Citrus Sinensis ID: 000576
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1412 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.992 | 0.976 | 0.728 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.998 | 0.990 | 0.704 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.987 | 0.971 | 0.728 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.985 | 0.954 | 0.698 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.954 | 0.697 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.994 | 0.972 | 0.691 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.990 | 0.964 | 0.679 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.987 | 0.950 | 0.681 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.989 | 0.954 | 0.684 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.968 | 0.690 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2172 bits (5627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1420 (72%), Positives = 1205/1420 (84%), Gaps = 19/1420 (1%)
Query: 9 TTTSLR-RSASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSG 67
T SLR S S W + FSRSSR DE DDEEALKWAALEKLPT++RLRKGLL G
Sbjct: 18 TRGSLRANSNSIWRNNGVEIFSRSSR-DE-DDEEALKWAALEKLPTFDRLRKGLLFGSQG 75
Query: 68 HGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKV 127
E+D+++LG QER+ L+++LVKV D DNEKFLLKLKNR DRVGI +P IEVR+EHL +
Sbjct: 76 AAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNI 135
Query: 128 EAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGP 187
+A+AYVGSR+LPTF NF N +E LLNSL+ILSSRK+ +TILK +SGII+P RMTLLLGP
Sbjct: 136 DADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGP 195
Query: 188 PASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRET 247
P+SGKTTLLLALAGKLD +L++ G+V+YNGH + EFVPQRTAAYISQHD+HIGEMTVRET
Sbjct: 196 PSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRET 255
Query: 248 LAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL 307
L FSARCQGVGSR+EML EL+RREKAA IKPD D+D++MKAAATEGQEA+VVTDY+LKIL
Sbjct: 256 LEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKIL 315
Query: 308 GLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSL 367
GLD+CADTMVGD+MIRGISGGQ+KRVTTGEMLVGP++A FMDEISTGLDSSTT+ IVNSL
Sbjct: 316 GLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSL 375
Query: 368 RQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPER 427
RQ + IL+GT +ISLLQPAPE Y+LFDDIIL+SDG IVYQGPR+ VLEFFE MGFKCP+R
Sbjct: 376 RQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQR 435
Query: 428 KGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTK 487
KGVADFLQEVTS+KDQ+QYW+ + EPYRF+T KEFA+A+QSF VG+ LGDEL PFDKTK
Sbjct: 436 KGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTK 495
Query: 488 SHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKM 547
HPAALT +KYG+GKKE LK C RELLLMKRNSFVY FK QLT +AL+TMTLFFRT+M
Sbjct: 496 CHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEM 555
Query: 548 HRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWI 607
RD+ DG IYAGA FF++IMIMFNGM+E++MTI KLP+FYKQRDL F+PSWAYA P+WI
Sbjct: 556 PRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWI 615
Query: 608 PKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVV 667
KIP++ VEV +WV TYYVIGFDPN RF +Q+LLL+ VNQMAS +FR I A GR + V
Sbjct: 616 LKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGV 675
Query: 668 ANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILP 727
A+TFG+FALLL +ALGGFVL+R+D+KSWWIW YW SP+MY+ N+I+VNEF G W I+P
Sbjct: 676 ASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVP 735
Query: 728 NTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL------------ 775
E LG V++SRGFF ++YWYW+GVGAL+GF ++FN ++LAL++L
Sbjct: 736 GGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPE 795
Query: 776 ---NWSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKL 832
N ++ + +S+ ++I+E+ Q ++GMVLPFEPHS+TFDDV YSVDMPQEMK
Sbjct: 796 DGENAENGEVSSQITSTDGGDSISES-QNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKE 854
Query: 833 RGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892
+G +DRLVLL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ G I ISGYP
Sbjct: 855 QGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYP 914
Query: 893 KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN 952
KKQETFARISGYCEQNDIHSP VTVYESL+YSAWLRL +VD KTRKMF++EVMELVEL
Sbjct: 915 KKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELG 974
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 975 PLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1034
Query: 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKI 1072
VDTGRTVVCTIHQPSIDIFEAFDELFL+KRGGQEIYVGPLGRHS HLIKYFE NPGV+KI
Sbjct: 1035 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKI 1094
Query: 1073 KNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDT 1132
K GYNPATWMLEVT+ +QE LGIDF ++YK+S+LYRRNKALI +L P PGSKDLHF+T
Sbjct: 1095 KEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFET 1154
Query: 1133 QYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLF 1192
QY+QSF+TQC+ACLWKQ WSYWRNP YTAVRF+ TT +L FG MFWD+GTK++K QDL
Sbjct: 1155 QYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLL 1214
Query: 1193 NAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFV 1252
NAMGSMY AVLF+G+ NA +VQPVVAIERTVFYRERAAGMYS + YAF QV IEIPYIFV
Sbjct: 1215 NAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFV 1274
Query: 1253 QAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGF 1312
Q+V YG+IVYAM+ FEW KFFWYLF MFFT LYFTFYGMM V++TPN ++++IV+ F
Sbjct: 1275 QSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFF 1334
Query: 1313 YALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLESGETVKHFLR 1372
Y +WN+FSGFIIPRPR+P+WW+WYYWA P+AWTLYGL+ASQ+GD + +L ETV+ FLR
Sbjct: 1335 YGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLR 1394
Query: 1373 SYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
YFGFKHDFLGVVA V+ A+ +FAF F IK NFQRR
Sbjct: 1395 RYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2132 bits (5525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1425 (70%), Positives = 1191/1425 (83%), Gaps = 15/1425 (1%)
Query: 1 MESGDIYRTTTSLRRSASRWGSAS-EGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
ME ++ + S+RR++S W S FSRSSR E DDEEAL+WAALEKLPT++RLRK
Sbjct: 1 MEGTSFHQASNSMRRNSSVWKKDSGREIFSRSSR--EEDDEEALRWAALEKLPTFDRLRK 58
Query: 60 GLLSTPSGHG--NEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPE 117
G+L+ G NEID+ LG Q+ + L+++L+KV D ++EK L KLK R DRVGI +P
Sbjct: 59 GILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPT 118
Query: 118 IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIR 177
IEVRF+HLKVEAE +VG RALPTF NF +N + LN+L+++ +RKK TIL VSGI++
Sbjct: 119 IEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVK 178
Query: 178 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDV 237
PGRM LLLGPP+SGKTTLLLALAGKLD L+ GRVTYNGH M+EFVPQRTAAYI Q+DV
Sbjct: 179 PGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDV 238
Query: 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEAS 297
HIGEMTVRET A++AR QGVGSRY+MLTELARREK A IKPDPD+D+FMKA +T G++ +
Sbjct: 239 HIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTN 298
Query: 298 VVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDS 357
V+TDYILKILGL+VCADTMVGD+M+RGISGGQ+KRVTTGEMLVGP++A FMDEISTGLDS
Sbjct: 299 VMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDS 358
Query: 358 STTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFF 417
STT+QIVNSLR ++HI GT LISLLQPAPE ++LFDDIILI++G+I+Y+GPR+HV+EFF
Sbjct: 359 STTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFF 418
Query: 418 EFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGD 477
E MGFKCP RKGVADFLQEVTS+KDQ QYWA ++EPYRF+ V+EFA+AFQSF VG+ +GD
Sbjct: 419 ETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGD 478
Query: 478 ELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALV 537
EL +PFDKTKSHPAALTTKKYGVG KE +K SRE LLMKRNSFVY+FK QL +A +
Sbjct: 479 ELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFL 538
Query: 538 TMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYP 597
TMTLFFRT+M + + DG +Y GA FFI++M+MFNGM+E+SMTIAKLP+FYKQRDL FYP
Sbjct: 539 TMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYP 598
Query: 598 SWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRL 657
+W Y+ P W+ KIPISF+E A+ F TYYVIGFDPN GR F+QY+LL+ +NQMASALF++
Sbjct: 599 AWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKM 658
Query: 658 IAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEF 717
+AA GRN++VANTFGAFA+L+ +ALGG VL+R+DIK WWIW YW SP+MY QNAI+ NEF
Sbjct: 659 VAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEF 718
Query: 718 LGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNW 777
GHSW + + N++E LGV L+SRGF +YWYW+G GALLGF++LFN GF LAL+FLN
Sbjct: 719 FGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNS 778
Query: 778 -------SADDIRRRDSSSQSL--ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQ 828
A++ ++ QS E + EA K+RGMVLPFEPHS+TFD+V YSVDMPQ
Sbjct: 779 LGKPQAVIAEEPASDETELQSARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQ 838
Query: 829 EMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITI 888
EM +G +DRLVLL V+GAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNITI
Sbjct: 839 EMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITI 898
Query: 889 SGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
SGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSAWLRL EVD RK+FIEEVMEL
Sbjct: 899 SGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMEL 958
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
VEL LRQALVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT
Sbjct: 959 VELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1018
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPG 1068
VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG+EIYVGPLG S+HLI YFE G
Sbjct: 1019 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQG 1078
Query: 1069 VSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDL 1128
++KI GYNPATWMLEV++ SQE ALG+DFA +YK+SELY+RNK LIK+LS+PAPGSKDL
Sbjct: 1079 INKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDL 1138
Query: 1129 HFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQ 1188
+F TQY+QSF TQCMA LWKQ WSYWRNPPYTAVRFL T +L FG MFWD+G K +
Sbjct: 1139 YFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTR 1198
Query: 1189 QDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIP 1248
QDL NAMGSMYTAVLF+G+ NA +VQPVV +ERTVFYRE+AAGMYS M YAFAQV IEIP
Sbjct: 1199 QDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIP 1258
Query: 1249 YIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIV 1308
Y+ VQA+ YGLIVYAM+ FEWTA KFFWYLFFM+ +FL FTFYGMMAV++TPNHHI+++V
Sbjct: 1259 YVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVV 1318
Query: 1309 SFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGD-KEDRLESGETV 1367
S FY +WN+FSGF+IPRP +P+WW+WYYW CP+AWTLYGLIASQ+GD E +S +V
Sbjct: 1319 SSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSV 1378
Query: 1368 KHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
K F+R ++G++ FLGVVA + V FP+LFA +F +GIK NFQ+R
Sbjct: 1379 KQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2076 bits (5378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1409 (72%), Positives = 1201/1409 (85%), Gaps = 14/1409 (0%)
Query: 16 SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGNEIDVD 75
S S W + FSRS+R DE DDEEALKWAALEKLPTY+RLRKG+L G E+DVD
Sbjct: 30 SNSIWRNNGAEVFSRSAR-DE-DDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVD 87
Query: 76 NLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGS 135
+ G+ ER+ L+++LVKV D DNEKFLLKLKNR DRVGI P IEVRFEHL ++A+AYVGS
Sbjct: 88 DSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGS 147
Query: 136 RALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTL 195
RALPTF NF +N +EGLL+S++IL S+K+ +TILK VSGI++P RMTLLLGPP SGKTTL
Sbjct: 148 RALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTL 207
Query: 196 LLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 255
LLALAGKLDS+L++ G+VTYNGH + EFVPQRTAAYISQHD+HIGEMTVRETL FSARCQ
Sbjct: 208 LLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQ 267
Query: 256 GVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315
GVGSRYEML EL+RREKAA IKPD D+D+FMKAA+TEGQEA VVTDYILKILGLD+CADT
Sbjct: 268 GVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADT 327
Query: 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR 375
MVGD+MIRGISGGQ+KRVTTGEM+VGP++A FMDEISTGLDSSTT+ IVNSL+Q + I++
Sbjct: 328 MVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMK 387
Query: 376 GTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435
GT LISLLQPAPE Y+LFDDIIL+SDG IVY+GPRE VLEFFE MGFKCPERKG ADFLQ
Sbjct: 388 GTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQ 447
Query: 436 EVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTT 495
EVTS+KDQ+QYW ++EPYRF+T KEFA+A+QSF VG+ + DEL FDK+KSHPAALTT
Sbjct: 448 EVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTT 507
Query: 496 KKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555
+KYG+GK++ LK C RELLLM+RNSFVY FK FQL IAL+TMT+FFRTKM RDS DG
Sbjct: 508 QKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDG 567
Query: 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFV 615
IY+GA FF++IMIMFNG++E+ MT+ KLP+FYKQRD FYPSWAYA P+WI KIP++F
Sbjct: 568 GIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFA 627
Query: 616 EVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFA 675
EV +WVF TYYV+GFDPN GRFF+Q+LLLL VNQMASALFR IAA GR + VA+TFGAFA
Sbjct: 628 EVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFA 687
Query: 676 LLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGV 735
LLL +ALGGF+L R D+K WWIW YW SPLMY+ NAI+VNEF G W+ I+ TEPLG
Sbjct: 688 LLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGA 747
Query: 736 EVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN-------WSADDIRRRDSS 788
V+++RGFF D+YWYW+GVGAL GFI++FNI +++AL++LN +D+ +S
Sbjct: 748 AVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNESE 807
Query: 789 SQSLETITE----ANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLN 844
S T T+ A++ K++GMVLPF+PHS+TFD+V YSVDMP EM+ G D+RLVLL
Sbjct: 808 SSPQITSTQEGDSASENKKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLK 867
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGY 904
SVSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ G+I ISGYPKKQ+TFARISGY
Sbjct: 868 SVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGY 927
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964
CEQNDIHSP VTV+ESL+YSAWLRL +V+ + R MF+EEVM+LVEL LR ALVGLPGV
Sbjct: 928 CEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGV 987
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIH
Sbjct: 988 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 1047
Query: 1025 QPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLE 1084
QPSIDIFEAFDELFL+KRGGQEIYVGPLGR S HLIKYFE PGVSKI GYNPATWMLE
Sbjct: 1048 QPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLE 1107
Query: 1085 VTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMA 1144
VT+ SQE ALG+DF D+YK S+LYRRNKALI +LS P PG+ DLHFD++++Q F+TQCMA
Sbjct: 1108 VTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMA 1167
Query: 1145 CLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLF 1204
CLWKQ WSYWRNP YTAVR + TT +L FG MFWD+GTK+++ QDL NAMGSMY AVLF
Sbjct: 1168 CLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLF 1227
Query: 1205 IGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAM 1264
+G+ N+ +VQPVV++ERTVFYRE+AAGMYS + YAFAQVLIEIPYIFVQA YGLIVY+M
Sbjct: 1228 LGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSM 1287
Query: 1265 MQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFII 1324
+ FEWT AKFFW FFMFFTFLYFTF+GMM V++TPN ++++IV+ FY +WN+FSGFI+
Sbjct: 1288 IGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIV 1347
Query: 1325 PRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRL-ESGETVKHFLRSYFGFKHDFLG 1383
PRPRIPIWW+WYYW CP+AWTLYGL+ASQ+GD +D L + +TV+ FLRS FGFKHDFLG
Sbjct: 1348 PRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLG 1407
Query: 1384 VVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
VVA V+VAF ++FAF F LGIK NFQRR
Sbjct: 1408 VVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2052 bits (5316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1006/1441 (69%), Positives = 1159/1441 (80%), Gaps = 50/1441 (3%)
Query: 16 SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLL-------STPSGH 68
S S W + FSRSSR E DDEEAL+WAALEKLPTY+R+R+ +L + G
Sbjct: 23 SGSMWRRGDD-VFSRSSR--EEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGG 79
Query: 69 GNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVE 128
+DV LG +ER+ L+++LV+V D DNEKFLLKLK+R DRVGI MP IEVRFEHL+ E
Sbjct: 80 KGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAE 139
Query: 129 AEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPP 188
AE VG+ LPT N N +E N+L IL +RK+ + +L VSGII+P RMTLLLGPP
Sbjct: 140 AEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPP 199
Query: 189 ASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 248
SGKTTLLLALAG+L L+ G+VTYNGH M+EFVP+RTAAYISQHD+HIGEMTVRETL
Sbjct: 200 GSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETL 259
Query: 249 AFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILG 308
AFSARCQGVGSR++MLTEL+RREKAA IKPD D+D FMKAAA GQEA+V TDYILKILG
Sbjct: 260 AFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILG 319
Query: 309 LDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLR 368
L++CADTMVGDEM+RGISGGQRKRVTTGEMLVGPA+A FMDEISTGLDSSTTFQIVNSLR
Sbjct: 320 LEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLR 379
Query: 369 QFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERK 428
Q +HIL GT +ISLLQPAPE Y+LFDDIIL+SDGQIVYQGPRE VLEFFE MGFKCP+RK
Sbjct: 380 QTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRK 439
Query: 429 GVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKS 488
GVADFLQEVTS+KDQ QYWA ++PYRFVTVKEF AFQSF G+ + +EL +PFDK+KS
Sbjct: 440 GVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKS 499
Query: 489 HPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMH 548
HPAAL T +YG KE LKA RE+LLMKRNSFVY F+ FQL ++L+ MTLFFRTKM
Sbjct: 500 HPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMK 559
Query: 549 RDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIP 608
RDSVT G IY GA FF ++MIMFNG +E+++T+ KLP+F+KQRDL FYP+W+Y P+WI
Sbjct: 560 RDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWIL 619
Query: 609 KIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVA 668
KIPI+F+EV +VF TYYVIGFD N G FF+QYLL+L +NQMA +LFR I RN++VA
Sbjct: 620 KIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVA 679
Query: 669 NTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPN 728
N F +F LL+ LGGF+L RE +K WWIW YW SP+MYAQNAI VNE +GHSW KI+ +
Sbjct: 680 NVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNS 739
Query: 729 --TTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL----------- 775
+ E LGV+VL+SRG F ++ WYW+G GA++GF ILFN F LAL++L
Sbjct: 740 SASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVS 799
Query: 776 -------------------NWSADDIRR-----RDSSSQSLETITEANQPKRRGMVLPFE 811
+ S+ RR ++ S ++ TE Q RGMVLPF
Sbjct: 800 EEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQ---RGMVLPFT 856
Query: 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
P SL+FD+V YSVDMPQEMK +GV DDRL LL VSG+FRPGVLTALMGV+GAGKTTLMD
Sbjct: 857 PLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 916
Query: 872 VLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
VLAGRKT GY+ G+I ISGYPKKQETFAR+SGYCEQNDIHSPQVTVYESLL+SAWLRL
Sbjct: 917 VLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
+VDS TRKMFIEEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 977 DVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1036
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIY GP
Sbjct: 1037 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGP 1096
Query: 1052 LGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRN 1111
LG HSS LIKYFE PGVSKIK+GYNPATWMLEVT+ QE ALG+DF+DIYK SELY+RN
Sbjct: 1097 LGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRN 1156
Query: 1112 KALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITS 1171
KALIKDLS+PAP S DL+F TQY+QS TQCMACLWKQ SYWRNPPY AVRF TT+ +
Sbjct: 1157 KALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIA 1216
Query: 1172 LTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAG 1231
L FG +FWD+G K+TK QDLFNAMGSMY AVLFIG++N +VQPVVA+ERTVFYRERAAG
Sbjct: 1217 LLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAG 1276
Query: 1232 MYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFY 1291
MYS YAF QV+IEIPY VQA YG+IVYAM+ FEWTAAKFFWYLFFM FT LYFTFY
Sbjct: 1277 MYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFY 1336
Query: 1292 GMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIA 1351
GMMAV LTPN+HI++IVS FYA+WN+FSGF+IPRPR+PIWW+WY WACP+AWTLYGL+
Sbjct: 1337 GMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV 1396
Query: 1352 SQYGDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQR 1411
SQ+GD E +E G VK F+ +YFGFKH +LG VA VV AF LFA +FG I NFQ+
Sbjct: 1397 SQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQK 1456
Query: 1412 R 1412
R
Sbjct: 1457 R 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2050 bits (5310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1005/1441 (69%), Positives = 1158/1441 (80%), Gaps = 50/1441 (3%)
Query: 16 SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLL-------STPSGH 68
S S W + FSRSSR E DDEEAL+WAALEKLPTY+R+R+ +L + G
Sbjct: 23 SGSMWRRGDD-VFSRSSR--EEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGG 79
Query: 69 GNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVE 128
+DV LG +ER+ L+++LV+V D DNEKFLLKLK+R DRVGI MP IEVRFEHL+ E
Sbjct: 80 KGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAE 139
Query: 129 AEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPP 188
AE VG+ LPT N N +E N+L IL +RK+ + +L VSGII+P RMTLLLGPP
Sbjct: 140 AEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPP 199
Query: 189 ASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 248
SGKTTLLLALAG+L L+ G+VTYNGH M+EFVP+RTAAYISQHD+HIGEMTVRETL
Sbjct: 200 GSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETL 259
Query: 249 AFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILG 308
AFSARCQGVGSR++MLTEL+RREKAA IKPD D+D FMKAAA GQEA+V TDYILKILG
Sbjct: 260 AFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILG 319
Query: 309 LDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLR 368
L++CADTMVGDEM+RGISGGQRKRVTTGEMLVGPA+A FMDEISTGLDSSTTFQIVNSLR
Sbjct: 320 LEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLR 379
Query: 369 QFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERK 428
Q +HIL GT +ISLLQPAPE Y+LFDDIIL+SDGQIVYQGPRE VLEFFE GFKCP+RK
Sbjct: 380 QTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRK 439
Query: 429 GVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKS 488
GVADFLQEVTS+KDQ QYWA ++PYRFVTVKEF AFQSF G+ + +EL +PFDK+KS
Sbjct: 440 GVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKS 499
Query: 489 HPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMH 548
HPAAL T +YG KE LKA RE+LLMKRNSFVY F+ FQL ++L+ MTLFFRTKM
Sbjct: 500 HPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMK 559
Query: 549 RDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIP 608
RDSVT G IY GA FF ++MIMFNG +E+++T+ KLP+F+KQRDL FYP+W+Y P+WI
Sbjct: 560 RDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWIL 619
Query: 609 KIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVA 668
KIPI+F+EV +VF TYYVIGFD N G FF+QYLL+L +NQMA +LFR I RN++VA
Sbjct: 620 KIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVA 679
Query: 669 NTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPN 728
N F +F LL+ LGGF+L RE +K WWIW YW SP+MYAQNAI VNE +GHSW KI+ +
Sbjct: 680 NVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNS 739
Query: 729 --TTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL----------- 775
+ E LGV+VL+SRG F ++ WYW+G GA++GF ILFN F LAL++L
Sbjct: 740 SASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVS 799
Query: 776 -------------------NWSADDIRR-----RDSSSQSLETITEANQPKRRGMVLPFE 811
+ S+ RR ++ S ++ TE Q RGMVLPF
Sbjct: 800 EEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQ---RGMVLPFT 856
Query: 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
P SL+FD+V YSVDMPQEMK +GV DDRL LL VSG+FRPGVLTALMGV+GAGKTTLMD
Sbjct: 857 PLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 916
Query: 872 VLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
VLAGRKT GY+ G+I ISGYPKKQETFAR+SGYCEQNDIHSPQVTVYESLL+SAWLRL
Sbjct: 917 VLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
+VDS TRKMFIEEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 977 DVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1036
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIY GP
Sbjct: 1037 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGP 1096
Query: 1052 LGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRN 1111
LG HSS LIKYFE PGVSKIK+GYNPATWMLEVT+ QE ALG+DF+DIYK SELY+RN
Sbjct: 1097 LGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRN 1156
Query: 1112 KALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITS 1171
KALIKDLS+PAP S DL+F TQY+QS TQCMACLWKQ SYWRNPPY AVRF TT+ +
Sbjct: 1157 KALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIA 1216
Query: 1172 LTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAG 1231
L FG +FWD+G K+TK QDLFNAMGSMY AVLFIG++N +VQPVVA+ERTVFYRERAAG
Sbjct: 1217 LLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAG 1276
Query: 1232 MYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFY 1291
MYS YAF QV+IEIPY VQA YG+IVYAM+ FEWTAAKFFWYLFFM FT LYFTFY
Sbjct: 1277 MYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFY 1336
Query: 1292 GMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIA 1351
GMMAV LTPN+HI++IVS FYA+WN+FSGF+IPRPR+PIWW+WY WACP+AWTLYGL+
Sbjct: 1337 GMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV 1396
Query: 1352 SQYGDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQR 1411
SQ+GD E +E G VK F+ +YFGFKH +LG VA VV AF LFA +FG I NFQ+
Sbjct: 1397 SQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQK 1456
Query: 1412 R 1412
R
Sbjct: 1457 R 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2028 bits (5254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 998/1443 (69%), Positives = 1190/1443 (82%), Gaps = 39/1443 (2%)
Query: 4 GDIYRTTTSLRRSASRW--GSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGL 61
G + S+RR+AS W S AF RS R E DDEEALKWAA+EKLPTY+R+RKG+
Sbjct: 7 GSVASGGGSVRRTASSWRGTSGRSDAFGRSVR--EEDDEEALKWAAIEKLPTYDRMRKGI 64
Query: 62 LSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVR 121
L+ +G E+D+ LGLQER+ LI++LV+ + DNE+FLLKL++R +RVGI P IEVR
Sbjct: 65 LT--AGGVEEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVR 122
Query: 122 FEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRM 181
FE+L ++AEAYVG+R +PTF NF +N I +L+++ I+SS K+ I+IL +SGIIRPGRM
Sbjct: 123 FENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRM 182
Query: 182 TLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 241
+LLLGPP SGKT+LLLALAGKLDS+L++ GRVTYNGH+MDEFVPQRT+AYI QHD+HIGE
Sbjct: 183 SLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGE 242
Query: 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTD 301
MTVRETLAFSARCQGVG+RY+MLTEL+RREK A IKPDPD+DV+MKA + EGQE SVVTD
Sbjct: 243 MTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTD 301
Query: 302 YILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTF 361
YILKILGL++CADTMVGD MIRGISGGQ+KRVTTGEMLVGPA+A FMDEISTGLDSSTT+
Sbjct: 302 YILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTY 361
Query: 362 QIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMG 421
QIVNSLRQ +HIL GT LI+LLQPAPE YDLFDDI+L+S+GQIVYQGPRE++LEFFE MG
Sbjct: 362 QIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMG 421
Query: 422 FKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGI 481
FKCPERKGVADFLQEVTSRKDQ QYW ++EPYR+++V +F++AF+ F VG+ LG EL +
Sbjct: 422 FKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRV 481
Query: 482 PFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTL 541
PFD+T++HPAALTT +YG+ K E KAC SRE LLMKRNSFVY FK+ QL + + MT+
Sbjct: 482 PFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTV 541
Query: 542 FFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAY 601
F RTKMHR SV DG I+ GA F ++ +FNG AE++M+IAKLPIFYKQRDL FYPSWAY
Sbjct: 542 FLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAY 601
Query: 602 AFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAAT 661
A PTW+ KIPISF+E AVW+ TYYV+GFDPN RFFR Y+LL+ ++QMAS LFRL+AA
Sbjct: 602 ALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAAL 661
Query: 662 GRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHS 721
GR +VVA+TFG+FA L+L LGGF+++RE+IK WWIW YW SPLMYAQNAI VNEFLGHS
Sbjct: 662 GREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHS 721
Query: 722 WRKILPNT--TEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN--- 776
W K++ T + LGV+VL+ RG F D+ WYW+GVGALLG+I+LFNI F L L +L+
Sbjct: 722 WNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLG 781
Query: 777 -----WSADDIRRR--DSSSQSLETIT----EANQP---------------KRRGMVLPF 810
S +++R + + + +++E +T N P ++RGMVLPF
Sbjct: 782 KGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPF 841
Query: 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM 870
P S+TFD++ YSVDMPQEMK +GV +DRL+LL VSGAFRPGVLTALMGV+GAGKTTLM
Sbjct: 842 TPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLM 901
Query: 871 DVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
DVLAGRKT GY+ G+I+ISGYPKKQETFARI+GYCEQNDIHSP VTVYESLLYSAWLRL
Sbjct: 902 DVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLP 961
Query: 931 PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990
EVDS+ RKMF+EEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 962 SEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1021
Query: 991 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVG
Sbjct: 1022 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1081
Query: 1051 PLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRR 1110
PLG +S HLI YFEG GV KIK+GYNPATWMLEVT+ +QE LGI+FA++Y++S+LY+R
Sbjct: 1082 PLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQR 1141
Query: 1111 NKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTIT 1170
NK LI +LS P PGS DLHF TQ++Q FFTQCMACLWKQ SYWRNP YTA R TT+
Sbjct: 1142 NKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVI 1201
Query: 1171 SLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAA 1230
+L FG +F ++G K+ K+ DLFN++GSMY AVLFIGI N VQP+V +ERTVFYRE+AA
Sbjct: 1202 ALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAA 1261
Query: 1231 GMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTF 1290
GMYS + YAFAQVLIEIP+IF+Q V YGLIVY+++ F+WT KFFWY+FFMFFTF+YFTF
Sbjct: 1262 GMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTF 1321
Query: 1291 YGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLI 1350
YGMMAV++TPN I+AIVS FY +WN+F+GF+IPRPRIPIWW+WY WACP+AWTLYGL+
Sbjct: 1322 YGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLV 1381
Query: 1351 ASQYGD-KEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNF 1409
ASQYGD LE GE V+ ++R YFGF+HD+LG VA VV F LFAFVF IK NF
Sbjct: 1382 ASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNF 1441
Query: 1410 QRR 1412
QRR
Sbjct: 1442 QRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2026 bits (5249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1443 (67%), Positives = 1165/1443 (80%), Gaps = 44/1443 (3%)
Query: 12 SLRRSASRWGSASEGAFSRSSRR--DEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHG 69
SLRR S W S + FSRSS R DE DDEEAL+WAALE+LPTY+R+R+G+L+ S G
Sbjct: 10 SLRREGSMWRSGGD-VFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 70 N------EIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFE 123
E+DV LG +E + LI++LV+ D D+E+FLLKL+ R DRVGI P IEVRFE
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 124 HLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTL 183
+L+VEA+ +VG+R LPT N N +E + N+L+IL ++K+ +T+L VSGII+P RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 184 LLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 243
LLGPP SGKTTLLLALAGKLD L++ G+VTYNGH M EFVP+RTAAYISQHD+HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYI 303
VRETLAFSARCQGVG+RYEMLTELARREKAA IKPD D+D++MKA+A GQE+SVVTDYI
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 304 LKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQI 363
LKILGLD+CADT+VG+EM+RGISGGQRKRVTTGEMLVGPA+A FMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 364 VNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFK 423
VNSLRQ IHIL GT +ISLLQPAPE Y+LFDDIIL+SDGQ+VYQGPREHVLEFFEFMGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 424 CPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPF 483
CP RKGVADFLQEVTSRKDQ QYW ++ PYRFV VK+FADAF+SF VG+ + +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 484 DKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFF 543
D+T+SHPAAL T KYGV +KE LKA RELLLMKRN+F+Y FK LT +AL+ MT FF
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 544 RTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAF 603
RT M D G+IY GA +F + +MFNG AE++MT+ KLP+F+KQRDL F+P+WAY
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 604 PTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGR 663
P+WI +IPI+F+EV V+VF TYYVIGFDP+ RFF+QYLLLL +NQM+SALFR IA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 664 NLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWR 723
++VV++TFG +LL ALGGF+L R D+K WWIW YW SPL YAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 724 KILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN------- 776
+ILP LGV VL+SRG FT++ WYW+G+GALLG+ +LFN+ + +ALS L+
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 777 -WSADDIRRR---------------DSSSQSLETITEANQ----------PKRRGMVLPF 810
S D ++ + S Q LE A+Q R+GMVLPF
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPF 847
Query: 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM 870
P S++F+DV YSVDMP+ MK +G+ +DRL+LL VSG+FRPGVLTALMGV+GAGKTTLM
Sbjct: 848 APLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLM 907
Query: 871 DVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
DVLAGRKT GY+ G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL++SAWLRL
Sbjct: 908 DVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLP 967
Query: 931 PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990
EVDS+ RKMFIEEVM+LVEL LR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 968 SEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1027
Query: 991 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
DEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVG
Sbjct: 1028 DEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1087
Query: 1051 PLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRR 1110
P+G++SS LI+YFEG GVS+IK+GYNPATWMLEVTS +QE LG+DF++IY+ SELY+R
Sbjct: 1088 PVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQR 1147
Query: 1111 NKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTIT 1170
NK LI++LS P PGS DL+F TQY++SF TQC+ACLWKQ WSYWRNP YTAVR L T +
Sbjct: 1148 NKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVI 1207
Query: 1171 SLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAA 1230
+L FG MFW++GT+ KQQDLFNAMGSMY AVL+IG+ N+ +VQPVV +ERTVFYRERAA
Sbjct: 1208 ALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAA 1267
Query: 1231 GMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTF 1290
GMYS YAF QV IE+PYI VQ + YG++VY+M+ FEWT AKF WYLFFM+FT LYFTF
Sbjct: 1268 GMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTF 1327
Query: 1291 YGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLI 1350
YGMMAV LTPN I+AI+S FY +WN+FSG++IPRP+IP+WW+WY W CP+AWTLYGL+
Sbjct: 1328 YGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLV 1387
Query: 1351 ASQYGDKEDRLESG-ETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNF 1409
ASQ+GD + LE TV F+ YFGF H+FL VVA+V V F + FAF+F I NF
Sbjct: 1388 ASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNF 1447
Query: 1410 QRR 1412
QRR
Sbjct: 1448 QRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2013 bits (5216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1446 (68%), Positives = 1158/1446 (80%), Gaps = 51/1446 (3%)
Query: 17 ASRWGSAS-EGAFSRSSR------RDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHG 69
AS W SA GAFSRSS R E DDEEAL+WAAL+KLPTY+R+R +L G G
Sbjct: 24 ASMWLSADGNGAFSRSSSSSSRRMRGEEDDEEALRWAALQKLPTYDRVRAAILPMVEGEG 83
Query: 70 NE-----------IDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEI 118
E +DV +LG ER+ L+++LV+V D DNE+FLLKLK R RVGI MP I
Sbjct: 84 GEAGGGGGGRRVVVDVHSLGPHERRALLERLVRVADDDNERFLLKLKERISRVGIDMPTI 143
Query: 119 EVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRP 178
EVRFEHL+VEAE VG+ +PT N N IE N+L IL +RK+ + IL +SGII+P
Sbjct: 144 EVRFEHLEVEAEVRVGNSGIPTVLNSITNKIEEAANALGILPTRKQTLRILHDISGIIKP 203
Query: 179 GRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVH 238
RMTLLLGPP SGKTT LLALAG+L L+ G+VTYNGH M++FVPQRTAAYISQHD+H
Sbjct: 204 KRMTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLH 262
Query: 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASV 298
IGEMTVRETL+FSARCQGVGSR++MLTEL RREKAA IKPD D+D FMKA+A EGQE+++
Sbjct: 263 IGEMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNL 322
Query: 299 VTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSS 358
+TDYILKILGL++CADTMVGD+M+RGISGGQRKRVTTGEMLVGPA AFFMDEISTGLDSS
Sbjct: 323 ITDYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSS 382
Query: 359 TTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFE 418
TTFQIV SLRQ IHIL GT +ISLLQPAPE YDLFDDIIL+SDG IVYQGPRE+VLEFFE
Sbjct: 383 TTFQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFE 442
Query: 419 FMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDE 478
MGFKCPERKGVADFLQEVTSRKDQ+QYWA ++PYR+V +KEFA AFQSF G+ + +E
Sbjct: 443 LMGFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANE 502
Query: 479 LGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVT 538
L PFDK+KSHPAALTT +YGV E LKA RELLL+KRNSFVY F+ QL T++ +
Sbjct: 503 LATPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMA 562
Query: 539 MTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPS 598
MT+FFRTKMHRDSV DGVI+ GA FF ++MIM NG++E+ +TI KLP+F+KQRDL F+P+
Sbjct: 563 MTVFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPA 622
Query: 599 WAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLI 658
W Y P+WI K P+SF+EV + F +YYVIGFDPN GRFF+QYLL+L V+QMA+ALFR +
Sbjct: 623 WTYTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFV 682
Query: 659 AATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFL 718
RNL+VAN FG+F LL+ LGGF+L R+ + WWIW YW SP+MYAQNA+ VNEFL
Sbjct: 683 GGAARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFL 742
Query: 719 GHSWRKILPN--TTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL- 775
GHSW K+L N + E LGV+ L SRG F ++ WYW+G GALLGFI+LFNI F LAL++L
Sbjct: 743 GHSWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLK 802
Query: 776 -------NWSADDIRRRD-------------SSSQSL---------ETITEANQPKRRGM 806
+ S ++++ + +SS +L I + +QP +RGM
Sbjct: 803 PDGKSQPSISEEELKEKQANINGNVLDVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGM 862
Query: 807 VLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGK 866
VLPF P SLTF+D+ YSVDMPQEMK G+++DRL LL VSG FRPGVLTALMGV+GAGK
Sbjct: 863 VLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGK 922
Query: 867 TTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAW 926
TTLMDVLAGRKT GY+ GNI+ISGYPKKQETFAR+SGYCEQNDIHSPQVTV ESLL+SAW
Sbjct: 923 TTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAW 982
Query: 927 LRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 986
LRL +VDS TRKMFIEEVMELVEL LR ALVGLPGVNGLS EQRKRLTIAVELVANPS
Sbjct: 983 LRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPS 1042
Query: 987 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046
IIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+E
Sbjct: 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEE 1102
Query: 1047 IYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSE 1106
IYVGPLG HSS LIKYFEG GVSKI +GYNPATWMLEVT+ SQE AL +DF DIY+ SE
Sbjct: 1103 IYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSE 1162
Query: 1107 LYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLS 1166
L++RNKALI++LS P PGS +L+F TQY+QSF QC+ACLWKQ SYWRNPPY A+R
Sbjct: 1163 LFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFF 1222
Query: 1167 TTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYR 1226
TT+ +L FG +FWD+G KM + QDLFNAMGSMY AVLFIG+LN +VQPVV++ERTVFYR
Sbjct: 1223 TTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYR 1282
Query: 1227 ERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFL 1286
ERAAGMYS + YAF QV IE PY VQ+V Y +IVY+M+ F+WT AKFFWYLFFMFFT L
Sbjct: 1283 ERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLL 1342
Query: 1287 YFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTL 1346
YFTFYGMMAV LTP++H+++IVS FYA+WN+F+GF+I RP P+WW+WY W CP+AWTL
Sbjct: 1343 YFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTL 1402
Query: 1347 YGLIASQYGDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKF 1406
YGLI SQYGD ++ G V F+ +YF FKH +LG VA+V+VAF MLFAF+FG I
Sbjct: 1403 YGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMK 1462
Query: 1407 LNFQRR 1412
LNFQ+R
Sbjct: 1463 LNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2010 bits (5208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1440 (68%), Positives = 1169/1440 (81%), Gaps = 43/1440 (2%)
Query: 16 SASRWGSASEGAFSRS----SRRDEVDDEEALKWAALEKLPTYNRLRKGLLST------- 64
+AS W SA G FSRS S D DDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 65 PSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEH 124
+DV +LG QER+ L+++LV+V + DNE+FLLKLK R DRVGI +P IEVRFEH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 125 LKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLL 184
L+ EAE VG+ LPT N N +EG N+L IL ++K+ + IL VSGI++P RMTLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 185 LGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 244
LGPP SGKTTLLLALAG+L ++ G+VTYNGH M++FVPQRTAAYISQHD+HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYIL 304
RETL+FSARCQGVGSR++MLTEL+RREKAA IKPD D+D FMKA+A EGQE +++TDYIL
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 305 KILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIV 364
KILGLD+CADTMVGD+M+RGISGGQRKRVTTGEMLVGPA A FMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 365 NSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKC 424
SLRQ IHIL GT +ISLLQPAPE YDLFDDIIL+SDGQIVYQGPRE VLEFFE MGFKC
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 425 PERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFD 484
PERKGVADFLQEVTSRKDQ+QYW ++PYR+V VK+FA AFQSF G+ + +EL PFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 485 KTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFR 544
K+K+HPAALTT +YGV E LKA RE LLMKRNSFVY F+ QL ++ + MT+FFR
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 545 TKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFP 604
TKMHRDSVTDGVI+ GA FF ++MIMFNG++E+ +TI KLP+F+KQRDL F+P+W Y P
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 605 TWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRN 664
+WI KIP+SF+EV +VF +YYVIGFDP+AGRFF+QYLL+L +NQMA+ALFR + RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 665 LVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRK 724
++VAN FG+F LL+ LGGF+L RE +K WWIW YW SP+MYAQNAI VNEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 725 ILPNT--TEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL------- 775
+L N+ E LGV+ L+SRG F ++ WYW+G GALLGFI+LFN F LAL++L
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 776 -NWSADDIRRRDSS----------------------SQSLETITEANQPKRRGMVLPFEP 812
+ S ++++ + ++ +++ I + +QP +RGMVLPF P
Sbjct: 805 PSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAP 864
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872
SLTFD++ YSVDMPQEMK G+++DRL LL VSG+FRPGVLTALMGV+GAGKTTLMDV
Sbjct: 865 LSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 924
Query: 873 LAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE 932
LAGRKT GY+ GNITISGYPKKQETFAR+SGYCEQNDIHSPQVTV ESLL+SAWLRL +
Sbjct: 925 LAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKD 984
Query: 933 VDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992
VDS TRKMFIEEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 985 VDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1044
Query: 993 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPL
Sbjct: 1045 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1104
Query: 1053 GRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNK 1112
G SS LIKYFEG GVS+IK+GYNPATWMLEV++ SQE ALG+DF DIY+ SEL++RNK
Sbjct: 1105 GHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNK 1164
Query: 1113 ALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSL 1172
ALI++LS P PGS +L+F T+Y+ SF QC+ACLWK SYWRNPPY A+R TT+ +L
Sbjct: 1165 ALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIAL 1224
Query: 1173 TFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGM 1232
FG +FWD+G K K QDLFNAMGSMY+AVLFIG+LN+ +VQPVV++ERTVFYRERAAGM
Sbjct: 1225 LFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGM 1284
Query: 1233 YSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYG 1292
YS YAF QV IE PY VQ++ YG+IVY+M+ F+WTAAKFFWYLFFMFFTFLYFTFYG
Sbjct: 1285 YSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYG 1344
Query: 1293 MMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIAS 1352
MMAV LTP++H+++IVS FY +WN+FSGFIIPRP++PIWW+WY W CP+AWTLYGL+AS
Sbjct: 1345 MMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVAS 1404
Query: 1353 QYGDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
Q+GD ++ G VK F+ +YF FKH +LGVVA+V+VAF MLFAF+FG I LNFQ+R
Sbjct: 1405 QFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1978 bits (5124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 987/1429 (69%), Positives = 1161/1429 (81%), Gaps = 33/1429 (2%)
Query: 12 SLRRSASRWGSAS-EGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGN 70
SLRRS S W S S F RSSR E DDEEALKWAALEKLPTY+RLRKG+++ G
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSR--EEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQ 75
Query: 71 EIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAE 130
E+D+ LG QER+ L++KLV+ + DNE+FLLKL+NR +RVGI P IEVRFEHL + AE
Sbjct: 76 EVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAE 135
Query: 131 AYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPAS 190
A+VG+R +PT NF N +L++L+++ S K+ I+IL VSGII+P RMTLLLGPP +
Sbjct: 136 AFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGA 195
Query: 191 GKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAF 250
GKTTLLLALAGKLD++L++ G VTYNGH M EFVPQRT+AYISQHDVHIGEMTVRETLAF
Sbjct: 196 GKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAF 255
Query: 251 SARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310
S+RCQGVG+RYEMLTEL+RREK A IKPDPD+DV+MKA A EGQE SVVTDYILKILGLD
Sbjct: 256 SSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLD 314
Query: 311 VCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQF 370
+CADTMVGD MIRGISGGQ+KRVTTGEMLVGP++A FMDEISTGLDSSTTFQIVNSLRQ
Sbjct: 315 ICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQS 374
Query: 371 IHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGV 430
+HIL GT LI+LLQPAPE YDLFDDI+L+SDGQIVYQGPRE+VLEFFE MGFKCPERKGV
Sbjct: 375 VHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGV 434
Query: 431 ADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHP 490
ADFLQEVTSRKDQ+QYW + EPYRFV V EF++AF+SF VG L +EL PFD++++HP
Sbjct: 435 ADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHP 494
Query: 491 AALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRD 550
AALTT KYG+ K E LKAC RE LLMKRNSFVY FK+ QL +AL+ MT+FFRTK+ R+
Sbjct: 495 AALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRN 554
Query: 551 SVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKI 610
+ D I+ GA F ++ +FNG AE++M+IAKLP+FYKQRDL FYP WAYA PTWI KI
Sbjct: 555 GLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKI 614
Query: 611 PISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANT 670
PISFVE VW+ TYYVIGFDPN R FR YLLL+ ++Q+AS LFRL+AA GR++VVA+T
Sbjct: 615 PISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADT 674
Query: 671 FGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTT 730
FGAFA L+L LGGF++ RE IK +WIW YW SPLMYAQNAI VNEFLGHSW K++ T
Sbjct: 675 FGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATG 734
Query: 731 EPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN--------WSADDI 782
+ LG L++RG F D WYW+GVGAL+G+++LFN F L L +L+ S + +
Sbjct: 735 QTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEAL 794
Query: 783 RRRD------------------SSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSV 824
+ ++ S S+E + N +++GMVLPF P S+TFD+V YSV
Sbjct: 795 QEKEANRTGANVELATRGSAATSDGGSVEIRKDGN--RKKGMVLPFTPLSITFDNVKYSV 852
Query: 825 DMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTG 884
DMPQEMK RGV +D+L+LL VSGAFRPGVLTALMGV+G GKTTLMDVLAGRKT GY+ G
Sbjct: 853 DMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEG 912
Query: 885 NITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE 944
+I ISGYPK QETFARISGYCEQNDIHSP VTVYESLLYSAWLRL EVD K RKMF++E
Sbjct: 913 DIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDE 972
Query: 945 VMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1004
VM+LVELN LR +LVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 973 VMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1032
Query: 1005 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFE 1064
VMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLGR SSHLIKYFE
Sbjct: 1033 VMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFE 1092
Query: 1065 GNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPG 1124
GV KIK YNPATWMLEVT+ SQE LG++FA++Y++S+LY+RNK LIK+LS P PG
Sbjct: 1093 SIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPG 1152
Query: 1125 SKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTK 1184
SKDL F TQ++QSF QC+ACLWKQ SYWRNP YTA R T + +L FG +FWD+G K
Sbjct: 1153 SKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKK 1212
Query: 1185 MTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVL 1244
+ DL NAMGSMY AVLFIGI NA VQP+V +ERTVFYRE+AAGMYS + YA+AQVL
Sbjct: 1213 RSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVL 1272
Query: 1245 IEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHI 1304
IE+P+I VQ + YGL+VY+M+ F+WTAAKF WY+FFMFFTFLYFT+YGMMAV++TPN I
Sbjct: 1273 IEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDI 1332
Query: 1305 SAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRL-ES 1363
+AIV+ FYA+WN+F+GFIIPRPRIPIWW+WYYWACP+AWTLYGL+ SQ+G+ D + +
Sbjct: 1333 AAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDV 1392
Query: 1364 GETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
ETVK FLR + GF+HDFL VV ++VV F +LFA +F IK LNFQRR
Sbjct: 1393 DETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1412 | ||||||
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.993 | 0.985 | 0.745 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 1.0 | 0.988 | 0.743 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.995 | 0.985 | 0.733 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 1.0 | 0.990 | 0.729 | 0.0 | |
| 359482654 | 1397 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.997 | 0.756 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.998 | 0.986 | 0.738 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.993 | 0.854 | 0.743 | 0.0 | |
| 359482650 | 1862 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.748 | 0.743 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.998 | 0.958 | 0.728 | 0.0 | |
| 296081973 | 1436 | unnamed protein product [Vitis vinifera] | 0.998 | 0.981 | 0.712 | 0.0 |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2240 bits (5805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1069/1433 (74%), Positives = 1232/1433 (85%), Gaps = 30/1433 (2%)
Query: 1 MESGDIYRTTTSLRRSASRW-----GSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYN 55
MESG +YR +S+RR S +A FS SS + DDEEALKWAALEKLPTY+
Sbjct: 1 MESGYLYRAGSSVRRGNSSGTFSNNAAADHQVFSLSSHGQD-DDEEALKWAALEKLPTYD 59
Query: 56 RLRKGLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISM 115
RLRKG+L+T +G +E++V NLG QER+ L+++LV V + DNEKFLLKLKNR DRVGI +
Sbjct: 60 RLRKGILTTSTGAASEVEVQNLGFQERKNLVERLVNVAEEDNEKFLLKLKNRIDRVGIHV 119
Query: 116 PEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGI 175
P IEVRFEHL VEAEAYVGSRALPTFFN+ N++EG+LN L+ILSSRKKH+ ILK VSGI
Sbjct: 120 PTIEVRFEHLNVEAEAYVGSRALPTFFNYSVNMLEGVLNYLHILSSRKKHMWILKDVSGI 179
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQH 235
I+P RMTLLLGPP+SGKTTLLLALAGKLD +L+ GRVTYNGH MDEFVPQRTAAYISQH
Sbjct: 180 IKPSRMTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQH 239
Query: 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQE 295
D+HIGEMTVRETLAFSARCQGVGSRY+ML EL+RREK AGIKPDPD+DVFMKAAATEGQE
Sbjct: 240 DLHIGEMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQE 299
Query: 296 ASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGL 355
SVV DYILK+LGL+VCADT+VGDEM+RGISGGQ+KRVTTGEMLVGPA+A FMDEISTGL
Sbjct: 300 DSVVIDYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGL 359
Query: 356 DSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
DSSTT+QIVNS++Q++ IL GT LISLLQPAPE YDLFDDIIL+SDG+IVYQGPREHVL
Sbjct: 360 DSSTTYQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLR 419
Query: 416 FFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475
FFE+MGFKCP RKGVADFLQEVTSRKDQ QYWA ++ PYRFVTVKEFA+AF SF G+ L
Sbjct: 420 FFEYMGFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRL 479
Query: 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIA 535
G+EL +PFDK+K+HPAALTTKKYGV K+E KA SRE LLMKRNSFVY FK QLT +A
Sbjct: 480 GNELAVPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVA 539
Query: 536 LVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQF 595
++ MTLF RT+MHRDSVTDG IY GA FFI+++IMFNGMAEISMT+AKLP+FYKQRDL F
Sbjct: 540 VIAMTLFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLF 599
Query: 596 YPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALF 655
+P+W YA PTWI KIPI+F+EVA+ VF TY+VIGFDPN GR F+ YL+LL NQMAS LF
Sbjct: 600 FPAWIYALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLF 659
Query: 656 RLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715
R IAA GRN+VVANTFG+F LLLL+ LGGFVL+R+DIK WWIW +W SP+MYAQNA++VN
Sbjct: 660 RTIAAVGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWWIWGFWTSPMMYAQNAVVVN 719
Query: 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL 775
EFLG SW +LPN+TEPLG+EVL+SRGFFT++YWYWL V AL GF +L+N + LAL+FL
Sbjct: 720 EFLGKSWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFL 779
