982999999996476
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.56 E-value=0.66 Score=19.44 Aligned_cols=23 Identities=35% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 8980668717999878999999839
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
|+ |+|+|..++|||||+..|+..
T Consensus 2 rp--Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 2 RP--IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CC--EEEECCTTSSHHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 76--999899999989999999974
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.50 E-value=0.53 Score=20.16 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 3589806687179998789999998395
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRGTN 849 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~t~ 849 (1415)
-.+--+++|+|+-|+|||||+..|.+-.
T Consensus 27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 27 VNKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8899799999999984999999997797
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.38 E-value=0.99 Score=18.14 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 8980668717999878999999839
Q 000570 824 RSPICCIMGHVDTGKTKLLDCIRGT 848 (1415)
Q Consensus 824 R~piV~IlGhvdsGKTTLLd~L~~t 848 (1415)
+.|.+.+.|..|+|||||+..|...
T Consensus 34 ~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 34 KLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9985999889987755899999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=0.62 Score=19.66 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 35898066871799987899999983
Q 000570 822 NLRSPICCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 822 ~~R~piV~IlGhvdsGKTTLLd~L~~ 847 (1415)
.-++.+|+|.|.+++|||||...|..
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 89988999968999987689999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=80.11 E-value=1 Score=18.07 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 66871799987899999983
Q 000570 828 CCIMGHVDTGKTKLLDCIRG 847 (1415)
Q Consensus 828 V~IlGhvdsGKTTLLd~L~~ 847 (1415)
|.++|.+|+|||+|+.+|..
T Consensus 31 vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988998529999999987
|