Query: 776 N----------------WSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDD 819
N + D+I R SS + K+RG+++PFEPHS+TFD
Sbjct: 780 NPLGKPQQAGISEEPQSNNVDEIGRSKSSRFTCN--------KQRGVIIPFEPHSITFDK 831
Query: 820 VTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT 879
V YSVDMPQEMK GV +D+LVLL VSGAFRPGVLTALMG++GAGKTT+MDVLAGRKT
Sbjct: 832 VMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTMMDVLAGRKTG 891
Query: 880 GYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRK 939
GY+ GNITISGYPKKQETFARISGYCEQNDIHSP +TVYESLLYSAWLRL EVD +TRK
Sbjct: 892 GYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVYESLLYSAWLRLPTEVDIETRK 951
Query: 940 MFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
MF+EEVMELVELN LRQALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 952 MFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
Query: 1000 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHL 1059
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGR S HL
Sbjct: 1012 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRLSCHL 1071
Query: 1060 IKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLS 1119
IKYFEG GV+KIK+GYNPATWMLEVTS ++E ALG+DFA+IY+SSEL+RRN+ALIKDLS
Sbjct: 1072 IKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDFAEIYRSSELFRRNRALIKDLS 1131
Query: 1120 KPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFW 1179
PAPGSKDL+F TQY++SFFTQC+ACLWKQ WSYWRNPPYTA+RFLSTT+ L FG MFW
Sbjct: 1132 TPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPPYTAIRFLSTTVIGLIFGTMFW 1191
Query: 1180 DMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYA 1239
D+G+K+TK+QDLFNAMGSMYTAVLF+G+ NA +VQPVVA+ERTVFYRERAAGMYS + YA
Sbjct: 1192 DIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVAVERTVFYRERAAGMYSALPYA 1251
Query: 1240 FAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLT 1299
FAQVLIE+PYIFVQA YG+IVY+M+ F WT +KFFWYL+FM+FT LYFTFYGMMAV+++
Sbjct: 1252 FAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFWYLYFMYFTLLYFTFYGMMAVAVS 1311
Query: 1300 PNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKED 1359
PNH I++++S FY +WNVFSGF+IPR R+P+WW+WY W CP+ WTLYGL+ASQ+GD +D
Sbjct: 1312 PNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWYSWICPVFWTLYGLVASQFGDMKD 1371
Query: 1360 RLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
RLE+GETV+ F+ Y FKHDFLGVVA V++ F +LFA F + IK NFQRR
Sbjct: 1372 RLETGETVEQFVTIYLDFKHDFLGVVAAVILGFTVLFAITFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2234 bits (5788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1429 (74%), Positives = 1222/1429 (85%), Gaps = 17/1429 (1%)
Query: 1 MESGDIYRTTTSLRRSASR-WGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
ME ++Y SLRR S W S + FS+SSR DE DDEEALKWAA+E+LPTY+RL+K
Sbjct: 1 MEGTELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLKK 60
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL+T G NEIDV NLG E++ L+D+LVKV + DNE FLLKLKNR DRVGI +P IE
Sbjct: 61 GLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMIE 120
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VRFEHL VE EA+VGSRALPTFFNF +I+EG LN L+IL S KK ++IL+ VSGII+P
Sbjct: 121 VRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKPK 180
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
RMTLLLGPP+SGKTTLLLALAGKLD L+ GRVTYNGH M+EFVPQRTAAYISQHD HI
Sbjct: 181 RMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHI 240
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVV 299
GEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPD+DVFMKA ATEGQEA+VV
Sbjct: 241 GEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVV 300
Query: 300 TDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
TDYILKILGL+VCAD MVG+EM+RG+SGGQRKRVTTGEMLVGPA+A FMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSST 360
Query: 360 TFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
T+QIVNS++Q+IHIL GT +ISLLQP PE Y+LFDDIIL+SDGQIVYQGPRE+VLEFFE+
Sbjct: 361 TYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEY 420
Query: 420 MGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479
MGFKCPERKGVADFLQEVTSRKDQ QYWA+K++PY FVTV+EFA+AFQSF VG+ L EL
Sbjct: 421 MGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAEL 480
Query: 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
PFDK+KSHPAALTTKKYGVGK E LKAC SRE+LLMKRNSFVY FKL QLT +A+V M
Sbjct: 481 STPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAM 540
Query: 540 TLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSW 599
TLF RT+MHRDSVT+G IY GA FF ++ IMFNG++EIS+TIAKLP+FYKQR L FYP W
Sbjct: 541 TLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPW 600
Query: 600 AYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIA 659
A++ P WI KIPI+ V+VA+WVF TYYVIGFDPN GRFF+QYLLL V+QMAS LFR IA
Sbjct: 601 AFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIA 660
Query: 660 ATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719
A GRN++VANTFG+FALL L+ALGGF+L+R++IK WWIW YW SPLMY QNAI+VNEFLG
Sbjct: 661 AAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLG 720
Query: 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN--W 777
+SW K+LP+TTE LG++VL+SRGFFT +YWYW+GVGAL+GF +L+N F LAL+FL
Sbjct: 721 NSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQ 780
Query: 778 SADDIRRRDSSSQS--------------LETITEANQPKRRGMVLPFEPHSLTFDDVTYS 823
+ DS+S + E I E N K++GMVLPFEPHS+TF+D+ YS
Sbjct: 781 KPQAVISEDSASNTSGKTGEVIQLSSVRTELIVEENHQKQKGMVLPFEPHSITFNDIRYS 840
Query: 824 VDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT 883
VDMPQEMK +G +DRL LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+
Sbjct: 841 VDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 900
Query: 884 GNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIE 943
G+I ISG+PKKQETFARISGYCEQNDIHSP VTVYESLLYS+WLRL PEV+S+TRKMFIE
Sbjct: 901 GDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMFIE 960
Query: 944 EVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
EVMELVEL LRQALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 961 EVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1020
Query: 1004 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYF 1063
IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLGRHS LIKYF
Sbjct: 1021 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIKYF 1080
Query: 1064 EGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAP 1123
E GV IK+GYNPATWMLEV+S +QE LG+DFA IYK+SELYRRNKALI++LS P
Sbjct: 1081 EAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELSTPPL 1140
Query: 1124 GSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGT 1183
GS DL+F TQY+QSFFTQCMACLWKQ WSYWRNPPYTAVRFL TT+ +L FG MFWD+G+
Sbjct: 1141 GSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFWDLGS 1200
Query: 1184 KMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQV 1243
K TK+QDLFNAMGSMY A++F+GI NA +VQPVVA+ERTVFYRERAAGMYS + YAFAQV
Sbjct: 1201 KTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYAFAQV 1260
Query: 1244 LIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHH 1303
+IE+PYIF+QA YGLIVYAM+ FEW+AAKFFWYLFFM+FT L++T+YGMMAV++TPN
Sbjct: 1261 VIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVTPNQQ 1320
Query: 1304 ISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLES 1363
+++IVS FY++WN+FSGFIIPRPRIP+WW+WY W CP+A+TLYGL++SQ+GD + LES
Sbjct: 1321 VASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDIKHTLES 1380
Query: 1364 GETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
GETV+ F+RSYF FKH+ LG VA V F LFAF F IKF NFQRR
Sbjct: 1381 GETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2233 bits (5786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1051/1433 (73%), Positives = 1223/1433 (85%), Gaps = 27/1433 (1%)
Query: 1 MESGDIYRTTTSLR-RSASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
ME DIYR + SLR RS++ W ++ AFSRSSR E DDEEALKWAALEKLPTYNRLRK
Sbjct: 1 MEGSDIYRASNSLRSRSSTVWRNSGVEAFSRSSR--EEDDEEALKWAALEKLPTYNRLRK 58
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL+ G NEIDV +LG+QERQ L+++LVKV + DNE+FLLKLK R DRVG+ +P IE
Sbjct: 59 GLLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIE 118
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VR+EHL +EAEA+VGSRALP+F N N++EG N L++ +S+KKH+TILK VSGII+P
Sbjct: 119 VRYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPR 178
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
RMTLLLGPP+SGKTTLLLAL+GKLD +L++ GRVTYNGH ++EFVPQRTAAYISQHD+HI
Sbjct: 179 RMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHI 238
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVV 299
GEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPDLDV+MKA ATEGQE+++V
Sbjct: 239 GEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIV 298
Query: 300 TDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
TDY LKILGLD+CADTMVGDEM+RGISGGQRKRVTTGEMLVGPA A FMDEISTGLDSST
Sbjct: 299 TDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSST 358
Query: 360 TFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
TFQIV+SLR ++HIL GT +ISLLQPAPE YDLFDDIILISDGQ+VY GPRE+VL+FFE
Sbjct: 359 TFQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFES 418
Query: 420 MGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479
MGF+CPERKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FA+AFQSF +G LG+EL
Sbjct: 419 MGFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEEL 478
Query: 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
+PFD+TKSHPAALTTKKYG+ KKE LKA SRE LLMKRNSFVY FKL QL +ALV M
Sbjct: 479 TVPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAM 538
Query: 540 TLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSW 599
TLF RT+MH +++ D +YAGA FF++I +MFNG+AEISMTIAKLP+FYKQR+L FYPSW
Sbjct: 539 TLFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSW 598
Query: 600 AYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIA 659
AYA P+WI KIP++ VEVAVWVF TYYVIGFDPN GRFF+QYL+LL V+QMAS LFR IA
Sbjct: 599 AYAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIA 658
Query: 660 ATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719
A GRN++VANTFGAFA++ + ALGGF+L++ DIKSWWIW YW SPLMY QNA+MVNEFL
Sbjct: 659 ALGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLS 718
Query: 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL---N 776
+SW N T LGVE L+SR FFTDSYWYWLG+GAL+GF+ LFN+ F LAL FL +
Sbjct: 719 NSWH----NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFD 774
Query: 777 WSADDIRRRDSSSQSL---------------ETITEANQPKRRGMVLPFEPHSLTFDDVT 821
I +SS++ +++ E++ K++GMVLPFEPHS+TFD+V
Sbjct: 775 KPQATITEDESSNEGTLADIELPGIESSGRGDSLVESSHGKKKGMVLPFEPHSITFDEVV 834
Query: 822 YSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY 881
YSVDMPQEMK +GV +DRLVLL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY
Sbjct: 835 YSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 894
Query: 882 VTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMF 941
+ G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLRL VDSKTRKMF
Sbjct: 895 IDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMF 954
Query: 942 IEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
IEEVMELVELN +R +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 955 IEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1014
Query: 1002 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIK 1061
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGGQEIYVGPLGRHSSHLIK
Sbjct: 1015 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIK 1074
Query: 1062 YFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKP 1121
YFE GVSKIK+GYNPATWMLEVT+ +QE +LG+DF D+YK+S+LYRRNK LI++L +P
Sbjct: 1075 YFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQP 1134
Query: 1122 APGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDM 1181
APGSKDLHF TQY+QSF QC ACLWKQRWSYWRNPPYTAVRF TT +L FG +FWD+
Sbjct: 1135 APGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDL 1194
Query: 1182 GTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFA 1241
G K + + DL NA+GSMYTAVLF+G+ NA +VQPVVAIERTVFYRE+AAGMYS + YAFA
Sbjct: 1195 GGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFA 1254
Query: 1242 QVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPN 1301
Q+L+E+PY+FVQAVTYG+IVYAM+ FEWTA KFFWYLFFM+FT LY+TFYGMM V LTPN
Sbjct: 1255 QILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPN 1314
Query: 1302 HHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRL 1361
HHI++IV+ FYA+WN+FSGF++ RP IP+WW+WYYWACP+AWT+YGL+ASQ+GD + +
Sbjct: 1315 HHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDLTEPM 1374
Query: 1362 --ESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
E + VK FL Y+G KHDF+GV A+VV +LFA +F + IK NFQ+R
Sbjct: 1375 TSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2212 bits (5732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1426 (72%), Positives = 1215/1426 (85%), Gaps = 14/1426 (0%)
Query: 1 MESGDIYRTTTSLR-RSASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
ME DIYR SLR S++ W ++ AFSRSSR +E +DEEALKWAALEKLPTYNRLRK
Sbjct: 1 MEGSDIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLRK 60
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL+T G NEID+ LG QERQ L+D+L+ V + DNE LLKLK R DRVGI +P IE
Sbjct: 61 GLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTIE 120
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VR+EHL VEAEAYVGSRALPTF NF N++E SL+ILS +KKH+TIL+ VSGII+P
Sbjct: 121 VRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKPR 180
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
RM LLLGPP+SGKTTLLLAL+GKLD +L++ GRV YNGH M+EFVPQRTAAYISQHDVHI
Sbjct: 181 RMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVHI 240
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVV 299
GEMTVRETLAFSARCQGVG+RY++L+ELARREK A IKPDPD+DV+MKAAAT GQEAS+V
Sbjct: 241 GEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLV 300
Query: 300 TDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
TDY+LKILGLD+CADTM+GDEM+RGISGGQRKRVTTGEMLVGPA A FMDEISTGLDSST
Sbjct: 301 TDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSST 360
Query: 360 TFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
TFQIV SLRQ++HIL GT +ISLLQPAPE Y+LFDDI+LISDGQIVYQGPRE+VLEFFE+
Sbjct: 361 TFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFEY 420
Query: 420 MGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479
+GF+CPERKGVADFLQEVTSRKDQEQYW +++E YRFVTV EFA+AFQSF VG+ +G+EL
Sbjct: 421 VGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEEL 480
Query: 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
PFDK+KSHPAALTTKKYGV KKE LKA SRE LLMKRNSFVY FKLFQLT +A++TM
Sbjct: 481 ATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILTM 540
Query: 540 TLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSW 599
T+F RT+MHR+S+ DG +Y GA FF ++++MFNG+AEISMTI KLPIFYKQRDL FYPSW
Sbjct: 541 TMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSW 600
Query: 600 AYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIA 659
AYA P+WI KIPI+F+E AVWVF TYYVIGFDPN GR +QYL+LL +NQM+S LFR IA
Sbjct: 601 AYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAIA 660
Query: 660 ATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719
A GRN++VA+TFG+FALL+L+ALGGFVL+R DIK+WWIW YW SPLMY QNAI+VNEFLG
Sbjct: 661 ALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFLG 720
Query: 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNW-- 777
SW PN+ + LG+++L+SRGFFT +YWYW+G+GAL+GF+ILFNI + LAL++LN
Sbjct: 721 DSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPYD 780
Query: 778 SADDIRRRDSSSQSLETITE----------ANQPKRRGMVLPFEPHSLTFDDVTYSVDMP 827
+ +S S I E ++ K+RGM+LPFEP+S+TFD + YSVDMP
Sbjct: 781 TPQTTITEESESGMTNGIAESAGRAIAVMSSSHKKKRGMILPFEPYSITFDQIVYSVDMP 840
Query: 828 QEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNIT 887
EMK +GV +DRLVLL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNI
Sbjct: 841 LEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIK 900
Query: 888 ISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
+SGYPK+QETFARISGYCEQNDIHSP VTVYESL+YSAWLRL EV++ TRKMFIEEVME
Sbjct: 901 VSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPAEVEAYTRKMFIEEVME 960
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
LVELN LR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 961 LVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1020
Query: 1008 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNP 1067
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGGQEIYVGPLGRHSS +IKYFE
Sbjct: 1021 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSQMIKYFESIE 1080
Query: 1068 GVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKD 1127
GV KIK+GYNPATWMLEVT+P+QE LG+DF +IY++S L RRNK LI +L PAPGSKD
Sbjct: 1081 GVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNSGLCRRNKRLISELGNPAPGSKD 1140
Query: 1128 LHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTK 1187
LHF TQY QS QC+ACLWKQ WSYWRNPPYTAVRFLSTT+T++ FG MFWD+G K +
Sbjct: 1141 LHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVTAVLFGTMFWDLGGKYSS 1200
Query: 1188 QQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEI 1247
+QDLFNAMGSMY AVLF+G+ N+ +VQPVVAIERTVFYRERAAGMYS + YA AQV+IE+
Sbjct: 1201 RQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFYRERAAGMYSALPYALAQVIIEL 1260
Query: 1248 PYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAI 1307
PY+FVQA +Y +IVYAMM FEWT KFFWY+FFM+FT YFTFYGMM V++TPNHH++++
Sbjct: 1261 PYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTLCYFTFYGMMTVAVTPNHHVASV 1320
Query: 1308 VSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLESGE-T 1366
V+ FY +WN+FSGF+I RP IP+WW+WYYWACP+AWT+YGL+ASQ+GD + ++S +
Sbjct: 1321 VASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWTIYGLVASQFGDITNVMKSENMS 1380
Query: 1367 VKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
V+ F+RS+ G KHDF+GV A++V F +LF +F + IK NFQRR
Sbjct: 1381 VQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSIKAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482654|ref|XP_003632802.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2201 bits (5704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1415 (75%), Positives = 1222/1415 (86%), Gaps = 21/1415 (1%)
Query: 1 MESGDIYRTTTSLRR-SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
M +G+IYR SLR+ S+S W ++ E FSRSSR DE DDEEALKWAALEKLPTYNR+RK
Sbjct: 1 MATGEIYRAGGSLRKDSSSIWRNSGEEVFSRSSR-DE-DDEEALKWAALEKLPTYNRMRK 58
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL +G +E+D+ NLG QE++ L+++LVK+ + DNEKFLLKL+NR DRVGI +PEIE
Sbjct: 59 GLLMGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIE 118
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VRFEHL ++AEA+VGSRALP+F N IE +LN+L IL SRKK +TIL VSGII+P
Sbjct: 119 VRFEHLTIDAEAHVGSRALPSFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPR 178
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
RMTLLLGPP+SGKTTLLLAL+GKLDSSL++ G+VTYNGH M+EFVPQRTA YISQHD HI
Sbjct: 179 RMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHI 238
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVV 299
GEMTVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DVFMKA ATEGQ+ +V+
Sbjct: 239 GEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVI 298
Query: 300 TDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
TDY LKILGL+VCADT+VGD+MIRGISGGQRKRVTTGEMLVGP++A FMDEISTGLDSST
Sbjct: 299 TDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSST 358
Query: 360 TFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
T+QIVNSLRQ IHIL GT LISLLQPAPE YDLFDDIIL+SD QIVYQGPRE VL+FFE
Sbjct: 359 TYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFES 418
Query: 420 MGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479
MGF+CPERKGVADFLQEVTSRKDQ+QYWA K+EPY FVTVKEFA+AFQSF +G+ LG EL
Sbjct: 419 MGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHEL 478
Query: 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
PFDKTKSHPAAL T+KYGV KKE L AC SRE LLMKRNSFVY FKL QL +A ++M
Sbjct: 479 ATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISM 538
Query: 540 TLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSW 599
T+F RT+MH++S DG IY GA FF ++MIMFNGM+E++MTIAKLP+FYKQR L FYP+W
Sbjct: 539 TIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAW 598
Query: 600 AYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIA 659
AYA P+WI KIPI+FVEVAVWVF +YYVIGFDPN GR F+QYLLL+ VNQMASALFR IA
Sbjct: 599 AYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIA 658
Query: 660 ATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719
A GRN++VANTFG+F+LLLL+ALGGFVL+RE++K WWIW YW SPLMYAQNAI+VNEFLG
Sbjct: 659 AAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLG 718
Query: 720 HSWRK-ILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWS 778
SW K ++TE LGV VL+SRGFFT++YWYW+G GALLGFI++FN + +AL++LN
Sbjct: 719 KSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLN-- 776
Query: 779 ADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDD 838
E I EA + ++GMVLPF+P S+TFDD+ YSVDMP+EMK +GVL+D
Sbjct: 777 --------------EAIAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLED 822
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETF 898
RL LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNI ISGYPKKQETF
Sbjct: 823 RLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETF 882
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
ARISGYCEQNDIHSP VT++ESLLYSAWLRL +VDSKTRKMFIEEVMELVEL L+ +L
Sbjct: 883 ARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSL 942
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT
Sbjct: 943 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1002
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNP 1078
VVCTIHQPSIDIFEAFDEL LLKRGGQEIYVGPLGRHSSHLIKYF+G GVSKIK+GYNP
Sbjct: 1003 VVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNP 1062
Query: 1079 ATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSF 1138
ATWMLEVTS +QE LG+DF +IYK+S+LYRRNK LIK+LS+PAPGSKDL+F TQY+QSF
Sbjct: 1063 ATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSF 1122
Query: 1139 FTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSM 1198
FTQCMACLWKQR SYWRNPPYTAVRF TT +L FG MFWD+GTK KQQDL NAMGSM
Sbjct: 1123 FTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSM 1182
Query: 1199 YTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYG 1258
Y AVLF+G+ N+ +VQPVVA+ERTVFYRERAAGMYS M YAFAQ L+EIPY+F QAV YG
Sbjct: 1183 YAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYG 1242
Query: 1259 LIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNV 1318
+IVYAM+ FEWTAAKFFWYLFFMFFT LYFTFYGMMAV+ TPN HI+AIV+ FY LWN+
Sbjct: 1243 VIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNL 1302
Query: 1319 FSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLE-SGETVKHFLRSYFGF 1377
FSGFI+PR RIP+WW+WYYWACP+AWTLYGL+ SQ+GD +DR E +G+TV+ +L YFGF
Sbjct: 1303 FSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGF 1362
Query: 1378 KHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
+HDFLGVVA V+V F +LF F+F IK NFQRR
Sbjct: 1363 EHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2187 bits (5667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1057/1431 (73%), Positives = 1213/1431 (84%), Gaps = 21/1431 (1%)
Query: 1 MESGDIYRTTTSLRRSASR-WGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
M + D YR + SLRR+ S W S+ FSRSSR DE DDEEALKWAALEKLPTYNRLR+
Sbjct: 1 MATADTYRASGSLRRNGSSIWRSSGADVFSRSSR-DE-DDEEALKWAALEKLPTYNRLRR 58
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL G +EID+ NLG QE++ L+++LVKV + DNEKFLLKLKNR DRVGI +PEIE
Sbjct: 59 GLLMGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIE 118
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VRFEHL ++AEA+VGSRALP+F NF N +EG+LN++ IL S+K+ TIL VSGII+P
Sbjct: 119 VRFEHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPR 178
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
R+TLLLGPP+SGKTTLLLALAGKLD +L++ GRVTYNGH M+EFVPQRTAAYISQHD HI
Sbjct: 179 RLTLLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHI 238
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVV 299
GEMTVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPDLDVFMKAAATEGQ+ +VV
Sbjct: 239 GEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVV 298
Query: 300 TDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSST 359
TDY LKILGLD+CADTMVGDEMIRGISGGQRKRVTTGEMLVGP++A FMDEISTGLDSST
Sbjct: 299 TDYTLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSST 358
Query: 360 TFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
TFQI+NSL+Q IHIL GT +ISLLQPAPE Y+LFDDIIL+SD QIVYQGPRE VLEFFE
Sbjct: 359 TFQIINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFES 418
Query: 420 MGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479
+GFKCPERKG ADFLQEVTSRKDQ QYWA K+ PY FVTVKEFA+AFQSF +G+ + DEL
Sbjct: 419 IGFKCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADEL 478
Query: 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
PFD+ KSHPAALTTKKYGV KKE L A SRE LLMKRNSFVY FKL QL +A++ M
Sbjct: 479 ASPFDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAM 538
Query: 540 TLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSW 599
TLF RT+M+++S DG IY GA FF ++MIMFNGMAE++MTIAKLP+FYKQRD FYP+W
Sbjct: 539 TLFLRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAW 598
Query: 600 AYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIA 659
AYA PTW+ KIPI+FVEVAVWVF TYYVIGFDPN R FRQYLLLL VNQMAS LFR IA
Sbjct: 599 AYALPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIA 658
Query: 660 ATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719
A GRN++VA+TFGAFA+L+L ALGGF+L+ +++K WWIW YW SPLMYAQNAI+VNEFLG
Sbjct: 659 AAGRNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLG 718
Query: 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN--- 776
SW K + N+TE LG+ VL+SRGFFTD++WYW+G GALLGFI +FN + L L++LN
Sbjct: 719 KSWSKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFE 778
Query: 777 -------WSADDIRRRDSSSQS-------LETITEANQPKRRGMVLPFEPHSLTFDDVTY 822
+D+ + + ++ +E I E N K++GMVLPF+PHS+TFDD+ Y
Sbjct: 779 KPQAVITEESDNAKTATTGDETHTWGEHMVEAIAEGNHNKKKGMVLPFQPHSITFDDIRY 838
Query: 823 SVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV 882
SVDMP+EMK +G L+DRL LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+
Sbjct: 839 SVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 898
Query: 883 TGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFI 942
GNI+ISGYPKKQETFARISGYCEQNDIHSP VTV+ESLLYSAWLRL +V+S+TRKMFI
Sbjct: 899 EGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFI 958
Query: 943 EEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
EEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 959 EEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1018
Query: 1003 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKY 1062
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLGRHSSHLI Y
Sbjct: 1019 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINY 1078
Query: 1063 FEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPA 1122
FEG GVSKIK+GYNPATWMLEVT+ +QE LG+DF +IYK+S+LYRRNK LIK+LS+PA
Sbjct: 1079 FEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIKELSQPA 1138
Query: 1123 PGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMG 1182
PG+KDL+F TQY+Q FFTQ +ACLWKQRWSYWRNPPYTAVRFL TT +L FG +FWD+G
Sbjct: 1139 PGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGLIFWDLG 1198
Query: 1183 TKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQ 1242
T+ T+QQDL NAMGSMY AVLF+G+ NA +VQPV+ +ERTVFYRERAAGMYS + YAF Q
Sbjct: 1199 TRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSALPYAFGQ 1258
Query: 1243 VLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNH 1302
L+EIPY+F QAV YG+IVY M+ FEWTA KFFWYLFFMF T LYFTFYGMMAV+ TPN
Sbjct: 1259 ALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAVAATPNQ 1318
Query: 1303 HISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGD-KEDRL 1361
HI++I++ FY LWN+FSGFI+PR RIP+WW+WY W CP+AWTLYGL+ASQ+GD + L
Sbjct: 1319 HIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGDIQSTLL 1378
Query: 1362 ESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
E+ +TVK FL YFGFKHDFLGVVA VVV F +LF F+F IK NFQ+R
Sbjct: 1379 ENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2187 bits (5667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1416 (74%), Positives = 1206/1416 (85%), Gaps = 13/1416 (0%)
Query: 8 RTTTSLRRSASR-WGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPS 66
+ + SLRR+ S W S+ FSRSSR DE DDEEALKWAALEKLPTYNRLR+GLL
Sbjct: 229 QASGSLRRNGSSIWRSSGADVFSRSSR-DE-DDEEALKWAALEKLPTYNRLRRGLLMGSE 286
Query: 67 GHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLK 126
G +EID+ NLG QE++ L+++LVKV + DNEKFLLKLKNR DRVGI +PEIEVRFEHL
Sbjct: 287 GEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLT 346
Query: 127 VEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLG 186
++AEA+VGSRALP+F NF N +EG+LN++ IL S+K+ TIL VSGII+P R+TLLLG
Sbjct: 347 IDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLG 406
Query: 187 PPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 246
PP+SGKTTLLLALAGKLD +L++ GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTVRE
Sbjct: 407 PPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRE 466
Query: 247 TLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI 306
TLAFSARCQGVG RY+ML EL+RREKAA IKPDPDLDVFMKAAATEGQ+ +VVTDY LKI
Sbjct: 467 TLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKI 526
Query: 307 LGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNS 366
LGLD+CADTMVGDEMIRGISGGQRKRVTTGEMLVGP++A FMDEISTGLDSSTTFQI+NS
Sbjct: 527 LGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINS 586
Query: 367 LRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPE 426
L+Q IHIL GT +ISLLQPAPE Y+LFDDIIL+SD QIVYQGPRE VLEFFE +GFKCPE
Sbjct: 587 LKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPE 646
Query: 427 RKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKT 486
RKG ADFLQEVTSRKDQ QYWA K+ PY FVTVKEFA+AFQSF +G+ + DEL PFD+
Sbjct: 647 RKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRA 706
Query: 487 KSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTK 546
KSHPAALTTKKYGV KKE L A SRE LLMKRNSFVY FKL QL +A++ MTLF RT+
Sbjct: 707 KSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTE 766
Query: 547 MHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTW 606
M+++S DG IY GA FF ++MIMFNGMAE++MTIAKLP+FYKQRD FYP+WAYA PTW
Sbjct: 767 MNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTW 826
Query: 607 IPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLV 666
+ KIPI+FVEVAVWVF TYYVIGFDPN R FRQYLLLL VNQMAS LFR IAA GRN++
Sbjct: 827 VLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMI 886
Query: 667 VANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKIL 726
VA+TFGAFA+L+L ALGGF+L+ +++K WWIW YW SPLMYAQNAI+VNEFLG SW K +
Sbjct: 887 VASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNV 946
Query: 727 PNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN---------W 777
N+TE LG+ VL+SRGFFTD++WYW+G GALLGFI +FN + L L++LN
Sbjct: 947 TNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVIT 1006
Query: 778 SADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLD 837
D + ++ +E I E N K++GMVLPF+PHS+TFDD+ YSVDMP+EMK +G L+
Sbjct: 1007 EESDNAKTATTEHMVEAIAEGNHNKKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALE 1066
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET 897
DRL LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNI+ISGYPKKQET
Sbjct: 1067 DRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQET 1126
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
FARISGYCEQNDIHSP VTV+ESLLYSAWLRL +V+S+TRKMFIEEVMELVEL LR A
Sbjct: 1127 FARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDA 1186
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR
Sbjct: 1187 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1246
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYN 1077
TVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLGRHSSHLI YFEG GVSKIK+GYN
Sbjct: 1247 TVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYN 1306
Query: 1078 PATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQS 1137
PATWMLEVT+ +QE LG+DF +IYK+S+LYRRNK LIK+LS+PAPG+KDL+F TQY+Q
Sbjct: 1307 PATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQP 1366
Query: 1138 FFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGS 1197
FFTQ +ACLWKQRWSYWRNPPYTAVRFL TT +L FG +FWD+GT+ T+QQDL NAMGS
Sbjct: 1367 FFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGLIFWDLGTRRTRQQDLLNAMGS 1426
Query: 1198 MYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTY 1257
MY AVLF+G+ NA +VQPV+ +ERTVFYRERAAGMYS + YAF Q L+EIPY+F QAV Y
Sbjct: 1427 MYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSALPYAFGQALVEIPYVFAQAVVY 1486
Query: 1258 GLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWN 1317
G+IVY M+ FEWTA KFFWYLFFMF T LYFTFYGMMAV+ TPN HI++I++ FY LWN
Sbjct: 1487 GVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAVAATPNQHIASIIAATFYTLWN 1546
Query: 1318 VFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGD-KEDRLESGETVKHFLRSYFG 1376
+FSGFI+PR RIP+WW+WY W CP+AWTLYGL+ASQ+GD + LE+ +TVK FL YFG
Sbjct: 1547 LFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGDIQSTLLENNQTVKQFLDDYFG 1606
Query: 1377 FKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
FKHDFLGVVA VVV F +LF F+F IK NFQ+R
Sbjct: 1607 FKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482650|ref|XP_002285112.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2183 bits (5657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1056/1420 (74%), Positives = 1209/1420 (85%), Gaps = 26/1420 (1%)
Query: 1 MESGDIY-----RTTTSLRR-SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTY 54
ME+ +IY R + S R+ S+S W ++ FSRSSR DE DDEEALKWAALEKLPTY
Sbjct: 461 METAEIYTASGRRASGSFRKNSSSIWRNSGAEVFSRSSR-DE-DDEEALKWAALEKLPTY 518
Query: 55 NRLRKGLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGIS 114
NRLRKGLL G +E+D+ NLG QER+ L+++LVK+ + DNEKFLLKLKNR DRVGI
Sbjct: 519 NRLRKGLLIGSEGEASEVDIHNLGPQERKNLVERLVKIAEEDNEKFLLKLKNRMDRVGID 578
Query: 115 MPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSG 174
+PEIEVRFEHL ++AEA+VGSRALP+F N N IE +LN+L IL SRKK TIL VSG
Sbjct: 579 LPEIEVRFEHLTIDAEAHVGSRALPSFINSVFNQIEDILNTLRILPSRKKKFTILHDVSG 638
Query: 175 IIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQ 234
II+PGRMTLLLGPP+SGKTTLLLAL+GKLDSSL++ GRVTYNGH M+EFVPQRTAAYISQ
Sbjct: 639 IIKPGRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGRVTYNGHGMNEFVPQRTAAYISQ 698
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
D HIGEMTVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DVFMKAAA EGQ
Sbjct: 699 LDTHIGEMTVRETLAFSARCQGVGDRYDMLVELSRREKAANIKPDPDIDVFMKAAAAEGQ 758
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
+ +V+TDY LKILGL++CADTMVGDEM+RGISGGQRKRVTTGEMLVGP++A FMDEISTG
Sbjct: 759 KENVITDYTLKILGLEICADTMVGDEMVRGISGGQRKRVTTGEMLVGPSKALFMDEISTG 818
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
LDSSTT+QIVNSLRQ +HIL GT LISLLQPAPE YDLFDDIIL+SD +I+YQGPRE VL
Sbjct: 819 LDSSTTYQIVNSLRQTVHILNGTALISLLQPAPETYDLFDDIILLSDSRIIYQGPREDVL 878
Query: 415 EFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQI 474
FFE MGF+CPERKGVADFLQEVTSRKDQEQYWA+K+EPY FVT KEFA+AFQSF G+
Sbjct: 879 NFFESMGFRCPERKGVADFLQEVTSRKDQEQYWAHKDEPYSFVTAKEFAEAFQSFHFGRK 938
Query: 475 LGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTI 534
LGDEL PFDKTKSHPAAL T+KYGV KKE L AC SRE LLMKRNSFVY FKL QLT +
Sbjct: 939 LGDELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLTIV 998
Query: 535 ALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQ 594
A++ MT+F RT+MH+++ DG IY GA FF ++M+MFNGM+E++MTI KLP+FYKQR L
Sbjct: 999 AMIAMTIFLRTEMHKNTTEDGNIYTGALFFTVMMVMFNGMSELAMTILKLPVFYKQRGLL 1058
Query: 595 FYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASAL 654
FYP+WAYA P+W KIPI+FVEV VWVF TYYVIGFDPN GR FRQYLLLL +NQ AS+L
Sbjct: 1059 FYPAWAYALPSWFLKIPITFVEVGVWVFITYYVIGFDPNVGRLFRQYLLLLLLNQTASSL 1118
Query: 655 FRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMV 714
FR IAA R+++VANTFG+FAL+L +ALGG VL+RE++K WWIW YW SP+MYAQNAI+V
Sbjct: 1119 FRFIAAACRSMIVANTFGSFALVLPFALGGIVLSRENVKKWWIWGYWSSPMMYAQNAILV 1178
Query: 715 NEFLGHSWRK-ILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALS 773
NEFLG SW K N+TE LGV VL++RGFFT+++WYW+G GALLGFI +FN + +AL+
Sbjct: 1179 NEFLGKSWSKNASTNSTESLGVAVLKARGFFTEAHWYWIGAGALLGFIFVFNFCYTVALT 1238
Query: 774 FLNWSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLR 833
+LN + I EA + ++GMVLPF+P S+TFDD+ YSVDMP+EMK +
Sbjct: 1239 YLN----------------QAIAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQ 1282
Query: 834 GVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893
GV +DRL LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ G+I+ISGYPK
Sbjct: 1283 GVPEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 1342
Query: 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL 953
KQETFARISGYCEQNDIHSP VTV+ESLLYSAWLRL P VD++TRKMFIEEVMELVEL
Sbjct: 1343 KQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPPNVDAETRKMFIEEVMELVELTP 1402
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 1403 LRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1462
Query: 1014 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIK 1073
DTGRTVVCTIHQPSIDIF+AFDEL LLKRGGQEIY+GPLGRHSSHLIKYFEG GVSKIK
Sbjct: 1463 DTGRTVVCTIHQPSIDIFDAFDELLLLKRGGQEIYMGPLGRHSSHLIKYFEGIEGVSKIK 1522
Query: 1074 NGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQ 1133
+GYNPATWMLEVT+ +QE LG+DF +IY+ S+LYRRNK LIK+LS+P PGSKDL+F TQ
Sbjct: 1523 DGYNPATWMLEVTASAQELILGVDFTEIYEKSDLYRRNKDLIKELSQPTPGSKDLYFPTQ 1582
Query: 1134 YAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFN 1193
Y+QSFFTQCMACLWKQR SYWRNPPYTAVRF TT +L FG MFWD+GTK T+QQD+ N
Sbjct: 1583 YSQSFFTQCMACLWKQRLSYWRNPPYTAVRFFFTTFVALMFGTMFWDLGTKRTRQQDISN 1642
Query: 1194 AMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQ 1253
AMGSMY AVLF+G N +VQPVVA+ERTVFYRERAAGMYS M YAFAQ L+EIPY+F Q
Sbjct: 1643 AMGSMYAAVLFLGFQNGQSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFSQ 1702
Query: 1254 AVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFY 1313
AV YG+IVYAM+ FEWTAAKFFWYLFFMFF+ LYFTFYGMMAV+ TPN HI+AIV+ FY
Sbjct: 1703 AVVYGVIVYAMIGFEWTAAKFFWYLFFMFFSLLYFTFYGMMAVAATPNQHIAAIVASSFY 1762
Query: 1314 ALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDR-LESGETVKHFLR 1372
LWN+FSGFI+PR RIP+WW+WYYWACP+AW+LYGL+ SQ+GD ED L+S TVK +L
Sbjct: 1763 TLWNLFSGFIVPRNRIPVWWRWYYWACPVAWSLYGLVTSQFGDIEDTLLDSNVTVKQYLD 1822
Query: 1373 SYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
YFGFKHDFLGVVA+V+V F +LF F+F IK NFQRR
Sbjct: 1823 DYFGFKHDFLGVVAVVIVGFTVLFLFIFAFAIKAFNFQRR 1862
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1073/1473 (72%), Positives = 1229/1473 (83%), Gaps = 63/1473 (4%)
Query: 1 MESGDIYRTTTSLRR-SASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
M +G+IYR SLR+ S+S W ++ E FSRSSR DE DDEEALKWAALEKLPTYNR+RK
Sbjct: 1 MATGEIYRAGGSLRKDSSSIWRNSGEEVFSRSSR-DE-DDEEALKWAALEKLPTYNRMRK 58
Query: 60 GLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIE 119
GLL +G +E+D+ NLG QE++ L+++LVK+ + DNEKFLLKL+NR DRVGI +PEIE
Sbjct: 59 GLLMGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIE 118
Query: 120 VRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPG 179
VRFEHL ++AEA+VGSRALP+F N N IE +LN+L IL SRKK TIL VSGII+P
Sbjct: 119 VRFEHLTIDAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPR 178
Query: 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239
RMTLLLGPP+SGKTTLLLAL+GKLDSSL++ G+VTYNGH M+EFVPQRTA YISQHD HI
Sbjct: 179 RMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHI 238
Query: 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK------------ 287
GEMTVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DVFMK
Sbjct: 239 GEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKV 298
Query: 288 -----AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGP 342
A ATEGQ+ +V+TDY LKILGL+VCADT+VGD+MIRGISGGQRKRVTTGEMLVGP
Sbjct: 299 LIGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGP 358
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
++A FMDEISTGLDSSTT+QIVNSLRQ IHIL GT LISLLQPAPE YDLFDDIIL+SD
Sbjct: 359 SKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDS 418
Query: 403 QIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEF 462
QIVYQGPRE VL+FFE MGF+CPERKGVADFLQEVTSRKDQ+QYWA K+EPY FVTVKEF
Sbjct: 419 QIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEF 478
Query: 463 ADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSF 522
A+AFQSF +G+ LG EL PFDKTKSHPAAL T+KYGV KKE L AC SRE LLMKRNSF
Sbjct: 479 AEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSF 538
Query: 523 VYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIA 582
VY FKL QL +A ++MT+F RT+MH++S DG IY GA FF ++MIMFNGM+E++MTIA
Sbjct: 539 VYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIA 598
Query: 583 KLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYL 642
KLP+FYKQR L FYP+WAYA P+WI KIPI+FVEVAVWVF +YYVIGFDPN GR F+QYL
Sbjct: 599 KLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYL 658
Query: 643 LLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWC 702
LL+ VNQMASALFR IAA GRN++VANTFG+F+LLLL+ALGGFVL+RE++K WWIW YW
Sbjct: 659 LLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWS 718
Query: 703 SPLMYAQNAIMVNEFLGHSWRK-ILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFI 761
SPLMYAQNAI+VNEFLG SW K ++TE LGV VL+SRGFFT++YWYW+G GALLGFI
Sbjct: 719 SPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFI 778
Query: 762 ILFNIGFALALSFLNW----------SADDIR----------RRDSSSQS---------- 791
++FN + +AL++LN +++ + RR S Q+
Sbjct: 779 LVFNFCYTVALTYLNAFEKPQAVITEESENSKTGGKIELSSHRRGSIDQTASTERREEIG 838
Query: 792 -----------LETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRL 840
E I EA + ++GMVLPF+P S+TF+D+ YSVDMP+EMK +GVL+DRL
Sbjct: 839 RSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRL 898
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR 900
LL VSGAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNI ISGYPKKQETFAR
Sbjct: 899 ELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFAR 958
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
I GYCEQNDIHSP VT++ESLLYSAWLRL +VDSKTRKMFIEEVMELVEL L+ +LVG
Sbjct: 959 IXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVG 1018
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1019 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1078
Query: 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPAT 1080
CTIHQPSIDIFEAFDEL LLKRGGQEIYVGPLGRHSSHLIKYFEG GVSKIK GYNPAT
Sbjct: 1079 CTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPAT 1138
Query: 1081 WMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFT 1140
WMLEVT+ +QE LG+DF +IYK+S+LYRRNK LIK+LS+PAPGSKDL+F TQY+QSFFT
Sbjct: 1139 WMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFT 1198
Query: 1141 QCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYT 1200
QCMACLWKQR SYWRNPPYTAVRF TT +L FG MFWD+GTK KQQDL NAMGSMY
Sbjct: 1199 QCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYA 1258
Query: 1201 AVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLI 1260
AVLF+G+ N+ +VQPVVA+ERTVFYRERAAGMYS M YAFAQ L+EIPY+F QAV YG+I
Sbjct: 1259 AVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVI 1318
Query: 1261 VYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFS 1320
VYAM+ FEWTAAKFFWYLFFMFFT LYFTFYGMMAV+ TPN HI+AIV+ FY LWN+FS
Sbjct: 1319 VYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFS 1378
Query: 1321 GFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLE-SGETVKHFLRSYFGFKH 1379
GFI+PR RIP+WW+WYYWACP+AWTLYGL+ SQ+GD +DR E +G+TV+ +L YFGF+H
Sbjct: 1379 GFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEH 1438
Query: 1380 DFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
DFLGVVA V+V F +LF F+F IK NFQRR
Sbjct: 1439 DFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081973|emb|CBI20978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1438 (71%), Positives = 1211/1438 (84%), Gaps = 28/1438 (1%)
Query: 1 MESGDIYRTTTSLRRSASRWGSASEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKG 60
MES D+YR ++ S++ W ++ FSRSSR DE DDEEALKWAA+EKLPTY R+R+G
Sbjct: 1 MESSDVYRVNSARLSSSNIWRNSGMEVFSRSSR-DE-DDEEALKWAAIEKLPTYLRIRRG 58
Query: 61 LLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEV 120
+L+ G EID+ +LGL E++ L+++LVK+ + DNEKFLLKLK R DRVG+ +P IEV
Sbjct: 59 ILAEEEGKAREIDITSLGLIEKKNLLERLVKIAEEDNEKFLLKLKERIDRVGLDIPTIEV 118
Query: 121 RFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGR 180
RFEH+ V+AEAY+G RALPT NF AN++EG LN L+IL SRKK + IL VSGII+PGR
Sbjct: 119 RFEHITVDAEAYIGGRALPTIINFSANMLEGFLNYLHILPSRKKPLPILHDVSGIIKPGR 178
Query: 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIG 240
MTLLLGPP+SGKTTLLL LAGKL S L+L GRV+YNGH MDEFVPQR++AYISQ+D+HIG
Sbjct: 179 MTLLLGPPSSGKTTLLLTLAGKLGSDLKLSGRVSYNGHGMDEFVPQRSSAYISQYDLHIG 238
Query: 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVT 300
EMTVRETLAFSARCQGVG+ Y+ML EL+RREK A IKPDPD+D++MKAAA +GQ S++T
Sbjct: 239 EMTVRETLAFSARCQGVGTGYDMLAELSRREKVANIKPDPDIDIYMKAAALKGQGGSLIT 298
Query: 301 DYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTT 360
DYILKILGL+VCADT+VGDEM+RGISGGQ++R+TTGEMLVGPA+A FMDEISTGLDSSTT
Sbjct: 299 DYILKILGLEVCADTIVGDEMVRGISGGQKRRLTTGEMLVGPAKALFMDEISTGLDSSTT 358
Query: 361 FQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFM 420
FQIVNS+RQ IHIL+GT +ISLLQPAPE YDLFDDIIL+SDGQIVYQGPRE+VLEFFE M
Sbjct: 359 FQIVNSIRQSIHILKGTAIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHM 418
Query: 421 GFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELG 480
GFKCPERKGVADFLQEVTS+KDQEQYWA++ EPY FVTV EF++AFQSF VG+ LGDEL
Sbjct: 419 GFKCPERKGVADFLQEVTSKKDQEQYWAHRGEPYSFVTVTEFSEAFQSFHVGRRLGDELA 478
Query: 481 IPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMT 540
IPFDK K+H AALTTKKYGV KKE LKAC SRELLLMKRNSFVY FK+ QL +A + MT
Sbjct: 479 IPFDKAKAHTAALTTKKYGVSKKELLKACISRELLLMKRNSFVYIFKMSQLILLAFIMMT 538
Query: 541 LFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWA 600
LF RT M R ++ DG I+ G+ FF ++MIMFNG +E+++TI KLP+FYKQRDL FYPSWA
Sbjct: 539 LFLRTDMPRKTIADGWIFLGSMFFTLMMIMFNGFSELALTIMKLPVFYKQRDLLFYPSWA 598
Query: 601 YAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAA 660
Y+ PTWI KIPI+ VEVA+WVF TYYV+GFDPN RFFRQYLLLL VNQMAS L RL+AA
Sbjct: 599 YSLPTWILKIPITLVEVAIWVFMTYYVVGFDPNIERFFRQYLLLLCVNQMASGLLRLMAA 658
Query: 661 TGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGH 720
GRN++VANTFG+FALL + +GGFVL+++D+K WW+W YW SP+MY QNAI VNEFLG
Sbjct: 659 LGRNIIVANTFGSFALLAVLVMGGFVLSKDDVKPWWMWGYWISPMMYGQNAIAVNEFLGK 718
Query: 721 SWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN---- 776
SWR + N TEPLGV VL+SRG F ++YWYWLGVGAL+G++ LFN F +AL++LN
Sbjct: 719 SWRHVPENATEPLGVLVLKSRGIFPEAYWYWLGVGALIGYVFLFNFLFTVALAYLNPYGK 778
Query: 777 --------------------WSADDIRRRDSSSQS--LETITEANQPKRRGMVLPFEPHS 814
D IR S S S + + A+Q ++RGM+LPFEP S
Sbjct: 779 HQTVLSEETLTEQSSRGTSCTGGDKIRSGSSRSLSARVGSFNNADQNRKRGMILPFEPLS 838
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+TFD++ Y+VDMPQEMK +G+ ++RL LL VSG+FRPGVLTALMGV+GAGKTTLMDVLA
Sbjct: 839 ITFDEIRYAVDMPQEMKSQGIPENRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLA 898
Query: 875 GRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVD 934
GRKT GY+ G+I ISGYPK Q+TFARISGYCEQ DIHSP VTVYESLLYSAWLRL PEVD
Sbjct: 899 GRKTGGYIDGSIKISGYPKNQKTFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVD 958
Query: 935 SKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 994
S TRKMFIEEVMELVELN LRQALVGLPGV+GLSTEQRKRLT+AVELVANPSIIFMDEPT
Sbjct: 959 SATRKMFIEEVMELVELNSLRQALVGLPGVDGLSTEQRKRLTVAVELVANPSIIFMDEPT 1018
Query: 995 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGR 1054
SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDELFLLKRGG+EIY GPLG
Sbjct: 1019 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYAGPLGH 1078
Query: 1055 HSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKAL 1114
HS+HLIKYFEG GVSKIK+GYNPATWMLEVTS +QE ALGI+F D+YK+SELYRRNKAL
Sbjct: 1079 HSAHLIKYFEGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNSELYRRNKAL 1138
Query: 1115 IKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTF 1174
IK+LS P PGSKDL+F TQY+QSFF QC CLWKQ WSYWRNP YTAVR L TT +L F
Sbjct: 1139 IKELSTPPPGSKDLYFPTQYSQSFFAQCKTCLWKQHWSYWRNPSYTAVRLLFTTFIALMF 1198
Query: 1175 GAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYS 1234
G +FWD+G++ ++QDLFNAMGSMY AVLFIG NA +VQPVVAIERTVFYRE+AAGMYS
Sbjct: 1199 GTIFWDLGSRRQRKQDLFNAMGSMYCAVLFIGAQNATSVQPVVAIERTVFYREKAAGMYS 1258
Query: 1235 GMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMM 1294
+ YAF QV+IE+PYI +Q + YG+IVYAM+ F+WT KFFWY+FFM+FTFLYFTFYGMM
Sbjct: 1259 ALPYAFGQVMIELPYILIQTIIYGVIVYAMIGFDWTMTKFFWYIFFMYFTFLYFTFYGMM 1318
Query: 1295 AVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQY 1354
AV+++PNH+I+AI+S FYA+WN+FSGFI+PR RIP+WW+WYYW CP++WTLYGLI SQ+
Sbjct: 1319 AVAVSPNHNIAAIISSAFYAIWNLFSGFIVPRTRIPVWWRWYYWCCPISWTLYGLIGSQF 1378
Query: 1355 GDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412
GD +D+L++GET++ F+RSYFGF++DFLG+VA+V+V +LF F F I+ NFQ+R
Sbjct: 1379 GDMKDKLDTGETIEDFVRSYFGFRNDFLGIVAVVIVGITVLFGFTFAYSIRAFNFQKR 1436
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1412 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.998 | 0.990 | 0.644 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.942 | 0.915 | 0.566 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.982 | 0.961 | 0.546 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.982 | 0.979 | 0.540 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.970 | 0.960 | 0.511 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.969 | 0.968 | 0.492 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.947 | 0.922 | 0.496 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.531 | 0.516 | 0.557 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.536 | 0.533 | 0.533 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.532 | 0.511 | 0.540 | 0.0 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4825 (1703.5 bits), Expect = 0., P = 0.
Identities = 918/1425 (64%), Positives = 1080/1425 (75%)
Query: 1 MESGDIYXXXXXXXXXXXXWGSAS-EGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRK 59
ME + W S FSRSSR E DDEEAL+WAALEKLPT++RLRK
Sbjct: 1 MEGTSFHQASNSMRRNSSVWKKDSGREIFSRSSR--EEDDEEALRWAALEKLPTFDRLRK 58
Query: 60 GLLSTPSGHG--NEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPE 117
G+L+ G NEID+ LG Q+ + L+++L+KV D ++EK L KLK R DRVGI +P
Sbjct: 59 GILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPT 118
Query: 118 IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIR 177
IEVRF+HLKVEAE +VG RALPTF NF +N + LN+L+++ +RKK TIL VSGI++
Sbjct: 119 IEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVK 178
Query: 178 PGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDV 237
PGRM LLLGPP+S D L+ GRVTYNGH M+EFVPQRTAAYI Q+DV
Sbjct: 179 PGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDV 238
Query: 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEAS 297
HIGEMTVRET A++AR QGVGSRY+MLTELARREK A IKPDPD+D+FMKA +T G++ +
Sbjct: 239 HIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTN 298
Query: 298 VVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDS 357
V+TDYILKILGL+VCADTMVGD+M+RGISGGQ+KRVTTGEMLVGP++A FMDEISTGLDS
Sbjct: 299 VMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDS 358
Query: 358 STTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFF 417
STT+QIVNSLR ++HI GT LISLLQPAPE ++LFDDIILI++G+I+Y+GPR+HV+EFF
Sbjct: 359 STTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFF 418
Query: 418 EFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGD 477
E MGFKCP RKGVADFLQEVTS+KDQ QYWA ++EPYRF+ V+EFA+AFQSF VG+ +GD
Sbjct: 419 ETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGD 478
Query: 478 ELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALV 537
EL +PFDKTKSHPAALTTKKYGVG KE +K SRE LLMKRNSFVY+FK QL +A +
Sbjct: 479 ELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFL 538
Query: 538 TMTLFFRTKMHRDSVTDGVIYAGATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYP 597
TMTLFFRT+M + + DG +Y GA NGM+E+SMTIAKLP+FYKQRDL FYP
Sbjct: 539 TMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYP 598
Query: 598 SWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRL 657
+W Y+ P W+ KIPISF+E A+ F TYYVIGFDPN GR F+QY+LL+ +NQMASALF++
Sbjct: 599 AWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKM 658
Query: 658 IAATGRNLVVANTXXXXXXXXXXXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEF 717
+AA GRN++VANT +R+DIK WWIW YW SP+MY QNAI+ NEF
Sbjct: 659 VAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEF 718
Query: 718 LGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNW 777
GHSW + + N++E LGV L+SRGF +YWYW+G GALLGF++LFN GF LAL+FLN
Sbjct: 719 FGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNS 778
Query: 778 XXXXXXXXXXXXXXLET---------ITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQ 828
ET + EA K+RGMVLPFEPHS+TFD+V YSVDMPQ
Sbjct: 779 LGKPQAVIAEEPASDETELQSARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQ 838
Query: 829 EMKXXXXXXXXXXXXNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITI 888
EM V+GAFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ GNITI
Sbjct: 839 EMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITI 898
Query: 889 SGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXX 948
SGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSAWLRL EVD RK+FI
Sbjct: 899 SGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMEL 958
Query: 949 XXXXXXRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
RQALVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT
Sbjct: 959 VELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1018
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPG 1068
VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG+EIYVGPLG S+HLI YFE G
Sbjct: 1019 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQG 1078
Query: 1069 VSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDL 1128
++KI GYNPATWMLEV++ SQE ALG+DFA +YK+SELY+RNK LIK+LS+PAPGSKDL
Sbjct: 1079 INKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDL 1138
Query: 1129 HFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQ 1188
+F TQY+QSF TQCMA LWKQ WSYWRNPPYTAVRFL T +L FG MFWD+G K +
Sbjct: 1139 YFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTR 1198
Query: 1189 QDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIP 1248
QDL NAMGSMYTAVLF+G+ NA +VQPVV +ERTVFYRE+AAGMYS M YAFAQV IEIP
Sbjct: 1199 QDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIP 1258
Query: 1249 YIFVQAVTYGLIVYAMMQFEWTAAKXXXXXXXXXXXXXXXXXXGMMAVSLTPNHHISAIV 1308
Y+ VQA+ YGLIVYAM+ FEWTA K GMMAV++TPNHHI+++V
Sbjct: 1259 YVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVV 1318
Query: 1309 SFGFYALWNVFSGFXXXXXXXXXWWKWYYWACPLAWTLYGLIASQYGD-KEDRLESGETV 1367
S FY +WN+FSGF WW+WYYW CP+AWTLYGLIASQ+GD E +S +V
Sbjct: 1319 SSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSV 1378
Query: 1368 KHFLRSYFGFKHDXXXXXXXXXXXXXXXXXXXXGLGIKFLNFQRR 1412
K F+R ++G++ +GIK NFQ+R
Sbjct: 1379 KQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
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| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4028 (1423.0 bits), Expect = 0., P = 0.
Identities = 769/1357 (56%), Positives = 964/1357 (71%)
Query: 24 SEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGN----EIDVDNLGL 79
++ F RS RR+E DD E L+WAA+E+LPT++RLRKG+L S +G +ID+ L
Sbjct: 44 TDEVFGRSERREE-DDME-LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEP 101
Query: 80 QERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALP 139
++++ L++ ++ + DNEKFL L+ R DRVGI +P+IEVR+E++ VE + SRALP
Sbjct: 102 KDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALP 161
Query: 140 TFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXX 199
T FN N +E +L ++L S++K I ILK +SGI++P RMTLLLGPP+S
Sbjct: 162 TLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQAL 221
Query: 200 XXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 259
D +L++ GR+TY GH EFVPQ+T AYISQHD+H GEMTVRE L FS RC GVGS
Sbjct: 222 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGS 281
Query: 260 RYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319
RY++++EL+RREK GIKPDP +D FMK+ A GQE S+VTDY+LKILGLD+CAD + GD
Sbjct: 282 RYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGD 341
Query: 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTL 379
M RGISGGQ+KR+TTGEMLVGPA+A FMDEISTGLDSSTTFQI +RQ +HI T +
Sbjct: 342 VMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMI 401
Query: 380 ISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTS 439
ISLLQPAPE ++LFDDIIL+S+GQIVYQGPR++VLEFFE+ GF+CPERKGVADFLQEVTS
Sbjct: 402 ISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTS 461
Query: 440 RKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYG 499
+KDQEQYW +E+PY +V+V +F+ F +F GQ L E +P+DK K+H AAL T+KYG
Sbjct: 462 KKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYG 521
Query: 500 VGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYA 559
+ E KAC RE LLMKRNSFVY FK Q+T ++L+TMT++ RT+MH +V DG +
Sbjct: 522 ISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFY 581
Query: 560 GATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAV 619
GA NG+AE++ T+ +LP+FYKQRD FYP WA+A P W+ KIP+S +E +
Sbjct: 582 GAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGI 641
Query: 620 WVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXXXXXXX 679
W+ TYY IGF P+A RFFRQ L VNQMA +LFR + A GR V++N+
Sbjct: 642 WIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIV 701
Query: 680 XXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPN-----TTEPLG 734
++DI+ W WAY+ SP+MY Q AI++NEFL W PN + +G
Sbjct: 702 FTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSS--PNYDTRINAKTVG 759
Query: 735 VEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWXXXXXXXXX-------- 786
+L+SRGFFT+ YW+W+ + ALLGF +LFN+ + LAL +LN
Sbjct: 760 EVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQK 819
Query: 787 -----XXXXXLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXX 841
+E + +N+ +RGMVLPF+P SL F++V Y VDMP EMK
Sbjct: 820 GENRGTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQ 879
Query: 842 XXNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
V GAFRPG+LTAL+GV+GAGKTTLMDVLAGRKT GY+ G+I+ISGYPK Q TFAR+
Sbjct: 880 LLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARV 939
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGL 961
SGYCEQNDIHSP VTVYESL+YSAWLRLS ++D KTR++F+ R ++VGL
Sbjct: 940 SGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGL 999
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1021
PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC
Sbjct: 1000 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1059
Query: 1022 TIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATW 1081
TIHQPSIDIFE+FDEL L+KRGGQ IY G LG HS L++YFE GV KI +GYNPATW
Sbjct: 1060 TIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATW 1119
Query: 1082 MLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQ 1141
ML+VT+PS E+ + +DFA I+ +S LYRRN+ LIKDLS P PGSKD++F T+YAQSF TQ
Sbjct: 1120 MLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQ 1179
Query: 1142 CMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTA 1201
AC WKQ WSYWR+P Y A+RFL T + + FG +FW +GTK +QDL N G+MY A
Sbjct: 1180 TKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAA 1239
Query: 1202 VLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIV 1261
VLF+G LNA VQP +AIERTVFYRE+AAGMYS + YA +QV +EI Y +Q Y LI+
Sbjct: 1240 VLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLIL 1299
Query: 1262 YAMMQFEWTAAKXXXXXXXXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYALWNVFSG 1321
Y+M+ WT AK GMM ++LTPN+ I+ I F +LWN+FSG
Sbjct: 1300 YSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSG 1359
Query: 1322 FXXXXXXXXXWWKWYYWACPLAWTLYGLIASQYGDKE 1358
F WW+WYYWA P+AWTLYGLI SQ GDK+
Sbjct: 1360 FLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKD 1396
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3958 (1398.3 bits), Expect = 0., P = 0.
Identities = 772/1413 (54%), Positives = 969/1413 (68%)
Query: 25 EGAFSRSSRRDEV--DDEEALKWAALEKLPTYNRLRKGL---LSTPSGHGNEI-----DV 74
E F+ SSRR + +DEEALKWA++EKLPTYNRLR L L +GN+I DV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 75 DNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVG 134
L +ERQ ID + KV + DNE+ L KL+NR DRVGI +P +EVR++HL V+A+ Y G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 135 SRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXX 194
R+LP+ N N+ E L + I ++K +TILK VSGI++P RMTLLLGPP+S
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 195 XXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 254
D SL + G VTYNG+ ++EFVP +T+AYISQ+D+H+G MTV+ETL FSARC
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 255 QGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCAD 314
QGVG+RY++L ELARREK AGI P+ D+D+FMKA+A +G ++S++TDY LKILGLD+C D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL 374
T+VGD+M+RGISGGQ+KRVTTGEM+VGP + FMDEISTGLDSSTTFQIV L+Q +H+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 375 RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
T LISLLQPAPE +DLFDDIIL+S+GQIVYQGPR+H+LEFFE GFKCPERKG ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 435 QEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALT 494
QEVTS+KDQEQYW + PYR++ V EFA +F+ F VG L +EL +P+DK+KSH AAL
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 495 TKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTD 554
KY + K E LK+C +E +LMKRNSF Y FK Q+ IA +T TL+ RT+MH + D
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 555 GVIYAGATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISF 614
IY G+ NG+AE++MTI +LP+FYKQRDL F+P W Y PT++ IPIS
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 615 VEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXX 674
E W+ TYY IG+ P+A RFF+Q+L++ + QMA+ +FR IA+T R + +ANT
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 675 XXXXXXXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSW-RKILPNTTEPL 733
R +I WW WAYW SPL YA NAI VNE W K+ N+T L
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRL 750
Query: 734 GVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWXXXXXX---------X 784
G VL F D WYW+GVG LLGF ++FN F LAL++L+
Sbjct: 751 GTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDEEA 810
Query: 785 XXXXXXXLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXN 844
ET E+ K+ GMVLPF P +++FDDV Y VDMP EM+
Sbjct: 811 KGKAGSNKETEMESVSAKK-GMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLK 869
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGY 904
V+ AFRPGVLTALMGV+GAGKTTLMDVLAGRKT GY+ G++ +SG+PKKQETFARISGY
Sbjct: 870 GVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGY 929
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGV 964
CEQ DIHSPQVTV ESL++SA+LRL+ EV + + MF+ R A+VGLPGV
Sbjct: 930 CEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGV 989
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIH
Sbjct: 990 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 1049
Query: 1025 QPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLE 1084
QPSIDIFEAFDEL L+KRGG IY GPLGR+S +++YFE PGV KI YNPATWMLE
Sbjct: 1050 QPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLE 1109
Query: 1085 VTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMA 1144
+S + E LG+DFA++YK+S L +RNKAL+++LS P G+ DL+F TQ++Q+ + Q +
Sbjct: 1110 ASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKS 1169
Query: 1145 CLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLF 1204
CLWKQ W+YWR+P Y VRF+ T TSL G++FW +G K + QDL +G++Y AV+F
Sbjct: 1170 CLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVF 1229
Query: 1205 IGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAM 1264
+GI N VQP+VA+ERTVFYRE+AAGMYS + YA +QV E+PY+ +Q Y LI+Y+M
Sbjct: 1230 VGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSM 1289
Query: 1265 MQFEWTAAKXXXXXXXXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYALWNVFSGFXX 1324
+ FEW A+K GMM VSLTPN +++I + FY ++N+FSGF
Sbjct: 1290 VGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFI 1349
Query: 1325 XXXXXXXWWKWYYWACPLAWTLYGLIASQYGDKEDRLE-----SGETVKHFLRSYFGFKH 1379
WW WYYW CP+AWT+YGLI SQYGD E + G TVK +++ +GF+
Sbjct: 1350 PRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFES 1409
Query: 1380 DXXXXXXXXXXXXXXXXXXXXGLGIKFLNFQRR 1412
D IK LNFQ R
Sbjct: 1410 DYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3889 (1374.1 bits), Expect = 0., P = 0.
Identities = 758/1403 (54%), Positives = 958/1403 (68%)
Query: 22 SASEGAFSRSSRRDEVD-DEEALKWAALEKLPTYNRLRKGLLSTPSGHGNEIDVDNLGLQ 80
S S FSR S D DEEALKWAALEKLPT+ RLR ++ P H + +DV LG+
Sbjct: 18 SNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIH-P--HEDLVDVTKLGVD 74
Query: 81 ERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPT 140
+RQ ID + KV + DNEKFL K +NR DRV I +P +EVRFE + +EA ++G RALPT
Sbjct: 75 DRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPT 134
Query: 141 FFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXX 200
N NI E L L ++ +TIL+ VSGII+P RMTLLLGPP+S
Sbjct: 135 LPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
Query: 201 XXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 260
D SL++ GRVTYNGH ++EFVPQ+T+AYISQ+DVH+G MTV+ETL FSARCQGVG+R
Sbjct: 195 GKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTR 254
Query: 261 YEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320
Y++L+EL RREK AGI P+P++D+FMK+ A ++S++TDY L+ILGLD+C DT+VGDE
Sbjct: 255 YDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDE 314
Query: 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
MIRGISGGQ+KRVTTGEM+VGP + FMDEISTGLDSSTT+QIV L++ + T L+
Sbjct: 315 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLM 374
Query: 381 SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSR 440
SLLQPAPE ++LFDDIIL+S+GQIVYQGPR+HVL FFE GFKCP+RKG ADFLQEVTSR
Sbjct: 375 SLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSR 434
Query: 441 KDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGV 500
KDQEQYWA+ ++PY +++V EF+ F++F VG L +L +P+D+ KSHPA+L KK+ V
Sbjct: 435 KDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSV 494
Query: 501 GKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAG 560
K + K C RELLLMKRN+F Y K Q+ +AL+ T++ RT+M + +DG +Y G
Sbjct: 495 PKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIG 554
Query: 561 ATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVW 620
A NG AE+++ I +LP+FYKQRDL F+P W ++ PT++ IPIS E VW
Sbjct: 555 ALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVW 614
Query: 621 VFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXXXXXXXX 680
V TYY+IGF P RF + L++ QMA +FR IAAT R++++ANT
Sbjct: 615 VTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLF 674
Query: 681 XXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSW--RKILPNTTEPLGVEVL 738
R +I WW WAYW SP+ Y +A+ VNE L W + N+T LG+ VL
Sbjct: 675 LLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTS-LGLAVL 733
Query: 739 QSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWXXXXXXXXXXXXXXLETITEA 798
+ FTD WYW+GVG +LGF +LFNI LAL+FLN
Sbjct: 734 EIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAENG 793
Query: 799 NQPK----RRGMVLPFEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXNSVSGAFRPGV 854
++ K +RGMVLPF P +++FD+V Y VDMP+EMK V+G FRPGV
Sbjct: 794 SKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGV 853
Query: 855 LTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQ 914
LTALMGV+GAGKTTLMDVLAGRKT GY+ G+I ISG+PK+QETFARISGYCEQNDIHSPQ
Sbjct: 854 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQ 913
Query: 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQRKR 974
VTV ESL+YSA+LRL EV + F+ + A+VGLPG+ GLSTEQRKR
Sbjct: 914 VTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKR 973
Query: 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1034
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF
Sbjct: 974 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1033
Query: 1035 DELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETAL 1094
DEL LLKRGGQ IY GPLG++S +I+YF+ GV KIK YNPATWMLEV+S + E L
Sbjct: 1034 DELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKL 1093
Query: 1095 GIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYW 1154
IDFA+ YK+S LY++NK L+K+LS P G+ DL+F T+++QS Q +CLWKQ +YW
Sbjct: 1094 EIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYW 1153
Query: 1155 RNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQ 1214
R P Y RF T ++ G++FW +GTK DL +G+MY AVLF+G+ N+ +VQ
Sbjct: 1154 RTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQ 1213
Query: 1215 PVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKX 1274
P++A+ER+VFYRERAA MYS + YA AQV+ EIPY+ +Q Y LI+YAMM FEWT AK
Sbjct: 1214 PLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKF 1273
Query: 1275 XXXXXXXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYALWNVFSGFXXXXXXXXXWWK 1334
GMM V+LTPN ++A+ + FY L+N+FSGF WW
Sbjct: 1274 FWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWI 1333
Query: 1335 WYYWACPLAWTLYGLIASQYGDKEDRLE-----SGETVKHFLRSYFGFKHDXXXXXXXXX 1389
WYYW CP+AWT+YGLI SQYGD ED ++ + T+K ++ +++G+ D
Sbjct: 1334 WYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVL 1393
Query: 1390 XXXXXXXXXXXGLGIKFLNFQRR 1412
GI+ LNFQ+R
Sbjct: 1394 VGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3616 (1278.0 bits), Expect = 0., P = 0.
Identities = 714/1397 (51%), Positives = 931/1397 (66%)
Query: 39 DEEALKWAALEKLP-----TYNR-LRKGLLSTP-SGH--GN---EIDVDNLGLQERQLLI 86
DEE L+WAA+ +LP T+N LR+ T SG+ GN IDV L +R++L+
Sbjct: 34 DEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLV 93
Query: 87 DKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCA 146
+ + D DN K L +K R DRVG+ +P+IEVRFE+L +EA+ G+RALPT N
Sbjct: 94 RQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSR 153
Query: 147 NIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSS 206
+ E L+SL I+ RK + ILK +SGII+PGRMTLLLGPP S D S
Sbjct: 154 DFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKS 213
Query: 207 LRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYE-MLT 265
L+ G +TYNG N+++F +RT+AYISQ D HI E+TVRETL F+ARCQG + +
Sbjct: 214 LKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMK 273
Query: 266 ELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325
+L R EK GI+P ++D FMKAA+ +G++ SV TDY+LK+LGLDVC+DTMVG++M+RG+
Sbjct: 274 DLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGV 333
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP 385
SGGQRKRVTTGEM VGP + FMDEISTGLDSSTTFQIV +R F+H++ T L++LLQP
Sbjct: 334 SGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQP 393
Query: 386 APEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQ 445
APE +DLFDD+IL+S+G +VYQGPRE V+ FFE +GF+ P RKGVADFLQEVTS+KDQ Q
Sbjct: 394 APETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQ 453
Query: 446 YWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKES 505
YWA+ +PY+F+ V + A AF++ G +L PFDK + P+AL K+ + E+
Sbjct: 454 YWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWEN 513
Query: 506 LKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATXXX 565
LK C RELLL+KR+ F+Y F+ Q+ + LVT T+F +T++H S G Y
Sbjct: 514 LKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFG 573
Query: 566 XXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTY 625
NG +E+ + I++LP+FYKQRD F+P+W+++ +W+ ++P S +E VW Y
Sbjct: 574 LVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVY 633
Query: 626 YVIGFDPNAGRFFRQYLLLLF-VNQMASALFRLIAATGRNLVVANTXXXXXXXXXXXXXX 684
+ +G P+AGRFFR Y+LLLF V+QMA LFR++A+ R++V+ANT
Sbjct: 634 FTVGLAPSAGRFFR-YMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGG 692
Query: 685 XXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWR--KILPNTTEPLGVEVLQSRG 742
+ DIK WW+W +W SPL Y Q AI VNEF W + +TT +G+ +L+ R
Sbjct: 693 FVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTT--IGLNLLKLRS 750
Query: 743 FFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWXXXXXXXXXXXXXXLET--ITEANQ 800
F T+ YWYW+G+ L+G+ ILFN LAL++LN ET + +ANQ
Sbjct: 751 FPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDDPNE-ETALVADANQ 809
Query: 801 --PKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXNSVSGAFRPGVLTAL 858
+++GM+LPF+P ++TF +V Y VDMP+EM+ ++VSG F PGVLTAL
Sbjct: 810 VISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTAL 869
Query: 859 MGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVY 918
+G +GAGKTTLMDVLAGRKT GY G+I ISG+PK+Q+TFARISGY EQNDIHSPQVTV
Sbjct: 870 VGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVE 929
Query: 919 ESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQRKRLTIA 978
ESL +SA LRL E+ + +K F+ R ALVGLPG GLSTEQRKRLTIA
Sbjct: 930 ESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIA 989
Query: 979 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1038
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 990 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1049
Query: 1039 LLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDF 1098
L+KRGGQ IY G LG HS L+ YF+G GV I +GYNPATWMLEVT+P+ E ++F
Sbjct: 1050 LMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEF 1109
Query: 1099 ADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPP 1158
AD+YK S+ +R +A IK LS P GS+ + F ++Y+Q+ +Q + CLWKQ YWR+P
Sbjct: 1110 ADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPE 1169
Query: 1159 YTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVA 1218
Y VR + TTI + G +FWD+G+K T QDL MG++Y+A LF+G+ NA +VQP+V+
Sbjct: 1170 YNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVS 1229
Query: 1219 IERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKXXXXX 1278
IERTVFYRE+AAGMY+ + YA AQ L+EIPYI Q + YG+I Y + FE T +K
Sbjct: 1230 IERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYL 1289
Query: 1279 XXXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYALWNVFSGFXXXXXXXXXWWKWYYW 1338
GMMAV LTPN H++A++S FY+LWN+ SGF WW W+Y+
Sbjct: 1290 VFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYY 1349
Query: 1339 ACPLAWTLYGLIASQYGDKEDRLESG---ETVKHFLRSYFGFKHDXXXXXXXXXXXXXXX 1395
CP+AWTL G+I SQ GD E + TVK F+ YFG+K +
Sbjct: 1350 ICPVAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCAL 1409
Query: 1396 XXXXXGLGIKFLNFQRR 1412
L +K+LNFQRR
Sbjct: 1410 FFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3455 (1221.3 bits), Expect = 0., P = 0.
Identities = 687/1396 (49%), Positives = 907/1396 (64%)
Query: 40 EEALKWAALEKLPTYNRLRKGLLS-----TPSGHGNEIDVDNLGLQERQLLIDKLVKVPD 94
E AL+WA +++LPT+ RLR L+ T G +DV LG ER L+I+KL+K +
Sbjct: 22 EHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGK-KVVDVTKLGAMERHLMIEKLIKHIE 80
Query: 95 VDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEA-YVGSRALPTFFNFCANIIEGLL 153
DN K L K++ R +RVG+ P IEVR+EHL VEA V +ALPT +N ++ LL
Sbjct: 81 NDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFLDLL 140
Query: 154 NSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRLYGRV 213
L+ + + + +I IL VSGII PGR+TLLLGPP +++L+ YG +
Sbjct: 141 K-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEI 199
Query: 214 TYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
+YNGH ++E VPQ+T+AYISQHD+HI EMT RET+ FSARCQGVGSR +++ E+++REK
Sbjct: 200 SYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKD 259
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
GI PDP++D +MKA + +G + S+ TDYILKILGLD+CA+T+VG+ M RGISGGQ+KR+
Sbjct: 260 GGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRL 319
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393
TT EM+VGP +A FMDEI+ GLDSST FQI+ SL+Q HI T +SLLQPAPE+YDLF
Sbjct: 320 TTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLF 379
Query: 394 DDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEP 453
DDI+L+++G+IVY GPR+ VL+FFE GF+CPERKGVADFLQEV S+KDQ QYW ++ P
Sbjct: 380 DDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLP 439
Query: 454 YRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRE 513
+ FV+V + F+ +G+ + + L P+D +K+H AL+ Y + K E +AC SRE
Sbjct: 440 HSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISRE 499
Query: 514 LLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATXXXXXXXXXNG 573
LLMKRN FVY FK FQL A++TMT+F RT+M D + G Y +G
Sbjct: 500 FLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSYMSCLFFATVVLLVDG 558
Query: 574 MAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPN 633
+ E+SMT+ +L +FYKQ+ L FYP+WAYA P + KIP+SF E VW TYYVIG+ P
Sbjct: 559 IPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPE 618
Query: 634 AGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXXXXXXXXXXXXXXXNREDIK 693
RFFRQ+++L V+ + ++FR IAA + V A T D+
Sbjct: 619 PYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMP 678
Query: 694 SWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLG 753
W W +W +P+ YA+ + VNEFL W+K+ P T LG +L+SRG D Y YW+
Sbjct: 679 GWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTILESRGLNYDDYMYWVS 737
Query: 754 VGALLGFIILFNIGFALALSFLNWXXXXX-XXXXXXXXXLETITEANQPKRR-------- 804
+ ALLG I+FN F LALSFL L+ +++ K +
Sbjct: 738 LSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSSVKKNKPLDSSIKT 797
Query: 805 ----G-MVLPFEPHSLTFDDVTYSVDMPQEMKXXXXXXXXXXXXNSVSGAFRPGVLTALM 859
G M+LPF+P ++TF D+ Y VD+P EMK + ++GAFRPGVLTALM
Sbjct: 798 NEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALM 857
Query: 860 GVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYE 919
G++GAGKTTL+DVLAGRKT+GY+ G I ISG+ K QETFAR+SGYCEQ DIHSP +TV E
Sbjct: 858 GISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEE 917
Query: 920 SLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXXRQALVGLPGVNGLSTEQRKRLTIAV 979
SL+YSAWLRL PE++ +T+ F+ + ALVG+ GV+GLSTEQRKRLT+AV
Sbjct: 918 SLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAV 977
Query: 980 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1039
ELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT+VCTIHQPSI IFEAFDEL L
Sbjct: 978 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVL 1037
Query: 1040 LKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFA 1099
LKRGG+ IY GPLG+HSS +I+YF+ PGV+KI++ YNPATWMLEVTS S ET L +DFA
Sbjct: 1038 LKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFA 1097
Query: 1100 DIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPY 1159
IY S+LY+ N L+K+LSKP GS DLHF +AQ+++ Q +CLWK SYWR+P Y
Sbjct: 1098 KIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSY 1157
Query: 1160 TAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAI 1219
+R T I+S FG +FW+ G K+ QQ+LF +G++Y VLF+GI N +
Sbjct: 1158 NLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFET 1217
Query: 1220 ERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKXXXXXX 1279
ER V YRER AGMYS AYA AQV+ EIPYIF+Q+ + +++Y M+ F + +K
Sbjct: 1218 ERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLY 1277
Query: 1280 XXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYALWNVFSGFXXXXXXXXXWWKWYYWA 1339
M +S+TPN ++AI+ F+ +N+F+GF WW W+Y+
Sbjct: 1278 AMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYI 1337
Query: 1340 CPLAWTLYGLIASQYGDKEDRLES-GET--VKHFLRSYFGFKHDXXXXXXXXXXXXXXXX 1396
P +WTL +SQYGD ++ + GET V FL YFGF HD
Sbjct: 1338 TPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIAL 1397
Query: 1397 XXXXGLGIKFLNFQRR 1412
+ LNFQ+R
Sbjct: 1398 ATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3404 (1203.3 bits), Expect = 0., P = 0.
Identities = 676/1361 (49%), Positives = 882/1361 (64%)
Query: 72 IDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEA 131
+DV LG ER L+I+KL+K + DN K L K++ R DRVG+ +P IEVR+E LKV AE
Sbjct: 93 VDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAEC 152
Query: 132 -YVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPAS 190
V +ALPT +N ++ L+ L + + I I+ V+GII+PGR+TLLLGPP+
Sbjct: 153 EVVEGKALPTLWNTAKRVLSELVK-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSC 211
Query: 191 XXXXXXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAF 250
+++L+ G ++YNGH +DEFVPQ+T+AYISQ+D+HI EMTVRET+ F
Sbjct: 212 GKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDF 271
Query: 251 SARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310
SARCQGVGSR +++ E+++REK GI PD ++D +MKA + EG + S+ TDYILKILGLD
Sbjct: 272 SARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLD 331
Query: 311 VCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQF 370
+CA+ ++GD M RGISGGQ+KR+TT EM+VGP +A FMDEI+ GLDSST FQIV SL+QF
Sbjct: 332 ICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQF 391
Query: 371 IHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGV 430
HI T L+SLLQPAPE+YDLFDDI+L++ G+IVY GPR VL FFE GF+CPERKGV
Sbjct: 392 AHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGV 451
Query: 431 ADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHP 490
ADFLQEV S+KDQ QYW +++ PY FV+V+ + F+ S+G+ + D L P+D++KSH
Sbjct: 452 ADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHK 511
Query: 491 AALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRD 550
AL+ Y + E AC SRE LLMKRN FVY FK QL A +TMT+F RT+M D
Sbjct: 512 DALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID 571
Query: 551 SVTDGVIYAGATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKI 610
+ G Y A +G E+SMT +L +FYKQ+ L FYP+WAYA P + K+
Sbjct: 572 -IIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKV 630
Query: 611 PISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANT 670
P+SF E VW +YYVIG+ P A RFF+Q++LL V+ + ++FR +AA + +V + T
Sbjct: 631 PLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASIT 690
Query: 671 XXXXXXXXXXXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTT 730
+ +W W +W +PL Y + + VNEFL W ++ PN
Sbjct: 691 AGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF 750
Query: 731 EPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWXXXXXXXXXXXXX 790
LG +LQ+RG + Y YW+ + ALLGF +LFNI F LAL+FL
Sbjct: 751 T-LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKL 809
Query: 791 X----LETITEANQPKRRG------------MVLPFEPHSLTFDDVTYSVDMPQEMKXXX 834
E TE + +++ MVLPF+P ++TF D+ Y VDMP EM+
Sbjct: 810 SELQGTEKSTEDSSVRKKTTDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQG 869
Query: 835 XXXXXXXXXNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894
+ ++GAFRPG+LTALMGV+GAGKTTL+DVLAGRKT+GY+ G+I ISG+PK
Sbjct: 870 YDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKV 929
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIXXXXXXXXXXXX 954
QETFAR+SGYCEQ DIHSP +TV ES++YSAWLRL+PE+D+ T+ F+
Sbjct: 930 QETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEI 989
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1014
+ +LVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N D
Sbjct: 990 KDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 1049
Query: 1015 TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKN 1074
TGRT+VCTIHQPSIDIFEAFDEL LLKRGG+ IY GPLG+HS H+I+YFE P + KIK+
Sbjct: 1050 TGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKD 1109
Query: 1075 GYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQY 1134
+NPATWML+V+S S E LG+DFA IY S LY+RN L+K LS+P GS D+ F +
Sbjct: 1110 NHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTF 1169
Query: 1135 AQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNA 1194
AQS++ Q + LWK SYWR+P Y +R + T ++SL FGA+FW G + QQ +F
Sbjct: 1170 AQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTV 1229
Query: 1195 MGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQA 1254
G++Y VLF+GI N + ER V YRER AGMYS AYA QV+ EIPYIF+QA
Sbjct: 1230 FGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQA 1289
Query: 1255 VTYGLIVYAMMQFEWTAAKXXXXXXXXXXXXXXXXXXGMMAVSLTPNHHISAIVSFGFYA 1314
+ ++ Y M+ F +A K M VS+TPN ++AI+ FY
Sbjct: 1290 AEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYV 1349
Query: 1315 LWNVFSGFXXXXXXXXXWWKWYYWACPLAWTLYGLIASQYGDKEDRLES-GE--TVKHFL 1371
+N+FSGF WW W Y+ P +WTL G I+SQYGD + + G+ TV FL
Sbjct: 1350 GFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFL 1409
Query: 1372 RSYFGFKHDXXXXXXXXXXXXXXXXXXXXGLGIKFLNFQRR 1412
+ YFGF HD + LNFQRR
Sbjct: 1410 KDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2244 (795.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 424/760 (55%), Positives = 549/760 (72%)
Query: 24 SEGAFSRSSRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGN----EIDVDNLGL 79
++ F RS RR+E DD E L+WAALE+LPTY+RLRKG+L +G ++DV NL
Sbjct: 42 TDDVFGRSDRREE-DDVE-LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAP 99
Query: 80 QERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALP 139
+E++ L++ ++K + DNEKFL +L+ R DRVGI +P+IEVR+E+L VE + SRALP
Sbjct: 100 KEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALP 159
Query: 140 TFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXXX 199
T FN N IE +L ++L S+K+ I ILK +SGII+P RMTLLLGPP+S
Sbjct: 160 TLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQAL 219
Query: 200 XXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 259
D +L++ GR+TY GH EFVPQ+T AYISQHD+H GEMTVRE+L FS RC GVG+
Sbjct: 220 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGT 279
Query: 260 RYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319
RY++LTEL+RRE+ AGIKPDP++D FMK+ A GQE S+VTDY+LK+LGLD+CADT+VGD
Sbjct: 280 RYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGD 339
Query: 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTL 379
M RGISGGQRKR+TTGEMLVGPA A FMDEISTGLDSSTTFQI +RQ +HI T +
Sbjct: 340 VMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMV 399
Query: 380 ISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTS 439
ISLLQPAPE ++LFDDIIL+S+GQIVYQG R++VLEFFE+MGFKCPERKG+ADFLQEVTS
Sbjct: 400 ISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTS 459
Query: 440 RKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYG 499
+KDQEQYW +E PY +V+V +F+ F SF GQ L E +P+DK K+HPAAL T+KYG
Sbjct: 460 KKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYG 519
Query: 500 VGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYA 559
+ K+ KAC RE LLMKRNSFVY FK Q+T ++L+ MT++FRT+MH +V DG +
Sbjct: 520 ISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFY 579
Query: 560 GATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAV 619
GA NGMAE++ T+ +LP+F+KQRD FYP WA+A P ++ KIP+S +E +
Sbjct: 580 GALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVI 639
Query: 620 WVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXXXXXXX 679
W+ TYY IGF P+A RFFRQ L VNQMA +LFR + A GR V+AN+
Sbjct: 640 WIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVV 699
Query: 680 XXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNT---TEPLGVE 736
+++DI SW W Y+ SP+MY Q A+++NEFL W +T + +G
Sbjct: 700 FVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEV 759
Query: 737 VLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN 776
+L+SRGFFT+ YW+W+ +GALLGF +LFN + +AL +LN
Sbjct: 760 LLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLN 799
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2193 (777.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 406/761 (53%), Positives = 545/761 (71%)
Query: 20 WGSASEGAFSRS-SRRDEVDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGNEIDVDNLG 78
W SA E AFSRS S +DE++DEE L+WAAL++LPTY+R+R+G+ G EI + NL
Sbjct: 2 WNSA-ENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 79 LQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRAL 138
E++LL+D+LV + D E+F +++ RFD V + P+IEVRF++L VE+ +VGSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 139 PTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXXXXXX 198
PT NF N+ EGLL +++++ ++ +TIL G+SG+IRP R+TLLLGPP+S
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 199 XXXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 258
++L+ G++TYNG+++ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 259 SRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318
+Y+ML ELARREK AGI PD DLD+FMK+ A G E S+V +Y++KILGLD CADT+VG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
DEMI+GISGGQ+KR+TTGE+LVGPA+ FMDEIS GLDSSTT QI+ +R H L GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVT 438
+ISLLQP+PE Y+LFDD+IL+S+GQI+YQGPR+ VL+FF +GF CP+RK VADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 439 SRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKY 498
S+KDQ+QYW+ PYR+V +FA+AF+S+ G+ L +L +PFDK +H AAL+T +Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 499 GVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIY 558
GV K E LK + + LMK+N+F+Y FK QL +AL+TMT+F RT MH +++ DG IY
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 559 AGATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVA 618
G+ NG E+ M +AKLP+ YK RDL FYPSWAY P+W+ IP S +E A
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 619 VWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXXXXXX 678
WV TYY IG+DP RF +Q+LL ++QM+ LFR++ + GR+++VANT
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 679 XXXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPN-TTEPLGVEV 737
+R+ I SWWIW YW SPLMYAQNA VNEFLGH+W+K N T++ LG+ +
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 738 LQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN-W 777
L+ R F+ +YWYW+GV ALLG+ +LFNI F L L+ LN W
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPW 761
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2155 (763.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 413/764 (54%), Positives = 536/764 (70%)
Query: 25 EGAFSRSSRRDEV--DDEEALKWAALEKLPTYNRLRKGLLST---PSGHGN-----EIDV 74
E FS SRR + DDEEALKWAA+EKLPTY+RLR L++ +GN E+DV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 75 DNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVG 134
L ++RQ ID + KV + DNE+ L KL+NR DRVGI +P +EVR+EHL ++A+ Y G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 135 SRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASXXXX 194
+R+LPT N N+ E L + I ++K +TILK +SG+I+PGRMTLLLGPP+S
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 195 XXXXXXXXXDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 254
D SL++ G +TYNG+ +DEFVP++T+AYISQ+D+H+G MTV+ETL FSARC
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 255 QGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCAD 314
QGVG+RY++L ELARREK AGI P+ D+D+FMKA+A +G + S+VTDY LKILGLD+C D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL 374
T+VGD+M+RGISGGQ+KRVTTGEM+VGP + FMDEISTGLDSSTTFQIV L+Q +H+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 375 RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
T L+SLLQPAPE +DLFDDIIL+S+GQIVYQGPR+++LEFFE GFKCPERKG ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 435 QEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALT 494
QEVTS+KDQEQYW N PY ++ V EFA ++SF VG + +EL +PFDK++ H AAL
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 495 TKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTD 554
KY V K+E LK+C +E LLM+RN+F Y FK Q+ IA +T TLF RT+M+ + D
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 555 GVIYAGATXXXXXXXXXNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISF 614
+Y GA NG AE++M +++LP+FYKQRDL FYPSW ++ PT++ IP S
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 615 VEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTXXXX 674
+E W+ TYY IGF P+A RFF+Q+LL+ + QMA++LFRLIA+ R +++ANT
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 675 XXXXXXXXXXXXXNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILP--NTTEP 732
+ I WW WAYW SPL YA N ++VNE W + N+T
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK 752
Query: 733 LGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN 776
LG VL + + WYW+ VGALL F LFNI F LAL++LN
Sbjct: 753 LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLN 796
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6047 | 0.9702 | 0.9377 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6981 | 0.9851 | 0.9547 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.7045 | 0.9985 | 0.9908 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6906 | 0.9886 | 0.9687 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7288 | 0.9922 | 0.9769 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7281 | 0.9879 | 0.9714 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6974 | 0.9851 | 0.9547 | N/A | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3041 | 0.8031 | 0.8539 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5393 | 0.9936 | 0.9695 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1412 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-99 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-91 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-70 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-52 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-45 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-32 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-19 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-17 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-16 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-16 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-14 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-13 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 9e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-12 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-10 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-10 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-10 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-09 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-09 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-09 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-08 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-08 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-07 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-07 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-06 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-06 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-06 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 7e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 9e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-04 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-04 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.001 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 0.001 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.001 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.001 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.002 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 0.002 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.002 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.003 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 0.003 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.003 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.004 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.004 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2064 bits (5349), Expect = 0.0
Identities = 887/1460 (60%), Positives = 1087/1460 (74%), Gaps = 59/1460 (4%)
Query: 12 SLRRSASRWGSASEGAFS---RSSRRDEV--DDEEALKWAALEKLPTYNRLRKGLLST-- 64
S+ RS SR E FS +S RR +DEEALKWAA+EKLPTY+RLR ++ +
Sbjct: 11 SISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFV 70
Query: 65 -PSGHGN-----EIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEI 118
+GN E+DV L +RQ ID + KV + DNEKFL K +NR DRVGI +P +
Sbjct: 71 ENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTV 130
Query: 119 EVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRP 178
EVRFEHL VEA+ Y+GSRALPT N NI E L L I ++K +TILK SGII+P
Sbjct: 131 EVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKP 190
Query: 179 GRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVH 238
RMTLLLGPP+SGKTTLLLALAGKLD SL++ G +TYNG+ ++EFVP++T+AYISQ+DVH
Sbjct: 191 SRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250
Query: 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASV 298
+G MTV+ETL FSARCQGVG+RY++L+ELARREK AGI P+ ++D+FMKA A EG ++S+
Sbjct: 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSL 310
Query: 299 VTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSS 358
+TDY LKILGLD+C DT+VGDEMIRGISGGQ+KRVTTGEM+VGP + FMDEISTGLDSS
Sbjct: 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 370
Query: 359 TTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFE 418
TT+QIV L+Q +H+ T L+SLLQPAPE +DLFDDIIL+S+GQIVYQGPR+H+LEFFE
Sbjct: 371 TTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFE 430
Query: 419 FMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDE 478
GFKCPERKG ADFLQEVTS+KDQEQYWA++ +PYR+++V EFA+ F+SF VG L +E
Sbjct: 431 SCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENE 490
Query: 479 LGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVT 538
L +PFDK++SH AAL KY V K E LKAC +E LLMKRN+FVY FK Q+ +A +
Sbjct: 491 LSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIA 550
Query: 539 MTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPS 598
T+F RT+MH + DG +Y GA F +I+ MFNG AE+++ I +LP+FYKQRDL F+P
Sbjct: 551 STVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPP 610
Query: 599 WAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLI 658
W + PT++ IPIS +E VWV TYY IGF P A RFF+Q LL+ + QMA+ +FRLI
Sbjct: 611 WTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLI 670
Query: 659 AATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFL 718
A+ R +++ANT GA LLL++ LGGF+L + +I +WW WAYW SPL Y NA+ VNE
Sbjct: 671 ASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMF 730
Query: 719 GHSW-RKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN- 776
W K+ + + LG VL FTD WYW+GVGALLGF ILFN+ F LAL++LN
Sbjct: 731 APRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790
Query: 777 ---------------------------WSADDIRRRDSSSQSL-----------ETITEA 798
SAD R+ + Q + ++ A
Sbjct: 791 LGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAA 850
Query: 799 NQ-PKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTA 857
N +RGMVLPF P +++FDDV Y VDMP EMK +GV +DRL LL V+GAFRPGVLTA
Sbjct: 851 NGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTA 910
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTV 917
LMGV+GAGKTTLMDVLAGRKT GY+ G+I ISG+PKKQETFARISGYCEQNDIHSPQVTV
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970
Query: 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTI 977
ESL+YSA+LRL EV + + MF++EVMELVEL+ L+ A+VGLPGV GLSTEQRKRLTI
Sbjct: 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTI 1030
Query: 978 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1037
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1031 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1090
Query: 1038 FLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGID 1097
L+KRGGQ IY GPLGR+S +I+YFE PGV KIK YNPATWMLEV+S + E LGID
Sbjct: 1091 LLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGID 1150
Query: 1098 FADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNP 1157
FA+ YKSS LY+RNKAL+K+LS P PG+ DL+F TQY+QS + Q +CLWKQ W+YWR+P
Sbjct: 1151 FAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSP 1210
Query: 1158 PYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVV 1217
Y VRF T +L G +FW +GTK + DL +G+MY AVLF+GI N VQP+V
Sbjct: 1211 DYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMV 1270
Query: 1218 AIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWY 1277
A+ERTVFYRERAAGMYS + YA AQV+ EIPY+ +Q Y LIVYAM+ FEWTAAKFFW+
Sbjct: 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWF 1330
Query: 1278 LFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYY 1337
F FF+FLYFT+YGMM VSLTPN ++AI + FY L+N+FSGF IPRP+IP WW WYY
Sbjct: 1331 YFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY 1390
Query: 1338 WACPLAWTLYGLIASQYGDKEDRLE-----SGETVKHFLRSYFGFKHDFLGVVALVVVAF 1392
W CP+AWT+YGLI SQYGD ED ++ T+K +++ ++G+ DF+G VA V+V F
Sbjct: 1391 WICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGF 1450
Query: 1393 PMLFAFVFGLGIKFLNFQRR 1412
+ FAF+F I+ LNFQ R
Sbjct: 1451 TVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1184 bits (3065), Expect = 0.0
Identities = 421/1435 (29%), Positives = 651/1435 (45%), Gaps = 161/1435 (11%)
Query: 93 PDVDNEKFLLKLKNRFDRVGISMPE--IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIE 150
+ + + ++ + D I + V +++L A S PTF N I+
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILT 59
Query: 151 GLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY 210
L K ILK + G+I+PG +T++LG P SG +TLL +A D
Sbjct: 60 RGFRKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGV 118
Query: 211 -GRVTYNGHNMDEFVPQRTA--AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTEL 267
G +TY+G +E Y ++ DVH +TV ETL F+ARC+ +R + ++
Sbjct: 119 EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178
Query: 268 ARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISG 327
+ + D + GL +T VG++ +RG+SG
Sbjct: 179 EYAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSG 212
Query: 328 GQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAP 387
G+RKRV+ E +G A+ D + GLDS+T + + +L+ +IL T L+++ Q +
Sbjct: 213 GERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQ 272
Query: 388 EAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYW 447
+AY+LFD +I++ +G +Y GP + ++FE MGFKCP+R+ ADFL +TS + Q
Sbjct: 273 DAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIK 331
Query: 448 ANKEEP-YRFVTVKEFADAFQSFSVGQILGDELGIPFDKT--------------KSHP-A 491
E+ R T +EF +++ L E+ D+
Sbjct: 332 PGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389
Query: 492 ALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDS 551
+ Y V +K C +R L MK N F +F +AL+ ++F+ +
Sbjct: 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---N 446
Query: 552 VTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIP 611
+D GA FF I+ F+ + EI+ PI K R Y A A + I +IP
Sbjct: 447 TSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 612 ISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTF 671
+E V+ Y+++ F AGRFF L+L S LFR I A + L A T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 672 GAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSW--------- 722
A LL L GF + R + W W Y+ +PL YA ++MVNEF G +
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 723 ---------RKILPNTTEPLGVEVLQSRGFFTDSY-----WYWLGVGALLGFIILFNIGF 768
K+ G + + + S+ W G ++GF + F +
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVY 686
Query: 769 ALA-------------LSFLNWSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSL 815
L L F S ++ +S S N + G VL +
Sbjct: 687 ILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSAS-----NKNDIE-AGEVLGSTDLTD 740
Query: 816 TFDDVTYSVDMPQEMKLR-----------GVLDDRLVLLNSVSGAFRPGVLTALMGVTGA 864
DDV DM +E + ++ V+LN+V G +PG LTALMG +GA
Sbjct: 741 ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA 800
Query: 865 GKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYS 924
GKTTL++VLA R TTG +TG + +F R GY +Q D+H P TV ESL +S
Sbjct: 801 GKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFS 860
Query: 925 AWLRLSPEVDSKTRKM-FIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVA 983
A+LR V SK+ KM ++EEV++L+E+ A+VG+PG GL+ EQRKRLTI VELVA
Sbjct: 861 AYLRQPKSV-SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVA 918
Query: 984 NP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042
P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD L LL++
Sbjct: 919 KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 1043 GGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIY 1102
GGQ +Y G LG +S +I YFE + G K NPA WMLEV + D+ +++
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVW 1037
Query: 1103 KSSELYRRNKALIKDLSKPAPGSKDLHFDT---QYAQSFFTQCMACLWKQRWSYWRNPPY 1159
++S Y+ K + L ++D + +YA S + Q LW+ YWR P Y
Sbjct: 1038 RNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDY 1097
Query: 1160 TAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAI 1219
+F T +L G F+ +GT + Q L N M +++ A + L + P VA
Sbjct: 1098 LYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQ 1154
Query: 1220 ERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAK------ 1273
RER + +S +A+ AQ+ +EIPY V + I Y + F W A+K
Sbjct: 1155 RDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHE 1214
Query: 1274 -FFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIW 1332
+ FLYF+ G M +S PN +A+++ + + F G + P R+P +
Sbjct: 1215 RGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF 1274
Query: 1333 WKWYYWACPLAWTLYGLIASQYGDKEDRLE----------SGETVKHFLRSY-------- 1374
W + Y P + + L+++ D + SG+T +++ Y
Sbjct: 1275 WIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYL 1334
Query: 1375 -------------FGFKHDFLGVVALVVV----AFPMLFAFVFGLGIKFLNFQRR 1412
+ + +DFL ++ F + AF+F I + F
Sbjct: 1335 LNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = 2e-99
Identities = 110/239 (46%), Positives = 143/239 (59%), Gaps = 47/239 (19%)
Query: 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
LT+ ++ Y+V + + LLN++SG +PG LTALMG +GAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 872 VLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
VLAGRKT G +TG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L LLKRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 3e-91
Identities = 180/601 (29%), Positives = 289/601 (48%), Gaps = 55/601 (9%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-VTGNITISGYPKKQET 897
R LL +VSG +PG L A+MG +GAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
IS Y +Q+D+ P +TV E L++ A LR+ V K ++ ++EV++ + L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 958 LVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFE--GNPGVSKIKN 1074
+T++CTIHQPS ++FE FD++ L+ G+ Y+G + +F G+P
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDLGHP----CPE 267
Query: 1075 GYNPATWMLEV--TSPSQETALGIDFADI---YKSSELYRRNKALIKDLSKPAPGSKDLH 1129
YNPA + ++V P E I + S++ R S A G L
Sbjct: 268 NYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGG---LV 324
Query: 1130 FDTQ------YAQSFFTQCMACLWKQRW-SYWRNPPYTAVRFLSTTITSLTFGAMFWDMG 1182
D++ Y S++TQ L K+ W S R+P VR + T +T++ G ++ G
Sbjct: 325 KDSENMEGIGYNASWWTQ-FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL--G 381
Query: 1183 TKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQ 1242
+T Q+ + N G+++ + + N V V E VF RE +G+Y AY A+
Sbjct: 382 QGLT-QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAK 440
Query: 1243 VLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNH 1302
+ E+P + + I Y M+ A F +LF + T +G + +
Sbjct: 441 TIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSS- 499
Query: 1303 HISAIVSFG--FYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLY---GLIASQYGD- 1356
S ++ G F + +F GF I IP+++KW + L+W Y GL+ +Q+ D
Sbjct: 500 -TSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDV 555
Query: 1357 KEDRLESGETVKHFLRSY------FGFKH-----DFLGVVALVVVAFPMLFAFVFGLGIK 1405
S T S F++ D +G+V L+ F +L F + I+
Sbjct: 556 DNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFF-FRLLAYFALRIRIR 614
Query: 1406 F 1406
Sbjct: 615 R 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 1e-73
Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 45/237 (18%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
+L+F ++T +V LL +VSG +PG LTA+MG +GAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 874 AGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEV 933
AGR+T V+G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 934 DSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 993
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 994 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L LL + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 2e-70
Identities = 159/659 (24%), Positives = 283/659 (42%), Gaps = 77/659 (11%)
Query: 136 RALPTFFNFCANI-IEGLLNSLNILSSRKKHI-TILKGVSGIIRPGRMTLLLGPPASGKT 193
R F + + L++ L R++ +LK VSG+ +PG + ++G +GKT
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKT 65
Query: 194 TLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSAR 253
TL+ ALA + ++ G V NG +D + +AY+ Q D+ I +TVRE L F A
Sbjct: 66 TLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
Query: 254 CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313
M + ++EK + D +L+ LGL CA
Sbjct: 126 -------LRMPRRVTKKEKRERV------------------------DEVLQALGLRKCA 154
Query: 314 DTMVGDE-MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIH 372
+T +G ++G+SGG+RKR+ L+ F DE ++GLDS + +V L+
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA- 213
Query: 373 ILRGTTLI-SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVA 431
+G T+I ++ QP+ E ++LFD IIL+++G++ Y G + + FF +G CPE A
Sbjct: 214 -QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPA 272
Query: 432 DFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQ--------ILGDELGIPF 483
DF +V + E R +++ D+F +G+ G G+
Sbjct: 273 DFYVQVLAVIP------GSENESR-ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVK 325
Query: 484 DKTKS----HPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTM 539
D + A+ T+ Y + K+ L LL + +L Q A++
Sbjct: 326 DSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKV---------RLIQTMMTAILIG 376
Query: 540 TLFFRTKMHRDSV--TDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYP 597
++ + + V +G ++ F+ M N I++ A+LP+F ++ Y
Sbjct: 377 LIYLGQGLTQKGVQNINGALF----LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432
Query: 598 SWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRL 657
AY I ++P+ + A++ TY++IG A F L+ V +A++ L
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYL 492
Query: 658 IAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEF 717
I+ + +A T G ++ GGF +N + I ++ W + S Y +++N++
Sbjct: 493 ISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552
Query: 718 LGHSWRKILPNTTE----PLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALAL 772
+ T G +L++ F +L + L+ I F + AL
Sbjct: 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 3e-52
Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 6/210 (2%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT-GNITISGYPKKQETFAR 900
+LN VS G + A++G +G+GKTTL+D ++GR G T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
Y Q+DI P +TV E+L Y+A LRL P S + E + L +L L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
TIHQP D+F FD + LL G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 6e-52
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 7/216 (3%)
Query: 1140 TQCMACLWKQRWSYWRNPPYT-AVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSM 1198
TQ A L ++ WR+P R + + +L FG +F ++ T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1199 YTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYG 1258
+ ++LF + + PV ER V RE A+ +YS AY A++L+E+P +QA+ +
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1259 LIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNV 1318
LIVY M+ + +FF +L + T L + G+ +L P+ ++ + +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1319 FSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQY 1354
SGF IP +P W +W Y+ PL + + L A+++
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 9e-45
Identities = 163/643 (25%), Positives = 290/643 (45%), Gaps = 90/643 (13%)
Query: 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLV-----------------LLNSVSGAFRPGV 854
P +L F DV Y V + MK +G R++ +LN V+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 855 LTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQ 914
+ A++G +G+GK+TL++ LAGR TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974
+TV E+L++ + LRL + + + + E V+ + L ++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1034
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1035 DELFLLKRGGQEIYVGPLGRHSSHLIKYFEG---NPGVSKIKNGYNPATWMLEVTS---- 1087
D + +L G+ ++ G S + YFE +P NPA ++L++ +
Sbjct: 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFP-----MNPADFLLDLANGVCQ 324
Query: 1088 -----------------PSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKD-LH 1129
S T L + S + N + S S D +
Sbjct: 325 TDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRIS 384
Query: 1130 FDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQ 1189
T + Q F+ + K+R ++ + +R +L G M+W + +
Sbjct: 385 ISTWFNQ--FSILLQRSLKER----KHESFNTLRVFQVIAAALLAGLMWWH-----SDFR 433
Query: 1190 DLFNAMGSMYTAVLFIGIL---NAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIE 1246
D+ + +G ++ +F G+ N+V V P ER +F +ERA+GMY+ +Y A+++ +
Sbjct: 434 DVQDRLGLLFFISIFWGVFPSFNSVFVFPQ---ERAIFVKERASGMYTLSSYFMARIVGD 490
Query: 1247 IPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGM-MAVSLTPNHHIS 1305
+P + + + Y M + F L + L G+ + ++ S
Sbjct: 491 LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAS 550
Query: 1306 AIVSFGFYALWNVFSG--FIIPRPRIPIWWKWYYWACPLAWTLYG---LIASQYGDKEDR 1360
IV+ A V +G ++ P W K+ ++ T Y LI QYG+ + R
Sbjct: 551 TIVTVTMLAF--VLTGGFYVHKLPSCMAWIKY------ISTTFYSYRLLINVQYGEGK-R 601
Query: 1361 LES--GETVKHFL-RSYFGF-KHDFLGVVALVVVAFPMLFAFV 1399
+ S G ++ H R+ F + D G ++ ++F FV
Sbjct: 602 ISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFV 644
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-43
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 8/214 (3%)
Query: 506 LKACNSRELLLMKRNSFVYFF-KLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFF 564
LKA RE L R+ + +L Q +ALV T+F D+ G+ G FF
Sbjct: 3 LKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLLFF 58
Query: 565 IIIMIMFNGMAEISMT-IAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFS 623
I+ F+ + IS I + + ++ Y AY + ++PIS ++ +++
Sbjct: 59 SILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLI 118
Query: 624 TYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALG 683
Y+++G + RFF L+LL AS L IAA + A+ G LL L L
Sbjct: 119 VYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLS 176
Query: 684 GFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEF 717
GF + + + W W Y+ +PL YA A+ NEF
Sbjct: 177 GFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-43
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 36/241 (14%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
IL VS + G++ +LG SGKTTLL A++G+++ G++ +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
AY+ Q D+ + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
A T +G +++GISGG+R+RV+ L+ +
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQ 407
+DE ++GLDS T +V++L Q R ++++ QP + + LFD I+L+S G+IVY
Sbjct: 167 LDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225
Query: 408 G 408
G
Sbjct: 226 G 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 7e-43
Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 19/251 (7%)
Query: 832 LRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISG 890
L L+ VS PG + L+G GAGKTTL+ +LAG K T G I + G
Sbjct: 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLG 66
Query: 891 YP--KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
Y K+ R GY Q P++TV E+L + A L + +++ R IEE++EL
Sbjct: 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLEL 123
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
L V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + +
Sbjct: 124 FGLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPG 1068
+R G + + E D + +L G I G L + F G
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP----EELKEKFGGKGV 233
Query: 1069 VSKIKNGYNPA 1079
+ A
Sbjct: 234 IELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-40
Identities = 40/91 (43%), Positives = 59/91 (64%)
Query: 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGT 377
G+E +RGISGG+RKRV+ E LV A D + GLDSST +I+ +R +L+ T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 378 TLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
T +SL Q + E YDLFD ++++ +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-40
Identities = 140/554 (25%), Positives = 253/554 (45%), Gaps = 60/554 (10%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
TIL GV+G+ PG + +LGP SGK+TLL ALAG++ + G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
RT +++Q D+ +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG-EMLVGPAQA 345
+ QE +V + ++ LGL C +T++G+ IRGISGG+RKRV+ EML+ P+
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-SLLQPAPEAYDLFDDIILISDGQI 404
+DE ++GLD++ +++V +L +G T++ S+ QP+ Y +FD ++++S+G+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ--KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 405 VYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKE-FA 463
++ G + +FE +GF ADFL ++ + Q + +E+P VK+
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP----NVKQSLV 341
Query: 464 DAFQSFSVGQI-LGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSF 522
++ + ++ E+ + +TK++ + S+ ++ +L++R+
Sbjct: 342 ASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLK 401
Query: 523 VYFFKLFQLTTIALVTMTLFFRTKM--HRD--SVTDGVIYAGATFFIIIMIMFNGMAEIS 578
+ F + V M H D V D + G FFI I F G+
Sbjct: 402 ERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRL---GLLFFISI---FWGVFPSF 455
Query: 579 MTIAKLP----IFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNA 634
++ P IF K+R Y +Y + +P+ + +++ TY++ G P
Sbjct: 456 NSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPEL 515
Query: 635 GRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKS 694
G F L+LL ++ L + A + A+T +L GGF +++ + S
Sbjct: 516 GAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK--LPS 573
Query: 695 WWIWAYWCSPLMYA 708
W + S Y+
Sbjct: 574 CMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 9e-39
Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 51/298 (17%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYN 216
N+ T L GVS + PG + LLGP +GKTTLL LAG L + G +
Sbjct: 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVL 65
Query: 217 GHNMDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
G+++ + + R Y+ Q E+TVRE L F AR G+ E+
Sbjct: 66 GYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE-------AEERI- 117
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
+ +L++ GL+ ++ +R +SGG ++R++
Sbjct: 118 --------------------------EELLELFGLE-----DKANKKVRTLSGGMKQRLS 146
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLIS--LLQPAPEAYDL 392
L+ + +DE ++GLD + +I LR+ T L+S +L+ EA +L
Sbjct: 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEEL 203
Query: 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKC--PERKGVADFLQEVTSRKDQEQYWA 448
D +I+++DG+I+ +G E + E F G PER +A+ L+ + K +E+
Sbjct: 204 CDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 155 SLNILSSRKKH----ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY 210
S +S I ILK SG+++PG M L+LG P SG +TLL ALA + + ++ +
Sbjct: 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE 64
Query: 211 GRVTYNGHNMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 256
G + YNG EF Y+S+ DVH +TVRETL F+ RC+G
Sbjct: 65 GDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 6e-32
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQ--ETF 898
+L SG +PG + ++G G+G +TL+ LA R + V G+I +G P K+ E +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
Y + D+H P +TV E+L ++ +
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------------ 111
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1017
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 112 -GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
T +++Q S +I++ FD++ +L G++IY G
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP--KKQ 895
+ L+ VS PG+ L+G GAGKTTLM +LA +G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQP 67
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
+ R GY Q P TV E L Y AWL+ + SK K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
R V+ + H D+ +++ +L +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-29
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHN 219
S K +LK VSG +PG +T ++GP +GK+TLL ALAG+ + L + G V NG
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 220 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 257
+D+ ++ Y+ Q D+ +TVRETL F+A+ +G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFA- 899
++ +S G + L+G GAGKTT + +L G R T+G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 900 -RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
+ GYC Q D ++TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1019 VVCTIH 1024
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 34/235 (14%)
Query: 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR 876
++++S D L+ +S + G ++G G+GK+TL+ +L G
Sbjct: 2 LKNLSFSYP-----------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
Query: 877 KTTGYVTGNITISGYPKKQET---FARISGYCEQNDIHSPQV-----TVYESLLYSAWLR 928
G +G + + G + + R G QN P TV E + +
Sbjct: 51 L--GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENL 104
Query: 929 LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 988
PE + + R +EE +ELV L LR LS Q++R+ IA L +P I+
Sbjct: 105 GLPEEEIEER---VEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDIL 156
Query: 989 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+DEPT+GLD ++ ++ G+T++ H + E D + +L+ G
Sbjct: 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-25
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 722 WRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN 776
W K + E LG VL+SRG FT++YWYW+GVGALLGF ILFNI F LAL++LN
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLN 55
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 32/233 (13%)
Query: 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG- 875
+D+T S VL + VS +PG A++G GAGK+TL+ + G
Sbjct: 2 VEDLTVS------------YGGHPVLED-VSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48
Query: 876 -RKTTGYVTGNITISGYPKKQETFARISGYCEQN---DIHSPQVTVYESLLYSAWLRLSP 931
+ T+G +I + G P ++E RI GY Q D P ++V + +L +
Sbjct: 49 LKPTSG----SIRVFGKPLEKER-KRI-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGL 101
Query: 932 -EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990
SK K ++E +E V L+ L +G LS Q++R+ +A LV +P ++ +
Sbjct: 102 FRRLSKADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLL 156
Query: 991 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
DEP +G+D + + +R G T++ H + + E FD + LL R
Sbjct: 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-22
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 29/216 (13%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQET 897
+L+ +S + G +T ++G G+GK+TL+ LAG + +G V I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 898 FARISGYCEQNDIHSPQVTVYESLLY------SAWLRLSPEVDSKTRKMFIEEVMELVEL 951
A+ Y Q+ +TVYE +L + R S E + +EE +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
L V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1012 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
+ G TVV +H D+ A D L LLK G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 6e-22
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFA 899
+L +S + G +TAL+G GAGK+TL+ + G + ++G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE----IKIFGKPVRKRRKR 74
Query: 900 RISGYCEQNDIHSPQ--VTVYESLLYSAWLRLS--PEVDSKTRKMFIEEVMELVELNLLR 955
GY Q +TV + +L + + ++ K ++ ++E +E V + LR
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDLR 133
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
+G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 134 DRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
G+TV+ H + + FD + L R
Sbjct: 189 GKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 5e-21
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYP--KKQETF 898
L+ +S G + L+G GAGKTTL+ ++ G + +G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRG 1043
++ + H + D + +L G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 7e-21
Identities = 36/87 (41%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLIS 381
+RG+SGG+RKRV+ LV F+DE ++GLDSS+ Q+++ LR+ R T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 382 LLQPAPEAYDLFDDIILISDGQIVYQG 408
+ QP+ E ++LFD ++L+S G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 61/251 (24%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+ +S + G + LLG +GKTT L L G+L + G NG+++
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTD 69
Query: 227 RTAA-----YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS--------------------- 108
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
E + +L++LGL A+ +SGG +++++ L+G
Sbjct: 109 -------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI----SLLQPAPEAYDLFDDII 397
+DE ++GLD ++ I + + + +G ++I S+ EA L D I
Sbjct: 151 GPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEALCDRIA 203
Query: 398 LISDGQIVYQG 408
++SDG++ G
Sbjct: 204 IMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 1e-20
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 49/208 (23%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQET 897
+L+ +S + G + ++G GAGK+TL+ LAG + ++G + ++ K+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE-- 70
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
AR Y Q +EL+ L L
Sbjct: 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR 93
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1016
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R G
Sbjct: 94 -----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKRGG 1044
+TVV +H ++ D + LLK G
Sbjct: 149 KTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 25/210 (11%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
+L+ +S G + AL G GAGKTTL +LAG +G+I ++G P K + +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILLNGKPIKAKERRKS 72
Query: 902 SGYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
GY Q+ D +V E LL E+D+ + E V++ ++L L++
Sbjct: 73 IGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH-- 123
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+ V+
Sbjct: 124 -P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVI 180
Query: 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
H D FL K + + +
Sbjct: 181 VITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPK 893
+++ L VS + G A++G +G+GK+TL+++L G R T+G V IS +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 894 KQETFAR---ISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
K+ R I G+ Q+ + P +T E++ L L+ V K R+ EE++E
Sbjct: 74 KELAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRERAEELLER 127
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
V L + LS Q++R+ IA L +P II DEPT LD+ VM
Sbjct: 128 VGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182
Query: 1009 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+R + G T+V H P ++ E D + L+ G
Sbjct: 183 LRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 54/243 (22%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ- 226
L +S I+ G L++GP SGK+TLL L G L G V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 227 --RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
R + Q+ D TV E +AF G+ E+ R + A
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEI----EERVEEA--------- 118
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
L+++GL+ D +SGGQ++RV +L
Sbjct: 119 --------------------LELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL---LQPAPEAYDLFDDIILIS 400
+DE + GLD + +++ L++ G T+I + L +L D +I++
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLD---LLLELADRVIVLE 208
Query: 401 DGQ 403
DG+
Sbjct: 209 DGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
R L VS G L+G G+GK+TL+ +L G + T+G + + G
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG----EVLVDGLDTSS 70
Query: 896 ET----FARISGYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
E + G QN D TV + + + L + + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1011 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
+ G+T++ H + E D + +L G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQET 897
L+ +S PG AL+G +G GKTTL+ ++AG R +G + ++G P ++
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-- 71
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R G Q+ P +TV E++ + LR P+ + + R + E++ELV L L
Sbjct: 72 --RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNR 126
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTG 1016
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 127 YP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 1017 RTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
T + H D EA D + ++ G
Sbjct: 182 ITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 6e-19
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 53/208 (25%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
LN VS G + AL+G +G+GK+TL+ +AG +G + ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1018
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1019 VVCTIHQPSIDIFEAF---DELFLLKRG 1043
VV H D+ EA D + +L+ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
+L +SG ++PG +T L+G +GKTTLL LAG+ + + G + NG +D+
Sbjct: 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-TGEILINGRPLDK 75
Query: 223 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 258
QR+ Y+ Q DVH +TVRE L FSA +G+
Sbjct: 76 NF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 69/253 (27%), Positives = 108/253 (42%), Gaps = 46/253 (18%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
IL +S I G +T +LGP SGK+TLL LAG K S G V +G ++
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS-----GEVLLDGKDIASLS 70
Query: 225 PQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
P+ + AY+ Q +TV E + G P
Sbjct: 71 PKELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP--- 103
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
+ +E + + L++LGL+ AD V + +SGG+R+RV L
Sbjct: 104 ---HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQ 155
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401
+DE ++ LD + +++ LR ++ +G T++ +L A D +IL+ D
Sbjct: 156 ETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKD 214
Query: 402 GQIVYQGPREHVL 414
G+IV QG E VL
Sbjct: 215 GKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-18
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+ H P
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 1027 SIDIFEAFDELFLLKRG 1043
A D + +LK G
Sbjct: 141 E-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-18
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
+L ++ A G + AL+G GAGK+TL+ L G R +G V + Y +K
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 896 ETFARIS-GYCEQN---DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
R G Q+ + + V + + + L L R+ + E + V
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGA 117
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
+ LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 118 SGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1012 TVDTGRTVVCTIH 1024
G TVV + H
Sbjct: 173 LRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE---TFA 899
L+ VS RPG AL+G GAGK+TL +L G I+++G+ ++ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R+ +Q + ++V ++L Y A L +++ R I E++ + L V
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADDKV 130
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1018
L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G +
Sbjct: 131 R-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLS 185
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRG 1043
V+ H +D EA D L +L RG
Sbjct: 186 VLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 5e-18
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNIT-ISGYPKKQETFA 899
L V+ G + A++G +GAGK+TL+ L G T+G + N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 900 RIS-GYCEQNDIHSPQVTVYESLL------YSAWLRLSPEVDSKTRKMFIEEVMELVELN 952
R G Q P+++V E++L S W L + + ++ L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1010
+L +A + LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 1011 NTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 8e-18
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY------PKKQE 896
L VS + PG AL+G +GAGK+TL+ L G +G++ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 897 TFARISGYCEQNDIHSPQVTVYESLL---------YSAWLRLSPEVDSKTRKMFIEEVME 947
R G Q +++V E++L + + L P+ + + +
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALA 127
Query: 948 LVE-LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+E + LL +A + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 128 ALERVGLLDKAYQR---ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184
Query: 1007 RTVRN-TVDTGRTVVCTIHQPSI 1028
++ + G TV+ ++HQ +
Sbjct: 185 DLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 8e-18
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYP--KKQETFA 899
++ V+ R G + +G GAGKTT + +L + T G ++GY ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVR 65
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLS--------PEVDSKTRKMFIEEVMELVEL 951
R G Q +V E L + L P+ +++ R EE++EL EL
Sbjct: 66 RSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEER---AEELLELFEL 114
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 115 GEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
Query: 1012 TVDTGRTVVCTIH 1024
+ G T++ T H
Sbjct: 170 LKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 12/188 (6%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETF 898
+ ++ VS +PG +T L+G GAGKTT + +LAG G T+ G+ +E
Sbjct: 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPA 74
Query: 899 A--RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
R G+ + ++T E+L Y A L + R +EE+ + + + L
Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEELLD 131
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G
Sbjct: 132 RRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186
Query: 1017 RTVVCTIH 1024
+ ++ + H
Sbjct: 187 KCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-17
Identities = 74/311 (23%), Positives = 128/311 (41%), Gaps = 57/311 (18%)
Query: 754 VGALLGFIILFNIGFALALSFLN-WSADDIRRRDSSSQSLETITEA---NQPKRRGMVLP 809
+G L+ F +L + W D ++ + + L I + + + + LP
Sbjct: 409 LGQLVAFNMLAGYFISPITRLSQLW--TDFQQAKVALERLGDILDTPPEQEGDKTLIHLP 466
Query: 810 FEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTL 869
+ F++V++ DD VL + +S PG A++G +G+GK+TL
Sbjct: 467 KLQGEIEFENVSFRYGP----------DDPPVLED-LSLEIPPGEKVAIVGRSGSGKSTL 515
Query: 870 MDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAW 926
+ +L G G I + G + R GY Q+ L+S
Sbjct: 516 LKLLLGLYKP--QQGRILLDGVDLNDIDLASLRRQVGYVLQDP-----------FLFSGS 562
Query: 927 LR-----LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP---------GVNGLSTEQR 972
+R +PE EE++E +L + + LP G LS QR
Sbjct: 563 IRENIALGNPEATD-------EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615
Query: 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1032
+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H+ S
Sbjct: 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLS--TIR 672
Query: 1033 AFDELFLLKRG 1043
+ D + +L +G
Sbjct: 673 SADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ--ET 897
L V+ G A++G +G+GK+TL+++L G + T+G V ++ +K+ +
Sbjct: 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80
Query: 898 FARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
+ G+ QN + P +TV E++ + K + EV+ L + L +
Sbjct: 81 RRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1014
+ + LS Q++R+ IA L+ NP II DEPT LD++ A V+ +R +
Sbjct: 139 K-------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 1015 TGRTVVCTIHQPSI 1028
G+T++ H P +
Sbjct: 192 RGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-17
Identities = 79/305 (25%), Positives = 122/305 (40%), Gaps = 60/305 (19%)
Query: 751 WLGVGALLG-------FIILFNIGFAL--ALSFLNWSADDIRRRDSSSQSLETITEANQP 801
W G A+ +L + A A + L +A + R ++++ + + +A P
Sbjct: 257 WAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGP 316
Query: 802 K------RRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVL 855
G V +P +L D++ VLD VS PG
Sbjct: 317 VAEGSAPAAGAVGLGKP-TLELRDLSAGYPGAPP-----VLDG-------VSLDLPPGER 363
Query: 856 TALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQETFARISGYCEQNDIHS 912
A++G +G+GK+TL+ LAG + G +T+ G P Q+ R C Q D H
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAHL 420
Query: 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE-- 970
TV E+L + P+ EE+ +E L L LP GL T
Sbjct: 421 FDTTVRENLRLAR-----PDATD-------EELWAALERVGLADWLRALPD--GLDTVLG 466
Query: 971 ---------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1021
+R+RL +A L+A+ I+ +DEPT LDA A ++ + +GRTVV
Sbjct: 467 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVL 525
Query: 1022 TIHQP 1026
H
Sbjct: 526 ITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-17
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 67/261 (25%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEFV 224
L VS IRPG ++G SGK+TLL L G LY G V +G ++ +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-------LYQPTEGSVLLDGVDIRQID 533
Query: 225 P---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
P +R Y+ Q D + T+R+ +A A P D
Sbjct: 534 PADLRRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYAD 567
Query: 282 LDVFMKAAATEGQEASVVTDYI-LKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+ ++AA G VT+++ GL D +G E R +SGGQR+ V L+
Sbjct: 568 DEEILRAAELAG-----VTEFVRRHPDGL----DMQIG-ERGRSLSGGQRQAVALARALL 617
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAPEAYDLFD 394
+DE ++ +D+ + + + L+++ L G TL+ SLL DL D
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRW---LAGKTLVLVTHRTSLL-------DLVD 667
Query: 395 DIILISDGQIVYQGPREHVLE 415
II++ +G+IV GP++ VLE
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 2e-17
Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 67/233 (28%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ F +V++S +L VS +PG A++G +G+GK+TL+ +L
Sbjct: 1 IEFKNVSFSYP-----------GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 875 G-RKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
T +G I I G + E+ + Y Q + L+S
Sbjct: 50 RLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFS------ 89
Query: 931 PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990
+ I E N LS QR+R+ IA L+ +P I+ +
Sbjct: 90 ---GT------IRE--------------------NILSGGQRQRIAIARALLRDPPILIL 120
Query: 991 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
DE TS LD A+++ +R + G+TV+ H+ S D + +L G
Sbjct: 121 DEATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 56/271 (20%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
+LK V+ I G +LLGP GK+TLL +AG + S G + +G ++ +
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS-----GEILIDGRDVTDLP 71
Query: 225 PQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
P+ R A + Q+ MTV E +AF + +GV E+ +R K
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKA-----EIDKRVKEV--------- 117
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
K+LGL+ + +SGGQR+RV LV
Sbjct: 118 --------------------AKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKP 152
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ F +DE + LD+ + + +++ +H GTT I + EA L D I++++DG+
Sbjct: 153 KVFLLDEPLSNLDAKLRVLMRSEIKK-LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGR 211
Query: 404 IVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
I G + ++ P VA F+
Sbjct: 212 IQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP------KKQE 896
L +++ PG A++G +GAGK+TL+ + +G+I + G KK
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLR 75
Query: 897 TFARISGYCEQNDIHSPQVTVYESLL---------YSAWLRLSPEVDSKTRKMFIEEVME 947
R G Q+ ++TV E++L + + L E D K R + E +
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-KERALSALERVG 134
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
L + R + LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 135 LADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 1008 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 187 YLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP-KKQETFAR- 900
+ VS G +T L+G GAGKTTL+ ++A +G +TI G + +F R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRR 75
Query: 901 -ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
I + +++ ++T E+L Y A L + K R I E+ + ++L V
Sbjct: 76 KIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRV 131
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1019
G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V
Sbjct: 132 G-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRG 1043
+ + H ++ D + +L +G
Sbjct: 187 IFSSHIMQ-EVEALCDRVIVLHKG 209
|
Length = 245 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 75/254 (29%), Positives = 108/254 (42%), Gaps = 67/254 (26%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEFV 224
L VS IR G ++G SGK+TLL LAG LY G V +G ++ +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-------LYKPTSGSVLLDGTDIRQLD 72
Query: 225 PQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
P R Y+ Q DV + T+R+ + A P D
Sbjct: 73 PADLRRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLAD 106
Query: 282 LDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+ ++AA E + VTD++ K GLD +G E RG+SGGQR+ V L+
Sbjct: 107 DERILRAA-----ELAGVTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALL 156
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAPEAYDLFD 394
+DE ++ +D ++ ++ LRQ L TLI SLL DL D
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQL---LGDKTLIIITHRPSLL-------DLVD 206
Query: 395 DIILISDGQIVYQG 408
II++ G+IV G
Sbjct: 207 RIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-17
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYP--KKQETFA 899
+ VS R G + L+G GAGKTT + +L K T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R G Q+ ++T +E+L A L V R+ I+E+++ V L LV
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV 129
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1018
S R+RL IA LV P ++F+DEPT GLD + A V + + G T
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 1019 VVCTIH 1024
++ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 40/203 (19%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ- 895
LV L+ VS + RPG + L+G GAGKTTL ++++G R T+G V I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 896 ------ETFARISGYCEQNDIHSPQV----TVYESLL--------YSAWLRLSPEVDSKT 937
TF Q P++ TV E+++ L + + +
Sbjct: 73 ARLGIGRTF--------QI----PRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120
Query: 938 RKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
R+ EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL
Sbjct: 121 RER-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 998 DARAAAIVMRTVRNTVDTGRTVV 1020
+ + +R + G TV+
Sbjct: 175 NPEETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK--- 893
D L+ ++ + G LTAL+G +GAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-LAPT-QGEIRVNGIDLRDL 388
Query: 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL 953
E + + + QN + T+ E++ L+ S I ++ L
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENI------LLARPDASDEE---IIAALDQAGLLE 438
Query: 954 LRQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I+++
Sbjct: 439 FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
++ +TV+ H+ D +A D + +L G
Sbjct: 499 LQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK--TTGYVTGN-ITISGYPKKQETFA 899
L+ ++ + G L+G +GAGK+TL+ ++ + T+G + N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R G Q+ P VYE++ ++ EV + + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFAL------EVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1019 VVCTIHQPSI 1028
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L+ +S + G + +G GAGKTT M ++ G + +G +T Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
I E + P +T E+L A L + I+EV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1021 CTIHQ 1025
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-16
Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 24/296 (8%)
Query: 751 WLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEANQPKRRGMVLPF 810
L VGAL FI+ L + R ++ + E + E + + L
Sbjct: 265 SLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKD 324
Query: 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM 870
S+ F++V++S + +L +S + PG A++G +G+GK+TL+
Sbjct: 325 TIGSIEFENVSFS------------YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372
Query: 871 DVLAGRKTTGYVTGNITISGYPKKQETFA---RISGYCEQNDIHSPQVTVYESLLYSAWL 927
+L +G I I G + + + G Q D T+ E++
Sbjct: 373 KLLLRLYDPT--SGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENIALGRPD 429
Query: 928 RLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 987
E++ + E + + +VG GVN LS QR+RL IA L+ NP I
Sbjct: 430 ATDEEIEEALKLANAHEFIANLPDGY--DTIVGERGVN-LSGGQRQRLAIARALLRNPPI 486
Query: 988 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ +DE TS LD A++ ++ + GRT + H+ S + D + +L G
Sbjct: 487 LILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 41/229 (17%)
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872
+ F +V++S + + L++VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 873 LAG-RKTTGYVTGNITISGYPKKQETFARIS---GYCEQNDIHSPQVTVYESLLYSAWLR 928
LAG K T G++ + G +Q A + GY Q D+ T+ +++ A
Sbjct: 50 LAGLYKPTS---GSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA--- 102
Query: 929 LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP---------GVNGLSTEQRKRLTIAV 979
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 --PLADD-------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153
Query: 980 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-16
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 54/264 (20%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
L V+ + G + LLGP SGK+TLL +AG + DS GR+ NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS-----GRIRLNGQDATRVH 68
Query: 225 PQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
+ R ++ QH +TVR+ +AF E+ + KA
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK--------- 106
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+KA E +L+++ L +GD +SGGQR+RV L
Sbjct: 107 --IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEP 149
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
Q +DE LD+ ++ + LR+ + TT+ + EA ++ D I+++S+G+
Sbjct: 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGK 208
Query: 404 IVYQGPREHVLE------FFEFMG 421
I G + V + F+G
Sbjct: 209 IEQIGSPDEVYDHPANPFVMSFLG 232
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 7e-16
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 832 LRGV---LDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTG--YVTG 884
LRG+ R VL V R G + A++G +G+GK+TL+ ++ G R +G + G
Sbjct: 3 LRGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 885 NITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE 944
+ R G Q+ +TV+E++ + LR + ++ EE
Sbjct: 62 EDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLR-------EHTRLSEEE 112
Query: 945 VMELVELNLLRQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
+ E+V L VGL G LS +KR+ +A L +P ++ DEPT+GLD
Sbjct: 113 IREIVLEKL---EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169
Query: 1000 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
A+ ++ +R+ G T + H F D + +L G
Sbjct: 170 IASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 56/258 (21%), Positives = 98/258 (37%), Gaps = 57/258 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
+L+ +S + G +T L+GP +GK+TLL A+ G K S G + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-----GEIKIFGKPVRKRR 72
Query: 225 PQRTAAYISQHDVHIGE--MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
+ Y+ Q +TV++ + G + L +++K
Sbjct: 73 KRLRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEKV------- 120
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGP 342
D L+ +G+ + D I +SGGQ++RV L
Sbjct: 121 ------------------DEALERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQN 157
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTTLISL---LQPAPEAYDLFDDII 397
+DE TG+D + +I + LR G T++ + L FD +I
Sbjct: 158 PDLLLLDEPFTGVDVAGQKEIY----DLLKELRQEGKTVLMVTHDLGLVM---AYFDRVI 210
Query: 398 LISDGQIVYQGPREHVLE 415
+ + ++ GP E VL
Sbjct: 211 CL-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 1e-15
Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 59/253 (23%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
+ + LKGVS I G ++GP SGK+T LL + G LD G V +G ++ +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGLDRPTS--GEVRVDGTDISK 70
Query: 223 FVPQRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYEMLTELARREK 272
+ AA+ + HIG ++T E + GV + RRE+
Sbjct: 71 LSEKELAAFRRR---HIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ERRER 120
Query: 273 AAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKR 332
A +L+ +GL + E+ SGGQ++R
Sbjct: 121 AE---------------------------ELLERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 333 VTTGEMLVGPAQAFFMDEISTG-LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391
V L + DE TG LDS T +++ LR+ GTT++ ++ PE +
Sbjct: 149 VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNK-EAGTTIV-VVTHDPELAE 205
Query: 392 LFDDIILISDGQI 404
D II + DG+I
Sbjct: 206 YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 48/263 (18%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
LK VS I G LL+GP SGK+TLL L G L G V +G +
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSS 70
Query: 223 FVP----QRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
++ + Q+ D + TV + +AF G+ RE+
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE----- 114
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
++ E L+++GL+ D +SGGQ++RV
Sbjct: 115 --------IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAG 151
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
+L + +DE + GLD +++ L++ G T+I + + D ++
Sbjct: 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVV 210
Query: 398 LISDGQIVYQGPREHVLEFFEFM 420
++ DG+I+ G + E +
Sbjct: 211 VLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 18/189 (9%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP-KKQETFA 899
++N +S G L+G GAGK+T+ ++ G + G IT+ G P + A
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLA 112
Query: 900 RIS-GYCEQNDIHSPQVTVYESLL-YSAWLRLSPEVDSKTRKMFIEEVM-ELVEL-NLLR 955
R G Q D + TV E+LL + + +S TR+ IE V+ L+E L
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFARLES 164
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
+A V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 165 KADAR---VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221
Query: 1016 GRTVVCTIH 1024
G+T++ T H
Sbjct: 222 GKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 15/197 (7%)
Query: 831 KLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG 890
+ D+LV+ + +S + G L+G GAGKTT + +L G T G+I++ G
Sbjct: 12 NVEKRYGDKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG--LTHPDAGSISLCG 68
Query: 891 YPKKQET-FARIS-GYCEQNDIHSPQVTVYESLL-YSAWLRLSPEVDSKTRKMFIEEVME 947
P AR G Q D P TV E+LL + + LS + + + ++E
Sbjct: 69 EPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLE 124
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
+L A VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++
Sbjct: 125 FAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE 179
Query: 1008 TVRNTVDTGRTVVCTIH 1024
+R+ + G+T++ T H
Sbjct: 180 RLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 53/273 (19%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMD--EFVPQ 226
L +S I+ G + LLGP +GK+TLL +AG L++ GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETPDA--GRIRLNGRVLFDVSNLAV 74
Query: 227 RTAA--YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
R ++ QH MTV + +AF + + E +E R + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-------- 121
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
L + + D +SGGQR+RV L +
Sbjct: 122 ------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404
+DE LD+ ++ LR+ L TT+ EA +L D +++++ G+I
Sbjct: 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRI 216
Query: 405 VYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437
GP + V + P + VA FL EV
Sbjct: 217 EQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L+ +S + G + L+G GAGKTT + ++ G +G + G P RI
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG--IILPDSGEVLFDGKPLDIAARNRI- 72
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962
GY + P++ V + L+Y A L+ + +++ R I+E +E +EL+
Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEYANK----- 124
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+TV+ +
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184
Query: 1023 IHQPSIDIFEAF-DELFLLKRGGQEIY 1048
HQ +++ E D + LL +G +Y
Sbjct: 185 THQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 48/253 (18%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYN 216
LS + L +S + PG LLGP GKTTLL +AG + DS G + +
Sbjct: 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS-----GEILID 60
Query: 217 GHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
G ++ P +R + Q +TV E +AF + +GV E+ R +
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVRE-- 113
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
+L+++GL+ + + +SGGQ++RV
Sbjct: 114 ---------------------------LLELVGLE-----GLLNRYPHELSGGQQQRVAL 141
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395
L +DE + LD+ ++ L++ L G T I + EA L D
Sbjct: 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADR 200
Query: 396 IILISDGQIVYQG 408
I ++++G+IV G
Sbjct: 201 IAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-15
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 21/196 (10%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKK 894
++++ V PG LT L+G G+GK+TL+ +LAG R G V + + G ++
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLY------SAWLRLSPEVDSKTRKMFIEEVMEL 948
AR EQ+ + +TV + + S W SP + + EL
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TEL 127
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
L ++ LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 128 SHL--------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1009 VRNTVDTGRTVVCTIH 1024
VR TG TVV +H
Sbjct: 180 VRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 832 LRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891
L V R++ +S G L G G+GKTTL+ ++AG G I + G
Sbjct: 8 LACVRGGRVLFSG-LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGG 64
Query: 892 PKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
A Y + P +TV E+L + A E+D I +E V L
Sbjct: 65 DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGL 117
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R
Sbjct: 118 ----APLAHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172
Query: 1012 TVDTGRTVVCTIHQPSIDIFEA 1033
+ G V+ H P + + A
Sbjct: 173 HLAQGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 8e-15
Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 50/250 (20%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH--NM 220
KK + + GVS ++PG +T LLGP +GKTT L LAG L+ G T +G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 221 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+ +R ++S +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL----------------------- 108
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+G E + + + LG++ D VG G S G R++V LV
Sbjct: 109 -----------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALV 152
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTTLISLLQPAPEAYDLFDDIIL 398
+DE +TGLD T +LR+FI LR G ++ E L D +++
Sbjct: 153 HDPPVLLLDEPTTGLDVMAT----RALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV 208
Query: 399 ISDGQIVYQG 408
+ G++VY+G
Sbjct: 209 LHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 9e-15
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG----YVTGNITISGYPKKQE 896
V+L+ ++ G + A++G +G+GK+TL++++ + Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 897 TFARIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKM-FIEEVMELVELNL- 953
F R GY QN TV E+L L L + SK K +E +E V LNL
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLD----LGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 128 LKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 1014 DTGRTVVCTIHQPSI 1028
D G+T++ H P +
Sbjct: 182 DEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-14
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK---K 894
R L VS PG AL+G +GAGK+TL+++L G G+I ++G P
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADAD 390
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
+++ + Q+ T+ E++ + P+ I E +E L+
Sbjct: 391 ADSWRDQIAWVPQHP-FLFAGTIAENIRLAR-----PDASDAE----IREALERAGLDEF 440
Query: 955 RQAL-VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
AL GL G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 1009 VRNTVDTGRTVVCTIHQPSI 1028
+R + GRTV+ H+ ++
Sbjct: 501 LRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 66/264 (25%), Positives = 97/264 (36%), Gaps = 65/264 (24%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
++ VS G +T LLG +GKTTLL +A L G+VT +G + R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 229 AAYISQH-DVHIGE------MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+++ + V GE +T RE L + AR L L+R+E A I
Sbjct: 70 PSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI----- 114
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
+ K L L D VG S G +++V LV
Sbjct: 115 -------------------AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVH 150
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP--APEAYDLFDDIILI 399
+DE ++GLD T FI L+ + E L D +I++
Sbjct: 151 DPSILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206
Query: 400 SDGQIVYQGPRE-----HVLEFFE 418
G++V +G E VL E
Sbjct: 207 HKGEVVLEGSIEALDARTVLRNLE 230
|
Length = 245 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 17/224 (7%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
L+ +S + G L AL+G +GAGK+TL+ ++AG G + N +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
R G+ Q+ P +TV +++ + +R + +EE++ LV+L L
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLA 131
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1014
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 DR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1015 TGRTVVCTIHQPSIDIFEAFDELFLLKRGG-------QEIYVGP 1051
G T V H + E D + +L +G E+Y P
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ- 895
L +N VS RPG + L+G GAGKTTL +++ G + ++G V I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 896 ------ETFARISGYCEQNDIHSPQVTVYESLL--YSAWLRLSPEVDSKTRKMFIEEVME 947
TF Q P +TV E++ A L LS + + E E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 948 LVELNLLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
L VGL LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEF---VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185
Query: 1003 AIVMRTVRNTVDT-GRTVV 1020
+ +R D G T++
Sbjct: 186 EELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+L GVS +RPG + +LGP +GK+TLL AL+G+L G VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 227 RTA---AYISQHDVHIG-EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
A A + Q + + TV+E + G E +A + AA DL
Sbjct: 72 ELARHRAVLPQ-NSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAA-----TDL 125
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML--- 339
G++ R +SGG+++RV +L
Sbjct: 126 SGL------AGRD--------------------------YRTLSGGEQQRVQLARVLAQL 153
Query: 340 ---VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396
V + F+DE ++ LD + + RQ G ++++L A D I
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRI 211
Query: 397 ILISDGQIVYQGPREHVL 414
+L+ G+++ G + VL
Sbjct: 212 VLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L+ VS RPG + AL+G GAGK+TLM +L+G +G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 901 ISGYCEQND-----IH-----SPQVTVYESL-LYSAWLRLSPEVDSKTRKMFIE--EVME 947
S + +H P ++V E++ L R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
+ L++ LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1008 TVRNTVDTGRTVV 1020
+R G ++
Sbjct: 187 LIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 45/256 (17%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
L +V+ + L+D +S + G AL+G +G GK+TL+ ++A
Sbjct: 1 LEVRNVSKTYGGGGGAVT--ALED-------ISLSVEEGEFVALVGPSGCGKSTLLRIIA 51
Query: 875 GRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVD 934
G + +G + + G P R GY Q D P +TV +++ L L
Sbjct: 52 GLER--PTSGEVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPK 105
Query: 935 SKTRKMFIEEVMELVELNLLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIF 989
++ R E EL+EL VGL G LS R+R+ +A L +P ++
Sbjct: 106 AEAR----ERAEELLEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154
Query: 990 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048
+DEP S LDA + + + +TG+TV+ H DI EA +FL +
Sbjct: 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH----DIDEA---VFL----ADRVV 203
Query: 1049 VGPLGRHSSHLIKYFE 1064
V L ++ E
Sbjct: 204 V--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-14
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ- 226
+L+ +S I PG ++G SGK+TLL L G GR+ +G ++++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 227 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 285 FMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
++AA + + ++I + +G DT VG E +SGGQR+R+ L+
Sbjct: 579 IIEAA-----QLAGAHEFIENLPMGY----DTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ +DE ++ LD T I+ +L Q IL+G T+I ++ D II++ G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 404 IVYQGPREHVLE 415
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGY------PKKQ 895
L V+ G L+G +G GK+TL+ ++AG + T G I I G P+K+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEKR 75
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
QN P +TVYE++ + LR P+ + R ++EV +L+ L L
Sbjct: 76 GI-----AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLL 127
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 128 NRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-14
Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872
+L + VT S D+ + +++S PG + L+G GAGKTT +
Sbjct: 1 MALEIEGVTKS------------FGDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRM 47
Query: 873 LAGRKTTGYVTGNITISGYPKKQETFARISGYC-EQNDIHSPQVTVYESLLYSAWLRLSP 931
+ G G IT +G P QE RI GY E+ ++ P++TV + L Y A L+ P
Sbjct: 48 ILG--LLEPTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMP 103
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPG--VNGLSTEQRKRLTIAVELVANPSIIF 989
+ + + + ++ +E R +VG + LS ++++ ++ P ++
Sbjct: 104 KAEIQKK---LQAWLE-------RLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI 153
Query: 990 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049
+DEP SGLD ++ + + G T++ + H+ + E D L +LK+ GQ +
Sbjct: 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLY 211
Query: 1050 GPL 1052
G +
Sbjct: 212 GTV 214
|
Length = 300 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 42/239 (17%)
Query: 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR 876
F++V +S D + + VL D ++ + +PG A++G TGAGKTTL+++L
Sbjct: 5 FENVNFSYD-----EKKPVLKD-------INFSIKPGETVAIVGPTGAGKTTLINLL--- 49
Query: 877 KTTGYVT---GNITISGYPKKQETFARIS---GYCEQNDIHSPQVTVYESLLYSAWLRLS 930
+ G I I G + + + G Q D T+ E++ R +
Sbjct: 50 --MRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG---RPN 103
Query: 931 PEVDSKTRKMFIEEVMELVELN-LLRQALVGL-----PGVNGLSTEQRKRLTIAVELVAN 984
+ + E + + + + G LS +R+ L IA ++ +
Sbjct: 104 ATDEE------VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157
Query: 985 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
P I+ +DE TS +D ++ + + GRT + H+ S I A D++ +L G
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK-KQETFA 899
V++N +S G L+G GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 900 RIS-GYCEQNDIHSPQVTVYESLL-YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R++ G Q D P+ TV E+LL + + +S ++ + I ++E L
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADV 131
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1018 TVVCTIH 1024
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 24/176 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVT-GNITISGYPKK 894
L +S G +TAL+G +G GK+TL+ D++ G G V I
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 895 QETFARISGYCEQNDIHSPQV---TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
R G Q P ++Y+++ Y L + +EE + L
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAAL 129
Query: 952 --NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
+ + GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 130 WDEVKDRL-----HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 37/264 (14%)
Query: 826 MPQEM--KLRGV---LDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKT 878
E ++RGV DR++L + V G + A++G +G+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 879 TGYV---TGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDS 935
G + +I + E R+ G Q +TV+E++ + LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 936 KTRKMFIEEVMELVELNLLRQALVGLPGVNG------LSTEQRKRLTIAVELVANPSIIF 989
+ K+ + ELV + L LVGL G LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMKL---ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 990 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048
+DEPTSGLD +A ++ +R D G TV+ H + D + +L G+ I
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIA 226
Query: 1049 VGPLG--RHSSH-LIK-YFEGNPG 1068
G S ++ +F G
Sbjct: 227 EGTPEELLASDDPWVRQFFNGIRD 250
|
Length = 263 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 66/259 (25%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGH 218
+ + LK V+ I G ++GP SGK+T LL L G LD +S G V NG
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPTS----GEVLINGK 67
Query: 219 NMDEFVPQRTAA-------YISQ-HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
++ + + A ++ Q ++ + ++TV E + G + RR
Sbjct: 68 DLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAG--------RR 118
Query: 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQR 330
++AA + +L++LGL+ + +SGGQ+
Sbjct: 119 KRAA--------------------------EELLEVLGLEDRLL----KKKPSELSGGQQ 148
Query: 331 KRVTTGEMLVGPAQAFFMDEISTG-LDSSTTFQIVNSLRQFIHILRGTTLI----SLLQP 385
+RV L+ + DE TG LDS T +++ LR+ ++ RG T+I
Sbjct: 149 QRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD---- 202
Query: 386 APEAYDLFDDIILISDGQI 404
PE D +I + DG+I
Sbjct: 203 -PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-13
Identities = 68/303 (22%), Positives = 125/303 (41%), Gaps = 59/303 (19%)
Query: 112 GISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKG 171
G + + V GS N IE L +L+ K L
Sbjct: 287 GEAAADKLFTLLESPVAT---PGSGEKAEVANE--PPIEISLENLSFRYPDGK--PALSD 339
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRT 228
++ I+ G++T L+G +GK+TLL L G L + G + NG ++ + P ++
Sbjct: 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQ 396
Query: 229 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKA 288
+++SQ+ ++ T+RE + + + E + + P PD
Sbjct: 397 ISWVSQNP-YLFAGTIRENILLARP----DASDEEIIAALDQAGLLEFVPKPD------- 444
Query: 289 AATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFM 348
GL DT++G+ G+SGGQ +R+ L+ PA +
Sbjct: 445 -------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPASLLLL 480
Query: 349 DEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL---LQPAPEAYDLFDDIILISDGQIV 405
DE + LD+ T I+ +L++ + T++ + L+ A +A D I+++ +G++V
Sbjct: 481 DEPTAHLDAETEQIILQALQELA---KQKTVLVITHRLEDAADA----DRIVVLDNGRLV 533
Query: 406 YQG 408
QG
Sbjct: 534 EQG 536
|
Length = 559 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQETF 898
LL+ VS RPG + A++G GAGK+TL+ L+G + +G +T++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
AR QN + TV E + + P + EE + L L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQ----MGRIPHRSGREP----EEDERIAAQALAATDL 125
Query: 959 VGLPG--VNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
GL G LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 126 SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 1011 NTVDTGRTVVCTIHQPSIDIFEAF-DELFLLKRG 1043
G V+ +H +++ + D + LL +G
Sbjct: 186 QLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
L + +S G + G GAGKTTL+ +LAG R G V +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
E++ + Y ++T E+L + W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1016 GRTVVCTIHQP 1026
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTG--YVTGNITISGYPKKQETF 898
LN +S + PG L L+G GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 899 ARISGYCEQNDIHS--PQVTVYESLLY------SAWLRLSPEVDSKTRKMFIEEVMELVE 950
AR G + + +TV E+L S + L + ++ R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
LK VS I PG L+GP +GK+TLL L G ++ + G V +G ++++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 227 --RTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
R I Q I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSL---- 113
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+F K E Q A L+ +GL A D++ SGGQ++RV L+
Sbjct: 114 -FGLFPKE---EKQRAL----AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALM 160
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLISLLQPAPEAYDLFDDIILI 399
+ DE LD +++ Q+++ L++ I+ G T ++SL Q A + D I+ +
Sbjct: 161 QQPKLILADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-DLAREYADRIVGL 218
Query: 400 SDGQIVYQGPRE 411
DG+IV+ GP
Sbjct: 219 KDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 69/269 (25%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNG 217
+L+ +S I G L+GP SGK+TL+ + R Y GR+ +G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDG 63
Query: 218 HNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
H++ ++ R +SQ DV + TV E +A+
Sbjct: 64 HDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYG----------------------- 99
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKR 332
+P + +AA A+ ++I++ L DT++G+ RG+ SGGQR+R
Sbjct: 100 --RPGATREEVEEAA-----RAANAHEFIME---LPEGYDTVIGE---RGVKLSGGQRQR 146
Query: 333 VTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPA 386
+ L+ +DE ++ LD+ + + +L +++ TT + S ++ A
Sbjct: 147 IAIARALLKDPPILILDEATSALDTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA 203
Query: 387 PEAYDLFDDIILISDGQIVYQGPREHVLE 415
D I+++ DG+IV +G E +L
Sbjct: 204 -------DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 32/217 (14%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET---F 898
+LN +S + G +TAL+G G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 899 ARISGYCEQNDIH-SPQ-VTVYESLLY------SAWLRLSPEVDSKTRKMFIEEVMELVE 950
AR Q H +P+ +TV E + Y S W RLS E + + ME
Sbjct: 75 ARRLALLPQ--HHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTR 127
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
+N L + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 128 INHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 1011 NTVDTGRTVVCTIHQPSIDIFEA---FDELFLLKRGG 1044
G+TVV +H D+ +A D L +L G
Sbjct: 183 ELNTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKT----------TGYVTGNITISGYPKKQETFARI 901
+T + G +GAGK+TL+ +AG + T I+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
G Q P + V E+L + ++ ++ ++E+++L+ L+ L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNR---- 127
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1021
LS +++R+ +A L A P ++ +DEP S LD ++ ++
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK------- 179
Query: 1022 TIHQPSIDIFEAFDELFLL 1040
++ P I + E L
Sbjct: 180 NLNIPVIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 47/245 (19%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRLYGRVTYNGHNMDEF 223
+L+ VS ++PG ++GP +GK+TLL A+ G K S S+R++G+ +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 224 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
VPQR + D I +VR+ + G+ + L++ +KA
Sbjct: 73 VPQRRSI---DRDFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAKV-------- 113
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
D L+ +GL + + D I +SGGQ++RV LV
Sbjct: 114 -----------------DEALERVGL-----SELADRQIGELSGGQQQRVLLARALVQDP 151
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+DE G+D T I LR+ G T++ + + FD ++L+ +
Sbjct: 152 DLLLLDEPFAGVDPKTQEDIYELLREL--RREGMTILVVTHDLGLVLEYFDRVLLL-NRT 208
Query: 404 IVYQG 408
+V G
Sbjct: 209 VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-13
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
L+ ++ S L + ++ VS R G L+G +G+GK+TL +LA
Sbjct: 281 LSVRNL--SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA 338
Query: 875 GRKT-TGYVTGNITISGYPKKQETFARISG-----YCEQNDIHS--PQVTVYESLLYSAW 926
G + G+I G Q+ S P++TV + L
Sbjct: 339 GLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP-- 393
Query: 927 LRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 986
LR+ R+ + E++ELV L + L P + LS QR+R+ IA L P
Sbjct: 394 LRIHGGGSGAERRARVAELLELVGLP--PEFLDRYP--HELSGGQRQRVAIARALALEPK 449
Query: 987 IIFMDEPTSGLDARAAAIVMR 1007
++ +DEP S LD A V+
Sbjct: 450 LLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 5e-13
Identities = 59/265 (22%), Positives = 96/265 (36%), Gaps = 71/265 (26%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
IL GVS + G + LLG +GKTTLL + G L G + ++G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 226 QRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSR-------YEMLTELA-RREKA 273
A Y+ + E+TV E L A + R YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 334 TTGEMLVGPAQAFFMDEISTGLD---SSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY 390
L+ + +DE S GL F+ + LR G T++ + Q A A
Sbjct: 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-----EGVTILLVEQNARFAL 196
Query: 391 DLFDDIILISDGQIVYQGPREHVLE 415
++ D ++ G++V +G +L
Sbjct: 197 EIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 53/207 (25%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETF 898
+L +VS + PG A++G +G+GK+TL ++ G R T+G V IS + +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--L 74
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
GY Q+D ++F + E
Sbjct: 75 GDHVGYLPQDD-----------------------------ELFSGSIAE----------- 94
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
N LS QR+RL +A L NP I+ +DEP S LD + + + G T
Sbjct: 95 ------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRGGQ 1045
+ H+P + D + +L+ G
Sbjct: 149 RIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT--GNITISGYPKKQETF 898
L+ VS + + G L+G +G+GK+TL + G + T+G + G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 899 ARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
+ Q+ + S P++T+ E + + ++ + LV + L +
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLL---LVGVGLPEE 137
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
L P + LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 138 VLNRYP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 52/253 (20%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRLYGRVTYNGHNMDEFV 224
T+LKGV +R G + ++GP SGK+TLL + G L DS G V +G ++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS-----GEVLIDGEDISGLS 68
Query: 225 PQ------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
R + Q +TV E +AF R S E + E+
Sbjct: 69 EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIREIVL--------- 118
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
K L+ +GL D + +SGG +KRV
Sbjct: 119 -------EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRVALARA 150
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
L + DE + GLD + I + +R + G T I + A+ + D I +
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS-LKKELGLTSIMVTHDLDTAFAIADRIAV 209
Query: 399 ISDGQIVYQGPRE 411
+ DG+IV +G E
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 30/230 (13%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKK 894
V L+ VS G L AL+G +G+GKTTL+ ++AG R +G + G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
+ R G+ Q+ +TV++++ + LR+ P + +V EL++
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK---- 122
Query: 955 RQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
LV L + LS QR+R+ +A L P ++ +DEP LDA+ + R +
Sbjct: 123 ---LVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 179
Query: 1010 RNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRG-------GQEIYVGP 1051
R D T V H + E D + ++ +G E+Y P
Sbjct: 180 RRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-13
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
LN +S PG L ++G GAGKTT+MDV+ G R G V G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 900 RISGYCE--QNDIHSPQVTVYESLLYSA----------WLRLSPEVDSKTRKMFIEEVME 947
R +G Q +TV+E+L + + RLS E + IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG---HNMDEFV 224
+L GVS + PG +LGP SGK+TLL LAG LD L G VT +G ++D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDE 406
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
+R + +Q D H+ + TVRE L + + E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL---- 454
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
A +G DT++G E +SGG+R+R+ L+ A
Sbjct: 455 ---RALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQ 369
+DE + LD+ T +++ L
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 46/235 (19%)
Query: 178 PGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRLYGRVTYNGH-NMDEFVPQRTAAYIS 233
+T + G +GK+TLL +AG K D ++ L G V ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEG 293
Q + VRE LAF + + D
Sbjct: 82 QQYALFPHLNVRENLAFGLK---------------------RKRNREDRISV-------- 112
Query: 294 QEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353
D +L +LGLD + + +SGG+++RV L + +DE +
Sbjct: 113 -------DELLDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 354 GLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
LD + Q++ L+Q L + + EA L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 54/271 (19%), Positives = 95/271 (35%), Gaps = 76/271 (28%)
Query: 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNG 217
+ + L VS I+ G L+G SGK+TL A+ G K S G + ++G
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS-----GSIIFDG 66
Query: 218 HNMDEFVPQ------RTAAYISQHDVHIGE--------MTVRETLAFSARCQGVGSRYEM 263
++ + + + + Q + MT+ E +A R G S+ E
Sbjct: 67 KDLLKLSRRLRKIRRKEIQMVFQ------DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 264 LTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323
+ A G+ + + E
Sbjct: 121 R-KEAVLLLLVGVGLPEE---VLNRYPHE------------------------------- 145
Query: 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI--- 380
+SGGQR+RV L + DE ++ LD S QI++ L++ + G TL+
Sbjct: 146 -LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 381 ---SLLQPAPEAYDLFDDIILISDGQIVYQG 408
+ + D + ++ G+IV +G
Sbjct: 204 HDLGV------VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYP-- 892
D ++L N +S +PG + ++G +G+GK+TL ++ YV G + + G+
Sbjct: 13 DGPVILDN-ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLA 67
Query: 893 -KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME---- 947
R G Q E++L++ +R + M +E V+E
Sbjct: 68 LADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKL 114
Query: 948 ------LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
+ EL +VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 1002 AAIVMRTVRNTVDTGRTVVCTIHQPS 1027
+MR + + GRTV+ H+ S
Sbjct: 174 EHAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-12
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 28/184 (15%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS------GY 904
RPG L+GV GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTG--DTTVTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV----MELVELNLLRQALVG 960
C Q D +T E L A LR P + IE+V ++ + L+L L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANWSIQSLGLSLYADRLAG 2069
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV
Sbjct: 2070 T-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124
Query: 1021 CTIH 1024
T H
Sbjct: 2125 LTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET 897
+ +L ++ + G A++G +G GK+TL+ ++AG +G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG--LEKPTSGEVLLDGRPVTGPG 71
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
GY Q D P +TV +++ L E+ K++ E EL+EL
Sbjct: 72 PDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL------ 117
Query: 958 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 -VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176
Query: 1013 V-DTGRTVVCTIHQPSIDIFEAF---DELFLLKRGGQEI 1047
+T +TV+ H D+ EA D + +L I
Sbjct: 177 WEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 41/253 (16%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP- 225
LK V+ I G M ++GP +GK+TLL +L G +D + G + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 226 -----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+R I Q + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSL---- 116
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+F K + +A L+ +G+ A +SGGQ++RV LV
Sbjct: 117 -FGLFSKE---DKAQAL----DALERVGILDKAYQRAST-----LSGGQQQRVAIARALV 163
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400
+ DE LD + ++++ L+ I+ G T+I L A D II +
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLK 222
Query: 401 DGQIVYQGPREHV 413
G+IV+ GP +
Sbjct: 223 AGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETF 898
L+ V+ G L AL+G +G+GK+TL+ ++AG + +G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 899 A-RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R G+ Q+ +TV +++ + +R P+ K R +EE++ELV+L L
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR 126
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 44/215 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP--- 225
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
+ A++ QH + T+ E + + + S E+ + AG LD F
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA---RPDASD----AEIREALERAG------LDEF 440
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
+ A GL DT +G+ G+SGGQ +R+ + A
Sbjct: 441 VAALP----------------QGL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
+DE + LD+ T +++ +LR +G T++
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRAL---AQGRTVL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 67/251 (26%), Positives = 100/251 (39%), Gaps = 48/251 (19%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-R 227
L VS I G + LLGP SGKTTLL +AG L+ G + + G + + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQER 74
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
++ QH MTV + +AF R V R E E R K
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKV-------------- 117
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
+LK++ LD AD +SGGQR+RV L +
Sbjct: 118 -------------HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI--- 404
+DE LD+ ++ LR+ +H T + + EA ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 405 -----VYQGPR 410
VY P
Sbjct: 219 GTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 29/232 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
++ +S + G L+G +G GKTTL+ ++AG + ++G + I+ P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1018
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 1019 VVCTIHQPSIDIFEAF---DELFLLKRG-------GQEIYVGPLGRHSSHLI 1060
V H D EA D + ++ G +EIY P R + I
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 50/243 (20%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
T L ++ I G +LLGP GKTT L +AG + S GR+ G ++ +
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS-----GRIYIGGRDVTDLP 68
Query: 225 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-EKAAGIKPDPDL 282
P R A + Q+ MTV + +AF + + V E+ R + A
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVREVA-------- 115
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGP 342
++L ++ + D + +SGGQR+RV G +V
Sbjct: 116 ----------------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVRE 148
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
+ F MDE + LD+ Q+ L++ + GTT I + EA + D I +++DG
Sbjct: 149 PKVFLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
Query: 403 QIV 405
QI
Sbjct: 208 QIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 60/258 (23%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L+ R L GVS + PG M LLGP +GKTTL+ LA S G + +G
Sbjct: 6 LTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQ 61
Query: 219 ----NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
+ +R Y+ Q TVRE L + A +G+ S + KA
Sbjct: 62 DVLKQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS---------KEVKAR 110
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
D +L+++ L + I +SGG R+RV
Sbjct: 111 -------------------------VDEVLELVNL-----GDRAKKKIGSLSGGMRRRVG 140
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQF----IHILRGTTLISLLQPAPEAY 390
+ LVG +DE + GLD + N L + I IL T ++ ++
Sbjct: 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVIL-STHIVEDVE------ 193
Query: 391 DLFDDIILISDGQIVYQG 408
L + + +++ G++V++G
Sbjct: 194 SLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 41/242 (16%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ F +VT+ D +L +S G AL+G +G+GK+TL++++
Sbjct: 1 VEFKNVTFRYP-----------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
Query: 875 GRKTTGYVTGNITISGYPKKQETFA---RISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
+ +G I I G+ + T A R G Q D+ TV E++ Y P
Sbjct: 50 --RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----P 101
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLP-------GVNG--LSTEQRKRLTIAVELV 982
EEV E + ++ LP G G LS QR+R+ IA L+
Sbjct: 102 GATR-------EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154
Query: 983 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042
+P I+ +DE TS LD + +V + + RT H+ S I A D + +L+
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLED 211
Query: 1043 GG 1044
G
Sbjct: 212 GK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT---GNITISGYPKKQET 897
L VS G + AL+G GAGKTTL+ + G +G + +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 898 FARIS---GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNL 953
R GY + P++TV E+LL A+ R + ++ +E V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1014 DTGRTVV 1020
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
+L +S G + G G GKTTL+ +LAG R +G V N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
+ R Y P+++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1016 GRTVVCTIHQP 1026
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 53/252 (21%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS----SLRLYGRVTYN 216
S +K + L ++ I PG + +L GP SGKTTLL L G L S SL++ G+ Y
Sbjct: 15 SLRKQV--LFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYG 71
Query: 217 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
+ +R YI Q +G +T R+ + + E+ L+ +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE-- 120
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM---IRGISGGQRKRV 333
+A A +L+ +GL GD + +SGGQ++RV
Sbjct: 121 ----------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRV 150
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393
LV + DE + LDS + +V +++ +G T I ++ D+
Sbjct: 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCT-ILIVTHDNRILDVA 208
Query: 394 DDIILISDGQIV 405
D I+ + DG+++
Sbjct: 209 DRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISG--YPKKQET 897
LN+VS G ++G +G+GK+TL +LAG + ++G +I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG----SILLDGKPLAPKKRA 77
Query: 898 --FARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN- 952
F R Q+ S P+ TV L + + I E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 953 --LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
L R P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SFLDR-----RP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 61/267 (22%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY-GRVTYNGHNMDEF 223
I L+GVS + G + LLG +GKTTLL + G +R GR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG----LVRPRSGRIIFDGEDITGL 70
Query: 224 VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
P A AY+ + +TV E L + R ++A +
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENL-------------LLGAYARRDKEAQERDLE 117
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
++F + Q A T+ SGG+++ + L
Sbjct: 118 EVYELFPRLKERRNQRAG-----------------TL---------SGGEQQMLAIARAL 151
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL---QPAPEAYDLFDDI 396
+ + +DE S GL IV + + I LR +++L Q A A ++ D
Sbjct: 152 MSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRG 207
Query: 397 ILISDGQIVYQGP------REHVLEFF 417
++ +G+IV G V E +
Sbjct: 208 YVLENGRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 14/186 (7%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
+N VS + + G + L+G GAGKTT ++ G + +G + I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R+ GY Q ++TV E++L A L + + K R+ +EE++E + LR++
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRKSK 130
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 131 AS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1019 VVCTIH 1024
V+ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 14/211 (6%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR--KTTGYVTGNITISGYPKKQETFA 899
+L +S PG A++G GAGKTTL+ +L G ++G VT G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 900 RISGYC--EQNDIHSPQVTVYESLL--YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
+ G E ++ + TV + +L + A + + E + + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1013
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1014 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044
++ H +I F LLK G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 33/217 (15%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP----KKQE 896
V+L+ VS G +T+++G GAGK+TL+ +++ + +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 897 TFARISGYCEQNDIHSPQVTVYESLL------YSAWLRLSPEVDSKTRKMFIEEVMELVE 950
++S ++N I+S ++TV L+ YS RL+ E + I E +E +
Sbjct: 73 LAKKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
L L + + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 1011 NTVDT-GRTVVCTIHQPSIDIFEA---FDELFLLKRG 1043
D G+T+V +H DI A D + LK G
Sbjct: 180 RLADELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 58/246 (23%), Positives = 87/246 (35%), Gaps = 69/246 (28%)
Query: 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
L D+ V+ + +L V+ + G + A+MG G+GK+TL
Sbjct: 1 MMMLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAY 48
Query: 872 VLAGRKTTGY-VT-GNITISG---------------------YPKKQETFARISGYCEQN 908
+ G Y VT G I G YP I G
Sbjct: 49 TIMGHP--KYEVTEGEILFDGEDILELSPDERARAGIFLAFQYP------VEIPG----- 95
Query: 909 DIHSPQVTVYESL--LYSAWLRLSPEVDSKTRKMFIEEVMELVELN---LLRQALVGLPG 963
VT + L +A + +++ +E EL+ L+ L R
Sbjct: 96 ------VTNSDFLRAAMNARRGARGILPEFIKEL--KEKAELLGLDEEFLER-------Y 140
Query: 964 VN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022
VN G S ++KR I L+ P + +DEP SGLD A IV + + GR V+
Sbjct: 141 VNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLII 200
Query: 1023 IHQPSI 1028
H +
Sbjct: 201 THYQRL 206
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT--GNITISGYPKKQETFARISGYCEQN 908
G + +G GAGKTT + +L+G + T+G V G + + ++++ RI Q
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFLRRIGVVFGQK 103
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968
+ V +S A + P K R ++E+ EL++L + L+ P V LS
Sbjct: 104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKR---LDELSELLDL----EELLDTP-VRQLS 155
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1024
QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+ T H
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LRLYGRVTYNG 217
++H IL+ +S I PGR+T LLG +GK+TLL ALAG L R+ G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 218 HNMDEFVPQRTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
+ R A A + Q + AFSAR + RY ARR A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
+ D ++ +A A G A +VG + + +SGG+ RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 335 TGEML---------VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP 385
+L P + +DE + LD + ++++++R+ L + P
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215
Query: 386 APEAYDLFDDIILISDGQIVYQGPREHVL 414
A D I +++DG IV G VL
Sbjct: 216 NLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 825 DMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG---RKTTGY 881
++ + K R V++D VS G + L+G GAGKTT ++ G R
Sbjct: 8 NLAKAYKGRRVVED-------VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 882 VTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMF 941
+ + IS P I GY Q +++VY++L+ A L++ ++ ++ R+
Sbjct: 61 IIDDEDISLLPLHARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDR 117
Query: 942 IEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
E+ME + LR ++ LS +R+R+ IA L ANP I +DEP +G+D +
Sbjct: 118 ANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
Query: 1002 AAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFE 1032
+ R + + D+G V+ T H + ++ + E
Sbjct: 173 VIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 69/282 (24%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
ILKGV+ ++ G + ++GP SGK+TL +AG S G + + G ++ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 228 TAA---YIS-QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
A +++ Q+ I ++ E L + ARR + + LD
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPLD 115
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR-----GISGGQRKRVTTGEM 338
+ + L +LG+D +E + G SGG++KR +M
Sbjct: 116 LL--DFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 339 LVGPAQAFFMDEISTGLDSSTT---FQIVNSLRQ----FIHILRGTTLISLLQPAPEAYD 391
+ + +DEI +GLD + +N LR+ F+ I L++ ++P
Sbjct: 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP------ 212
Query: 392 LFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADF 433
D + ++ DG+IV G E E E KG
Sbjct: 213 --DYVHVLLDGRIVKSGDVELAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 58/250 (23%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
L VS +RPGR LLGP +GK+TL L + G+++ GH++ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 229 AAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAE------- 115
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
+L LGL A+ D+ +R ++GG R+RV L+
Sbjct: 116 -----------------LLARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQF-----IHILRGTTLISLLQPAPEAYDLFDDIILIS 400
+DE + GLD ++ I +R + +L T L+ ++ D ++++
Sbjct: 154 LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLH 206
Query: 401 DGQIVYQGPR 410
G+++ G
Sbjct: 207 RGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-12
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 27/167 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTG--YVTGNITISGYPKKQETF 898
L +S + + G L+G +G GKTTL+ ++AG R+T G Y G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-ITRLPPQKRDY 78
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
G Q+ P +TV +++ Y K R M EV E V L L
Sbjct: 79 ----GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAELL---DL 121
Query: 959 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 9e-12
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 70/263 (26%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYN 216
SR ILKG+S I PG+ L+G GK+T++ L R Y G + +
Sbjct: 12 SRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILLD 63
Query: 217 GHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
G ++ + + +SQ + + + T+ E + +
Sbjct: 64 GVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG---------------------- 100
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG--ISGGQRK 331
KPD + +AA + + + D+I+ L DT+VG+ RG +SGGQ++
Sbjct: 101 ---KPDATDEEVEEAA-----KKANIHDFIMS---LPDGYDTLVGE---RGSQLSGGQKQ 146
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQP 385
R+ L+ + +DE ++ LD+ + + +L + + +G T I S ++
Sbjct: 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIRN 203
Query: 386 APEAYDLFDDIILISDGQIVYQG 408
A D I ++ +GQ+V QG
Sbjct: 204 A-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 65/259 (25%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYN 216
L+ +L +S ++ G + LGP +GKTT + + G K DS G +T++
Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-----GEITFD 60
Query: 217 GHNMDEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
G + + +R A I + +T RE L AR G+ R+K
Sbjct: 61 GKSYQKNIEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI------------RKKRI 107
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
D +L ++GL + ++G S G ++R+
Sbjct: 108 --------------------------DEVLDVVGLKD-----SAKKKVKGFSLGMKQRLG 136
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR---GTTLIS--LLQPAPEA 389
L+G +DE + GLD + LR+ I LR T LIS LL E
Sbjct: 137 IALALLGNPDLLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EI 189
Query: 390 YDLFDDIILISDGQIVYQG 408
+ D I +I+ G+++ +G
Sbjct: 190 QKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 67/259 (25%), Positives = 97/259 (37%), Gaps = 43/259 (16%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG- 217
+S I+ GV PG +T LLGP SGK+TLL LAG L G V G
Sbjct: 7 VSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGV 63
Query: 218 --HNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
H + R A + Q +TVR+ +A L + R AG
Sbjct: 64 DLHGLSRRARARRVALVEQDSDTAVPLTVRDVVA--------------LGRIPHRSLWAG 109
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
D D V D L L AD + +SGG+R+RV
Sbjct: 110 ---DSPHDA-------------AVVDRALARTELSHLADRDMST-----LSGGERQRVHV 148
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395
L + +DE + LD + + +R+ G T+++ L A D
Sbjct: 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDH 206
Query: 396 IILISDGQIVYQGPREHVL 414
++++ G++V GP VL
Sbjct: 207 VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 28/166 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV---TGNITISGYPKKQETFA 899
L+ VS + G + +G GAGK+T M ++ TGY+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKII-----TGYLPPDSGSVQVCGEDVLQNPKE 72
Query: 900 --RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R GY + H+P +Y + +L+ + ++ + V E++EL
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL------ 120
Query: 958 LVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
VGL + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 121 -VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 857 ALMGVTGAGKTTLMDVLAG--RKTTGYVTGNIT-ISGYPKKQETFARISGYCEQNDIHSP 913
++G TG+GK+ L++ +AG + +G + N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 914 QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973
+TVY+++ Y R + + + + + I E++ + L L R+ P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-LNRK-----PET--LSGGEQQ 136
Query: 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 38/216 (17%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGY-P-KKQETFARISGYCEQN 908
G + +G GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGL---- 101
Query: 909 DIHSPQVTVYESLLYSAW-------LRLSPEVDSKTRKMFIEEVMELVEL----NLLRQA 957
+ L W L + + F E + L E+ L+
Sbjct: 102 -----VMGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1016
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 154 ------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 208 ATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 75/309 (24%)
Query: 122 FEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNI-LSSRKKHITILKGVSGIIRPGR 180
F L E G+RA+ G + N+ + L +S +I PG
Sbjct: 308 FTLLDSPPEKDTGTRAIER--------ARGDVEFRNVTFRYPGRDRPALDSISLVIEPGE 359
Query: 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEFVPQ---RTAAYIS 233
L+G SGK+TL+ + R Y G++ +GH++ ++ R A +S
Sbjct: 360 TVALVGRSGSGKSTLVNLIP-------RFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEG 293
Q DV + T+ +A+ Q A E+A
Sbjct: 413 Q-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL------------------- 443
Query: 294 QEASVVTDYILKI-LGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIS 352
A+ D++ K+ LGLD T +G+ + +SGGQR+R+ L+ A +DE +
Sbjct: 444 -AAAYAQDFVDKLPLGLD----TPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEAT 497
Query: 353 TGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPAPEAYDLFDDIILISDGQIVY 406
+ LD+ + + +L +++G TTL+ S ++ A D I+++ DG+IV
Sbjct: 498 SALDNESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVE 547
Query: 407 QGPREHVLE 415
+G +L
Sbjct: 548 RGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
+N++S + L+G GAGK+TL+ ++ G R T+G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTRKDLHK 71
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
I E ++ +T E+L L P DS+ I+EV+ +V+L +
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTNTGKKKAK 123
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 48/244 (19%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM---- 870
+ F++VT++ D R VL VS G A++G +G+GK+T++
Sbjct: 1 IEFENVTFAYD-----------PGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 871 ---DVLAGRKTTGYVTGNITISGYPKK---QETFARISGYCEQ-----NDIHSPQVTVYE 919
DV +G I I G + ++ R G Q ND T+
Sbjct: 49 RFYDVSSGS---------ILIDGQDIREVTLDSLRRAIGVVPQDTVLFND------TIGY 93
Query: 920 SLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAV 979
++ Y EV + I + +++ +VG G+ LS +++R+ IA
Sbjct: 94 NIRYGRPDATDEEVIEAAKAAQIHD--KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIAR 150
Query: 980 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1039
++ NP I+ +DE TS LD + +R V GRT + H+ S I A D++ +
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIV 207
Query: 1040 LKRG 1043
LK G
Sbjct: 208 LKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 77/270 (28%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNM 220
+LK VS I G+ ++GP SGK+T+L L R Y G + +G ++
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL-------FRFYDVSSGSILIDGQDI 65
Query: 221 DEF-----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
E VPQ T + +D T+ + +
Sbjct: 66 REVTLDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------ 98
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQ--EASVVTDYILKILGLDVCADTMVGDEMIRG--I 325
+PD AT+ + EA+ KI+ DT+VG+ RG +
Sbjct: 99 -------RPD----------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKL 138
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP 385
SGG+++RV ++ +DE ++ LD+ T +I +LR + +G T I +
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIVIAHR 195
Query: 386 APEAYDLFDDIILISDGQIVYQGPREHVLE 415
+ D II++ DG+IV +G E +L
Sbjct: 196 LSTIVNA-DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-11
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 26/212 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK-QETFARI 901
L+ +S R G + ALMG GAGK+TL+ +L+G G+I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 902 -SG----YCEQNDIH-SPQVTVYESLLYSAWLRLSPE----VDSKTRKMFIEEVMELVEL 951
+G Y E +H P++TV E+L +L P V+ + E +E + +
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
++ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 131 DIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185
Query: 1012 TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
GR ++ H+ +IF D + + K G
Sbjct: 186 LRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-11
Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 59/319 (18%)
Query: 752 LGVGALL--------GFIILFNI--GFALA---LSFLNWSADDIRRRDSSSQSLETITEA 798
LG+GA L G +I +I G ALA L+ NW R+ S + L +
Sbjct: 261 LGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQ--SYKRLNELLAE 318
Query: 799 NQPKRRGMVLPFEPHS-LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTA 857
M LP P L+ + +T Q+ +L +S A + G
Sbjct: 319 LPAAAERMPLP-APQGALSVERLTA-APPGQKK----------PILKGISFALQAGEALG 366
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQ 914
++G +G+GK+TL +L G +G++ + G +Q E R GY Q D+
Sbjct: 367 IIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFD 423
Query: 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIE-----EVMELVELNLLR-----QALVGLPGV 964
T+ E++ R E D + IE V EL+ LR +G G
Sbjct: 424 GTIAENIA-----RFGEEADPEK---VIEAARLAGVHELI----LRLPQGYDTRIG-EGG 470
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
LS QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 1025 QPSIDIFEAFDELFLLKRG 1043
+PS + D++ +L+ G
Sbjct: 531 RPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 867 TTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS----GYCEQNDIHSPQVTVYESLL 922
+TL+ ++ G +G I + G + ++ G Q+ P++TV E+L
Sbjct: 1 STLLKLITGL--LQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELV 982
+ K EE +E V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLP----DFLDREPVGTLSGGQKQRVAIARALL 106
Query: 983 ANPSIIFMDEPTS 995
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 46/201 (22%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L+ + + G+S + G +L GP SGKTTLL +AG L G + +G
Sbjct: 8 LACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGG 64
Query: 219 NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
++D+ Y+ + +TV E L F A G
Sbjct: 65 DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---------------------- 102
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+LD+ AAA L+ +GL A G +S GQ++RV +
Sbjct: 103 GEELDI---AAA-------------LEAVGLAPLAHLPFGY-----LSAGQKRRVALARL 141
Query: 339 LVGPAQAFFMDEISTGLDSST 359
LV + +DE + LD++
Sbjct: 142 LVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-11
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQET 897
+V + VS + + G + AL+G GAGK+TLM +L G + +G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 898 FARISGYCEQND--------IHS-----PQVTVYESLLYSAWLRLSPEVD-SKTRKMFIE 943
RI D +H P +TV E+++ +D + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 944 EVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
E+ E L + A V LS +++R+ I L ++ +DEPT+ L + A
Sbjct: 123 ELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1004 IVMRTVRNTVDTGRTVV 1020
+ +R G+T++
Sbjct: 178 ELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-11
Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 51/320 (15%)
Query: 752 LGVGALL--------GFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITE--ANQP 801
LG+GA L G +I +I AL+ ++ + ++ + Q+ + + E AN P
Sbjct: 243 LGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302
Query: 802 -KRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMG 860
+ M LP L+ ++VT ++ LRG+ S + + G A++G
Sbjct: 303 SRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGI-----------SFSLQAGEALAIIG 351
Query: 861 VTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTV 917
+G+GK+TL ++ G +G++ + G KQ ETF + GY Q D+ TV
Sbjct: 352 PSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTV 408
Query: 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP---------GVNGLS 968
E++ R D E+++E +L + + ++ LP G LS
Sbjct: 409 AENIA-----RFGENADP-------EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
QR+R+ +A L +P ++ +DEP S LD + ++ G TVV H+PS
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS- 515
Query: 1029 DIFEAFDELFLLKRGGQEIY 1048
+ D++ +L+ G +
Sbjct: 516 -LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 6e-11
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-ETFA 899
+L+ +S G L AL+G +G GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R QN P + V +++ + + P+ D R + + ++LV L A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---DAAA 132
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1017
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 133 HLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRG 1043
T++C H D D+ ++K G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 7e-11
Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 26/214 (12%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
+L+ V + R G L L+G GAGKTTL+ + G T G + ++G + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 902 SGYCEQNDIHSPQVT----------VYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
S + PQ T V E R ++ +E ME +
Sbjct: 76 S----RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGV 129
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
P V LS +R+R+ +A L ++ +DEPT+ LD + VR
Sbjct: 130 A----QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184
Query: 1012 TVDTGRTVVCTIHQPSIDIFEAF-DELFLLKRGG 1044
VD G+T V IH +D+ + DEL LL G
Sbjct: 185 LVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 8e-11
Identities = 58/280 (20%), Positives = 105/280 (37%), Gaps = 49/280 (17%)
Query: 156 LNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTY 215
++ L T+L +S I G + L+G GKTTLL A+AG + ++ L GR+
Sbjct: 8 IDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAI 66
Query: 216 NGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
++ P +R A + Q+ + V + +AF R A++ A
Sbjct: 67 ADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKA 112
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
I A V D LK++GL + +SGG ++R+
Sbjct: 113 DI-------------------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIA 147
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394
+ +DE + LD++ + + L T++ + +A L D
Sbjct: 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD 207
Query: 395 DIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
++ DG++ G + + + P A+FL
Sbjct: 208 KAGIMKDGRLAAHGEPQAL--------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 61/242 (25%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM--DEFVPQ 226
++GVS +R G + LLGP +GKTT + L L + GR T GH++ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
R + Q E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346
D +L +GL D +++ SGG R+R+ LV +
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 347 FMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVY 406
F+DE + GLD T + + + + G T++ EA L D + +I G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 407 QG 408
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 56/269 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFVPQ 226
LK VS + G ++LGP SGK+ LL +AG K DS G++ NG ++ P+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-----GKILLNGKDITNLPPE 69
Query: 227 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
R +Y+ Q+ MTV + +A+ G+ R E+ R+
Sbjct: 70 KRDISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK--------------- 109
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
I ++LG+D + + +SGG+++RV LV +
Sbjct: 110 --------------VLEIAEMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKI 150
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
+DE + LD T ++ L+ I G T++ + EA+ L D + ++ +G+++
Sbjct: 151 LLLDEPFSALDVRTKEKLREELK-KIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209
Query: 406 YQGPREHVLEFFEFMGFKCPERKGVADFL 434
G E V FK P+ + VA+FL
Sbjct: 210 QVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 831 KLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNIT 887
+ L+ VS G + ++G +GAGK+TL+ ++ R T+G V
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQD 69
Query: 888 ISGYPKKQ-ETFARISGYCEQ--NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE 944
++ + + + G Q N + S TV+E++ + L L+ V K +
Sbjct: 70 LTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QR 121
Query: 945 VMELVELNLLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
V EL+EL VGL LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 122 VAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQN---D 909
G + AL+GV G+GK+TL L G +G I+I G P +Q + Y Q+ D
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 910 IHSPQVTVYESLL-----YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964
P V V + ++ + WLR + + D + + + V++ R +G
Sbjct: 91 WSFP-VLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG---- 141
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 -ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
L VS G L ++G +G GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
G QN+ P + V +++ + LR ++ R+ +++ ALVGL
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQML----------ALVGL 122
Query: 962 PG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
G + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 37/244 (15%)
Query: 814 SLTFDDVTYSVD--MPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
++ FD+V+Y+ P E + ++ V+ F G A++G TG+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 872 VLAG--RKTTGYVT-GNITISGYPKKQETFARISGYCEQNDIHSPQVTVY---ESLLYSA 925
+ + TTG VT +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 926 WLRLSPEVDSKTRKMFIEEVME-----LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVE 980
+ K KM ++EV L++L R + P +S Q +++ I
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSI 159
Query: 981 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFL 1039
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIV 218
Query: 1040 LKRG 1043
+K G
Sbjct: 219 MKEG 222
|
Length = 286 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI- 380
+RG+S QRKR+T G L F+DE ++GLDS + IV L++ G ++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 381 SLLQPAPEAYDLFDDIILI-SDGQIVYQG 408
++ QP+ ++ FD ++L+ G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 42/221 (19%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRLYGRVTYNGHNMDEF 223
+ L VS +RPG + L+GP +GKTTL ++G L S G V ++G ++
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS-----GSVLFDGEDITGL 67
Query: 224 VPQRTAAY-IS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
P A I Q E+TV E + +A+ + + +L ARRE+
Sbjct: 68 PPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE----- 119
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
+ A E +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 ------ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARAL 158
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
+ +DE + GL+ T ++ +R+ RG T++
Sbjct: 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 69/278 (24%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
T + +S I+ G LLGP GKTTLL +AG + S G + +G ++ + V
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS-----GEILLDGEDITD-V 72
Query: 225 P--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
P +R + Q H MTV E +AF + + ++ K A I
Sbjct: 73 PPEKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI 113
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
KA E L+++GL+ AD +SGGQ++RV
Sbjct: 114 ----------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALA 148
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396
LV + +DE + LD+ Q+ L++ + G T + + EA + D I
Sbjct: 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRI 207
Query: 397 ILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+++DG+I G E + ++ P + VADF+
Sbjct: 208 AVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
L VS G L G +GAGK+TL+ ++ G R T G + +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLLRQA 957
R G Q+ P TVYE++ V K + V E+++L L +A
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPL------RVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G
Sbjct: 132 RA-LP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT 188
Query: 1018 TVVCTIH 1024
TV+ H
Sbjct: 189 TVLMATH 195
|
Length = 223 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 69/282 (24%), Positives = 104/282 (36%), Gaps = 86/282 (30%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
LS R T+L VS +RPG + +LGP +GK+TLL AL+G+L G V NG
Sbjct: 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGR 64
Query: 219 NMDEFVPQRTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
+ ++ P A A + QH +L+F + V
Sbjct: 65 PLADWSPAELARRRAVLPQH----------SSLSFPFTVEEV------------------ 96
Query: 276 IKPDPDLDVFMKAA--ATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
V M A E + L + L + +SGG+++RV
Sbjct: 97 --------VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV 143
Query: 334 TTGEMLV------GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR---------GTT 378
+L GP + +DE ++ LD L H+LR G
Sbjct: 144 QLARVLAQLWEPDGPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLA 193
Query: 379 LISLLQPAPEAYDL------FDDIILISDGQIVYQGPREHVL 414
+I +L +DL D I+L+ G++V G VL
Sbjct: 194 VIVVL------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 55/230 (23%)
Query: 782 IRRRDSSSQSLETITEANQPKRRGMVLPFEPHS-----LTFDDVTYSVDMPQEMKLRGVL 836
I+R + L + K P L F++V+
Sbjct: 284 IKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKG------------Y 331
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE 896
D +LL +S G A++G GAGK+TL+ +LAG G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 897 TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
GY +Q+ KT + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 957 AL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 3e-10
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYN 216
LS R T L +S + G + LLGP +GKTTL+ + G K DS G +
Sbjct: 6 LSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS-----GEIKVL 60
Query: 217 GHNM---DEFVPQRTAAYISQHDVHIGEMTVRETLAFS 251
G ++ E V +R Y+ + +TVRE L S
Sbjct: 61 GKDIKKEPEEVKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 3e-10
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
+LK VS I+PG ++GP SGK+TLL L LRLY G + +G ++ +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL-------LRLYDPTSGEILIDGVDLRDL 69
Query: 224 VPQ---RTAAYISQHDVHIGEMTVRE 246
+ + AY+ Q D + T+RE
Sbjct: 70 DLESLRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 56/273 (20%), Positives = 113/273 (41%), Gaps = 72/273 (26%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVT 214
S +K LK ++ I+PG ++GP +GKTTL+ L +R Y G++
Sbjct: 10 FSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLL-------MRFYDPQKGQIL 61
Query: 215 YNG---HNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
+G ++ + + Q D + T+ E +
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------- 100
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDEMIRG--ISGG 328
+P+ + ++AA G D+I+K+ G DT++G+ G +S G
Sbjct: 101 -----RPNATDEEVIEAAKEAG-----AHDFIMKLPNGY----DTVLGE---NGGNLSQG 143
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SL 382
+R+ + ++ + +DE ++ +D+ T I +L + +++G T I S
Sbjct: 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLST 200
Query: 383 LQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
++ A D I+++ DG+I+ +G + +L
Sbjct: 201 IKNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 71/277 (25%), Positives = 105/277 (37%), Gaps = 68/277 (24%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYN 216
+ + + + VS +R G L+G SGK+TL LAG L S G + ++
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 217 GHNMD----EFVPQR-TAAYISQH-----DVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
G ++D E R + Q + MTV + LA R G GS E
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE---- 404
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326
RR + A + L+++GL D +S
Sbjct: 405 --RRARVAEL---------------------------LELVGLP----PEFLDRYPHELS 431
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT--LIS--- 381
GGQR+RV L + +DE + LD S Q++N L+ L G T IS
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDL 490
Query: 382 --LLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEF 416
+ A D + ++ DG+IV +GP E V E
Sbjct: 491 AVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 42/204 (20%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT---GNITISGYPKKQ--- 895
LL+ VS RPG + A++G GAGK+TL+ L +G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-----SGELSPDSGEVRLNGRPLADWSP 71
Query: 896 ETFARISGYCEQNDIHSPQV---TVYESLLYSAWLRLSPEVDSKTR-KMFIEEVMELVEL 951
AR Q HS TV E + + +P S+ + + V+L
Sbjct: 72 AELARRRAVLPQ---HSSLSFPFTVEEVV----AMGRAPHGLSRAEDDALVAAALAQVDL 124
Query: 952 NLLR----QALVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARA 1001
L L G G EQ +R+ +A L P + +DEPTS LD
Sbjct: 125 AHLAGRDYPQLSG--G------EQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 1002 AAIVMRTVRN-TVDTGRTVVCTIH 1024
V+R R + G V+ +H
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-ETFA 899
V L+ VS + G L+G +G GKTTL+ ++AG +T +G I + G
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHK 71
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
R QN P +TV+E++ + L+ P+ + K R + E ++LV+L
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKP 128
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 -----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 850 FRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YPKKQETFA 899
+ G + AL+G +G GKTT + D+ G + VTG I + G Y + + A
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR----VTGRILLDGQDIYGPRVDPVA 82
Query: 900 --RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R G Q P ++V+++++ A L+L+ D +ME+ E +L A
Sbjct: 83 MRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAERSLRGAA 133
Query: 958 L-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
L + P GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 134 LWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 32/204 (15%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTL------MDVLAGRKTTGYVTGNITISG---YPK 893
LNSVS F P +TAL+G +G+GK+TL M+ L T +TG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 894 KQET--FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE------V 945
+ +T + G Q P +++YE+++Y LRL D + +E+ +
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 946 MELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
+ V+ L AL GLS Q++R+ IA L +P II +DEPTS LD +A +
Sbjct: 135 WDEVKDRLHDSAL-------GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
Query: 1006 MRTVRNTVD--TGRTVVCTIHQPS 1027
T+ D T V ++ Q S
Sbjct: 188 EETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 3e-10
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ F+ V Y+ R + D L + + G TAL+G TG+GK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEV--------KKGSYTALIGHTGSGKSTLLQHLN 53
Query: 875 G--RKTTGYV-TGNITISGYPKKQET--FARISGYCEQNDIHSPQVTVYESLLYSAWLRL 929
G + T G V G+I +S K++E + G Q P+ ++E + +
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKD-VAF 108
Query: 930 SPE---VDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 986
P+ + + + E +E+V L + P LS Q +R+ IA L P
Sbjct: 109 GPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP--FELSGGQMRRVAIAGILAMEPE 164
Query: 987 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
++ +DEPT+GLD +A +M+ + +G+TVV H D+ + D ++LL++G
Sbjct: 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV--LAGRKTTGYVT-GNITISGYP--KKQ 895
+L+ + +PG + A++G +G+GKTTL+ L + G + G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 896 ETFARI----SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
+ R G+ QN P TV E+++ P + K EE
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG------PVIVKGEPK---EEATARAR- 126
Query: 952 NLLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
LL A VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 127 ELL--AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1007 RTVRNTVDTGRTVVCTIHQPS 1027
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 55/295 (18%)
Query: 753 GVGALLG---FIILFNIGFALALSF----------LNWSADDIRRRDS-SSQSLETITEA 798
G GAL + L + FA +F L RR + Q E
Sbjct: 269 GAGALAQPGAALALL-VIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD 327
Query: 799 NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTAL 858
Q G L S T+ Q+ K L + + G A+
Sbjct: 328 EQTATTGQALELRNVSFTYPG--------QQTKA----------LKNFNLTLAQGEKVAI 369
Query: 859 MGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVY 918
+G +G+GK+TL+ +LAG G+IT++G I+ EQ + V
Sbjct: 370 LGRSGSGKSTLLQLLAG--AWDPQQGSITLNGVE--------IASLDEQALRETISVLTQ 419
Query: 919 ESLLYSAWLR---LSPEVDSKTRKMFIEEVMELVEL-NLLRQALVGLP-----GVNGLST 969
L+S LR D+ +++ ++ V L LL A GL G LS
Sbjct: 420 RVHLFSGTLRDNLRLANPDASDEELW--AALQQVGLEKLLESAPDGLNTWLGEGGRRLSG 477
Query: 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
+R+RL +A L+ + + +DEPT GLD V+ + + G+T++ H
Sbjct: 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 47/201 (23%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYN 216
NI S KK IL +S + G + L G +GKTTL LAG + S G + N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLN 60
Query: 217 GHNMDEFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
G + +++ Y+ Q D + +VRE L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------------------ 96
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
+K ++A +LK L L + +SGGQ++R+
Sbjct: 97 ----------LKELDAGNEQAE----TVLKDLDLYALKE-----RHPLSLSGGQKQRLAI 137
Query: 336 GEMLVGPAQAFFMDEISTGLD 356
L+ DE ++GLD
Sbjct: 138 AAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITI-----SGYPKKQET 897
L ++ PG + L G +G+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 898 FARIS-GYCEQ--NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
R + GY Q N + +T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG-- 132
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1013
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++
Sbjct: 133 -DHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 1014 DTGRTVVCTIHQPSI 1028
+ G T++ H I
Sbjct: 190 EQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-----YPKKQET 897
L+ VS R G L G +GAGKTTL+ +L G T G + I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLP 75
Query: 898 FARIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
R G Q+ P TVYE++ +R E + + R + + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGL---EH 129
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1017 RTVVCTIHQPSI 1028
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-VTGNITISG-----YPKKQ 895
LL +V+ G + LMG +G GK+TL+ + G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
R G Q+ + P ++V ++LL++ L + R+ L R
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARR-------NAANAALER 121
Query: 956 QALVGL----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
L G P LS QR R+ + L+A P + +DEP S LD
Sbjct: 122 SGLDGAFHQDPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 78/320 (24%), Positives = 119/320 (37%), Gaps = 71/320 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
++ + I G LLGP GKTT+L +AG DS GR+ +G ++
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS-----GRIMLDGQDITHVP 82
Query: 225 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
R + Q MTV E +AF R Q + E+ R A
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ +DE + LD Q+ N L+ L G T + + EA + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 404 IVYQG-PREHVLEFFEFMGFKCPERKGVADFLQE-------VTSRKDQEQYWANKEEPYR 455
I G PRE + E P+ VA F+ E V R D+++ AN E
Sbjct: 223 IEQDGTPRE-IYE--------EPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGREC 273
Query: 456 FVTVKEFADAFQSFSVGQIL 475
+ V + GQ L
Sbjct: 274 NIYVN------FAVEPGQKL 287
|
Length = 375 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 21/202 (10%)
Query: 850 FRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKK-----QETFARIS 902
F +T L+G G GK+TL L+G R G V Y K+ ++ A +
Sbjct: 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVF 83
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962
EQ + T +S + + L TR+ ++E + LV+ R
Sbjct: 84 QDPEQQIFY----TDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ----- 132
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G V+ +
Sbjct: 133 PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIIS 192
Query: 1023 IHQPSID-IFEAFDELFLLKRG 1043
H ID I+E D +++L++G
Sbjct: 193 SH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 155 SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVT 214
+ LS R T L VS ++ G + L+GP SGK+TLL A+AG L + G +
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEIL 57
Query: 215 YNGHNMDEFVPQ---RTAAYISQ 234
+G ++ + + R Y+ Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 51/262 (19%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEF 223
+T + VS +RPG + L+GP +GKTTL + G K S G V + G ++
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS-----GTVIFRGRDITGL 71
Query: 224 VPQRTAAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
P R A I+ Q + +TV E +A A + S + E+ A
Sbjct: 72 PPHRIARLGIARTFQI-TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA---- 126
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+ A +L+ +GL AD G+ +S GQ++R+
Sbjct: 127 -------RERARE-----------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARA 163
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPE-----AYDLF 393
L + +DE + GL+ T ++ +R+ LR +++L E L
Sbjct: 164 LATQPKLLLLDEPAAGLNPEETEELAELIRE----LRDRGGVTIL--LIEHDMKLVMGLA 217
Query: 394 DDIILISDGQIVYQGPREHVLE 415
D I++++ G+++ +G E V
Sbjct: 218 DRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 64/271 (23%), Positives = 102/271 (37%), Gaps = 51/271 (18%)
Query: 148 IIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL-------LALA 200
I L L +S R+ IL +S + PG ++GP +GKTTLL +
Sbjct: 26 EINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS 85
Query: 201 GKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYIS---QHDVHIGEMTVRETLAFSARCQGV 257
G + R +G+ F ++ +S + E TVR+ + S +
Sbjct: 86 GDVTLLGRRFGKGETI------FELRKRIGLVSSELHERFRVRE-TVRDVVL-SGFFASI 137
Query: 258 GSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317
G E LT AAA +L++LG AD
Sbjct: 138 GIYQEDLTAE------------------DLAAAQW----------LLELLGAKHLADRPF 169
Query: 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGT 377
G +S G+++RV LV + +DE + GLD Q++N L +
Sbjct: 170 GS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAP 224
Query: 378 TLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
L+ + A E F +L+ +G++V QG
Sbjct: 225 ALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
L +S PG AL+G +G GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 896 ---ETFARISGYCEQNDIHSPQV---TVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMEL 948
G Q P + T+ E++ Y EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
+ LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 PDG---YDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181
Query: 1009 VRNTVDTGRTVVCTIH 1024
+ + GRT + H
Sbjct: 182 L-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L ++ + G +TA++G GAGK+TL L G + ++G + + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 901 IS-GYCEQNDIHSP-QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
S G Q+ + +VY+ + + A PE +EV + V+ L R +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPE----------DEVRKRVDNALKRTGI 131
Query: 959 VGLPG--VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1015
L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 132 EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL 191
Query: 1016 GRTVVCTIHQPSIDIFEAF-DELFLLKRG 1043
G T++ H IDI + D +F++K G
Sbjct: 192 GLTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 8e-10
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 65/190 (34%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
L ++ +TAL+G +G GK+TL+ D++ G + V G + + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 896 ETFARISGYCEQNDIHSPQV---------------------TVYESLLYSAWLRLSPEVD 934
+I+ P+V ++Y+++ Y LRL D
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG--LRLHGIKD 119
Query: 935 SKTRKMFIEEVMELVELNLLRQALVGLP------GVNGLSTEQRKRLTIAVELVANPSII 988
E+ E+VE +L + AL GLS Q++RL IA L P ++
Sbjct: 120 K--------ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVL 171
Query: 989 FMDEPTSGLD 998
MDEPTS LD
Sbjct: 172 LMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 69/224 (30%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ET 897
LL+ +S F G +T L+G G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPP-SEGEILLDAQPLESWSSKA 82
Query: 898 FARISGYCEQNDIHSPQVTVYESLL------YSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
FAR Y Q + +TV E + + A R K +EE + LV L
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-----VEEAISLVGL 137
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-R 1010
L LV + LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 138 KPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 1011 NTVDTGRTVVCTIHQPSIDIFEAF---DELFLLKRGGQEIYVGP 1051
+ + G TV+ +H DI A D L L RGG+ I G
Sbjct: 193 LSQERGLTVIAVLH----DINMAARYCDYLVAL-RGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-10
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
VG G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R +
Sbjct: 584 NTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICR 641
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
GRTV+ H+ + A D + +L++G
Sbjct: 642 GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 8e-10
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 852 PGV-LTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG---YPKKQETF----ARISG 903
PG +TA+ G +G+GKTTL+ ++AG T G I ++G + ++ F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGL-TRPDE-GEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963
Y Q P ++V +L Y R++ E V+EL+ + L L G
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETF---- 898
L V+ + G + A+MG G+GK+TL +AG + +G I G Q+
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QDLLELEP 71
Query: 899 ---ARISGYCE-QNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMF-----IEEVMELV 949
AR + Q P V+ E L + R S + + ++ + L+
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPL-DLLDFLKLLKAKLALL 130
Query: 950 ELN--LLRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
++ L + VN G S ++KR I + P + +DE SGLD A IV
Sbjct: 131 GMDEEFLNR------SVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 1007 RTVRNTVDTGRTVVCTIHQPSI 1028
+ + R+ + H +
Sbjct: 185 EGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 69/269 (25%), Positives = 107/269 (39%), Gaps = 43/269 (15%)
Query: 151 GLLNSLNILSSRKKH-ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRL 209
GL SLN RK+ I ++ +S I G + LG +GK+T L L G L L
Sbjct: 21 GLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPT 77
Query: 210 YGRVTYNGHNMDEFVPQRTAAYISQHDVHIG-EMTVRETLAFSARCQGVGSRYEMLTELA 268
G+V NG P R ++ IG M + L + E+L +
Sbjct: 78 SGKVRVNG-----KDPFRRR---EEYLRSIGLVMGQKLQLWW---DLPALDSLEVLKLIY 126
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328
PD D F + D++ +IL L+ + + R +S G
Sbjct: 127 E-------IPD---DEFAERL-----------DFLTEILDLE----GFLKWPV-RKLSLG 160
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPE 388
QR R L+ P + F+DE + GLD + I L++ + R T++ +
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE-YNEERQATVLLTTHIFDD 219
Query: 389 AYDLFDDIILISDGQIVYQGPREHVLEFF 417
L D ++LI GQ+V+ G + E F
Sbjct: 220 IATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 9e-10
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 48/256 (18%)
Query: 153 LNSLNI-LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYG 211
LN ++ LS K + L+ VS I G + ++LGP GKTTLL +AG + S G
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RG 60
Query: 212 RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
+ NG ++ P + Q++ + + V + +AF + +G+ RRE
Sbjct: 61 SIQLNGRRIEG--PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE 111
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRK 331
A +L ++GL + I +SGG R+
Sbjct: 112 IA---------------------------HQMLALVGL---EGA--EHKYIWQLSGGMRQ 139
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391
RV L Q +DE LD+ T Q+ L + G ++ + EA
Sbjct: 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD-LWQETGKQVLLITHDIEEALF 198
Query: 392 LFDDIILIS--DGQIV 405
L ++++S G++V
Sbjct: 199 LATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 9e-10
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 24/224 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY-------PKKQ 895
L++V G + AL+G +G+GK+TL+ R +G +TG+ + + +++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL-----RHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 896 ETFAR-------ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME- 947
AR +GY Q +++V E++L A L +P + E+
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFSWFTREQKQRA 133
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
L L + V+ LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 1008 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 66/255 (25%), Positives = 97/255 (38%), Gaps = 61/255 (23%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTT---LLLALAGKLDSSLRLYGRVTYNGHNMDEF 223
++ G+S ++ G LLGP +GKTT +LL L S+ L G E
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EP 70
Query: 224 VPQRT------AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
VP R + Q D + TVRE L V RY L+ A R +
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLL-------VFGRYFGLSAAAARALVPPL- 122
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
L+ L+ AD VG+ +SGG ++R+T
Sbjct: 123 --------------------------LEFAKLENKADAKVGE-----LSGGMKRRLTLAR 151
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
LV +DE +TGLD + LR + RG T++ EA L D +
Sbjct: 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLC 209
Query: 398 LISDGQIVYQG-PRE 411
+I +G+ + +G P
Sbjct: 210 VIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 41/260 (15%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRLYGRVTY 215
++ IL GV + G + +LG SGK+TLL + G L + + G
Sbjct: 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIP 73
Query: 216 NGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
+ + ++ + Q +TV E +AF T+L
Sbjct: 74 QLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF---------PLREHTKLPESLIR-- 122
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
+L V MK L+++GL D +SGG RKRV
Sbjct: 123 -----EL-VLMK----------------LELVGLR----GAAADLYPSELSGGMRKRVAL 156
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395
+ + F+DE ++GLD + I +R+ L G T+I + + D
Sbjct: 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADR 215
Query: 396 IILISDGQIVYQGPREHVLE 415
+ +++DG+++ +G E +L
Sbjct: 216 VAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 43/251 (17%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
IL +S + G++T L+GP GK+TLL A L G V + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 227 RTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
+ A ++ QH + +TVRE L R P L
Sbjct: 73 QLARRLALLPQHHLTPEGITVRE-----------------LVAYGR---------SPWLS 106
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
++ + +A + A V + ++ ++ AD + D +SGGQR+R +L
Sbjct: 107 LWGRLSAED--NARV--NQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+DE +T LD + +++ +R+ +G T++++L +A D ++++++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 404 IVYQGPREHVL 414
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 49/267 (18%)
Query: 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-SSLRLYGRVTYNGH 218
++ + ++ VS + PG + ++G SGK+TL LAL G L G V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 219 NMDEFVPQ-------RTAAYISQHDVHI--GEMTVRETLAFSARCQGVGSRYEMLTELAR 269
++ + + A I Q + MT+ + + + R G GSR E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE------A 129
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329
R++A +L+ +GL D D +SGG
Sbjct: 130 RKRAV---------------------------ELLEQVGLP---DPERRDRYPHQLSGGM 159
Query: 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPE- 388
R+RV L + DE +T LD +T QI++ L+ G ++ +
Sbjct: 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ-RELGMAVL-FITHDLGV 217
Query: 389 AYDLFDDIILISDGQIVYQGPREHVLE 415
+L D ++++ G+IV GP E +L
Sbjct: 218 VAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 859 MGVTGAGKTTLMDVLAGR--KTTGYVT---GNITISGYPKKQETFARI-----SGYCEQN 908
+G GAGK+TL++ +AG T+G + ++T K+ AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 909 DIHSPQVTVYESLLYSAWLR-----LSPEVDSKTRKMFIEEVMELVE--LNLLRQALVGL 961
P++T+ E+L A R LS ++ + R F E + L N L +GL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDR-IGL 148
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 149 -----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/204 (30%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISG---- 890
D L ++ G + AL+G GAGK+TL G + T+G + I G
Sbjct: 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIK 67
Query: 891 YPKKQETFARIS-GYCEQN---DIHSPQVTVYESLLYSAW-LRLSPEVDSKTRKMFIEEV 945
Y KK R + G QN + +P TV E + + L LS E EV
Sbjct: 68 YDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-----------EV 114
Query: 946 MELVELNLLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
+ V+ L VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 115 EKRVKEALKA---VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
Query: 1001 AAAIVMRTVRNTVDTGRTVVCTIH 1024
A+ +M+ + + G T++ + H
Sbjct: 172 GASQIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 81/251 (32%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG---KLDSSLRLYGRVTYNGHNMDEFV 224
LK ++ + G + ++GP SGK++LL AL G KL S+ + G + Y V
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAY--------V 71
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP---DPD 281
Q +I Q+ T+RE + F G ++ R EK IK +PD
Sbjct: 72 SQ--EPWI-QNG------TIRENILF-------GKPFDE----ERYEKV--IKACALEPD 109
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKRVTTGEML 339
L++ +G T +G+ +GI SGGQ++R++ +
Sbjct: 110 LEIL-----PDGDL-------------------TEIGE---KGINLSGGQKQRISLARAV 142
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-------TTLISLLQPAPEAYDL 392
A + +D+ + +D+ I + + +L T + LL A
Sbjct: 143 YSDADIYLLDDPLSAVDAHVGRHIFENC--ILGLLLNNKTRILVTHQLQLLPHA------ 194
Query: 393 FDDIILISDGQ 403
D I+++ +G+
Sbjct: 195 -DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 68/275 (24%)
Query: 146 ANIIEGLLNSLN-ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--K 202
NIIE ++ L+ + + ++ILKGV +++ G ++GP SGK+TLL LAG
Sbjct: 4 ENIIE--VHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 203 LDS-SLRLYGRVTYNGHNMDE----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 257
S +RL G+ H +DE + R ++ Q I +T E +A +G
Sbjct: 62 PSSGEVRLLGQPL---HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 258 GSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317
S A+ L+ +GL
Sbjct: 119 SSADSRAG--AKAL--------------------------------LEAVGL-------- 136
Query: 318 GDEMI---RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSL----RQF 370
G + +SGG+++RV G F DE + LD +T +I + L R+
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE- 195
Query: 371 IHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
RGTTL+ L+ P+ D + + G++V
Sbjct: 196 ----RGTTLV-LVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 71/333 (21%), Positives = 110/333 (33%), Gaps = 77/333 (23%)
Query: 184 LLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIG 240
LLGP GKTTLL LAG + DS G + +G ++ P R + Q
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS-----GSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVT 300
MTV E +AF + + V E+ R A
Sbjct: 56 HMTVEENVAFGLKMRKVPR-----AEIKPRVLEA-------------------------- 84
Query: 301 DYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTT 360
L+++ L D +SGGQ++RV LV + +DE + LD
Sbjct: 85 ---LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 361 FQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFM 420
Q+ L+ L G T + + EA + D I ++ G+I G E + E
Sbjct: 137 DQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE----- 190
Query: 421 GFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELG 480
P VA F+ E+ + ++ ++ +L G
Sbjct: 191 ---EPANLFVARFIGEINV--------------FEATVIERKSEQV-------VLAGVEG 226
Query: 481 IPFDKTKSHPAALTTKKYGVGKKESLKACNSRE 513
D P + V + E + E
Sbjct: 227 RRCDIYTDVPVEKDQPLHVVLRPEKIVIEEEDE 259
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYP-KKQETFAR 900
L VS G +T ++G G GKTTL+ L G G+I + G K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72
Query: 901 IS---GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
Y Q P++TV E+LL + + +E+ EL +L++
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGL------AALPRRSRKIPDEIYEL--FPVLKEM 124
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 996
L G G + LS Q+++L IA LV P ++ +DEPT G
Sbjct: 125 L-GRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 47/192 (24%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF--V 224
T+ +S + G + GP +GKTTLL LAG L G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
+ Y+ E+T E L F R G G+ + E + AG+
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL-------- 123
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
D + +S GQ++RV + + PA
Sbjct: 124 ---------------------------------EDLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 345 AFFMDEISTGLD 356
+ +DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 33/183 (18%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR 900
LL +VS PG L+G GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG-------LR 67
Query: 901 ISGYCEQNDIHSPQVTVYESLL-----YSAWLRLSPEVDSKTRKMFIEEVMELVEL---- 951
+ GY Q P+ TV + ++ L E + E + EL L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 952 ------NLLRQALVGLPGVNGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLD 998
+AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Query: 999 ARA 1001
+
Sbjct: 186 LES 188
|
Length = 530 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
+N VS G + L+G GAGKTT ++ G R +G + + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKT--RKMFIEEVMELVELNLLRQ 956
R+ GY Q ++TV ++++ A L + E D K RK ++ ++E + LR
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHLRD 134
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
+ + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D G
Sbjct: 135 S----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189
Query: 1017 RTVVCTIH 1024
V+ T H
Sbjct: 190 IGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 25/210 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFA 899
L +SG R G + L+G GAGK+TL+ +AG T+G +G+I +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG--SGSIQFAGQPLEAWSATELA 71
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLLRQAL 958
R Y Q + V W L+ KTR + +V + L + L ++
Sbjct: 72 RHRAYLSQQQTPPFAMPV--------WHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 959 VGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1013
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1014 DTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
G +V + H + + A +LLKRG
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQ 895
D L + +S G + G G+GKTTL+ +LAG G V N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
++ AR Y ++V E+L + + + +EE + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLN--- 116
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
P V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 117 -GFEDRP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1016 GRTVVCTIHQP 1026
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 44/217 (20%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L ++ G L ++G +G GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLS----PEVDSKTRKMFIEEVMELVELNLLRQAL 958
G QN+ P V +++ + L+L+ + +M
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAGVEKMQRLEIAHQML---------------KK 115
Query: 959 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRN 1011
VGL G LS QR+R+ IA L ANP ++ +DEP LDA R M+T+
Sbjct: 116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLL 172
Query: 1012 TV--DTGRTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
+ +TG+ V+ H DI EA EL LL G
Sbjct: 173 KLWQETGKQVLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 43/250 (17%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF--- 223
LK ++ I PG ++GP +GK+TLL + ++ S G + G ++ +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 224 ----VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
+ +R I QH I +TV E + R L + +
Sbjct: 73 KLRKLRRRI-GMIFQHYNLIERLTVLENV-LHGR-------------LGYKPTWRSL--- 114
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
L F + + + A L+ +GL A D++ SGGQ++RV L
Sbjct: 115 --LGRFSEE---DKERAL----SALERVGLADKAYQRA-DQL----SGGQQQRVAIARAL 160
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
DE LD T+ Q+++ L++ I+ G T+I L A D I+ +
Sbjct: 161 AQQPDLILADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQVDLAKKYADRIVGL 219
Query: 400 SDGQIVYQGP 409
G+IV+ G
Sbjct: 220 KAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-09
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT---GNITISGYPKKQET 897
L VS G + AL+G GAGKTTL+ + G R +G + +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 898 FARIS---GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNL 953
R Y + P++TV E+LL L D + ++ +EEV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1014 DTGRTVVCTIHQ 1025
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 55/248 (22%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ F++VT K G +N+++ G L+G +G+GKTT M ++
Sbjct: 1 IEFENVT---------KRYG---GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI- 47
Query: 875 GRKTTGYVTGNITISGYPKKQET---FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
+ +G I I G +++ R GY Q P +TV E++ L P
Sbjct: 48 -NRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENI------ALVP 100
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN-------GLSTEQRKRLTIAVELVAN 984
++ ++ E EL+ L VGL LS Q++R+ +A L A+
Sbjct: 101 KLLKWPKEKIRERADELLAL-------VGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153
Query: 985 PSIIFMDEPTSGLDARAAAIVMRT------VRNTVDTGRTVVCTIHQPSIDIFEAF---D 1035
P ++ MDEP LD + R R + G+T+V H DI EAF D
Sbjct: 154 PPLLLMDEPFGALDP-----ITRDQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLAD 204
Query: 1036 ELFLLKRG 1043
+ ++K G
Sbjct: 205 RIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 59/257 (22%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
IL +S I+PG + ++G SGK+TL KL R Y GRV +GH++
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKL--IQRFYVPENGRVLVDGHDLALA 69
Query: 224 VP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
P +R + Q +V ++R+ +A + P
Sbjct: 70 DPAWLRRQVGVVLQENVLFNR-SIRDNIALA-------------------------DPGM 103
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
++ ++AA G D+I + L DT+VG++ G+SGGQR+R+ L+
Sbjct: 104 SMERVIEAAKLAGAH-----DFISE---LPEGYDTIVGEQGA-GLSGGQRQRIAIARALI 154
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL---LQPAPEAYDLFDDII 397
+ DE ++ LD + I+ ++ I G T+I + L A D II
Sbjct: 155 HNPRILIFDEATSALDYESEHAIMRNMHD---ICAGRTVIIIAHRLSTVKNA----DRII 207
Query: 398 LISDGQIVYQGPREHVL 414
++ G+IV QG + +L
Sbjct: 208 VMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 858 LMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISG------YPKKQETFARISGYCEQNDI 910
L+G +G GKTT + ++AG + T G I I G PK R QN
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKD-----RDIAMVFQNYA 82
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970
P +TVY+++ + LR P+ + R + EV EL+++ L L P LS
Sbjct: 83 LYPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGG 134
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
QR+R+ + +V P + MDEP S LDA+
Sbjct: 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 60/249 (24%), Positives = 94/249 (37%), Gaps = 49/249 (19%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
L GVS I+ G LLGP GKTTLL +AG S G + +G ++
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS-----GEILLDGKDITNLP 68
Query: 225 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
P +R + Q+ +TV E +AF R + + E+ R A
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA--------- 114
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
L ++ L+ A + +SGGQ++RV LV
Sbjct: 115 --------------------LDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALVNEP 149
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ +DE LD + L++ + G T + + EA + D I +++ G+
Sbjct: 150 KVLLLDEPLGALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208
Query: 404 IVYQG-PRE 411
I G P E
Sbjct: 209 IQQIGTPEE 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 53/219 (24%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
+L V+ + G + ALMG G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFI-----EEVMELVELNLLRQ 956
DI L PE ++ +F+ E+ + + LR
Sbjct: 64 ------EDI----------------TDLPPEERAR-LGIFLAFQYPPEIPGVKNADFLR- 99
Query: 957 ALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
VN G S ++KR I L+ P + +DEP SGLD A +V + +
Sbjct: 100 ------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLL------KRGGQEIY 1048
G++V+ H + + D + +L K G +E+
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 31/222 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
++ V+ G L+G +G+GKTT + ++ T+G + IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPE---VDSKTRKMFIEEVMELVELNLLR 955
R GY Q P +TV E++ P+ D + K +E+++LV L+
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1012
+ P + LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1013 VDTGRTVVCTIHQPSIDIFEAF---DELFLLKRGGQEIYVGP 1051
G+T+V H DI EA D + ++ G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 849 AFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR--ISGYCE 906
F G +TA++G +G+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 907 QNDIHSPQVTVYES--LLYSAWLRLSPE----VDSKTRKMFIEEVMELVELNLLRQALVG 960
+N++ +TV ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1017
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRG 1043
TV+ HQP D + L G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L VS + G + A++G +G+GK+TL+ +L G +G + +G + + +
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERA 78
Query: 903 -------GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
G+ Q P T E++ + ++K R E++E V L
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL---E 132
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRNT 1012
+ P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 133 HRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 1013 VDTGRTVV 1020
++T VV
Sbjct: 191 LNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQETFA 899
L+ + S +PG AL+G +G+GK+T+ ++AG Y +G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSGEILFDGIPREEIPRE 549
Query: 900 RISG---YCEQNDIHSPQVTVYESLLYSAWLRLSPEVD--SKTRKMFIEEVMELVELNLL 954
++ +Q DI + TV ++L + W P+ D + I +V+
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGY- 605
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1014
A + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 606 -DAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--- 660
Query: 1015 TGRTVVCTI--HQPSIDIFEAFDELFLLKRG 1043
R C I H+ S I + DE+ +L+RG
Sbjct: 661 --RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 63/263 (23%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHN---M 220
LK +S I G +T L+GP GK+TLL L L G V +G + +
Sbjct: 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72
Query: 221 DEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
D V + R + Q ++ + +A+ R G+ + EL R + A
Sbjct: 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA---- 123
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM-----IRGISGGQRKRV 333
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -------------------------LRKAALW--------DEVKDRLHALGLSGGQQQRL 150
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI---SLLQPAPEAY 390
L + +DE ++ LD +T +I + + T +I ++ Q A
Sbjct: 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQ----AA 204
Query: 391 DLFDDIILISDGQIVYQGPREHV 413
+ D + +G++V GP E +
Sbjct: 205 RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 51/267 (19%)
Query: 155 SLNILSSRKKHIT--ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGR 212
S+ + S K + T L VS + GR+ LGP +GK+T + + G L G
Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGS 58
Query: 213 VTYNGHNM--DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
V G ++ + QR Y+ +H+ +M VRE L F A G
Sbjct: 59 VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG-------------- 104
Query: 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQR 330
MK + + ++ +++GL +G +S G R
Sbjct: 105 ---------------MKGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYR 139
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFI-HILRGTTLISLLQPAPEA 389
+RV + L+ + +DE +TGLD + Q+V +R I +I + T+I E
Sbjct: 140 QRVGLAQALIHDPKVLILDEPTTGLDPN---QLV-EIRNVIKNIGKDKTIILSTHIMQEV 195
Query: 390 YDLFDDIILISDGQIVYQGPREHVLEF 416
+ D +I+I+ G+IV + +
Sbjct: 196 EAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 857 ALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS---GYCEQN---DI 910
A++G GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970
SP TV + + + ++ +D +T + + ++ L LR + P + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1029
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1030 IFEAFDELFLLKRGG-------QEIYVGPLGRHSSHL 1059
+ E D ++++ +G +EI++ P HL
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL 237
|
Length = 277 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
+ +SGGQR+RV L+ +DE ++GLD ++ +++ LR+ G T+I
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 381 SLLQPAPEAYDLFDDIILISDGQ 403
+ A D +I++ DG+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 45/251 (17%)
Query: 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHN---M 220
+LK +S I PG ++GP SGK+TL+ L D + G + +G + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDI 396
Query: 221 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
++ +SQ D + T+RE +A +PD
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIALG-------------------------RPDA 430
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+ +A + + ++I L DT+VG E +SGGQR+R+ L+
Sbjct: 431 TDEEIEEAL-----KLANAHEFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400
+DE ++ LD+ T I ++L++ + TTLI + + D II++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 401 DGQIVYQGPRE 411
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-09
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
LK + + G +LG SGK+TLL LAG D G +T NG + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 227 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
T + ++Q VH+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+ AA + + + +T +G E R +SGG+R+R+ L+ A
Sbjct: 442 EELWAAL----QQVGLEKLLE---SAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ +DE + GLD T Q++ L + G TL+ + + D II++ +G+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE---HAEGKTLLMVTHRLRGL-ERMDRIIVLDNGK 549
Query: 404 IVYQGPREHVLE 415
I+ +G +L
Sbjct: 550 IIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 42/223 (18%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGR--KTTGYVTGNITISGYPK--------KQ 895
VS PG + ++G +G+GKTTL+ ++GR G VT G P+ ++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT-YRMRDGQPRDLYTMSEAER 83
Query: 896 ETFARIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFI------------ 942
R G+ QN ++ V S + R M I
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQV------------SAGGNIGERLMAIGARHYGNIRAEA 131
Query: 943 EEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
++ +E VE++L R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 132 QDWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 187
Query: 1003 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044
A ++ +R V + G VV H ++ A D L ++K+G
Sbjct: 188 ARLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-09
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG--YPKKQETFAR 900
L SV+ PG + AL+G GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAA 78
Query: 901 ISG----YCEQNDIHSPQVTVYESLLYSAWLRLS-------PEVDSKTRKMFIEEVMELV 949
G Y E + I ++TV E+L R +D + ++ ++ V
Sbjct: 79 QLGIGIIYQELSVID--ELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
L + V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 8e-09
Identities = 62/279 (22%), Positives = 100/279 (35%), Gaps = 77/279 (27%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
ILKGV+ ++ G + ++GP SGK+TL + G Y G + ++G +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-----YEVTEGEILFDGED---- 69
Query: 224 VPQRTAAYISQHDVHIGEMTVRE------TLAFS--ARCQGVGSRYEMLTELARREKAAG 275
I E++ E LAF GV A +
Sbjct: 70 ---------------ILELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGA 112
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR-----GISGGQR 330
P+ +K A ++LGLD +E + G SGG++
Sbjct: 113 RGILPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEK 150
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY 390
KR ++L+ + +DE +GLD + + RG +I+ Q
Sbjct: 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ------ 204
Query: 391 DLFDDII-----LISDGQIVYQGPREHVLEFFEFMGFKC 424
L D I ++ DG+IV G E + E E G+
Sbjct: 205 RLLDYIKPDKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY-----------PKKQETFAR 900
G+ TAL G +G+GKT+L++++AG T G I ++G P ++ R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAG--LTRPDEGRIELNGRVLVDAEKGIFLPPEKR---R 77
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
I GY Q+ P TV +L Y W K+ + ++++ L+ + L L
Sbjct: 78 I-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDR 124
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 125 YPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 57/250 (22%), Positives = 90/250 (36%), Gaps = 62/250 (24%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM----DE-- 222
+ GV+ +R G + LGP +GKTT + L L + G G+++ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 223 ----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
VPQ + ++T RE L R G L + E+A
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAE---- 106
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+L++ L D + SGG R+R+
Sbjct: 107 -----------------------ELLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
L+ F+DE +TGLD T I + +R G T++ EA L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAI 196
Query: 399 ISDGQIVYQG 408
I G+I+ +G
Sbjct: 197 IDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 58/264 (21%), Positives = 94/264 (35%), Gaps = 52/264 (19%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
K L VS I G ++G SGK+TL LAG S G + +G +
Sbjct: 15 GGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPL 71
Query: 221 DEFVPQRTAA----YISQH---DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
+ + Q ++ TV L+ R G+ + + EL +
Sbjct: 72 APKKRAKAFYRPVQMVFQDPYSSLN-PRRTVGRILSEPLRPHGLSKSQQRIAELLDQ--- 127
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
G+ P S + + +SGGQR+R+
Sbjct: 128 VGLPP------------------SFLDRRPHE-------------------LSGGQRQRI 150
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393
L+ + +DE ++ LD S QI+N L + + RG T + + +
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-LKKERGLTYLFISHDLALVEHMC 209
Query: 394 DDIILISDGQIVYQGPREHVLEFF 417
D I ++ +GQIV GP E +L
Sbjct: 210 DRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 48/254 (18%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
+L VS I G +T ++GP +GK+TLL ++ K DS G +T +G +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS-----GEITIDGLELTSTP 69
Query: 225 PQRTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ A +S Q + +TVR+ + F R+
Sbjct: 70 SKELAKKLSILKQENHINSRLTVRDLVGF--------GRFP------------------- 102
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
+ + T+ E + + ++ L L + D + +SGGQR+R +L
Sbjct: 103 ---YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRAFIAMVLAQ 152
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401
+DE LD + QI+ LR+ L G T++ +L A D I+ + +
Sbjct: 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKN 211
Query: 402 GQIVYQGPREHVLE 415
G++V QG + +++
Sbjct: 212 GKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 65/213 (30%), Positives = 95/213 (44%), Gaps = 38/213 (17%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAG--RKTTG---YVTGNITISGYPKKQETFARISGYCE 906
PG + AL+G GAGK+T+M VL G + G Y+ +T +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 907 QNDIHS-----PQVTVYESLLY-----SAWLRLSPEVDSKTRKMFIEEVMELVELNLLR- 955
IH PQ+T+ E++ + + R+ +KM+ E L LNL
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKLLARLNLRFS 134
Query: 956 -QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1014
LVG LS +++ + IA L +I MDEPT L + R +R
Sbjct: 135 SDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS 189
Query: 1015 TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047
GR +V H+ +IFE D++ + R GQ I
Sbjct: 190 QGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-08
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 48/274 (17%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF- 223
+L +S I G+M LLGP SGKTTLL +AG + G + ++G ++
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 224 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
R ++ QH MTV + +AF LT L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+KA T+ +L+++ L AD +SGGQ++RV L
Sbjct: 112 A-IKAKVTQ----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
Q +DE LD+ ++ LRQ L+ T++ + EA ++ D ++++S G
Sbjct: 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGN 214
Query: 404 IVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437
I G + V ++ P + V +F+ EV
Sbjct: 215 IEQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 30/224 (13%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-YPKKQETF 898
LV LN++S F + ++G +G+GK+TL+ G + Y G I + Y ++
Sbjct: 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNN 96
Query: 899 ARISGYCEQNDIHS--------------PQV-----TVYESLLYSAWLRLSPEVDSKTRK 939
+ I + P+ T+ + +++ + ++K
Sbjct: 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA 156
Query: 940 MFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
F M L + L R GLS Q++R+ IA L P I+ DEPT+GLD
Sbjct: 157 KFYLNKMGLDDSYLERSPF-------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
Query: 1000 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ +M+ + + +TV H + E DE+ ++ +G
Sbjct: 210 KGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
+TF Y D P +LDD VS PG A++G +G+GK+TL+ +L
Sbjct: 456 RVTF---RYRPDGPL------ILDD-------VSLQIEPGEFVAIVGPSGSGKSTLLRLL 499
Query: 874 AGRKTTGYVTGNITISGYPKK---QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
G +T +G++ G + R G QN +++E++ A L+
Sbjct: 500 LGFETPE--SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA--PLT 554
Query: 931 PEVDSKTRKMFIEEVMELVELNLLRQALVGLP---------GVNGLSTEQRKRLTIAVEL 981
+ E E + L + + +P G LS QR+RL IA L
Sbjct: 555 LD-----------EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603
Query: 982 VANPSIIFMDEPTSGLDARAAAIVM 1006
V P I+ DE TS LD R AIV
Sbjct: 604 VRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 2e-08
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
T+L +S I G + +LGP +GK+TLL LAG K S G + +G ++
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS-----GEILLDGKDLASLS 67
Query: 225 PQ---RTAAYISQ 234
P+ R AY+ Q
Sbjct: 68 PKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLL-LALAGKLDSSLRLYGRVTYNGHNMDEFV 224
L G++ I G L+GP +GK+TLL L +L +S G + NG ++ +
Sbjct: 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDL- 68
Query: 225 PQRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
R Y+ + IG + V E +AF+ GV R E+ +R AA
Sbjct: 69 RGRAIPYLRR---KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA 120
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
L+++GL + +SGG+++RV
Sbjct: 121 -----------------------------LELVGLSHKHRALPA-----ELSGGEQQRVA 146
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394
+V DE + LD TT++I+N L++ GTT++ A A +L D
Sbjct: 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI--NKAGTTVVV----ATHAKELVD 200
Query: 395 D----IILISDGQI 404
+I + G++
Sbjct: 201 TTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQE 896
L +L V + G A++G +G+GK+TL+ VLAG +G + + G P ++
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDED 80
Query: 897 TFARIS----GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN 952
A + G+ Q+ P +T E++ LR DS+ L+E
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG------AKALLEAV 134
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRT 1008
L + L P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 135 GLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL 192
Query: 1009 VRNTVDTGRTVVCTIHQPSI 1028
R + G T+V H P +
Sbjct: 193 NR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQE 896
D LVL + VS PG +TAL+G +G+GK+T++ +L + G G + + G P
Sbjct: 26 DTLVLQD-VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKP---- 77
Query: 897 TFARISGYCEQNDIHSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIEEVMELV------ 949
IS Y E +HS V E +L++ L+ + ++ E V E
Sbjct: 78 ----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHAH 130
Query: 950 ----ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
EL VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA + V
Sbjct: 131 SFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 1006 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ + + RTV+ H+ + E D++ +L G
Sbjct: 190 QQALYDW-PERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVT-GNITISGYPKK 894
L +++ +TAL+G +G GK+TL+ D++ G + G V I
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
R G Q P ++Y+++ Y P + K ++E++E L
Sbjct: 77 VVELRRRVGMVFQKPNPFPM-SIYDNIAYG------PRLHGIKDKKELDEIVE----ESL 125
Query: 955 RQALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
++A L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 126 KKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 34/201 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY--VTGNITISGYPKKQ---ET 897
L++VS RPG A++G G+GK+TL+ +L G Y G++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL----NL 953
R GY Q D T+ +++ A P D EE++ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADD-------EEILRAAELAGVTEF 583
Query: 954 LRQ------ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
+R+ +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1008 TVRNTVDTGRTVVCTIHQPSI 1028
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 73/276 (26%)
Query: 150 EGLLNSLNILSSRK-KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR 208
GL+ SL L RK + + LKG+S I G + +GP +GKTT L L+G L +
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 209 LYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT-------VRETLAFSARCQGV--- 257
G V G VP +R ++ + V G+ T V ++ A +
Sbjct: 75 -SGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 258 --GSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315
R + L+EL LD + ++L
Sbjct: 129 RFKKRLDELSEL--------------LD-------------------LEELL-------- 147
Query: 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL- 374
D +R +S GQR R L+ + F+DE + GLD ++R F+
Sbjct: 148 ---DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ----ENIRNFLKEYN 200
Query: 375 --RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
RGTT++ + L +++I G+++Y G
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 24/163 (14%)
Query: 855 LTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNIT-ISGYPKKQETFARISGYCE 906
+TAL+G +G GK+TL+ D++ G + TG + N I R G
Sbjct: 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVF 93
Query: 907 QNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVM------ELVELNLLRQALVG 960
Q P+ ++YE++ Y R+ E + KT +E+ + + V+ L AL
Sbjct: 94 QRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL-- 148
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 149 -----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 54/221 (24%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE----- 222
+LKG++ G + LLG +GK+TLLL L G L G V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 223 FVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
++ + Q D + V + +AF G+
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL------------------------ 99
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
E L +G + +SGG++KRV +
Sbjct: 100 ----------SEAEVERRVREALTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTTLI 380
+DE + GLD + Q+ + LR G T++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQM----LAILRRLRAEGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 46/220 (20%), Positives = 71/220 (32%), Gaps = 55/220 (25%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG- 217
L+ + + +G+S + G + GP GKTTLL LAG L G V +NG
Sbjct: 6 LACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGT 62
Query: 218 -HNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
P R Y+ E++ E L F A G
Sbjct: 63 ALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-------------------- 102
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
+ +A L +GL D +S GQ++R+
Sbjct: 103 --GAQRTIE---------DA-------LAAVGLTGFEDLPAAQ-----LSAGQQRRLALA 139
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376
+ + A + +DE +T LD + +LR
Sbjct: 140 RLWLSRAPLWILDEPTTALD-------KAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 63/294 (21%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHN 219
+T L VS I G + ++G +GK+TLL + + S G V +G +
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS-----GSVFVDGQD 69
Query: 220 MDEF--VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
+ R I QH + TV E +AF ELA KA
Sbjct: 70 LTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP-------------LELAGVPKA 116
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
+K E +L+++GL AD +SGGQ++RV
Sbjct: 117 E-----------IKQRVAE----------LLELVGLSDKADR-----YPAQLSGGQKQRV 150
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY-DL 392
L + DE ++ LD TT I+ L+ I+ G T I L+ E +
Sbjct: 151 AIARALANNPKILLCDEATSALDPETTQSILELLKD-INRELGLT-IVLITHEMEVVKRI 208
Query: 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQY 446
D + ++ G++V +G V F P+ +F+ E E+
Sbjct: 209 CDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 26/183 (14%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIH 911
G L L+G GAGKTTL+ + G G + ++G + R GY Q H
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKGW--RHIGYVPQR--H 58
Query: 912 S-----PQVTVYESLLYS-----AWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
P ++V +++ WLR D + + + V L L VG
Sbjct: 59 EFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1021
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1022 TIH 1024
T H
Sbjct: 169 TTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 57/260 (21%)
Query: 155 SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRLYGR 212
+ ++ R +T L +S + G + LLGP +GKTT + + G + DS G
Sbjct: 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS-----GE 56
Query: 213 VTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREK 272
V ++G +D + Y+ + +M V + L + A+ +G+ ARR
Sbjct: 57 VLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR- 108
Query: 273 AAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKR 332
D L+ L L A ++ + +S G +++
Sbjct: 109 ---------------------------IDEWLERLELSEYA-----NKRVEELSKGNQQK 136
Query: 333 VTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNS--LRQFIHILR--GTTLISLLQPAPE 388
V ++ + +DE +GLD VN L+ I L G T+I
Sbjct: 137 VQFIAAVIHDPELLILDEPFSGLDP------VNVELLKDVIRELARAGKTVILSTHQMEL 190
Query: 389 AYDLFDDIILISDGQIVYQG 408
+L D ++L++ G+ V G
Sbjct: 191 VEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTL-------MDVLAGRKTTGYVTGNITISGYPKK 894
+L V +PG + G TG+GK++L +D+ G+ V I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
+R+S + + + +L+S +R + + + K + E +E+ +L +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 955 RQALVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
++L G G++ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ V T RTVV H+ S I +A D + +L RG
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---- 892
+ L +L V + G AL+G +G+GK+TL+ +LAG +G +++ G P
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQM 77
Query: 893 ---KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949
+ + A+ G+ Q+ + P + E++ A LR S+ L+
Sbjct: 78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR------NGAKALL 131
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 132 EQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-08
Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 32/229 (13%)
Query: 834 GVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTT----LMDVL--AGRKTTGYVT-GNI 886
R+ + VS PG + ++G +G+GK+T LM +L GR T+G V
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 887 TISGYPKKQET--FARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFI 942
+ G +++ + Q+ + S P +T+ + + + L +R
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEAR 130
Query: 943 EEVMELVELNLLRQALVGLPGVNG-------LSTEQRKRLTIAVELVANPSIIFMDEPTS 995
+ +EL+E VGLP LS R+R+ IA+ L P ++ DEPT+
Sbjct: 131 KRAVELLEQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 996 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
LD A ++ +++ + G V+ H + + E D + ++ +G
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 24/209 (11%)
Query: 826 MPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT 883
M E+K G L +LN++S + R G A+ G +G GK+TL+ ++A T+G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 884 --GNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMF 941
G +S K E + + YC Q TV ++L++ W + D
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFGD-TVEDNLIF-PWQIRNRRPDRAAALDL 116
Query: 942 IEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
+ L + L + + LS +++R+ + L P I+ +DE TS LD
Sbjct: 117 LARF-ALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1002 A----AIVMRTVRNTVDTGRTVVCTIHQP 1026
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 37/198 (18%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L ++S + +PG ++G TG+GK++L +LA + +G+I I G ++I
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD-----ISKIG 72
Query: 903 GYCEQNDIHS-----PQVTVYESLLYSAWLR--LSPEVDSKTRKMFIEEVMELVELNLLR 955
+D+ S PQ + +L+S +R L P + EE+ + +E L+
Sbjct: 73 ----LHDLRSRISIIPQ----DPVLFSGTIRSNLDPF-GEYSD----EELWQALERVGLK 119
Query: 956 QALVGLPG-------VNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
+ + LPG G LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 1007 RTVRNTVDTGRTVVCTIH 1024
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 60/276 (21%), Positives = 103/276 (37%), Gaps = 68/276 (24%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY--GRVTYNGHN 219
+ + GVS ++ G + ++G SGK+ L A+ G L G + ++G +
Sbjct: 14 DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73
Query: 220 MDEFVPQRTA-------AYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
+ + A I Q + V MT+ + +A R G G + E
Sbjct: 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPV----MTIGDQIAEVLRLHGKGLSKKEAKE 129
Query: 267 LARRE-KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325
A + GI PDP+ LK E+
Sbjct: 130 RAIELLELVGI-PDPER--------------------RLK----------SYPHEL---- 154
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI----- 380
SGG R+RV L + DE +T LD + QI++ L++ + +GT LI
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALILITHD 213
Query: 381 -SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
+ ++ D + ++ G+IV +GP E + +
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 59/265 (22%), Positives = 101/265 (38%), Gaps = 53/265 (20%)
Query: 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTY 215
+ +T LK VS + G + ++G +GK+TL+ + G + S G V
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS-----GSVLV 64
Query: 216 NGHNMDEFVP------QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
+G ++ +R I QH + TV E +A E+A
Sbjct: 65 DGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAG 111
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329
KA ++ E +L+++GL D D +SGGQ
Sbjct: 112 VPKA-----------EIEERVLE----------LLELVGL---EDK--ADAYPAQLSGGQ 145
Query: 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389
++RV L + DE ++ LD TT I+ LR I+ G T++ +
Sbjct: 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD-INRELGLTIVLITHEMEVV 204
Query: 390 YDLFDDIILISDGQIVYQGPREHVL 414
+ D + ++ G++V +G E V
Sbjct: 205 KRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-08
Identities = 67/253 (26%), Positives = 102/253 (40%), Gaps = 51/253 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
+L ++ I+PG ++GP SGK+TL L RLY PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-------RLY-------------TPQH 511
Query: 228 TAAYISQHDVHIGE-MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
+ D+ I + +R R GV + +L + R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346
AA G I L +T VG E +SGGQR+R+ LVG +
Sbjct: 565 HAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 347 FMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL-----FDDIILISD 401
DE ++ LD + I+ ++R+ I RG T+I + A+ L D II++
Sbjct: 616 IFDEATSALDYESEALIMRNMRE---ICRGRTVIII------AHRLSTVRACDRIIVLEK 666
Query: 402 GQIVYQGPREHVL 414
GQI G E +L
Sbjct: 667 GQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 44/235 (18%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQ 234
+ G + +LGP +GK+TLL +AG + G + NG + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
+ +TV + + G+ P L+ E +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPGLKLN-------AEQR 107
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
E + +GL + +SGGQR+RV LV +DE +
Sbjct: 108 EK---VEAAAAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409
LD + +++ + Q + R TL+ + +A + D ++ + +G+I QG
Sbjct: 160 LDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 52/252 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL------DSSLRLYGRVTYNGHNMD 221
L +S I G T L+G SGK+T+ + G L +S + + G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 222 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ + ++ D TV + +AF + V R EM+ I D
Sbjct: 81 D-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVL 128
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT-TGEMLV 340
DV M DYI D +SGGQ++RV G + V
Sbjct: 129 ADVGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400
P + +DE ++ LD + QI+ +R+ + T+IS+ EA ++ D ++++
Sbjct: 161 EP-KIIILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLD 217
Query: 401 DGQIVYQG-PRE 411
DG+++ QG P E
Sbjct: 218 DGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVL-------AGRKTTGYVTG-NITISGYPKK 894
+N A G + +MG++G+GK+T + +L AG+ ++ G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
+E + G Q P +T+ ++ L PE + K + L LL
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA-----------LELL 114
Query: 955 RQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
+ LVGL + LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 115 K--LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1010 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
+ T +T+V H D+ EA D + ++K G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 31/175 (17%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP-------KK 894
+L++VS + G + A++G +G+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIEEVMELVELN 952
E + G+ Q P T E++ + E++S+ +M
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEML----------- 130
Query: 953 LLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
A VGL + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ----AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 59/269 (21%), Positives = 103/269 (38%), Gaps = 47/269 (17%)
Query: 154 NSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYG 211
+NI K+ + K V+ ++ G + L+GP GKTT L A+ L R+ G
Sbjct: 8 QDVNIYYGDKQAV---KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64
Query: 212 RVTYNGHNM-----DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
R+ +G ++ D +R + Q M+V + + + G+ R + L E
Sbjct: 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLME 123
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326
+A R D D +K AT G+S
Sbjct: 124 VAERSLRGAALWDEVKDR-LKTPAT--------------------------------GLS 150
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPA 386
GGQ++R+ L + MDE ++ LD ++T +I + + + TT+I +
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNM 207
Query: 387 PEAYDLFDDIILISDGQIVYQGPREHVLE 415
+A + D G +V GP + +
Sbjct: 208 HQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 28/232 (12%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY---PK 893
D R +LN +S G A++G +GAGK+T++ +L R +G+ITI G
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDV 330
Query: 894 KQETFARISGYCEQ-----NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME- 947
Q++ R G Q ND T+ ++ Y + EV + I + ++
Sbjct: 331 TQQSLRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS 384
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
L E GL LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 385 LPEGYDTGVGERGLK----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440
Query: 1008 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHL 1059
+R V GRT + H+ S I +A DE+ +L G + G H L
Sbjct: 441 ALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
VS PG + ++G +G+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFI------------EEVMELVEL 951
+ + + V+++ +R+S + R M I ++ +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
+ R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 1012 TV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
V D G V+ H + A L ++++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L +S + G TAL+G GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 903 G-----YCEQNDIHSPQV---TVYESLLYSAW-LRLSP-EVDSKTRKMFIEEVMELVELN 952
+ + +D QV TV++ + + + L EV+ + EE ++ V +
Sbjct: 79 SKVGLVFQDPDD----QVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMW 129
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
R LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 130 DFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1013 VDTGRTVVCTIH 1024
+ G+TV+ H
Sbjct: 185 HNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 16/180 (8%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP------ 892
R +L +VS + G L+G +G GK+TL +L G + G ++ G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDR 80
Query: 893 KKQETFARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
K++ F R Q+ + P++TV + + LR +D +K I E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
L + LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 48/252 (19%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
IL+G++ +RPG + ++GP SGK+TL LAG+ D + G V + G ++ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 227 RTAAYISQHDVHIGEMTVRETLAFS--ARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
A GE +AF GV +++ + T L G +P LD
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDR 117
Query: 285 FMKAAATEGQEASVVTDYI-LKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
F D + KI L + D + + G SGG++KR +M V
Sbjct: 118 FD------------FQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEP 164
Query: 344 QAFFMDEISTGLDS---STTFQIVNSL----RQFIHILRGTTLISLLQPAPEAYDLFDDI 396
+ +DE +GLD VNSL R FI + ++ ++P D +
Sbjct: 165 ELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKP--------DYV 216
Query: 397 ILISDGQIVYQG 408
++ G+IV G
Sbjct: 217 HVLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYN 216
+S R T+L VS I G + LLGP SGK+TLL +AG + DS L
Sbjct: 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65
Query: 217 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAF 250
+ +R + Q +TV E +A
Sbjct: 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 64/253 (25%), Positives = 96/253 (37%), Gaps = 55/253 (21%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
++ +S I G LLGP +GK+T+ L G + G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITV----LGEPVPSR 71
Query: 228 TAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ Q D E TVRE L R G+ +R
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR--------------------- 110
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
E V +L+ L+ AD V +SGG ++R+T L+
Sbjct: 111 -------------EIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401
Q +DE +TGLD I LR + RG T++ EA L D + ++
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSL--LARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 402 GQIVYQGPREHVL 414
G+ + +G R H L
Sbjct: 211 GRKIAEG-RPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 48/217 (22%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFA 899
L ++ G L A++G G+GK++L+ L G K +G V+ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 900 RISGYCEQ-----NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME------- 947
Y Q N T+ E++L+ D + E+V++
Sbjct: 70 ----YVSQEPWIQNG------TIRENILFGK------PFD----EERYEKVIKACALEPD 109
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVM 1006
L L +G G+N LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 110 LEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 1007 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ + +T + HQ + + D++ +L G
Sbjct: 169 NCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 858 LMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFARISGYCEQNDIHSPQ 914
L+G +G GKTTL+ +LAG + +G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974
+TV E++ + +R +V K + E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 975 LTIAVELVANPSIIFMDEPTSGLDAR 1000
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 37/204 (18%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY------P 892
++ L VS + G + ++G +GAGK+TL+ + G + +G++ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 893 KKQETFARISGYCEQ--NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELV 949
K+ R G Q N + S TV+E++ L ++ K IEE V+EL+
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIA-----GVPKAEIEERVLELL 125
Query: 950 ELNLLRQALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
EL VGL P LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 126 EL-------VGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1003 AIVMRTVRNT-VDTGRTVVCTIHQ 1025
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 35/170 (20%)
Query: 856 TALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YPKKQ---ETFARIS 902
TA +G +G GK+T + D + G + VTG IT+ G Y + E AR+
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYDPRLDVVELRARV- 102
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL---- 958
G Q P+ ++YE++ Y R+ SK E+ E+VE +L + L
Sbjct: 103 GMVFQKPNPFPK-SIYENVAYGP--RIHGLARSKA------ELDEIVETSLRKAGLWEEV 153
Query: 959 ---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
+ PG GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 154 KDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 60/279 (21%), Positives = 113/279 (40%), Gaps = 40/279 (14%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTL---LLALAGKLDSSLRLYGRVTYNGH 218
R +T+L G++ + G L+GP SGK+T+ L+ L + +++ G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 219 NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+P R + + H+ +M +G ++ + +
Sbjct: 67 -----MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTE 110
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
P L + M A E + +L ++GL AD D M +SGGQ++RV
Sbjct: 111 APVLVLGMARAEAEKRAME-----LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARA 160
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
L + DE+++ LD +++N +R+ T L+ + A + D +
Sbjct: 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCF 219
Query: 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437
G+IV QG + + F+ P+ + +FL +V
Sbjct: 220 FDKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 31/198 (15%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS--- 902
VS PG + ++G +G+GKTTL++ L+ R G + + +S
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEAE 82
Query: 903 ---------GYCEQN--DIHSPQVT----VYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
G+ Q+ D QV+ + E L+ R ++ + + +E
Sbjct: 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDIRATA-----GDWLE 136
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
VE++ R + LP S ++RL IA LV +P ++FMDEPT GLD A ++
Sbjct: 137 RVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1008 TVRNTV-DTGRTVVCTIH 1024
+R V + G VV H
Sbjct: 193 LLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 45/264 (17%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
T+ + ++ I G T ++GP GK+TLL L+ + + +G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASK 77
Query: 227 RTAAYI---SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA--------RGRYPHQPLFTRWRKE-----DEE-- 122
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
A T+ +A+ +T + D+ + +SGGQR+R +L
Sbjct: 123 -----AVTKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+DE +T LD S ++ L + ++ +G TL ++L +A +I + +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 404 IVYQG-PREHVL-EFFE-FMGFKC 424
IV QG P+E V E E G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 855 LTALMGVTGAGKTTLM-------DVLAGRKTTGYVT-------GNITISGYPKKQETFAR 900
+TAL+G +G GK+TL+ D++ G K TG +T GNI ++ R
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL--------R 82
Query: 901 IS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
I G Q P +++YE++ Y LR D K +E + L + +
Sbjct: 83 IKVGMVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL 139
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 140 KSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG--YPKKQETFAR 900
L + + G + ++G +G+GK+TL+ + + +G I I G ++
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINE 73
Query: 901 IS---GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
+ G Q P +TV E++ L+P K + M E E LL +
Sbjct: 74 LRQKVGMVFQQFNLFPHLTVLENIT------LAP---IKVKGMSKAEAEERAL-ELLEK- 122
Query: 958 LVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ +++
Sbjct: 123 -VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181
Query: 1013 VDTGRTVVCTIHQ 1025
+ G T+V H+
Sbjct: 182 AEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 60/224 (26%), Positives = 93/224 (41%), Gaps = 28/224 (12%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY------VTGNITISGYPKK 894
+L +S PG +TAL+G GAGK+TL+ LAG T G VTG++T++G P
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAW--LRLSPEVDSKTRKMFIEEVMELV 949
AR+ Q + + E +L + R + + + ++ + + L
Sbjct: 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AWQALALA 133
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTSGLDAR 1000
ALVG V LS + R+ A L P + +DEPT+ LD
Sbjct: 134 GAT----ALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 1001 AAAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELFLLKRG 1043
++ TVR V I H P++ A D + +L G
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADG 231
|
Length = 272 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 56/275 (20%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
+S R + + V+ I G +L+GP SGKTT L + ++ + G + +G
Sbjct: 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGE 63
Query: 219 ---NMDEFVPQRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYEMLTELARREK 272
++D +R Y+ Q IG +TV E +A + G R +K
Sbjct: 64 DISDLDPVELRRKIGYVIQQ---IGLFPHLTVAENIATVPKLLGWDK--------ERIKK 112
Query: 273 AAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKR 332
A D +L ++GLD D +SGGQ++R
Sbjct: 113 RA--------------------------DELLDLVGLDPSE---YADRYPHELSGGQQQR 143
Query: 333 VTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392
V L MDE LD T Q+ +++ + G T++ + EA L
Sbjct: 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE-LQKELGKTIVFVTHDIDEALKL 202
Query: 393 FDDIILISDGQIVYQGPREHVL-----EFFE-FMG 421
D I ++ G+IV + +L +F E F G
Sbjct: 203 ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFG 237
|
Length = 309 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 849 AFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR--ISGYCE 906
G + A++G +GAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 907 QNDIHSPQVTVYES--LLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG---- 960
+N++ + +TV ++ L S L+L+ E E VE + L G
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLN------------AEQREKVEAAAAQVGLAGFLKR 125
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 1016
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052
T++ H P D D + L G+ G
Sbjct: 181 MTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 43/202 (21%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-------------------- 890
RPG + A+MG G+GK+TL LAGR+ G + G
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 891 -YPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949
YP I G Q + + V R +D + +EE + L+
Sbjct: 85 QYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDRFDFQDLMEEKIALL 131
Query: 950 EL--NLLRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1006
++ +LL ++ VN G S ++KR I V P + +DE SGLD A IV
Sbjct: 132 KMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 1007 RTVRNTVDTGRTVVCTIHQPSI 1028
V + D R+ + H I
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-07
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ET 897
L ++ G AL+G +GAGKT+L++ L G Y G++ I+G ++ E+
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG--FLPY-QGSLKINGIELRELDPES 420
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
+ + + QN P T+ +++L P+ E++ + +E + +
Sbjct: 421 WRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASD-------EQLQQALENAWVSEF 467
Query: 958 LVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ N +T + HQ ++ +D++++++ G
Sbjct: 528 L-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK--KQETFAR 900
L++V+ RP + ALMG GAGK+TL+ L G +G+I G K A
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEAL 71
Query: 901 ISG----YCEQNDIHSPQVTVYESLLYSAWLRLSPE----VDSKTRKMFIEEVMELVELN 952
+G + E N + Q +V +++ WL P VD KM+ + EL+
Sbjct: 72 ENGISMVHQELNLVL--QRSVMDNM----WLGRYPTKGMFVDQD--KMYRDTKAIFDELD 123
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
+ V LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 124 IDIDPRAK---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180
Query: 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052
+ G +V H+ +IF+ DE+ +L R GQ I PL
Sbjct: 181 KERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 854 VLTALMGVTGAGKTTLM---DVLAGRKTTGYVTGNITISG---YPKKQETFA--RISGYC 905
+ ALMG +G GK+TL+ + L V G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL------- 958
Q P +T+Y+++ + ++L+ V SK +E+ E VE L + AL
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 959 -VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1018 TVVCTIHQPS----IDIFEAFDELFLLKRGGQEIYVGP 1051
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
T L+ +S + G L+GP GK+TLL +AG + S G V +G +
Sbjct: 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS-----GEVLVDGEPVTG-- 70
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 71 PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAE 113
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 850 FRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET---FARIS-GYC 905
F +TA +G GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965
Q++I +TV E +L+ A L+ +++ + +E ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQ---LEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 1022
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 1023 IHQ 1025
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 53/223 (23%), Positives = 77/223 (34%), Gaps = 57/223 (25%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP- 225
+ G+S + G + GP SGKTTLL LAG S L GRV NG +D
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRDS 70
Query: 226 -QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
R Y+ ++V E L F S ++ LAR
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR--------------- 112
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
+GL D + +S GQ++RV +L+
Sbjct: 113 ----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGRP 145
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-----TTLISL 382
+ +DE +T LD + + ++ H RG TT L
Sbjct: 146 LWILDEPTTALDKAGVARFAEAMAG--HCARGGMVVLTTHQDL 186
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 79/332 (23%), Positives = 129/332 (38%), Gaps = 77/332 (23%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
+ LK V+ + PG + LLG +GK+TL+ L+G + + G +T N N ++
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDH 74
Query: 226 QRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ A I Q I E+TV E L + R LT +K G+
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NI 116
Query: 282 LD-VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+D M+ A +L +GL V D V + +S ++ + + L+
Sbjct: 117 IDWREMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 341 GPAQAFFMDEISTGLDSSTT---FQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
A+ MDE ++ L + F I+N LR+ GT ++ + E + D
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYT 216
Query: 398 LISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEE----- 452
++ DG V G V D ++ + R+ Q ++ A KE
Sbjct: 217 VMKDGSSVCSGMVSDV---------------SNDDIVRLMVGRELQNRFNAMKENVSNLA 261
Query: 453 -----PYRFVTVKEFADAFQ-SFSV--GQILG 476
R VT ++ SFSV G+ILG
Sbjct: 262 HETVFEVRNVTSRDRKKVRDISFSVCRGEILG 293
|
Length = 510 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
LL +S G L L G GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 902 SGYC---EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
C ++ I +P +T+ E+ LY ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1019 VVCTIHQ 1025
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 66/284 (23%), Positives = 109/284 (38%), Gaps = 38/284 (13%)
Query: 774 FLNWSADDIRRRDSSSQSLETITEA----NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQE 829
+W A + R Q+LE + RR H +T ++++
Sbjct: 349 IADWRAT-LLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR------ 401
Query: 830 MKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITIS 889
D LL+ ++ RPG + G +GAGKT+L+ LAG + +G I
Sbjct: 402 ------TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI--- 450
Query: 890 GYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949
P + Q + PQ T+ E+L Y P + V+ V
Sbjct: 451 SMPADSALL-----FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKV 497
Query: 950 ELNLLRQALVGL-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
L L + L LS +++RL A L+ P +F+DE TS LD + +
Sbjct: 498 GLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL 557
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052
++ + TV+ H+P++ F + +L LL G + P
Sbjct: 558 LKEEL-PDATVISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG----YPKKQETF 898
L +S + G + ++G +G+GK+TL+ L G + +G+IT+ G K
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKL 75
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R G Q P +TV E++ L+P K +K+ E E L LL +
Sbjct: 76 RRKVGMVFQQFNLFPHLTVLENVT------LAPV---KVKKLSKAEAREKA-LELLEK-- 123
Query: 959 VGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
VGL LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183
Query: 1014 DTGRTVVCTIHQ 1025
+ G T++ H+
Sbjct: 184 EEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 44/182 (24%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQH 235
+ G L+ G +GKTTLL LAG L G++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD-LDVFMKAAATEGQ 294
H+ G+K D L+ G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
A + L I+GL DT+V R +S GQ+KR+ + + PA + +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 355 LD 356
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 60/258 (23%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ- 226
ILKG+S ++ G ++GP SGK+TL L G G V +G ++ ++ +
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQ 407
Query: 227 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
R Y+ Q DV + + T+ E +A R+ + D +
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA----------RFG---------------EEADPEK 441
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
++AA + V + IL+ L DT +G+ +SGGQR+R + A+
Sbjct: 442 VIEAA-----RLAGVHELILR---LPQGYDTRIGEGG-ATLSGGQRQR-------IALAR 485
Query: 345 AFF-------MDEISTGLDSSTTFQIVNSLRQFIHI-LRGTTLISLLQPAPEAYDLFDDI 396
A + +DE ++ LDS + ++ + RG T++ + P A D I
Sbjct: 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAI---LAAKARGGTVVVIAH-RPSALASVDKI 541
Query: 397 ILISDGQIVYQGPREHVL 414
+++ DG+I GPRE VL
Sbjct: 542 LVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 70/258 (27%), Positives = 108/258 (41%), Gaps = 61/258 (23%)
Query: 816 TFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875
FDDV++S D +GV D VS +PG A++G TGAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLY----SAWLRLSP 931
++ +G I I G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 932 EVDSKTRKMFIEEVMELVELN-----LLRQ-----ALVGLPGVNGLSTEQRKRLTIAVEL 981
+ EE+ E + R+ +VG G LS +R+RL IA L
Sbjct: 434 PDATD------EEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARAL 486
Query: 982 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFEA- 1033
+ +P I+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 487 LKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNG 545
Query: 1034 -------FDELFLLKRGG 1044
FDE L+ RGG
Sbjct: 546 RVVESGSFDE--LVARGG 561
|
Length = 588 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 67/292 (22%), Positives = 108/292 (36%), Gaps = 70/292 (23%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GR 212
N+ + ++ I G +L+GP SGKTT + + RL G
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-------RLIEPTSGE 57
Query: 213 VTYNGHNMDEFVP---QRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYEMLTE 266
+ +G ++ E P +R Y+ Q IG MTV E +A + +
Sbjct: 58 IFIDGEDIREQDPVELRRKIGYVIQQ---IGLFPHMTVEENIALVPKLLKWP-------K 107
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326
RE+A D +L ++GLD D +S
Sbjct: 108 EKIRERA---------------------------DELLALVGLD---PAEFADRYPHELS 137
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTTLISLLQ 384
GGQ++RV L MDE LD T Q+ +F + + G T++ +
Sbjct: 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL---QEEFKRLQQELGKTIVFVTH 194
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436
EA+ L D I ++ +G+IV G + +L + P VA+F+
Sbjct: 195 DIDEAFRLADRIAIMKNGEIVQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 56/253 (22%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
S+ F++V Y M+ +G L+++S G AL+G TG+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 874 AGR-KTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE 932
K + +G ITI+GY ET G + V++ PE
Sbjct: 54 NALLKPS---SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF----------PE 95
Query: 933 VDSKTRKMFIEEVMELVELNLLR----------QALVGLPGVNGLSTE------------ 970
++F V++ VE +AL L V GLS +
Sbjct: 96 A-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGG 149
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1030
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D+
Sbjct: 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DV 208
Query: 1031 FEAFDELFLLKRG 1043
E D++ +L+ G
Sbjct: 209 AEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 26/187 (13%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQN-- 908
RPG + ++G G GK+T + +LAG P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 909 ---------DIHSPQVTVYESLLYSAWLR-LSPEVDSKTRKMFIEEVMELVEL-NLLRQA 957
+H PQ + + L +VD + + +EV+E + L N+L +
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKF---DEVVERLGLENVLDRD 210
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1017
V+ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+
Sbjct: 211 ------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGK 264
Query: 1018 TVVCTIH 1024
V+ H
Sbjct: 265 YVIVVEH 271
|
Length = 591 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 52/254 (20%), Positives = 94/254 (37%), Gaps = 59/254 (23%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+ +S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
R Y+ + +MTV + L + A +G M
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKG-----------------------------M 102
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEM---IRGISGGQRKRVTTGEMLVGPA 343
E L+ L + + I+ +S G ++++ ++
Sbjct: 103 PK-----AEIQKKLQAWLERLE--------IVGKKTKKIKELSKGNQQKIQFISAVIHEP 149
Query: 344 QAFFMDEISTGLDSSTTFQIVNS--LRQFIHILR--GTTLISLLQPAPEAYDLFDDIILI 399
+ +DE +GLD VN L+ I L+ G T+I +L D ++++
Sbjct: 150 ELLILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203
Query: 400 SDGQIVYQGPREHV 413
GQ V G E +
Sbjct: 204 KKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-07
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 58/258 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
L+G+S ++ G ++GP SGK+TL + G G V +G ++ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDGADLKQWDRE 388
Query: 227 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
+ Y+ Q DV + TV E +A R+ G DP+
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RF-------------GENADPEKI 424
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+ EA+ + IL L DT++G +SGGQR+R + A
Sbjct: 425 I----------EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQR-------IALA 466
Query: 344 QAFF-------MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396
+A + +DE ++ LD + N+++ + T ++ +P+ D I
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKI 523
Query: 397 ILISDGQIVYQGPREHVL 414
+++ DG+I G R+ VL
Sbjct: 524 LVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-07
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 21/215 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK----QETF 898
L+ + RPG L G GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
Q P+++V E++ L E+ +M M L NLLR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRE-- 127
Query: 959 VGLPGVN------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
+ L N Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047
V C ++ +A + + R GQ +
Sbjct: 188 --KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 40/208 (19%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG---RKTTGYVTGNITISG---YPKKQ 895
++ VS + G + ++G +G+GK+ L + G + V G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 896 ETFARISG----YCEQNDIHS--PQVTV----YESLLYSAWLRLSPEVDSKTRKMFIEEV 945
+ +I G Q+ + S P +T+ E L ++K E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 946 MELVELNLLRQALVGLPGV--------NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
+EL+EL VG+P + LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 998 DARAAAIVMRTVRNTV-DTGRTVVCTIH 1024
D A ++ ++ + G ++ H
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITI-----SGYPKKQETFARISGYCEQ 907
G + A+MG +GAGK+TL++++AG +G+I + +G Q + + + E
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML--FQEN 79
Query: 908 NDIHSPQVTVYESLLYSAWLRLSPEVD-SKTRKMFIEEVMELVEL-NLLRQALVGLPGVN 965
N +TV +++ L L P + + ++ + + + V + + L + LP
Sbjct: 80 NLF--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR----LP--E 127
Query: 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIH 1024
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 1025 QPS 1027
S
Sbjct: 188 HLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 28/206 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT---GNITISGYPKKQET 897
L V+ + G +L+G +G GK+TL+++++G + T+G V IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
F QN P +TV E++ A R+ P++ R+ +EE + LV L +A
Sbjct: 60 F--------QNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGL---TEA 107
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1016
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKR 1042
TV+ H D+ EA L L R
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT---TGYVTGNITISG---YPKKQE 896
L + F +TAL+G +G GK+T + L +TGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 897 T--FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE------VMEL 948
+ G Q P ++YE+++Y LRL+ D +E + +
Sbjct: 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
V+ +L AL LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESAL-------SLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-07
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L++VS R G + +L G GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 903 GYCEQND---IHS-----PQVTVYESLLYSAWLRLSPEVDSKTR----KMFIEEVMELVE 950
E+ IH +++V E++ L E+ M++ L +
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 951 LNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
L L P V L Q++ + IA L ++ +DEPT+ L A+++ +R
Sbjct: 131 LKL--DINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187
Query: 1011 N 1011
+
Sbjct: 188 D 188
|
Length = 506 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV 224
+ L VS IR G L GP +GKTTLL L G L S G+V G +++
Sbjct: 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL- 69
Query: 225 PQRTAAYISQH------DVHI-GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
R + + D + + TV E +A +G R E+ RR A
Sbjct: 70 RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGA---- 120
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
L+ +GL+ AD +SGG+++RV
Sbjct: 121 -------------------------ALRQVGLEHKADAFPEQ-----LSGGEQQRVAIAR 150
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
+V DE + LD + +I++ L++ + RGTT+I
Sbjct: 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRL-NK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHS 912
G LT ++G G GK++L+ + G T + G + S + + +F + ++
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84
Query: 913 PQ------VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL---RQALVGLPG 963
Q TV E++ + SP + + K + +++LL Q +G G
Sbjct: 85 AQKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVC 1021
+N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 139 IN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197
Query: 1022 TIHQ 1025
H+
Sbjct: 198 VTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 37/249 (14%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
T+L GV +R G + L+GP +GKTTLL A+ G L + G V G + V
Sbjct: 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAG----DDVE 68
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
+A S+ + + T +L+F + V E+ R P F
Sbjct: 69 ALSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRT---------PHRSRF 109
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
TE A+V + ++ G+ AD + +SGG+R+RV L
Sbjct: 110 --DTWTETDRAAV--ERAMERTGVAQFAD-----RPVTSLSGGERQRVLLARALAQATPV 160
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
+DE + LD + + + +R+ + G T ++ + A D+++L++DG++
Sbjct: 161 LLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
Query: 406 YQGPREHVL 414
GP VL
Sbjct: 219 AAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 55/218 (25%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNG 217
+ +L+ VS + PG +T L+GP SGK+T++ L Y G+V +G
Sbjct: 23 TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL-------ENFYQPQGGQVLLDG 75
Query: 218 HNMDEF---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS-RYEMLTELARREKA 273
+ ++ + + Q V ++++ +A+ G+ S +E + E A++ A
Sbjct: 76 KPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHA 129
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG--ISGGQRK 331
I L DT VG+ +G +SGGQ++
Sbjct: 130 HSF-----------------------------ISELASGYDTEVGE---KGSQLSGGQKQ 157
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQ 369
RV L+ Q +DE ++ LD+ + Q+ +L
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 830 MKLRGV-LDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITI 888
M+L V + RL +S R G + L+G GAGK+TL+ +AG G +G+I
Sbjct: 1 MQLNDVAVSTRLG---PLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPG--SGSIQF 54
Query: 889 SGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV 945
+G P + AR Y Q + V++ L L + ++ + EV
Sbjct: 55 AGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEV 110
Query: 946 MELVELNLLRQALVGLPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGL 997
E + L +G VN LS E QR RL AV L NP+ ++ +DEP + L
Sbjct: 111 AEALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 998 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
D A + R + G VV + H + + A D ++LLK+G
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
+L+ V+ +TALMG +G+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 902 SG--YCEQNDIHS--------------------PQVTVYESLLYSAWLRLSPEVDSKTRK 939
SG Y + DI P ++++E++ L+L+ V K++K
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLV--KSKK 117
Query: 940 MFIEEVMELVELNLLRQAL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 996
E V +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 997 LDARAAA 1003
LD A
Sbjct: 177 LDPENTA 183
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 1e-06
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1027 SIDIFEAFDELFLLKRG 1043
++FE D + +L+ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVL-------AGRKTTG---YVTGNITISGYP 892
L +++ + +TA++G +G GK+T + L K TG Y NI + G
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI-LKGKV 86
Query: 893 KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL- 951
E I G Q PQ ++++++ Y R+ + K + +E+ ++ V L
Sbjct: 87 DLVELRKNI-GMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 952 -----NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
L QAL LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRLHTQAL-------SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YP 892
L +S + A +G +G GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 893 KKQET--FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
K + + G Q P+ +++E++ Y LR++ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 951 L-----NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
L + L+++ L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 63/253 (24%), Positives = 96/253 (37%), Gaps = 55/253 (21%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
++ G+S + G LLGP +GK+T+ + G G++T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITV----LGVPVPAR 108
Query: 228 TAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ Q D E TVRE L R G+ +R
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------- 147
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
E V +L+ L+ AD V D +SGG ++R+T L+
Sbjct: 148 -------------EIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401
Q +DE +TGLD I LR + RG T++ EA L D + ++
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERLRSL--LARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 402 GQIVYQGPREHVL 414
G+ + +G R H L
Sbjct: 248 GRKIAEG-RPHAL 259
|
Length = 340 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV---TGNITISGYPK 893
DR L +S+S PG AL+G +G+GK+TL++++ + +G I + G+
Sbjct: 343 RDRPAL-DSISLVIEPGETVALVGRSGSGKSTLVNLI-----PRFYEPDSGQILLDGHDL 396
Query: 894 KQETFARISGYCEQ--NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
T A + D+ T+ ++ Y + + D E+ +
Sbjct: 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR----TEQADR-------AEIERALAA 445
Query: 952 NLLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+ + LP G NG LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 43/193 (22%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-- 225
+L V+ I G + L+GP GK+TLL + G L G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
QR + Q + ++V + L F+
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------------------- 102
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
A +G + L+ GLD +SGGQR RV L+ +A
Sbjct: 103 --PATLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 346 FFMDEISTGLDSS 358
+DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 57/255 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
IL+GVS + G +T +LG GKTTLL L G L G + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 227 RTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
A AY+ Q +TV E L LT LA + + PD
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL---------------LTGLAALPRRSRKIPDEIY 115
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI--RG--ISGGQRKRVTTGEM 338
++F +LK EM+ RG +SGGQ++++
Sbjct: 116 ELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
LV + +DE + G+ S I +R+ + G ++ + Q A +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYV 204
Query: 399 ISDGQIVYQGPREHV 413
+ G++V G + +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 59/238 (24%), Positives = 87/238 (36%), Gaps = 55/238 (23%)
Query: 178 PGRMTLLLGPPASGKTTLL---LALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQ 234
G + LLGP +GKTTLL L L ++++ G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 235 H----DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAA 290
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADF-------------- 91
Query: 291 TEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDE 350
L+ +GL AD VG+ +SGGQR+RV L +DE
Sbjct: 92 -------AAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDE 139
Query: 351 ISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
TGLD T + + GT ++ +A D ++L+ +G+++ G
Sbjct: 140 PFTGLDMPTQELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YPKKQ 895
V+ P +TA +G +G GK+T++ +V+ G V G + + G Y
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG----ARVEGEVLLDGEDLYGPGV 78
Query: 896 ETFA--RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-N 952
+ A R G Q P +++ ++++ A L+L+ + K +E+ + L N
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWN 136
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
++ L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 137 EVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 858 LMGVTGAGKTTLMDVL----AGRKTTGYVTGN-ITISGYPKKQETFA--RISGYCEQNDI 910
L+G +GAGK++L+ VL R T + GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV----MELVELNLLRQALVGLPGVNG 966
P +TV E+L+ E + + ++ +L++ L+ P
Sbjct: 93 LWPHLTVQENLI---------EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LH 141
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTL---MDVLAGRKTTGYVTGNITISG---YPKKQE 896
+ VS F +TA++G +G GK+T+ ++ + + VTG I + Y + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 897 --TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
+ R G Q P +++Y++++ A +L+ V+ E E+VE +L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNR-------SEADEIVESSLK 130
Query: 955 RQALVG------LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
R AL LS Q++RL IA + P +I MDEP S LD
Sbjct: 131 RVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 63/256 (24%), Positives = 100/256 (39%), Gaps = 70/256 (27%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF---- 223
+LKG+S I+ G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 224 -------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
V QR VH+ T+R+ L LA
Sbjct: 412 LRQAISVVSQR---------VHLFSATLRDNLL-----------------LA-------- 437
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYIL-KILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
A++ V+ L K+L D + +G E R +SGG+++R+
Sbjct: 438 ----------APNASDEALIEVLQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGEQRRLGI 486
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL---LQPAPEAYDL 392
L+ A +DE + GLD+ T QI+ L + + T++ + L +
Sbjct: 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMITHRLT----GLEQ 539
Query: 393 FDDIILISDGQIVYQG 408
FD I ++ +GQI+ QG
Sbjct: 540 FDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQET 897
L++VS + G + AL+G G+GK+TL+ +AG G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILIDGKDIAKLPLEE 70
Query: 898 FARISGYCEQ 907
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 44/184 (23%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+L+ ++ + G +LGP GK+TLL +AG + G V +G + P
Sbjct: 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPD 73
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
Y+ Q D + +TV + +A +G RE+A
Sbjct: 74 I--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------- 111
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346
+L+++GL D +SGG R+RV L +
Sbjct: 112 --------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALATRPKLL 152
Query: 347 FMDE 350
+DE
Sbjct: 153 LLDE 156
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 52/249 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG---KLDSSLRLYGRVTYNGHNMDEFVP 225
LKG+S I G T LLGP +GK+TLLL L G +++ GR N N V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKW-VR 78
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
+ D + TV + +AF G+ E+ RR + A
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA----------- 122
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
LK + + D+ +S GQ+KRV +L
Sbjct: 123 ------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPDV 159
Query: 346 FFMDEISTGLDSS---TTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
+DE LD T +I++ L +G T+I A + D +I++ +G
Sbjct: 160 IVLDEPMAYLDPRGQETLMEILDRLHN-----QGKTVIVATHDVDLAAEWADQVIVLKEG 214
Query: 403 QIVYQGPRE 411
+++ +G +
Sbjct: 215 RVLAEGDKS 223
|
Length = 274 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL--AGRKTTGY-VTGNITISGYP----KK 894
+L+ VS F +T+LMG TG+GKTT + L K +GY +G++ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKT-RKMFIEEVMELVELNL 953
F R G Q P +++ +++L A +R V K R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1014 DTGRTVVCT 1022
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK-------------QET 897
R G + L+G G GK+T + +LAG+ + N+ P Q
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNLGKFDDPPDWDEILDEFRGSELQNY 78
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKM--------FIEEVMELV 949
F ++ + I PQ Y L+ A V K ++ ++E+++ +
Sbjct: 79 FTKLLEG-DVKVIVKPQ---YVDLIPKA-------VKGKVGELLKKKDERGKLDELVDQL 127
Query: 950 EL-NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
EL ++L + ++ LS + +R+ IA L + F DEP+S LD + R
Sbjct: 128 ELRHVLDRN------IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL 181
Query: 1009 VRNTVDTGRTVVCTIHQPSI 1028
+R + V+ H ++
Sbjct: 182 IRELAEDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 59/230 (25%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
L+ ++V++S QE + VL + +S + G AL+G +G+GK+TL+ +L
Sbjct: 1 LSINNVSFSYP-EQEQQ---VLKN-------LSLELKQGEKIALLGRSGSGKSTLLQLLT 49
Query: 875 GRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVD 934
G G IT+ G P V+ E L S L+
Sbjct: 50 GDLKPQ--QGEITLDGVP----------------------VSDLEKALSSLISVLNQRP- 84
Query: 935 SKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 994
+F + NL R+ S +R+RL +A L+ + I+ +DEPT
Sbjct: 85 ----YLFDTTLRN----NLGRR----------FSGGERQRLALARILLQDAPIVLLDEPT 126
Query: 995 SGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSIDIFEAFDELFLLKRG 1043
GLD ++ + V +T++ T H I E D++ L+ G
Sbjct: 127 VGLDPITERQLLSLIFE-VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 60/278 (21%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV 224
T LK +S ++ G LLGP GKTTLL +AG L+ G + G ++
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQTA--GTIYQGGRDITRLP 72
Query: 225 PQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
PQ R + Q +TV + +A+ + +G+G R E A +
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----------RAEVAERV------- 115
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+L ++GL + +SGGQ++RV L
Sbjct: 116 -----------------AELLDLVGL-----PGSERKYPGQLSGGQQQRVALARALATSP 153
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILR---GTTLISLLQPAPEAYDLFDDIILIS 400
+DE + LD+ ++ LR I L+ G T I + EA + D I++++
Sbjct: 154 GLLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN 209
Query: 401 DGQIVYQG-PREHVLEFFEFMGFKCPERKGVADFLQEV 437
G I G P+E ++ P VADF+ EV
Sbjct: 210 HGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 153 LNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLY 210
++ L++ ++KK L VS P +T L+GP SGK+TLL ++ L+ + +
Sbjct: 8 VSDLSVYYNKKK---ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 211 GRVTYNGHNMDEFVPQRTAAYISQHDVHIG---------EMTVRETLAFSARCQGVGSRY 261
G + YNGHN+ + P+ + + IG M++ E + + R +G+
Sbjct: 65 GSIVYNGHNI--YSPRTDTVDLRK---EIGMVFQQPNPFPMSIYENVVYGLRLKGI---- 115
Query: 262 EMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321
++K LD +A + AS+ + +K D D+ +
Sbjct: 116 --------KDKQV-------LD---EAVEKSLKGASIWDE--VK----DRLHDSAL---- 147
Query: 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSL 367
G+SGGQ++RV +L + +DE ++ LD + +I +L
Sbjct: 148 --GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
|
Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 64/266 (24%)
Query: 154 NSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY-GR 212
L ILS K T+ ++ + G+ L+GP +GKT+LL AL G L Y G
Sbjct: 353 EDLEILSPDGK--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-----YQGS 405
Query: 213 VTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
+ NG + E P+ + +++ Q + + T+R+ +
Sbjct: 406 LKINGIELRELDPESWRKHLSWVGQ-NPQLPHGTLRDNVLLG------------------ 446
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGISGG 328
+PD + E + V++++ + GLD T +GD+ G+S G
Sbjct: 447 ---------NPDAS---DEQLQQALENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVG 489
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SL 382
Q +R+ L+ P Q +DE + LD+ + ++ +L R TTL+ L
Sbjct: 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDL 547
Query: 383 LQPAPEAYDLFDDIILISDGQIVYQG 408
Q +D I ++ DGQIV QG
Sbjct: 548 AQ--------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-06
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 36/202 (17%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYP-K 893
D+R +L + +S G L + G GAGKT+L+ +LAG R G V G P +
Sbjct: 12 DER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIR 66
Query: 894 KQ-ETFARISGYC-EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
+Q + + + Y Q I ++T E+L + RL D +E
Sbjct: 67 RQRDEYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGD--------DEA------ 109
Query: 952 NLLRQAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1004
L +AL VGL G V LS Q++R+ +A + + +DEP + +D + A
Sbjct: 110 --LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR 167
Query: 1005 VMRTVRNTVDTGRTVVCTIHQP 1026
+ + + G V+ T HQ
Sbjct: 168 LEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 71/230 (30%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L ++ + VL + GV+G+GK+TL+ Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL----LRQAL 958
S + FI+++ L+++ L L Q L
Sbjct: 57 --------FSRNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1017 RTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP-LGRHSSHLIKYFEG 1065
TV+ H + L I GP G+ ++ F G
Sbjct: 140 NTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVV--FSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEFVPQRTAAY 231
++PG+ L+G SGK+T+ +AG LY G + ++G +E + A
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAG-------LYQPWSGEILFDGIPREEIPREVLANS 554
Query: 232 IS--QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAA 289
++ D+ + E TVR+ L PD DL K A
Sbjct: 555 VAMVDQDIFLFEGTVRDNLTLWDPTI----------------------PDADLVRACKDA 592
Query: 290 ATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMD 349
A S Y D + E +SGGQR+R+ LV +D
Sbjct: 593 AIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNPSILILD 640
Query: 350 EISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL-----FDDIILISDGQI 404
E ++ LD T I ++LR+ RG T I + A+ L D+II++ G++
Sbjct: 641 EATSALDPETEKIIDDNLRR-----RGCTCIIV------AHRLSTIRDCDEIIVLERGKV 689
Query: 405 VYQGPRE 411
V +G E
Sbjct: 690 VQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 23/178 (12%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIH 911
G + G GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 912 SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG-----VNG 966
++ E+L + L + ++M + L A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQM---------PGSAL--AIVGLAGYEDTLVRQ 137
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 63/252 (25%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEFV 224
L G++ +RPG L+GP +GK+TL L LR Y GR+ +G ++ +
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL-------LRFYDPQSGRILLDGVDLRQLD 408
Query: 225 PQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
P R + D + +V E + + +PD
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRYG-------------------------RPDAT- 442
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGP 342
D ++AAA A+ ++I L DT +G+ + +SGGQR+R+ ++
Sbjct: 443 DEEVEAAA----RAAHAHEFISA---LPEGYDTYLGERGVT-LSGGQRQRIAIARAILKD 494
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPAPEAYDLFDDI 396
A +DE ++ LD+ + + +L +++G TTLI + + A D I
Sbjct: 495 APILLLDEATSALDAESEQLVQQALET---LMKGRTTLIIAHRLATVLKA-------DRI 544
Query: 397 ILISDGQIVYQG 408
+++ G+IV QG
Sbjct: 545 VVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 77/271 (28%)
Query: 155 SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVT 214
S + +S+ I L VS I G + L+G +GKTTLL L G ++ GR+
Sbjct: 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIV 63
Query: 215 YNGHNMDEFVPQRTAAYISQHDVHI--------GEMTVRETLA---FSARCQGVGSRYEM 263
++G + + A I + V I MTV E LA F A R +
Sbjct: 64 FDGKD----ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 264 LTEL-----ARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318
+ EL RR + AG TM
Sbjct: 120 VYELFPRLHERRIQRAG---------------------------------------TM-- 138
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--G 376
SGG+++ + G L+ + +DE S GL QI +++ Q LR G
Sbjct: 139 -------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ----LREQG 187
Query: 377 TTLISLLQPAPEAYDLFDDIILISDGQIVYQ 407
T+ + Q A +A L D ++ +G +V +
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYP----- 892
+LN+VS + + G AL+G +G GK+TL +L G + GN++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKLN 80
Query: 893 -KKQETFARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949
+++ F R Q+ I + P+ TV E + LR +D R E++ V
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAV 138
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+L+ L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 139 DLDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 44/196 (22%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
L+ ++ + G + ++LGP GKTTLL +AG + +G +T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIA-------------- 109
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
+ LK +GL+ I +SGGQR+RV L Q
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 348 MDEISTGLDSSTTFQI 363
+DE LD+ T Q+
Sbjct: 152 LDEPFGALDAFTREQM 167
|
Length = 255 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNIT-ISGYPKK 894
R +LN +S G + AL+G +G+GKTTL+ ++AG +T+G++ + T +S +
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
R G+ Q+ +TV++++ + L + P + +V +L+E+ L
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 127 AHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 41/252 (16%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHN---MDE 222
+L GV+ I +T L+GP SGK+TLL +L R+ G V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 223 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
+R + Q I +++ E +A + L L + +K +L
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGP 342
++ A + Q V D LD A + SGGQ++R+ L
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
+ DE + LD T +I SL F+ + + T++ + +A + D + + G
Sbjct: 165 PEVLLADEPTANLDPENTAKI-ESL--FLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 403 QIVYQGPREHVL 414
QIV GP V
Sbjct: 222 QIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-06
Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 55/257 (21%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
L+ V+ ++PG+M + GP SGK+TLL + D S G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
HD+ + ++ + + +R V + ++ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPDATQQEIE 422
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKRVTTGEMLVGPAQ 344
A + ASV D IL L DT VG+ RG+ SGGQ++R++ L+ A+
Sbjct: 423 HVA----RLASVHDD----ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAPEAYDLFDDIIL 398
+D+ + +D T QI+++LRQ+ G T+I S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQW---GEGRTVIISAHRLSALTEA-------SEILV 521
Query: 399 ISDGQIVYQGPREHVLE 415
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+L+ VS + PG L+G +GK+TLL LAG+L +G
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL---------EPDSGE----VTRP 63
Query: 227 RTA--AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
+ Y+SQ E TV + + +G G E+L EL D L
Sbjct: 64 KGLRVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 285 FMKA-AATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+G + L LG D V +SGG R+RV L+
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
+DE + LD + + L ++ GT ++
Sbjct: 173 DLLLLDEPTNHLDLES----IEWLEDYLKRYPGTVIV 205
|
Length = 530 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 57/253 (22%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRLYGR-VTYNGHNMDEFV 224
LKG++ G M LLGP +GK+TL L G L + + G + Y+ ++ E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 225 PQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
++T + Q+ D + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+KA EG E ++ +SGGQ+KRV +L
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 344 QAFFMDEISTGLDSSTTFQIVNSL----RQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
+ +DE ++GLD QI+ L ++ I I+ T + L P Y D + ++
Sbjct: 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYVM 210
Query: 400 SDGQIVYQG-PRE 411
SDG+I+ +G P+E
Sbjct: 211 SDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 50/234 (21%)
Query: 179 GRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDV 237
G + ++GP +GK+TLL +AG ++ + G + N + P QR + + Q +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEAS 297
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 298 VVTDYILKILGLDVCADTMVGDEMIR---GISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
D + D + R +SGGQR+RV LV P +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
LD +++ ++Q + T L+ + +A + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ--ET 897
+N S G + +MG++G+GK+TL+ +L T G + I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 898 FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
+ Q+ P TV E++ + ++ P+ + + R E +ELV
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELV-------- 152
Query: 958 LVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
GL G N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 --GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YP 892
LN ++ +TAL+G +G GK+T + D+++ K + G + + G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVLLDGKNIYD 75
Query: 893 KKQETFA--RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
K + + G Q P +++Y+++ Y R+ D K +E ++
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAA 132
Query: 951 L------NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
L +L + AL LS Q++RL IA + P +I MDEPTS LD
Sbjct: 133 LWDEVKDDLKKSAL-------KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
L ++ +TAL+G +G GK+T + D++ K + G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 896 ETFARISGYCEQNDI-----------HSPQ---VTVYESLLYSAWLRLSPEVDSKTRKMF 941
+ Y D+ P +++Y+++ Y P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 942 IEEVMEL----------VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
++E++E V+ L + AL GLS Q++RL IA L P ++ MD
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSAL-------GLSGGQQQRLCIARALAVEPEVLLMD 171
Query: 992 EPTSGLD 998
EPTS LD
Sbjct: 172 EPTSALD 178
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGY-- 891
+ +V+ +TA++G +G GKTTL+ D + G + V G I G
Sbjct: 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDI 72
Query: 892 --PKKQETFARIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
P+ T R G Q P +++Y+++ + P + K ++ +
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSK---HKLDRI 122
Query: 949 VELNLLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
VE +L + AL + PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 123 VEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-06
Identities = 68/272 (25%), Positives = 105/272 (38%), Gaps = 62/272 (22%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKL----DSSLRLYGRVTYNGHNMDEFVPQRTAAY 231
I G + ++G GKT+L+ A+ G+L SS+ + G V Y VPQ +
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------VPQVS--- 688
Query: 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP-DPDLDVFMKAAA 290
I TVRE + F GS +E R +A + DLD+
Sbjct: 689 ------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLDLLPGRDL 731
Query: 291 TEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDE 350
TE E V ISGGQ++RV+ + + + D+
Sbjct: 732 TEIGERGV-------------------------NISGGQKQRVSMARAVYSNSDIYIFDD 766
Query: 351 ISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPR 410
+ LD+ Q+ +S + L+G T + L+ L D IIL+S+G I +G
Sbjct: 767 PLSALDAHVAHQVFDSCMK--DELKGKTRV-LVTNQLHFLPLMDRIILVSEGMIKEEGTF 823
Query: 411 EHVLEFFEFMGFKCPERKGVADFLQEVTSRKD 442
+ + K E G D QEV + +
Sbjct: 824 AELSKSGSLFK-KLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHI 373
DT + + + R SGG+R+R+ +L+ A +DE + GLD T Q+ L +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL---LSLIFEV 144
Query: 374 LRGTTLISL---LQPAPEAYDLFDDIILISDGQIVYQG 408
L+ TLI + L + D I+ + +G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L VS + G A++G G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWD 78
Query: 901 IS---GYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
+ G QN D TV + + + E R+ +E V + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMED 132
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
L P + LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1017 R-TVVCTIHQPSIDIFEA 1033
TV+ H D+ EA
Sbjct: 191 GITVLSITH----DLDEA 204
|
Length = 279 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 76/263 (28%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
LKG++ I+ G +T +LG +GK+TL L G L S GR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 229 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKA 288
Y + G M +RE+ VG ++ DPD +F
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 289 AATEGQEASVVTDYILKILGLDVCADTM---VGDEMIR-GI-----------SGGQRKRV 333
ASV D + L + D + V + + R GI S GQ+KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393
+LV + +DE + GLD +I+ L + L T +I A D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII-----ATHDIDIV 205
Query: 394 ----DDIILISDGQIVYQG-PRE 411
D++ ++ +G+++ QG P+E
Sbjct: 206 PLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 64/284 (22%), Positives = 111/284 (39%), Gaps = 75/284 (26%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
LK ++ I ++T L+GP GK+TLL +L L +R+ G+V ++G ++
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI------ 70
Query: 227 RTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSRYEMLTELARRE- 271
Y + DV +G M++ + +A+ R G+ + E L E+
Sbjct: 71 ----YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKE-LDEIVEESL 125
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRK 331
K A + D D +A LGL SGGQ++
Sbjct: 126 KKAAL-WDEVKDRLHDSA-----------------LGL----------------SGGQQQ 151
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGT-TLISLLQPAPEAY 390
R+ L + +DE ++ LD T +I + I L+ T++ + +A
Sbjct: 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKI----EELIQELKKKYTIVIVTHNMQQAA 207
Query: 391 DLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+ D DG++V GP E + F P+ K D++
Sbjct: 208 RISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 62/228 (27%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG---HNMDE 222
++IL GV +++ G L+G SGK+TLL LAG D S G V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 223 FVPQRTA------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
R ++ Q + I + E + A +G SR R A
Sbjct: 80 --EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-------RNGAKA- 129
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
+L+ LGL D + +SGG+++RV
Sbjct: 130 --------------------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSL----RQFIHILRGTTLI 380
G F DE + LD T +I + L R+ GTTLI
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-----GTTLI 201
|
Length = 228 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 170 KGVSGI---IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF--- 223
KGV+ I G + +++G SGK+T + L ++ + G++ +G N+ +
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPV 63
Query: 224 ----VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
V ++ + Q MT+ + + G E R+EKA
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA------ 110
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
L+ +LK++GL+ DE+ SGG ++RV L
Sbjct: 111 --LE-------------------LLKLVGLEEYEHRY-PDEL----SGGMQQRVGLARAL 144
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
MDE + LD + + L++ + T++ + EA + D I+++
Sbjct: 145 AAEPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIM 203
Query: 400 SDGQIVYQGPREHVL 414
G+IV G + +L
Sbjct: 204 KAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-05
Identities = 64/270 (23%), Positives = 106/270 (39%), Gaps = 85/270 (31%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
IL G+S I G+ ++G +GK+T+L L R Y G +T +G ++ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDV 330
Query: 224 -----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREK 272
VPQ T + T+A++ + + E +
Sbjct: 331 TQQSLRRAIGIVPQDTVLFND-------------TIAYNIKYGRPDATAEEV-------- 369
Query: 273 AAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG--ISGGQR 330
AAA Q I L DT VG+ RG +SGG++
Sbjct: 370 --------------GAAAEAAQIHDF-------IQSLPEGYDTGVGE---RGLKLSGGEK 405
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQ 384
+RV ++ +DE ++ LD+ T I +LR+ + G TTL+ S +
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE---VSAGRTTLVIAHRLSTII 462
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVL 414
A D+II++ +G+IV +G E +L
Sbjct: 463 DA-------DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 809 PFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTT 868
P EPH DV + + V++ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 869 LMDVLAGRKTTGYVTGNITISGYP-----KKQETFARISGYCEQNDIHS--PQVTVYESL 921
L+ L G G GN+ I+G P Q A I+ E H P + V +++
Sbjct: 302 LVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 922 LYSAWLRLSPEVDSKTRKMFIEEVMEL------VELNLLRQALVGLPGVNGLSTEQRKRL 975
S + S KM I+ EL ++ ++ A LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 45/202 (22%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
SLT ++V+++ D +L +S + G AL+G TG GK+TL+ +L
Sbjct: 338 SLTLNNVSFTYP-----------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 874 AGRKTTGYV--TGNITISGYPKKQETFARISGYCEQNDIHSPQVT---VYESLLYSAWLR 928
T + G I ++G P I+ Y E + V V+ L+SA LR
Sbjct: 387 ----TRAWDPQQGEILLNGQP--------IADYSEAALRQAISVVSQRVH---LFSATLR 431
Query: 929 -----LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP---GVNG--LSTEQRKRLTIA 978
+P + + EV++ V L L + GL G G LS +++RL IA
Sbjct: 432 DNLLLAAPNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487
Query: 979 VELVANPSIIFMDEPTSGLDAR 1000
L+ + ++ +DEPT GLDA
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-05
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 16/189 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQ----E 896
L+ ++ RPG AL+G +GAGK+TL +L Y +G I + G +Q E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL----LRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 897 TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
AR++ + + + +V E++ Y EV++ R E + L
Sbjct: 412 LRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYD 467
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1016
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ G
Sbjct: 468 TYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKG 525
Query: 1017 RTVVCTIHQ 1025
RT + H+
Sbjct: 526 RTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR 876
F +V+YS +L +S F G + ++G +GAGK+TL+ ++
Sbjct: 6 FKEVSYS-------------SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--N 50
Query: 877 KTTGYVTGNITISGYPKKQ----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE 932
+ G+I I G K + +I +Q H + TV +++ Y L+
Sbjct: 51 RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKN 108
Query: 933 VDSKTRKMFIEEVMELVELN---LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 989
VD +E + +V LN R V LS + +R++IA L NP ++
Sbjct: 109 VD-------VEYYLSIVGLNKEYATRD-------VKNLSGGEAQRVSIARTLANNPEVLL 154
Query: 990 MDEPTSGLDARAAAIVMRTVRN 1011
+DEPTS LD + I+ +
Sbjct: 155 LDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYV-TGNITISGYPKKQ-- 895
V +N VS R G + +MG++G+GK+TL+ + T+G V I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 896 ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
E + Q+ P TV E++ + ++ V R+ E +ELV
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELV------ 148
Query: 956 QALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
GL G + LS ++R+ +A L +P I+ MDE S LD
Sbjct: 149 ----GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 58/234 (24%)
Query: 820 VTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT 879
V Y+ D+P VL + VS + G ++G TGAGK+TL +LA +
Sbjct: 14 VRYAPDLPP------VLKN-------VSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 880 GYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESL--------LYSAWLRLSP 931
G I I G + P + SL L+S +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
+ + I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLLKRG 1043
E T+ +D A++ +T+R T T++ H + ID +D++ ++ G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
LN+++ +TAL+G +G GK+T + D++ G K + GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 896 ETF-----ARISGYCEQNDIHSPQ---VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
F R G Q +P +++Y+++ Y P++ K ++E+
Sbjct: 79 NNFDILELRRKIGMVFQ----TPNPFLMSIYDNISYG------PKIHGTKDKKKLDEI-- 126
Query: 948 LVELNLLRQALVGLP----GVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARA 1001
VE +L + AL N LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 127 -VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
Query: 1002 AAIVMRTVRNTVDTGRTVVCT 1022
+ + N ++ ++ T
Sbjct: 186 TGKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTT----LMDVLAGRKTTGYVTGNITISGYPKKQET 897
L+ ++ + + G + AL+G +G+GK+ ++ +L +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP--PGLTQTSGEILLDGRPLLPLS 58
Query: 898 F-ARISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
R QN + P T+ + + ++ I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFA 899
+L+ VS +PG + L+G GAGK+TL+ V+ G G + K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 900 RISGYCEQN---DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
RI GY Q D P L + +LRL P +K I ++ V+ L
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
A P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 A----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 55/234 (23%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
+ +V+Y+ + R + D V L G++ TA +G TG+GK+T+M +L
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFD---VNLTIEDGSY-----TAFIGHTGSGKSTIMQLL 53
Query: 874 AG--RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
G T G V + T+ I+ + DI + V L++ P
Sbjct: 54 NGLHVPTQGSVRVDDTL------------ITSTSKNKDIKQIRKKV--GLVFQF-----P 94
Query: 932 EVDSKTRKMFIEEVM---------------ELVELNLLRQALVG----LPGVN--GLSTE 970
E ++F E V+ E L + ALVG L N LS
Sbjct: 95 E-----SQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG 149
Query: 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 30/161 (18%)
Query: 855 LTALMGVTGAGKTT-------LMDVLAGRKTTG---YVTGNITISGYPKKQETFARISGY 904
+TA++G +G GK+T +++++ KTTG Y NI Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG---- 960
Q P+ ++Y+++ Y P++ K ++E++E LR A +
Sbjct: 110 VFQKPNPFPK-SIYDNVTYG------PKIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 961 ---LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 37/184 (20%)
Query: 832 LRGV---LDDRLVL----LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTG 884
LRG+ D + V+ L +G F LT L+G +G GKTT++ ++AG +T +G
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGFETPD--SG 69
Query: 885 NITISGYPKKQETFARISGYCEQNDIHS--------PQVTVYESLLYSAWLRLSPEVDSK 936
I + G + + E +++ P +TV+E++ + ++ +P +
Sbjct: 70 RIMLDG-----QDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT 122
Query: 937 TRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 996
R + E + +V+L Q + LS Q++R+ IA +V P ++ +DE S
Sbjct: 123 PR---VMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
Query: 997 LDAR 1000
LD +
Sbjct: 175 LDYK 178
|
Length = 375 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 42/264 (15%)
Query: 155 SLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVT 214
+L +S R T+L +S G++T L+G SGK+TLL L S G +
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEIL 69
Query: 215 YNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
+ ++ + + R AY+ Q MTVRE +A +G RY L R
Sbjct: 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF- 120
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRK 331
G + + ++GL A +V +SGG+R+
Sbjct: 121 ---------------------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQ 154
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391
R ++ ++ +DE ++ LD + ++ +L + RG T+I++L A
Sbjct: 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAAR 213
Query: 392 LFDDIILISDGQIVYQGPREHVLE 415
D ++ + G+++ QG ++
Sbjct: 214 YCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG-----YPKKQETFARISGYCEQ 907
G TA++G G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 908 NDIHSPQVTVYESL---------LYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
N +TV E + L++ W + + ++ T+ M + L + +
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLADQS------ 140
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892
L+ VS + R G + AL+G GAGK+TLM +L+G +G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 42/250 (16%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
ILKG++ I G + ++GP SGK+TL +AG + L G + + G ++ + P
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEP 78
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELA--RREKAAGIKPDPDLD 283
+ A H+G LAF + G LA + K G P+ D
Sbjct: 79 EERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPL 124
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
F++ ++ + LK++G+D + + + G SGG++KR +M + +
Sbjct: 125 EFLE----------IINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDS 170
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII-----L 398
+ +DE +GLD I + + + LI+ Q L D I +
Sbjct: 171 ELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ------RLLDYIKPDYVHV 224
Query: 399 ISDGQIVYQG 408
+ +G+I+ G
Sbjct: 225 MQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 24/181 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK---TTGYVTGNITISG---YPKKQE 896
L+ +S F LTAL+G +G GK+T + L +TG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 897 TFA--RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL--- 951
+ G Q P +VY+++ Y L+++ D + +EE ++ +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 952 ---NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
NL R A S Q++R+ IA L P ++ +DEPTS LD +++ + T
Sbjct: 137 TKDNLDRNA-------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 1009 V 1009
+
Sbjct: 190 L 190
|
Length = 251 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFAR 900
L +VS G A++G G+GK+T+ +L G K G I I G +E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLKE 80
Query: 901 IS---GYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLLR 955
I G QN D TV + + + + V K K I+++ + V + + L
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKVGMEDYLD 137
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRNT 1012
+ P LS Q++R+ IA L NP II DE TS LD + + M +R T
Sbjct: 138 KE----P--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191
Query: 1013 VDTGRTVVCTIHQPSIDIFEAF--DELFLLKRGGQEIYVG 1050
+T++ H D+ EA D++ + G+ I G
Sbjct: 192 RK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 14/199 (7%)
Query: 836 LDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-----VTGNITISG 890
++D+ +L + ++ + +MG +G+GK+TL+ VL R Y V G + G
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFG 77
Query: 891 YPKKQETFARIS---GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
Q ++ G Q P +++Y+++ Y L+ + + K +EE +
Sbjct: 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLR 135
Query: 948 LVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + + +
Sbjct: 136 KVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194
Query: 1008 TVRNTVDTGRTVVCTIHQP 1026
+ + +V H P
Sbjct: 195 LI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 72/199 (36%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
L+ +S F +TAL+G +G GK+T + D++ G + V G I + G
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDG----- 72
Query: 896 ETFARISGYCEQNDIHSPQV---------------------TVYESLLYSAWLRLSPEVD 934
+I+ P V +++E++ Y LR++ D
Sbjct: 73 ------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG--LRVNGVKD 118
Query: 935 SKTRKMFIEEVMELVELNLLRQAL----------VGLPGVNGLSTEQRKRLTIAVELVAN 984
+ E VE +L AL L GLS Q++RL IA L
Sbjct: 119 K-------AYLAERVERSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVE 167
Query: 985 PSIIFMDEPTSGLDARAAA 1003
P ++ MDEP S LD A
Sbjct: 168 PEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ- 895
L+ +N+V+ R + +L+G GAGKTT+ + L G + T G + I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 896 ------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRL----------SP-----EVD 934
TF Q+ ++TV E+LL + +L +P E +
Sbjct: 78 ARMGVVRTF--------QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 935 SKTRKMFIEEVMELVEL-NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 993
+ R E + L+E N RQA L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 994 TSGLD 998
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 70/220 (31%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ ++++ D VLL +S +PG + G +G GK++L LA
Sbjct: 1 IELENLSL------------ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
Query: 875 GRKTTGYVTGNITISGYPKKQETF---ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
G + +G I G P+ ++ R Y P T+ E L+Y W +
Sbjct: 49 GLWP--WGSGRI---GMPEGEDLLFLPQR--PYL-------PLGTLREQLIY-PWDDV-- 91
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
LS +++RL A L+ P +F+D
Sbjct: 92 -----------------------------------LSGGEQQRLAFARLLLHKPKFVFLD 116
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031
E TS LD + + + ++ + G TV+ H+PS+ F
Sbjct: 117 EATSALDEESEDRLYQLLK---ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+TF V + + R + D V+ + G A++G TG+GK+TL+ L
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYD--------VNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 875 G--RKTTGYVT-GNITISGY--PKKQETFARISGYCEQNDIHSPQV---TVYESLLYSAW 926
G + T+G VT G I+ KK + + G Q H Q+ TV + + +
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH--QLFEETVEKDICFGPM 112
Query: 927 LRLSPEVDSKTRKMFIEEVMELVELN--LLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 984
E D+K + E++ELV L LL ++ L G Q +R+ IA L
Sbjct: 113 NFGVSEEDAKQK---AREMIELVGLPEELLARSPFELSG------GQMRRVAIAGVLAME 163
Query: 985 PSIIFMDEPTSGLDAR 1000
P ++ +DEPT+GLD +
Sbjct: 164 PEVLVLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 44/208 (21%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ--RTAAYIS 233
+RPG LLG +GKTT L G D+++ G T G ++ + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTVT-SGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEG 293
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 294 QEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353
+E V ++ ++ LGL + AD + G SGG +++++T L+G +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 354 GLDSSTTFQIVNSLRQFIHILRGTTLIS 381
G+D + N++ I R L S
Sbjct: 2100 GMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 60/262 (22%), Positives = 97/262 (37%), Gaps = 40/262 (15%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL------DSSLRLYGR 212
L+ L V I G M LLGP SGK+TLL L+G + S + L GR
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 213 VTYNGHNMDEFVPQRTA--AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
+ + + A YI Q + ++V E + A +GS T R
Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA----LGS-----TPFWR- 119
Query: 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQR 330
F + +A L +G+ + + +SGGQ+
Sbjct: 120 ---------TCFSWFTREQKQRALQA-------LTRVGM-----VHFAHQRVSTLSGGQQ 158
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY 390
+RV L+ A+ DE LD + ++++LR I+ G T++ L A
Sbjct: 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGITVVVTLHQVDYAL 217
Query: 391 DLFDDIILISDGQIVYQGPREH 412
+ I+ + G + Y G +
Sbjct: 218 RYCERIVALRQGHVFYDGSSQQ 239
|
Length = 262 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-05
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 38/208 (18%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYV--TGNITISGYPKKQETFARISGYCEQN 908
PG + AL+G +G+GK+T+ +L Y G + + G P Q + +
Sbjct: 505 HPGEVVALVGPSGSGKSTVAALLQNL----YQPTGGQVLLDGVPLVQ---------YDHH 551
Query: 909 DIHSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967
+H V E +L+S +R + EE+M + ++ P NG
Sbjct: 552 YLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFP--NGY 607
Query: 968 STE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1015
TE Q++R+ IA LV P ++ +DE TS LDA + ++ +
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQESRSRA 663
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
RTV+ H+ S E D++ +LK+G
Sbjct: 664 SRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG- 903
VS R G A++G G+GK+TL +LAG +G I I+ +P ++ S
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 904 ----YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
+ + N +P++ + + LRL+ +++ + R+ I E + +V L
Sbjct: 89 IRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGL-------- 138
Query: 960 GLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
LP + L+ Q++R+ +A L+ P II DE + LD
Sbjct: 139 -LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 40/254 (15%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYGRVTYNGHNMDEFVP 225
IL+GVS I ++T ++GP GK+T L L +L+S +R+ GRV + N
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN------ 75
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
I + V++ + + ++ S Y+ +A K G +P ++D
Sbjct: 76 ------IYERRVNLNRLRRQVSMVHPKPNLFPMSVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
+++A + + I K LD +SGGQ++R+ L +
Sbjct: 127 VESALKDADLWDEIKHKIHKS-ALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
MDE GLD + ++ SL Q + + T++ + + + +SD
Sbjct: 172 LLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQ-------VSRLSDFTAF 223
Query: 406 YQGPREHVLEFFEF 419
++G + + EF
Sbjct: 224 FKGNENRIGQLVEF 237
|
Length = 261 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 857 ALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVT 916
L+G GAGK+TL+ +LAG +G +T+ G R+S +P++T
Sbjct: 52 GLIGRNGAGKSTLLRLLAG--IYPPDSGTVTVRG---------RVSSLLGLGGGFNPELT 100
Query: 917 VYESL-LYSAWLRLSP-EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974
E++ L L LS E+D K I+E++E EL + LP V S+ + R
Sbjct: 101 GRENIYLNGRLLGLSRKEIDEK-----IDEIIEFSELG----DFIDLP-VKTYSSGMKAR 150
Query: 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1034
L A+ P I+ +DE + DA R +R + G+TV+ H PS I
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLC 209
Query: 1035 DELFLLKRG 1043
D +L++G
Sbjct: 210 DRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 50/200 (25%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
+ L ++ I G++T+++G GK++LLLA+ G++ + L G+V ++ N E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSF 70
Query: 226 QRT-------AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+ T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKRVTTG 336
D DL F G + T +G+ RGI SGGQR+R+
Sbjct: 122 DIDLLPF-------GDQ-------------------TEIGE---RGINLSGGQRQRICVA 152
Query: 337 EMLVGPAQAFFMDEISTGLD 356
L F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 54/256 (21%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
L G++ I G + ++G GK++LL AL ++D ++ G V G +VPQ+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGSV--AYVPQQ- 707
Query: 229 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKA 288
A+I Q+D ++RE + F Y+ + E A + PDL++
Sbjct: 708 -AWI-QND------SLRENILFG--KALNEKYYQQVLE------ACALL--PDLEILPSG 749
Query: 289 AATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFM 348
TE E V +SGGQ++RV+ + A +
Sbjct: 750 DRTEIGEKGV-------------------------NLSGGQKQRVSLARAVYSNADIYLF 784
Query: 349 DEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
D+ + +D+ I + +L+ T I L+ D II++S G+I G
Sbjct: 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI-LVTHGISYLPQVDVIIVMSGGKISEMG 843
Query: 409 PREHVLE----FFEFM 420
+ +L+ F EF+
Sbjct: 844 SYQELLQRDGAFAEFL 859
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 58/175 (33%)
Query: 855 LTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQ 914
+TAL+G +G GK+T + L N I G+ + Y + DI+ P
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRM--------NDLIPGFRHEGHI------YLDGVDIYDPA 76
Query: 915 V---------------------TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL----- 948
V ++++++ Y LR+ E D FIEE +E
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDED----FIEERVEESLKAA 130
Query: 949 -----VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
V+ L + AL GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 131 ALWDEVKDKLDKSAL-------GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 44/231 (19%)
Query: 179 GRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDV 237
G +T ++GP SGK+TLL +AG GRV NG ++ P R + + Q +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEAS 297
+TV + + G+ ++ E R+ L K E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 298 VVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDS 357
+SGG+R+RV +LV +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 358 STTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
+ +++ L +H T++ + +A L ++ + +G+I QG
Sbjct: 162 ALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 45/212 (21%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
K +LKGVS I G + ++G SGK+TLL L G LD+ G V +NG ++ +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPTS--GEVLFNGQSLSK 71
Query: 223 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282
A ++ L F + + +L + E
Sbjct: 72 LSSNERAKLRNKK------------LGF------IYQFHHLLPDFTALE----------- 102
Query: 283 DVFM-----KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
+V M K + E +E + +L+ +GL+ + + +SGG+R+RV
Sbjct: 103 NVAMPLLIGKKSVKEAKERAYE---MLEKVGLEHRINHRPSE-----LSGGERQRVAIAR 154
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQ 369
LV DE + LD++ I + + +
Sbjct: 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 943 EEVMELVELNLLRQALVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPT 994
+ ELVE +L + AL VN GLS Q++RL IA L +P +I MDEP
Sbjct: 171 DAEDELVERSLRQAALWD--EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 995 SGLDARAAA 1003
S LD A +
Sbjct: 229 SALDPIATS 237
|
Length = 305 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 822 YSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTT 879
SVD RGV+ +++VS + G + ++G +GAGKTTL ++AG T+
Sbjct: 290 ISVD-------RGVVK----AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 880 GYVTGNI-------TISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE 932
G V + T G P + R G Q P TV ++L + L L E
Sbjct: 339 GEVNVRVGDEWVDMTKPG-PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397
Query: 933 VDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992
+ K I M + + L P + LS +R R+ +A L+ P I+ +DE
Sbjct: 398 L--ARMKAVITLKMVGFDEEKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 993 PTSGLDARAAAIVMRTVRNTVDTGR 1017
PT +D I V +++ R
Sbjct: 454 PTGTMD----PITKVDVTHSILKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 41/270 (15%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG----RKTTGYVTGNITIS---G 890
D +L ++S G + ++G +GAGK+ LM VL G T+G + ++ + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 891 YPKKQETFARISGYC------EQNDIHSPQVTVYESL-------------LYSA------ 925
Y ++ C E+ D + + + LY
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 926 WLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANP 985
L E+ + ++ + ++L+E+ L + + LS +++R+ +A +L P
Sbjct: 131 VLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEP 187
Query: 986 SIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044
+ DEPT LD + A +V + V +G ++V T H P + I + D+ L+ G
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGE 246
Query: 1045 QEIYVGPLGRHSSHLIKYFEGNPGVSKIKN 1074
+ G + + EG V K
Sbjct: 247 ----IKEEGTPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 33/154 (21%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYN 216
N S + I L SGI L++GP +GK+++L A+ + LYG+
Sbjct: 10 NFRSFKDIDIEKL-FDSGI------FLIVGPNGAGKSSILDAI------TFALYGKTPRL 56
Query: 217 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
G I GE + L F G +Y + E R
Sbjct: 57 G-------AFSLDDLI-----RAGEKSASVELEFEVN----GKKYRIEREFRRGRG---- 96
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310
+ L + V + I ++LGLD
Sbjct: 97 QSTGSLQIIEVDGERIADGKKDVNEKIEELLGLD 130
|
Length = 908 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 31/235 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARI 901
L +S G ++G GAGK+TL+ ++AG K T +G + ++G ++
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTG---------KV 90
Query: 902 SGYCEQNDIHSPQVTVYESL-LYSAWLRLSP-EVDSKTRKMFIEEVMELVELNLLRQALV 959
+ E P++T E++ L L L+ E+D K ++E++E EL +
Sbjct: 91 APLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK-----VDEIIEFAEL----GDFI 141
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1019
P V S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 142 DQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 1020 VCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKN 1074
V H I + D L+ G + P +I +E + N
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSP-----EEVIPAYEEDLADRLSLN 249
|
Length = 249 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 58/263 (22%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE----- 222
+LKG++ +T L+G GK+TL + L+G L G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 223 -FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ Q+ A + I + +AFS R GV E+ RR A
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
L + + I+ +S GQ+KRV LV
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFI----HILRGTTLISLLQPAPEAYDLFDDII 397
A+ +DE + GLD + Q++ +R+ + H++ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 398 LISDGQIVYQGPREHVLEFFEFM 420
++ GQI+ G V E M
Sbjct: 208 VLRQGQILTHGAPGEVFACTEAM 230
|
Length = 271 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL--LALAGKLDSSLRLYGRVTYNGHN 219
KH LK ++ I ++T L+GP GK+TLL L L R+ G V +G N
Sbjct: 19 DKHA--LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN 75
|
Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 80/265 (30%)
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTA-- 229
+S +R G + L+GP +GK+TLL +AG L S G + + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARH 70
Query: 230 -AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKA 288
AY+SQ M V ++ LT +
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 289 AATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI---SGG--QRKRVTTGEMLVGP- 342
AS + +V + D++ R + SGG QR R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 ----AQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL---RGTTLISLLQPAPEAYDL--- 392
Q +DE LD + +L + + L ++S ++DL
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQ----QAALDRLLSELCQQGIAVVMS-------SHDLNHT 196
Query: 393 ---FDDIILISDGQIVYQGPREHVL 414
D + L+ G+++ G R+ VL
Sbjct: 197 LRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 59/285 (20%), Positives = 121/285 (42%), Gaps = 48/285 (16%)
Query: 157 NILSSRKKHIT-----ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRL 209
NI+S++ H++ L G+S +T L+GP GK+T L L D ++++
Sbjct: 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 210 YGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
G + + G N+ Y S+ D+ + +R+ + + Q + + +A
Sbjct: 63 TGEIKFEGQNI----------YGSKMDL----VELRKEVGMVFQ-QPTPFPFSVYDNVAY 107
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329
K AG+K D ++ + ++A++ + D + D + SGGQ
Sbjct: 108 GLKIAGVK---DKELIDQRVEESLKQAAIWKE----------TKDNL--DRNAQAFSGGQ 152
Query: 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389
++R+ L + +DE ++ LD ++ +I +L + H T I + +A
Sbjct: 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY---TFIMVTHNLQQA 209
Query: 390 YDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+ D + +G ++ GP E + F P+++ +D+L
Sbjct: 210 GRISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 6e-05
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR--KTTGYVTGNITISGYPKKQETFAR 900
LN ++ + G L A++G G GK++L+ L K G+V +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL---RQA 957
I QND ++ E++L+ L + K + +E L +L +L +
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
+G GVN LS Q++R+++A + +N I D+P S +DA
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
+ F +VT++ + LR +++ G AL+G +G+GK+T+ ++L
Sbjct: 342 IEFRNVTFTYPGKEVPALR-----------NINFKIPAGKTVALVGRSGSGKSTIANLL- 389
Query: 875 GRKTTGY--VTGNITISGYPKKQETFARISGYC---EQNDIHSPQVTVYESLLYSAWLRL 929
T Y G I + G+ + T A + QN +H T+ ++ Y+ +
Sbjct: 390 ---TRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN-VHLFNDTIANNIAYARTEQY 445
Query: 930 SPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG--LSTEQRKRLTIAVELVANPSI 987
S E + +M M+ + + L + G NG LS QR+R+ IA L+ + I
Sbjct: 446 SREQIEEAARM--AYAMDFINK--MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 988 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ +DE TS LD + + + + + RT + H+ S E DE+ +++ G
Sbjct: 502 LILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 45/248 (18%)
Query: 809 PFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLN-SVSGAFRPGVLTALMGVTGAGKT 867
P + + D+V+++ DD LVL N ++S R V AL+G TG+GK+
Sbjct: 335 PLQSGRIDIDNVSFAYR-----------DDNLVLQNINLSVPSRGFV--ALVGHTGSGKS 381
Query: 868 TLMDVLAGRKTTGYV--TGNITISGYPKKQETFARISGYCEQNDIHSPQ---VTVYESLL 922
TL +L G Y G I + G P + +S + + Q V + ++ L
Sbjct: 382 TLASLLMGY----YPLTEGEIRLDGRP-----LSSLSHSVLRQGVAMVQQDPVVLADTFL 432
Query: 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL-------VGLPGVNGLSTEQRKRL 975
A + L ++ + + + +E V+L L ++L +G G N LS Q++ L
Sbjct: 433 --ANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQKQLL 485
Query: 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1035
+A LV P I+ +DE T+ +D+ + + + V T+V H+ S I EA D
Sbjct: 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-D 542
Query: 1036 ELFLLKRG 1043
+ +L RG
Sbjct: 543 TILVLHRG 550
|
Length = 592 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 51/247 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF---V 224
IL +S I+ T ++G SGK+TL L G + G + NG ++ +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
++ Y+ Q + +I ++ E L A+ + + A IK D ++
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
TE E ISGGQ++R+ L+ ++
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL---LQPAPEAYDLFDDIILISD 401
+DE ++ LD+ T +IVN+L T+I + L A ++ D II++
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLNLQD----KTIIFVAHRLSVAKQS----DKIIVLDH 683
Query: 402 GQIVYQG 408
G+I+ QG
Sbjct: 684 GKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 58/271 (21%), Positives = 101/271 (37%), Gaps = 59/271 (21%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L K+ +L VS I G LLG GK+TL L G L+ + G V++ G
Sbjct: 17 LFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFRGQ 73
Query: 219 NMDEFVPQRTAAYISQHDVHI----------GEMTVRETLAFSARCQGVGSRYEMLTELA 268
++ + ++ A+ + DV + MTVR+ + R L E
Sbjct: 74 DLYQLDRKQRRAF--RRDVQLVFQDSPSAVNPRMTVRQIIGEPLR------HLTSLDESE 125
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328
++ + A +L ++GL ++ D++ R +SGG
Sbjct: 126 QKARIA---------------------------ELLDMVGLR--SEDA--DKLPRQLSGG 154
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR---GTTLISLLQP 385
Q +R+ L + +DE + LD I+ LR+ L+ GT + +
Sbjct: 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK----LQQAFGTAYLFITHD 210
Query: 386 APEAYDLFDDIILISDGQIVYQGPREHVLEF 416
+ ++ GQIV + +L F
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 832 LRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTT----LMDVLAGRKTTGYVTGNIT 887
L+ +D +V+ ++S RPG L+G +G+GK+T L+ ++ + G I
Sbjct: 292 LKRTVDHNVVV-KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIW 343
Query: 888 ISGYPKKQETFARISGYCEQ--------NDIHSPQVTVYESLLYSAWLRL-SPEVDSKTR 938
G P ++ + N +P++ V + + LR+ P + + R
Sbjct: 344 FDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQR 401
Query: 939 KMFIEEVMELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
+ + VME V L+ R P S QR+R+ IA L+ PS+I +DEPTS L
Sbjct: 402 EQQVIAVMEEVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
Query: 998 D 998
D
Sbjct: 457 D 457
|
Length = 529 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 7e-05
Identities = 30/254 (11%), Positives = 71/254 (27%), Gaps = 25/254 (9%)
Query: 1156 NPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQP 1215
L I L FG G + + + V+ + +L +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1216 VVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAM---MQFEWTAA 1272
A+ R + + S ++ F + +PY+ V ++ GL++ + + + +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1273 KFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIW 1332
L + +++ ++ V SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1333 WKWYYWACPLAWTLYGLIASQYGDKEDRLESGETVKHFLRSYFGFKHDFLGVVALVVVAF 1392
+ + PL + + LR + G+ +++
Sbjct: 228 LQGISYINPLTYAI----------------------DALRYVYLGGWRNDGIWISLLILL 265
Query: 1393 PMLFAFVFGLGIKF 1406
F+ +
Sbjct: 266 LFAVVFLLLGLLLL 279
|
Length = 286 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 27/156 (17%)
Query: 853 GVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARISGYCEQNDI- 910
G + L+G +G GKTT++ ++AG K T G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDG---EDVTHRSI----QQRDIC 81
Query: 911 ---HS----PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963
S P +++ E++ Y + P+ + K R ++E +ELV+L V
Sbjct: 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR---VKEALELVDLAGFEDRYV---- 134
Query: 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHN 219
ILKGV+ I+ G + L+GP SGK+TL + G Y G + + G +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-----YEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIH 911
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 912 SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971
E + +L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 972 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1023
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1024 HQPSI----DIFEAFDELFLLKRG 1043
+ + FD +L
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-05
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 860 GVTGAGKTTLMDVLAGRK--TTG--YVTGNITISGYPKKQETFARISGYCEQNDIHSPQV 915
G +G GK+TL+ ++AG + T+G ++ G ++ P + R G Q+ P +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPHL 90
Query: 916 TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL--RQALVGLPGVNGLSTEQRK 973
+V E++ S L+L+ + + +V E+++L L R+ LS QR+
Sbjct: 91 SVAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQ 140
Query: 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
R+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 36/209 (17%)
Query: 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETF 898
RL +L +VS G AL G +GAGK+TL+ L Y+ + I + + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN----YLPDSGRI--LVRHEGAW 73
Query: 899 ARISGYCEQNDIHSPQVTV-YESLLYSAWLRLSPEVDSKTRKMFIEEVME-LVE------ 950
++ + + + T+ Y S +LR+ P V + +E V E L+E
Sbjct: 74 VDLAQASPREVLEVRRKTIGY----VSQFLRVIPRVSA------LEVVAEPLLERGVPRE 123
Query: 951 ---------LNLLR--QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
L L + L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 124 AARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 1000 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028
+V+ + G ++ H +
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR 900
+L + G + AL+G GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 901 ISGY----CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL-VELNLLR 955
Q + P ++V E++L+ L S +KM + + L +L+L
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
A L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1025 QPSI 1028
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISG---YP 892
L +S +TA +G +G GK+TL+ D++ + + G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 893 KKQE--TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
KK + R G Q P+ ++YE+++Y LRL + + + E VE
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRV-------LDEAVE 146
Query: 951 LNLLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
+L AL + GLS Q++RL IA + P ++ +DEPTS LD +
Sbjct: 147 RSLRGAALWDEVKDRLHENAF-GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTL 205
Query: 1004 IV 1005
+
Sbjct: 206 KI 207
|
Length = 272 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 303 ILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQ 362
L++LGL AD + +SGG+R+RV L +DE ++ LD + +
Sbjct: 81 ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 363 IVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408
++ LR+ T ++ L A D +IL+ DG+IV QG
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 57/272 (20%), Positives = 101/272 (37%), Gaps = 67/272 (24%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVT 214
N+ K ++ GVS ++ G + LLGP +GKTT + G K DS G++
Sbjct: 5 NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS-----GKIL 58
Query: 215 YNGHNMDEFVPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
+G ++ + + A Y+ Q ++TV E + +G+ + R
Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------RE 111
Query: 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQR 330
EK + +L+ + + +SGG+R
Sbjct: 112 EKL---------------------------EELLEEFHITHLRKSKAS-----SLSGGER 139
Query: 331 KRVTTGEMLVGPAQAFFM--DEISTGLDSSTTFQIVNSLRQFIHIL--RGTTLISLL--- 383
+RV L F+ DE G+D V +++ I IL RG I +L
Sbjct: 140 RRVEIARALA--TNPKFLLLDEPFAGVDPIA----VQDIQKIIKILKDRG---IGVLITD 190
Query: 384 QPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
E + D +I +G+++ +G E +
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 63/254 (24%), Positives = 97/254 (38%), Gaps = 57/254 (22%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
LS R T + +S + + LLGP +GK+TLL + G L + G + ++GH
Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGH 62
Query: 219 NMDEFVPQRTAAYISQHDVH-IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
++ D+H IG + E+ YE LT AR
Sbjct: 63 PW------------TRKDLHKIGSLI--ESPPL----------YENLT--AREN------ 90
Query: 278 PDPDLDVFMKAAAT-EGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
+K T G S + D +L I+ L S G ++R+
Sbjct: 91 --------LKVHTTLLGLPDSRI-DEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIA 136
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL--RGTTLISLLQPAPEAYDLFD 394
L+ + +DE + GLD + LR+ I +G T+I E L D
Sbjct: 137 IALLNHPKLLILDEPTNGLDPIG----IQELRELIRSFPEQGITVILSSHILSEVQQLAD 192
Query: 395 DIILISDGQIVYQG 408
I +IS+G + YQG
Sbjct: 193 HIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 51/188 (27%)
Query: 276 IKPDPDLDV---FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKR 332
I PD D V A + + T+ I+K L L+ D + + + +SGG+ +R
Sbjct: 410 ISPDYDGTVEDLLRSAIRSAFGSSYFKTE-IVKPLNLE---DLL--ERPVDELSGGELQR 463
Query: 333 VTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392
V L A + +DE S LD + +R+FI T L+ +
Sbjct: 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV-----------V 512
Query: 393 FDDIILI---SDGQIVYQGPREHVLEFFEFMGFKCPERKGVAD-----------FLQE-- 436
DI +I SD IV++G P + G A FL+
Sbjct: 513 DHDIYMIDYVSDRLIVFEGE---------------PGKHGHASPPMSMREGMNRFLKNLG 557
Query: 437 VTSRKDQE 444
VT R+D E
Sbjct: 558 VTFRRDPE 565
|
Length = 591 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+LK +S ++ G LLG SGK+TLL L G L G +T +G + +
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKA 72
Query: 227 RTAAYIS--QHDVHIGEMTVRETL 248
++ IS ++ + T+R L
Sbjct: 73 L-SSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
L+ VS G + L+G GAGKTTL+ L G R T+G + I+ + +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
++ E + S ++TV E+L + + + I+ V EL R+
Sbjct: 81 AVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHERRI-- 132
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1019
+S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++ R
Sbjct: 133 --QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQLREQ 186
Query: 1020 VCTI 1023
TI
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 70/263 (26%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTYNGHNMDE 222
L+ ++ I G+ L+G SGK+T+ LL R Y G + +GH++ +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT---------RFYDIDEGEILLDGHDLRD 409
Query: 223 FVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
+ + A +SQ +VH+ T+ +A++ SR ++ E+AA
Sbjct: 410 YTLASLRNQVALVSQ-NVHLFNDTIANNIAYAR--TEQYSREQI-------EEAA----- 454
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
+ D+I K +D DT++G+ + +SGGQR+R+ L
Sbjct: 455 ---------------RMAYAMDFINK---MDNGLDTVIGENGVL-LSGGQRQRIAIARAL 495
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG--TTLI-----SLLQPAPEAYDL 392
+ + +DE ++ LD+ + I +L + L+ T+L+ S ++ A
Sbjct: 496 LRDSPILILDEATSALDTESERAIQAALDE----LQKNRTSLVIAHRLSTIEKA------ 545
Query: 393 FDDIILISDGQIVYQGPREHVLE 415
D+I+++ DG+IV +G +L
Sbjct: 546 -DEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 38/247 (15%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
+ +LKG+S I G M ++G SGK+TL+ L G LD RV G ++
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA--GQDVATLDA 77
Query: 226 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
A RE F + RY +L+ L AA +++V
Sbjct: 78 DALAQL------------RREHFGF------IFQRYHLLSHLT----AA-----QNVEVP 110
Query: 286 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQA 345
A E ++ + +L+ LGL+ + +SGGQ++RV+ L+ Q
Sbjct: 111 AVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARALMNGGQV 165
Query: 346 FFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
DE + LDS + +++ L Q RG T+I ++ P+ + +I I DG+IV
Sbjct: 166 ILADEPTGALDSHSGEEVMAILHQLRD--RGHTVI-IVTHDPQVAAQAERVIEIRDGEIV 222
Query: 406 YQGPREH 412
P +
Sbjct: 223 RNPPAQE 229
|
Length = 648 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTL-MDVLAGRKTTGYVT-GNITISGYPKKQ 895
D L ++ +S R G L+G +G+GK+TL + +L + G + I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 896 ETFARISGYCEQNDIH----------SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV 945
R + SP++TV ++ P++ + R + E
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 946 MELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+E E+ L P + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LE--EVGLDPATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 61/214 (28%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
IL +S +R G L+ GP GK+TLL +A + + G + + G ++ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPE 77
Query: 227 R---TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP--- 280
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDPAIF 117
Query: 281 --DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
DL+ F L DT++ + I +SGG+++R++
Sbjct: 118 LDDLERF----------------------ALP---DTIL-TKNIAELSGGEKQRISLIRN 151
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIH 372
L + +DEI++ LD S VN + IH
Sbjct: 152 LQFMPKVLLLDEITSALDESNK-HNVNEI---IH 181
|
Length = 225 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L VS G T+++G G+GK+T+ ++ G + +G I + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 903 ---GYCEQNDIHSPQVTVYESLL-YSAWLRLSPEVDSKTRKMFIEEVME-LVELNLLRQA 957
G QN P S++ Y L E + V E L ++++L +A
Sbjct: 83 KHIGIVFQN----PDNQFVGSIVKYDVAFGL--ENHAVPYDEMHRRVSEALKQVDMLERA 136
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTG 1016
P N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 137 -DYEP--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193
Query: 1017 RTVVCTIHQPSIDIFEAF--DELFLLKRG 1043
T++ H D+ EA D + ++ +G
Sbjct: 194 ITIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 65/203 (32%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISG 903
N V+ G LT + G G+GK+T++D G G A
Sbjct: 14 NDVTFG--EGSLTIITGPNGSGKSTILD------AIGLALG----------GAQSATRRR 55
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963
+ V+ EL R
Sbjct: 56 SGVKAGCIVAAVSA--------------------------------ELIFTRL------- 76
Query: 964 VNGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1019
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 77 --QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1020 VCTIHQPSIDIFEAFDELFLLKR 1042
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 66/290 (22%), Positives = 97/290 (33%), Gaps = 85/290 (29%)
Query: 174 GIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYIS 233
G I + +LGP GKTT + LAG L D + T +Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------------EGDIEIELDTVSYKP 67
Query: 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEG 293
Q+ E TVR+ L S+ + + TE
Sbjct: 68 QYIKADYEGTVRDLL--SSITKDFYTHPYFKTE--------------------------- 98
Query: 294 QEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353
I K L ++ D V + +SGG+ +RV L A + +DE S
Sbjct: 99 ---------IAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSA 144
Query: 354 GLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI---SDGQIVYQG-P 409
LD +R+F T + + DII+I +D IV++G P
Sbjct: 145 YLDVEQRLMASKVIRRFAENNEKTAFV-----------VEHDIIMIDYLADRLIVFEGEP 193
Query: 410 REHVLEFFEFMGFKCPE---RKGVADFLQE--VTSRKDQEQY--WANKEE 452
+ G P R G+ FL+ +T R+D E NK
Sbjct: 194 SVN--------GVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRINKLG 235
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 39/180 (21%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARI 901
+ VS R G + + G+ G G+T L + L G R G IT+ G P + +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRDA 72
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELVELNLLRQALVG 960
A + PE D K + ++ V E + L+ L
Sbjct: 73 ---------------------IRAGIAYVPE-DRKREGLVLDLSVAENIALSSL------ 104
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 105 LSGGN-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
++ VS G + AL+G +G GK+TL+ +LAG + G I + G + +
Sbjct: 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDG-----VDLSHVP 87
Query: 903 GYCEQNDIHS--------PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL 954
Y Q I+ P +TV +++ + P+ + +R + E++ LV +
Sbjct: 88 PY--QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEF 142
Query: 955 --RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
R+ + LS QR+R+ +A L P ++ +DEP LD + + V +
Sbjct: 143 AKRKP-------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195
Query: 1013 VD-TGRTVVCTIHQPSIDIFEAFD---ELFLLKRGG-------QEIYVGPLGRHSSHLI- 1060
++ G T V H D EA + ++ RG +EIY P R+S+ I
Sbjct: 196 LERVGVTCVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251
Query: 1061 --KYFEG 1065
FEG
Sbjct: 252 SVNVFEG 258
|
Length = 377 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR--ISGYCEQN 908
G A++G +GAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 909 DIHSPQVTVYE--SLLYSAWLRLSPE----VDSKTRKMFIEEVMELVELNLLRQALVGLP 962
++ +TV + L + L+L+ + + R+M IE+++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 60/188 (31%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKKQ 895
+ + F +TAL+G +G+GK+T + D + + VTG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR----VTGQILYRGI---- 87
Query: 896 ETFARISGYCEQNDIHSPQVTVYE--SLLYSAWLRLSP-------------EVDSKTRKM 940
DI+ ++ VYE + + R +P E K
Sbjct: 88 -------------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKK 134
Query: 941 FIEEVMEL----------VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990
++E++E V+ +L + AL LS Q++RL IA + P I+ M
Sbjct: 135 VLDEIVETSLKQAALWDQVKDDLHKSALT-------LSGGQQQRLCIARAIAVKPDILLM 187
Query: 991 DEPTSGLD 998
DEP S LD
Sbjct: 188 DEPASALD 195
|
Length = 267 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 56/250 (22%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL--LALAGKLDSSLRLYGRVTYN 216
+S + IL ++ I G+M ++G SGK+TLL + L K DS G+V N
Sbjct: 4 ISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS-----GQVYLN 58
Query: 217 GHNMDEFVPQR-------TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
G ++ Y+ Q+ I TV E L +G +Y+ L++ +
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD-------LGLKYKKLSKKEK 111
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329
REK K L+ +GL++ + + +SGG+
Sbjct: 112 REK-------------KK--------------EALEKVGLNLKLKQKIYE-----LSGGE 139
Query: 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389
++RV ++ P DE + LD ++++ L + G T+I ++ PE
Sbjct: 140 QQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND--EGKTII-IVTHDPEV 196
Query: 390 YDLFDDIILI 399
D +I +
Sbjct: 197 AKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 63/249 (25%)
Query: 178 PGR-MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM-----DEFVP--QRTA 229
P R +T L GP SGKT+L+ +AG GR+ NG + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 230 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAA 289
Y+ Q TVR L +
Sbjct: 79 GYVFQDARLFPHYTVRGNLRY-----------------------------------GMWK 103
Query: 290 ATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMD 349
+ Q D ++ +LG++ D G +SGG+++RV G L+ + MD
Sbjct: 104 SMRAQ-----FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMD 153
Query: 350 EISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL---QPAPEAYDLFDDIILISDGQIVY 406
E LD +I+ ++ LR I +L E L D ++++ +G++
Sbjct: 154 EPLASLDLPRKREIL----PYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209
Query: 407 QGPREHVLE 415
GP E V
Sbjct: 210 SGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 59/277 (21%), Positives = 108/277 (38%), Gaps = 60/277 (21%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF----- 223
+ S + G + +++G SGK+TL+ L ++ + G + +G ++ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR---GEILVDGKDIAKLSAAEL 100
Query: 224 --VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERAL------- 146
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
L+++GL+ AD + +SGG ++RV L
Sbjct: 147 --------------------EALELVGLEGYADKYPNE-----LSGGMQQRVGLARALAN 181
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401
MDE + LD ++ + L + L+ T++ + EA + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAIMKD 240
Query: 402 GQIVYQG-PREHVLEFFEFMGFKCPERKGVADFLQEV 437
G+IV G P E +L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 41/215 (19%)
Query: 154 NSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYG 211
+LN+ K+ L ++ I ++T L+GP GK+T L L L S++++ G
Sbjct: 8 KNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG 64
Query: 212 RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
V +G N I DV + E+ R + F S Y+ +A
Sbjct: 65 EVLLDGKN------------IYDKDVDVVELRKRVGMVFQKPNPFPMSIYD---NVAYGP 109
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR---GISGG 328
+ GIK +LD ++ A ++A++ + V D++ + +SGG
Sbjct: 110 RIHGIKDKKELDKIVEWAL---KKAALWDE---------------VKDDLKKSALKLSGG 151
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQI 363
Q++R+ + MDE ++ LD +T +I
Sbjct: 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQET 897
+LN++S + R G + G +G GK+TL+ ++A + +G + G K E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEI 78
Query: 898 FARISGYCEQNDIHSPQV---TVYESLLYSAWLR-LSPEVDSKTRKMFIEEVMEL-VELN 952
+ + YC Q +P + TVY++L++ +R P+ +F++++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+L + + LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTK------NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 57/178 (32%)
Query: 829 EMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNIT 887
+ + ++ VS + + G L+G +G GK+TL ++ G + T G I
Sbjct: 15 PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEIL 71
Query: 888 ISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
G K T E V+E
Sbjct: 72 FEG---KDITKLSKEER-------------------------------------RERVLE 91
Query: 948 LVELNLLRQALVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 999
L+E VGLP LS QR+R+ IA L NP +I DEP S LD
Sbjct: 92 LLEK-------VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 855 LTALMGVTGAGKTTLM-------DVLAGRKTTG--YVTGNITISGYPKKQETFARISGYC 905
+TA +G +G GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 906 EQNDIHSP-QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME--LVELNLLRQALVGLP 962
++ +P ++++++++ Y P + + +E+++E L L + L
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 963 GV-NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
N LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 855 LTALMGVTGAGKTTLM-------DVLAGRKTTGYVT-GNITISGYPKKQETFARISGYCE 906
+TA++G +G GK+T + D++ TTG + I G + + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 907 QNDIHSPQVTVYESLLYSAWL-------RLSPEVDSKTRKMFI-EEVMELVELNLLRQAL 958
Q P+ ++++++ Y L +L V+ RK + +EV + ++ N L
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 60/244 (24%)
Query: 182 TLLLGPPASGKTTLLLALAGKLDSSLRLY-GRVTYNGHNMDE-----FVP--QRTAAYIS 233
T + G SGKTTL+ +AG R G + NG + + F+P +R Y+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLT----RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81
Query: 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEG 293
Q ++VR L RY M +R
Sbjct: 82 QEARLFPHLSVRGNL-----------RYGM-----KR--------------------ARP 105
Query: 294 QEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353
E + + ++++LG+ + G +SGG+++RV G L+ + MDE
Sbjct: 106 SERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLA 160
Query: 354 GLDSSTTFQIVNSLRQFIHILRGTTLISLL---QPAPEAYDLFDDIILISDGQIVYQGPR 410
LD ++I+ L + L I +L E L D ++++ DG++ GP
Sbjct: 161 ALDDPRKYEILPYLER----LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI 216
Query: 411 EHVL 414
V
Sbjct: 217 AEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 58/267 (21%), Positives = 93/267 (34%), Gaps = 78/267 (29%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
T L +SG +R G + L+GP +GK+TLL +AG S G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSAT 68
Query: 227 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG--QRKRVTTGEMLVG 341
K + + L LD D + +SGG QR R+ + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 342 P-----AQAFFMDEISTGLDSSTTFQIVNSLRQFIH---------ILRGTTLISLLQPAP 387
P Q +DE LD + ++L + + ++ L L+ A
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQ----SALDRLLSALCQQGLAIVMSSHDLNHTLRHAH 200
Query: 388 EAYDLFDDIILISDGQIVYQGPREHVL 414
A+ L+ G+++ G RE VL
Sbjct: 201 RAW-------LLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 844 NSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP----------K 893
+S + G + G+ G+G+T LM+ L G G I ++G K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVK 337
Query: 894 KQETFA----RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV 949
K + R +G+ I + + + SL + + E EL+
Sbjct: 338 KGMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396
Query: 950 ELNL--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1007
L + Q + L G N Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 397 ALKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
Query: 1008 TVRNTVDTGRTVV 1020
+R D G+ ++
Sbjct: 451 VMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 32/211 (15%)
Query: 832 LRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG- 890
L +++ +L ++ + G + A+MG G+GK+TL V+AG + G+I G
Sbjct: 13 LHASVNENEILKG-LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE 71
Query: 891 --YPKKQETFARISGYCE-QNDIHSPQVTVYESLLYSAWLRLS----------PEVDSKT 937
+ E A + + Q I P V+ + +LRL+ PE+D
Sbjct: 72 SILDLEPEERAHLGIFLAFQYPIEIPGVS------NADFLRLAYNSKRKFQGLPELDPLE 125
Query: 938 RKMFIEEVMELVELN---LLRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEP 993
I E ++LV ++ L R VN G S ++KR I + + + +DE
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRN-------VNEGFSGGEKKRNEILQMALLDSELAILDET 178
Query: 994 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
SGLD A I+ + + + +++ H
Sbjct: 179 DSGLDIDALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 65/283 (22%), Positives = 101/283 (35%), Gaps = 83/283 (29%)
Query: 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY---GRVT 214
IL H ++K +S +RPG L+G SGK+T LAL LRL G +
Sbjct: 291 ILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLAL-------LRLINSQGEIW 343
Query: 215 YNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV--------GSRYEMLTE 266
++G + R+ L R Q V R +L
Sbjct: 344 FDGQPLHNL-------------------NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326
+ L V + +E V+ +++ +GLD E S
Sbjct: 385 IEE-----------GLRVHQPTLSAAQREQQVIA--VMEEVGLDPETRHRYPAEF----S 427
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVN---SLRQ-------FI----H 372
GGQR+R+ L+ +DE ++ LD + QI+ SL+Q FI H
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487
Query: 373 ILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
++R L +I++ G++V QG E V
Sbjct: 488 VVRA---------------LCHQVIVLRQGEVVEQGDCERVFA 515
|
Length = 529 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM-DEFVPQRTAAYISQ 234
I+ G M LLGP GKTT+L +AG L+ G++ +G ++ + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTE--GQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
M++ E + + + GV E +R K A
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-------------------- 120
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
L+++ L D V D+ ISGGQ++RV L+ + DE +
Sbjct: 121 ---------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 355 LDSSTTFQIVNSLRQFIHILR---GTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409
LD++ + S+R+ I L+ T + + EA+ + D +I+++ G+I+ G
Sbjct: 167 LDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 41/254 (16%)
Query: 786 DSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNS 845
+SS + T T + G +P + + + V + D+ V L+
Sbjct: 10 ESSDGLITTTTATDTTDPSG-----DPAASSGETVIEARDL-------NVFYGDEQALDD 57
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLM---DVLAGRKTTGYVTGNITISG---YPKKQETFA 899
VS +TA++G +G GK+T + + + V G +T G Y + A
Sbjct: 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117
Query: 900 --RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R G Q P+ ++Y+++ Y L++ ++ E VE +L R A
Sbjct: 118 LRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYD---------GDIDERVEESLRRAA 165
Query: 958 L-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
L + G++ LS Q++RL IA + +P +I MDEP S LD A + + +
Sbjct: 166 LWDEVKDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224
Query: 1011 NTVDTGRTVVCTIH 1024
+ TVV H
Sbjct: 225 ELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 42/197 (21%)
Query: 826 MPQEMKLRGV--LDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGR 876
M ++K+RGV + +L +++ F +TA++G +G GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 877 KTTGYV--------TGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLY----- 923
+ G V + N+ + K+ G Q P+ ++++++ +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKR-------VGMVFQQPNPFPK-SIFDNVAFGPRML 112
Query: 924 --SAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVEL 981
+A RL V+ R+ + + V+ NL + L LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVEKSLRQ---AALWDEVKDNLHKSGL-------ALSGGQQQRLCIARVL 162
Query: 982 VANPSIIFMDEPTSGLD 998
P +I MDEP S LD
Sbjct: 163 AIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 25/169 (14%)
Query: 855 LTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARIS---GYCEQNDI 910
+TAL+G +G GK+T + + G + I G K + + G Q
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQ-- 87
Query: 911 HSPQV---TVYESLLYSAWLRLSPEVDSK-TRKMFIEEVMELVEL-----NLLRQALVGL 961
P V ++YE++ Y+ +L + +K + + + ++ V L + L+Q + L
Sbjct: 88 --PNVFVKSIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALAL 143
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 144 SG------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 49/258 (18%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--------AGKLDSSLRLYGRVTYNGHN 219
++KGV I + L+GP GK+TLL +++ +RL+GR Y+ +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS-PD 77
Query: 220 MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG-VGSRYEMLTELARREKAAGIKP 278
+D +R + Q+ +T+ + +A + G V S+ EL R + A
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK----KELDERVEWA---- 129
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+K AA + + DY +SGGQR+R+
Sbjct: 130 -------LKKAALWDEVKDRLNDYP-------------------SNLSGGQRQRLVIARA 163
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAP-EAYDLFDDII 397
L + MDE + +D T +I + + L+ I L+ +P +A + D +
Sbjct: 164 LAMKPKILLMDEPTANIDPVGTAKI----EELLFELKKEYTIVLVTHSPAQAARVSDYVA 219
Query: 398 LISDGQIVYQGPREHVLE 415
+ G+++ GP V E
Sbjct: 220 FLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 325 ISGGQRKRVTTGEML-VGPAQAFFMDEISTGLD---SSTTFQIVNSLRQFIHILRGTTLI 380
+SGGQ++RV +L + P F DE ++ LD +I+ LR+ R TLI
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIF-DESTSMLDPKGKREIKKIMVDLRK----TRKKTLI 197
Query: 381 SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL---EFFEFMGFKCPERKGVADFLQEV 437
S+ EA L D +I+ S+G+++ QG + +L E E P ++ L+ +
Sbjct: 198 SITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGI 256
Query: 438 TSRKDQEQ 445
++E+
Sbjct: 257 DPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
+ LVG + LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376
V + + G+SGGQ++RV L +DE ++ LD T ++ L+ + G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS-LQAQLG 151
Query: 377 TTLISLLQPAPEAYDLFDDIILISDGQ 403
T++ + EA L D ++++ DG+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SGGQ++RV L + DE ++ LD +++N++RQ R T++ +
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR--TMVIV 200
Query: 383 LQPAPEAYDLFDDIILISDGQIVYQGP 409
A D+ D I + G+IV QGP
Sbjct: 201 THEMSFARDVADRAIFMDQGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 58/270 (21%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
L G+S I G ++G +GK+TLL A+AG K S G++ +G ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS-----GQILIDGVDVTKKS 74
Query: 225 PQRTAAYISQ--HDVHIG---EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
+ A +++ D G E+T+ E LA A +G R RR
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENLAL-AESRG-KKRGLSSALNERR--------- 123
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
F + A G LGL+ +G +SGGQR+ ++
Sbjct: 124 --RSSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMAT 163
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI---SLLQPAPEAYDLFDDI 396
+ P + +DE + LD T ++ + + + TTL+ ++ A D + +
Sbjct: 164 LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRL 219
Query: 397 ILISDGQIV--YQGPR------EHVLEFFE 418
I++ G+IV G +++ FE
Sbjct: 220 IMLHSGKIVLDVTGEEKASLTVLDLIQMFE 249
|
Length = 263 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 29/170 (17%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQETFARI 901
L G G + ++G G GKTT + +LAG K ++ +S P+
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP---- 412
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLLRQALVG 960
TV + L + S F E+++ + L +LL +
Sbjct: 413 ----------DYDGTVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERP--- 452
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
V+ LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 453 ---VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 42/270 (15%)
Query: 158 ILSSRKKHI-----TILKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLY 210
I++S H+ LKG+ +T L+GP GK+T L L L + +
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 211 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
G V+ G N+ + P + + +G M ++ F S YE + R
Sbjct: 65 GNVSLRGQNI--YAPNEDVVQLRK---QVG-MVFQQPNPFPF------SIYENVIYGLR- 111
Query: 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQR 330
AG+K D V +A T ++A++ + + E +SGGQ+
Sbjct: 112 --LAGVK---DKAVLDEAVETSLKQAAIWDEVKDHL------------HESALSLSGGQQ 154
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVN---SLRQFIHILRGTTLISLLQPAP 387
+RV +L +DE ++ LD ++ QI N LR I+ T +
Sbjct: 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRIS 214
Query: 388 E--AYDLFDDIILISDGQIVYQGPREHVLE 415
+ A+ L ++I +D + ++ P+E E
Sbjct: 215 DKTAFFLTGNLIEFADTKQMFLNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 44/235 (18%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQ 234
+ G +LGP +GK+TLL +AG L + G +T NG + P +R + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
+ +TV + + G+ P L+ +
Sbjct: 79 ENNLFSHLTVAQNIGL------------------------GLNPGLKLNAAQREKLHA-- 112
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
I + +G++ + G +SGGQR+RV LV +DE +
Sbjct: 113 --------IARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409
LD + +++ + Q + R TL+ + +A + ++++DG+I + GP
Sbjct: 160 LDPALRQEMLTLVSQ-VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 958 LVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
LVGL LS Q++R+ +A L P + DEPT+GLD + ++ N
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 1012 TVDTGRTVVCTIH 1024
G+T++ H
Sbjct: 211 LNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV--LAGRKTTGYV-TGNITISGYPK 893
+ LN+VS G + ++G +GAGK+TL+ L R T+G V ++
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN 74
Query: 894 KQETFAR--ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL 951
+ T AR I + ++ S + TV+ ++ L +P+ + K + + E++ LV L
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEIKRK---VTELLALVGL 130
Query: 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+ P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 131 GDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 6e-04
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTT-LIS- 381
SGG ++R+ + L+ + +DE ++GLD + + + L+ G T L+S
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPES----RREFWELLRELKKEGKTILLSS 152
Query: 382 -LLQPAPEAYDLFDDIILISDGQI 404
+L+ EA L D + ++++G+I
Sbjct: 153 HILE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 63/264 (23%), Positives = 100/264 (37%), Gaps = 74/264 (28%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEF 223
+ L GVS +RPG + LLG +GK+TL+ L+G DS G + +G +
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS-----GEILIDGKPVAFS 75
Query: 224 VPQRTAAY----ISQHDVHIGEMTVRETLAFS---ARCQGVGSRYEMLTELARREKAAGI 276
P+ A + Q + ++V E + R G+ R M R +A +
Sbjct: 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL 129
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
L LGLD+ DT+VGD +S QR+ V
Sbjct: 130 ---------------------------LARLGLDIDPDTLVGD-----LSIAQRQMVEIA 157
Query: 337 EMLVGPAQAFFMDEISTGLDSSTT---FQIVNSLRQ------FI-HILRGTTLISLLQPA 386
L A+ +DE + L T F ++ L+ +I H L
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL------------ 205
Query: 387 PEAYDLFDDIILISDGQIVYQGPR 410
E +++ D I ++ DG++V P
Sbjct: 206 DEVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 22/198 (11%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE 896
+ + VS R G + + GV G G++ L++ ++G + +G I ++G
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGR 325
Query: 897 TFARIS-----GYCEQNDIH---SPQVTVYESLLYSAWLRLSPEVDSKTRKMFI--EEVM 946
R Y ++ +++ E+L+ P R F+ +
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFS----RGGFLDRRAIR 380
Query: 947 ELVELNLLRQALVGLPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
+ L+ + V P LS +++L +A EL P ++ +PT GLD A
Sbjct: 381 KFAR-ELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Query: 1003 AIVMRTVRNTVDTGRTVV 1020
+ + D G+ V+
Sbjct: 440 EFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
LKGV+ I+ G L+G GK+TLL ++G + G V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 229 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKA 288
+ Q+ + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 289 AATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFM 348
+ + + ++GL AD G +SGG ++RV L + +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 349 DEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
DE LD+ T + L Q I T++ + EA L D ++++++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
+L+ +S P ++G TGAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAK------ 1302
Query: 902 SGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLLRQAL 958
G + + S PQ V L+S +R + + S+ + E +E + +++ +
Sbjct: 1303 FGLTDLRRVLSIIPQSPV----LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNP 1358
Query: 959 VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1359 FGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
L V+ RPG + L G +GAGK+TL+ ++ G R + G + I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R G Q+ TVY+++ + + D + R L ++ LL +A
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS-----AALDKVGLLDKA- 131
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
P LS +++R+ IA +V P+++ DEPT LD + ++R G T
Sbjct: 132 KNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189
Query: 1019 VVCTIH 1024
V+ H
Sbjct: 190 VLMATH 195
|
Length = 222 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-04
Identities = 55/205 (26%), Positives = 81/205 (39%), Gaps = 57/205 (27%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFAR 900
VLL VS + G LT ++G TG+GK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 901 ISGYCEQNDIHSPQVTVYESLLY---SAWLRLSPEVDSKTRK---MFIEE---------- 944
Q +I +V S+ Y AW+ +++ R F EE
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 945 VMEL-VELNLLRQAL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
V +L +L L L +G GVN LS Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGGGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816
Query: 1001 AAAIVMRTVRNTVDTGRTVVCTIHQ 1025
V+ G+T V HQ
Sbjct: 817 VGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L +++ + G ++G G+GK+TL L G R G V + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 901 ISGYCEQNDIHSPQV-----TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955
+ G QN P+ TV E L + P ++ + R ++ + + L R
Sbjct: 78 LVGIVFQN----PETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYR 130
Query: 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
LS Q + + +A L P + DE TS LD + V+ ++ +
Sbjct: 131 HR-----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
G+T+V H +++ D + ++ RG
Sbjct: 186 GKTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 7e-04
Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 46/255 (18%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEFV 224
T+L VS +T L+GP SGKTT L L D S R G V G ++ +
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY- 93
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR-----YEMLTELARREKAAGIKPD 279
R+ L F R + R ++ + +A + P
Sbjct: 94 --------------------RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
+ +A TE +GL + D R +SGGQ++ + L
Sbjct: 134 KEFRGVAQARLTE--------------VGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTL 178
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
+ +DE ++ LD +TT +I +R L T+I + +A + D L
Sbjct: 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL---TVIIVTHNLAQAARISDRAALF 235
Query: 400 SDGQIVYQGPREHVL 414
DG++V +GP E +
Sbjct: 236 FDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 64/240 (26%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
L +V+ +PG + + G TG+GK+TL+ ++ Q F
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI---------------------QRHFDVSE 369
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWL-RLSPEVDSKTRKMF-------------------I 942
G +DI ++ + +W RL+ V S+T +F I
Sbjct: 370 GDIRFHDIPLTKLQL------DSWRSRLA--VVSQTPFLFSDTVANNIALGRPDATQQEI 421
Query: 943 EEVMEL--VELNLLR-----QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 995
E V L V ++LR VG GV LS Q++R++IA L+ N I+ +D+ S
Sbjct: 422 EHVARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALS 480
Query: 996 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRH 1055
+D R ++ +R + GRTV+ + H+ S + EA E+ +++ G + G H
Sbjct: 481 AVDGRTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH----IAQRGNH 533
|
Length = 569 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISG----------- 890
L++V+ G L+G TG+GK+TL+ L G K T +G I I G
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 891 -----------YPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSK 936
YP+ Q ET + + N L LS E + +
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN------------------LGLSEE-EIE 120
Query: 937 TRKMFIEEVMELVELN---LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 993
R ++ M +V L+ ++ L G Q++R+ IA + P I+ +DEP
Sbjct: 121 NR---VKRAMNIVGLDYEDYKDKSPFELSG------GQKRRVAIAGVVAMEPKILILDEP 171
Query: 994 TSGLDARA 1001
T+GLD +
Sbjct: 172 TAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 0.001
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI---- 380
+SGGQR+R+ L+ +DE ++ LD T I+ +LR +G T+I
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAH 153
Query: 381 --SLLQPAPEAYDLFDDIILISDGQ 403
S ++ D II++ DG+
Sbjct: 154 RLSTIR-------DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM----DEFVPQRTAAY 231
+ G + + GP +GKT+LL LAG L + G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAG-L--ARPDAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269
+ E+T E L F R G G + LA+
Sbjct: 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 32/220 (14%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK--KQ 895
D +L VS +TA++G +G GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL---NRMNELESEVRVEGRVEFFNQ 74
Query: 896 ETFAR---ISGYCEQNDIHSPQ-----VTVYESLLYS----AW---LRLSPEVDSKTRKM 940
+ R ++ Q + P+ ++VY+++ Y W L + V+S +
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD- 133
Query: 941 FIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
++ + ++ + + AL LS Q++RL IA L P ++ MDEP GLD
Sbjct: 134 --ADLWDEIKHKIHKSAL-------DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 1001 AAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1038
A+ V +++ + + T+V H + F F
Sbjct: 185 ASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 26/196 (13%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLM---DVLAGRKTTGYVTGNITISGYPKKQET 897
+L+++ G + ++G +G+GK+TL+ + L + + + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 898 FARI-SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ 956
R +G Q P +T E++++ + R EE + LL +
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGP---------LRVRGASKEEAEKQAR-ELLAK 123
Query: 957 ALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
VGL P + LS Q++R+ IA L P ++ DEPTS LD V++ +
Sbjct: 124 --VGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179
Query: 1010 RNTVDTGRTVVCTIHQ 1025
++ + G T+V H+
Sbjct: 180 QDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 36/217 (16%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
++G+S I ++T ++GP GK+T + L +L+ +++ G V + G N
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN------- 75
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
I ++I + + + F S YE +A + + P DLD +
Sbjct: 76 -----IYDPRININRLRRQIGMVFQRPNPFPMSIYE---NVAYGVRISAKLPQADLDEIV 127
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346
++A V D + ++ G+SGGQ++R+ L +
Sbjct: 128 ESALKGAALWQEVKDKL---------------NKSALGLSGGQQQRLCIARALAIKPKVL 172
Query: 347 FMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL 383
MDE + LD T ++ + IH LR I+++
Sbjct: 173 LMDEPCSALDPIATMKV----EELIHSLRSELTIAIV 205
|
Length = 259 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 34/169 (20%)
Query: 855 LTALMGVTGAGKTTLM-------DVLAGRKTTGYV-----TGNITISGYPKKQETFARIS 902
+TAL+G +G GK+T + D+ G G + NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV--- 959
++ + P+ +++E++ Y +R R+ +EE +E N LR A +
Sbjct: 103 MVFQKPNPF-PK-SIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWDE 150
Query: 960 -----GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
G N LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 151 VKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 856 TALMGVTGAGKTTLMDVLAG--RKTTGYVTGN--------ITISGYPKKQETFARISGYC 905
TA+ G +GAGKT+L++ ++G R G + N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965
Q+ P V +L Y + F ++++ L+ + L L PG
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG-- 127
Query: 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGY 904
+S R G A++G G+GK+TL +LAG +G + I +P ++ S
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 905 CE---QNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
Q+ S S + LRL+ +++ + R+ I E + V LL
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASYY 146
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 147 P--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 58/298 (19%)
Query: 752 LGVGALLGFIILFNIGFA-LALSFLNWSADDIRRRDSSSQSLE-------TITEANQPKR 803
L VG ++ FI GFA L + L+ + I + + LE ++ + +P
Sbjct: 270 LSVGEVIAFI-----GFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD 324
Query: 804 RGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTG 863
LP ++ F +T+ + + GV D VS + G A++G TG
Sbjct: 325 APE-LPNVKGAVEFRHITF--EFANSSQ--GVFD--------VSFEAKAGQTVAIVGPTG 371
Query: 864 AGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESL-L 922
AGKTTL+++L ++ G I I G T + + TV++ L
Sbjct: 372 AGKTTLINLL--QRVYDPTVGQILIDGIDINTVT---------RESLRKSIATVFQDAGL 420
Query: 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ----------ALVGLPGVNGLSTEQR 972
++ +R + + + EEV E + LVG G N LS +R
Sbjct: 421 FNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNGYDTLVGERG-NRLSGGER 477
Query: 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPS 1027
+RL IA ++ N I+ +DE TS LD A V+N +D RT H+ S
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 53/198 (26%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDI 910
R G + + G+ GAG+T L L G +G I + G + I
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDG---------------KPVRI 325
Query: 911 HSPQ---------VT-------------VYESLLYSAWLRLSPE--VDSKTRKMFIEEVM 946
SP+ V + E++ ++ R S +D + + E +
Sbjct: 326 RSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYI 385
Query: 947 ELVELNL----LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
L + Q + L G N Q+K + +A L +P ++ +DEPT G+D A
Sbjct: 386 R--RLRIKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGIDVGAK 437
Query: 1003 AIVMRTVRNTVDTGRTVV 1020
A + R +R G+ ++
Sbjct: 438 AEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 59/269 (21%), Positives = 91/269 (33%), Gaps = 79/269 (29%)
Query: 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYN 216
N+ +LK +S I G ++GP +GK+TLL LAG+L L G V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV- 381
Query: 217 GHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
G + Y QH R+ L
Sbjct: 382 GETVK-------IGYFDQH---------RDEL---------------------------- 397
Query: 277 KPDPDLDVF--MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM---IRGISGGQRK 331
DPD V + +G E V L G G++ + +SGG++
Sbjct: 398 --DPDKTVLEELSEGFPDGDEQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKA 446
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-----SLLQPA 386
R+ ++L+ P +DE + LD + + +L F GT L+ L
Sbjct: 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLD-- 500
Query: 387 PEAYDLFDDIILISDGQIVYQGPREHVLE 415
+ I L+ D ++G E LE
Sbjct: 501 ----RVATRIWLVEDKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 57/269 (21%), Positives = 101/269 (37%), Gaps = 48/269 (17%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKLD---SSLRLYGRVTYNGHNMDEFVPQRTAAYI 232
++ G T L+G SGK+TLL L G L + + V + E P R +
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88
Query: 233 SQH--DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAA 290
+ + E TV + +AF + G+ + + A + + G+ + F + +
Sbjct: 89 VFQFPESQLFEETVLKDVAFGPQNFGI-PKEKAEKIAAEKLEMVGLADE-----FWEKSP 142
Query: 291 TEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDE 350
E +SGGQ +RV +L + +DE
Sbjct: 143 FE--------------------------------LSGGQMRRVAIAGILAMEPEVLVLDE 170
Query: 351 ISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPR 410
+ GLD +++ L + IH G T++ + + D D + L+ G I+ G
Sbjct: 171 PTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
Query: 411 EHVLEFFEFMG---FKCPERKGVADFLQE 436
V + +F+ P+ AD LQ+
Sbjct: 229 SDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
L ++ I R+T L+GP GK+TLL L R+ G + YNG N+ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD---- 77
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
+ A + IG M + F S YE +A + G K LD +
Sbjct: 78 -SGADVVALRRKIG-MVFQRPNPFPK------SIYE---NVAYGPRIHGEKNKKTLDTIV 126
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML-VGPAQA 345
+ + V D + + +SGGQ++R+ L V P +
Sbjct: 127 EKSLKGAALWDEVKDRL---------------HDSALSLSGGQQQRLCIARTLAVNP-EV 170
Query: 346 FFMDEISTGLDSSTTFQIVN 365
MDE + LD T +I +
Sbjct: 171 ILMDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-------RKTTGYVTGNITIS 889
D + LN +S + G TAL+G G+GK+T+ ++ G + IT+
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK------ITVD 70
Query: 890 GYPKKQETFARIS---GYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV 945
G +T I G QN D TV + + + R P E+
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPR----------PEM 120
Query: 946 MELVELNLLRQALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
+++V ++L VG+ P LS Q++R+ IA L P II +DE TS LD
Sbjct: 121 IKIVR-DVLAD--VGMLDYIDSEPA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 999 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEA--FDELFLLKRG 1043
+++ +R TV+ H DI EA D++ +L G
Sbjct: 176 PAGKEQILKLIRKLKKKNNLTVISITH----DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D++ R SGG ++R+ LV + FMDE + GLD S ++++ LR + L G
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLA 201
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
+I + A L ++++ G++V G + VL+
Sbjct: 202 VIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHN 219
+LKG+S + G + +++GP SGK+TLL L G + DS G +T +G +
Sbjct: 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS-----GSITVDGED 65
|
Length = 240 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 51/254 (20%), Positives = 99/254 (38%), Gaps = 53/254 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG---HNMDEFV 224
ILK +S G + ++GP +GK+TL+ + +D + G + +G +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
E +V +Y L I+GL+ T ++ +SGG+ +RV+ L +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404
+DE ++ LD ++T +I+ L + T+I + +A + D ++ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 405 VYQGPREHVLEFFE 418
V +FF
Sbjct: 211 VEYA---KTYDFFT 221
|
Length = 241 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
+ +DV+YS +L D +S + T ++G++G+GK+TL +L
Sbjct: 473 DIVINDVSYSYGYGSN-----ILSD-------ISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 874 AGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQV---TVYESLLYSAWL 927
G +G I ++G+ K T + Y Q P + ++ E+LL A
Sbjct: 521 VGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGA-- 572
Query: 928 RLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE-----------QRKRLT 976
+ +E+ E+ ++ + +P G TE Q++R+
Sbjct: 573 ---------KENVSQDEIWAACEIAEIKDDIENMP--LGYQTELSEEGSSISGGQKQRIA 621
Query: 977 IAVELVANPSIIFMDEPTSGLD 998
+A L+ + ++ +DE TS LD
Sbjct: 622 LARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 49/191 (25%)
Query: 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARISGY 904
+S R G + L GV GAG+T L + L G R G G I ++G I+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNG--------KEINAL 330
Query: 905 CEQNDIHSPQVTVYE------------------SLLY---SAWLRLSPE---VDSKTRKM 940
+ V + E +L + W++ + E ++ R +
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL 390
Query: 941 FIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
I+ N QA L G N Q+K L IA L A+P ++ +DEPT G+D
Sbjct: 391 NIK-------FNHAEQAARTLSGGN-----QQKVL-IAKCLEASPQLLIVDEPTRGVDVS 437
Query: 1001 AAAIVMRTVRN 1011
A + + +R+
Sbjct: 438 ARNDIYQLIRS 448
|
Length = 510 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQ----------FI-HIL 374
SGGQR+R+ L+ + +DE ++ LD S Q+++ LR FI H L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 375 RGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
+ +I++ DG+IV QGP E V
Sbjct: 488 AVVRALC------------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAY 231
VS + G+ ++GP +GKTTL+ N+ + V T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLI----------------------NLLQRVYDPTVGQ 391
Query: 232 ISQHDVHIGEMTVRETL--AFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAA 289
I + I +T RE+L + + Q G L + RE + + +AA
Sbjct: 392 ILIDGIDINTVT-RESLRKSIATVFQDAG-----LFNRSIRENIRLGREGATDEEVYEAA 445
Query: 290 ATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMD 349
+A+ D+ILK DT+VG+ R +SGG+R+R+ ++ A +D
Sbjct: 446 -----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVLD 496
Query: 350 EISTGLDSSTTFQI---VNSLRQ 369
E ++ LD T ++ +++LR+
Sbjct: 497 EATSALDVETEARVKNAIDALRK 519
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 858 LMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY---------PKKQETFARISGYCEQN 908
L+G +GAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968
P +TV ++L+ A R V ++ + +L L LR LS
Sbjct: 91 YNLWPHLTVQQNLI-EAPCR----VLGLSKDQALARAEKL--LERLRLKPYADRFPLHLS 143
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1025
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQET 897
+ +L + +S +F PG ++G+ GAGK+TL+ ++AG +G +
Sbjct: 17 KKEILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARPAPG 67
Query: 898 FARISGYCEQNDIHSPQVTVYESL------LYSAWLRLS------PEVDSKTRKMFIEEV 945
GY Q P TV E++ + A R + E D+ + + E
Sbjct: 68 IKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL-LAEQ 124
Query: 946 MELVEL-------NLLRQ------ALVGLPG---VNGLSTEQRKRLTIAVELVANPSIIF 989
EL E+ +L R+ AL P V LS +R+R+ + L++ P ++
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLL 184
Query: 990 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
+DEPT+ LDA + A + + ++ G TVV H
Sbjct: 185 LDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRV 213
V G++ G +TLL G P +GK+TL L LA + + G
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPF 67
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 60/246 (24%), Positives = 94/246 (38%), Gaps = 71/246 (28%)
Query: 176 IRPGRMTLLLGPPASGKTTLLLALAGKL----DSSLRLYGRVTYNGHNMDEFVPQRTAAY 231
+ G + ++G GKT+L+ A+ G+L D+S+ + G V Y VPQ
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAY--------VPQ----- 686
Query: 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP-DPDLDVFMKAAA 290
+S I TVR+ + F GS ++ R E+A + DLD+
Sbjct: 687 VSW----IFNATVRDNILF-------GSPFDP----ERYERAIDVTALQHDLDLLPGGDL 731
Query: 291 TEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDE 350
TE E V ISGGQ++RV+ + + + D+
Sbjct: 732 TEIGERGV-------------------------NISGGQKQRVSMARAVYSNSDVYIFDD 766
Query: 351 ISTGLDSSTTFQIVNS-----LRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405
+ LD+ Q+ + LR +L L L Q D IIL+ +G I
Sbjct: 767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ--------VDRIILVHEGMIK 818
Query: 406 YQGPRE 411
+G E
Sbjct: 819 EEGTYE 824
|
Length = 1622 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 60/218 (27%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH----NMDEFV 224
L +S + PG + +L+GP +GKTTL+ + GK G V ++G + E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPEH- 76
Query: 225 PQRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
I++ IG +TVRE L ELA
Sbjct: 77 ------RIARAG--IGRKFQKPTVFENLTVRENL-----------------ELA------ 105
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
+ D + + A + + D +L +GL D + +S GQ++ +
Sbjct: 106 -LNRDKSVFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLE 157
Query: 335 TGEMLVGPAQAFFMDEISTGL-DSST--TFQIVNSLRQ 369
G +L + +DE G+ D+ T T +++ SL
Sbjct: 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195
|
Length = 249 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384
+SGGQ +++ +L +DE + GLD + Q++ L+ + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-LQTDENKTIILVSH 204
Query: 385 PAPEAYDLFDDIILISDGQIVYQG-PRE 411
E D++I++ +G IV Q P+E
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 55/268 (20%), Positives = 101/268 (37%), Gaps = 60/268 (22%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYN 216
L+ K ++ VS + G + LLGP +GKTT + G + DS G++ +
Sbjct: 10 LAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS-----GKILLD 64
Query: 217 GHNMDEFVPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREK 272
++ + + A Y+ Q ++TV + + R + L + R+E+
Sbjct: 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKEE 119
Query: 273 AAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKR 332
D +L+ + D+ +SGG+R+R
Sbjct: 120 L---------------------------DALLEEFHITHLRDSKAY-----SLSGGERRR 147
Query: 333 VTTGEML-VGPAQAFFM--DEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLL--QPAP 387
V L P F+ DE G+D I ++ I L+ + L+
Sbjct: 148 VEIARALAANPK---FILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLITDHNVR 200
Query: 388 EAYDLFDDIILISDGQIVYQGPREHVLE 415
E D+ D +ISDG+++ +G E ++
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTT 378
D++ R SGG ++R+ LV + FMDE + GLD S ++++ LR + L G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 379 LISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
++ + A L D ++++ GQ+V G + VL+
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY--GRVTYNGHNMDEFV 224
T+L ++ +RPG L+ G +GKT+LL ALAG L + GR++ + F+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-----LWPWGSGRISMPADSALLFL 461
Query: 225 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
PQR Y+ Q T+RE L + P+ D
Sbjct: 462 PQRP--YLPQG-------TLREALCY---------------------------PNAAPDF 485
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG---ISGGQRKRVTTGEMLVG 341
+A +V +L +GL A+ + DE R +SGG+++R+ +L+
Sbjct: 486 ---------SDAELVA--VLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLH 532
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQ------FIHILRGTTLISLLQP 385
+ F+DE ++ LD T ++ L++ I + TL +
Sbjct: 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582
|
Length = 604 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR-KTTGYVTGNITISGYPKKQETFARI 901
L G+ + ++G G GKTT + +LAG K G+I I +
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIEL--------DTV 63
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL--RQALV 959
S Y Q + TV + LL S D T F E+ + +++ + R+
Sbjct: 64 S-YKPQYIKADYEGTVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDRE--- 112
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
V LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 113 ----VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVV 1020
P LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
Query: 1021 CTIHQ 1025
H+
Sbjct: 1414 TIAHR 1418
|
Length = 1466 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 843 LNSVSGAFRPG-VLTALMGVTGAGKTTLMDVLAGR--KTTGYVTGNITISGYPKKQETFA 899
L G G V+ + G G GKTT +LAG G V + IS Y K Q
Sbjct: 355 LEVEGGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ---- 407
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQAL 958
I TV + LL S + ++ S + E+++ ++L LL +
Sbjct: 408 YIKP--------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKN- 450
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
V LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 451 -----VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 38/166 (22%)
Query: 853 GVLTALMGVTGAGKTTLM-------DVLAGRKTTGYV--TGNITISGYPKKQETFARISG 903
G +TAL+G +G GK+T++ D++ G G V G E RI G
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI-G 97
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV---- 959
Q P+ ++YE++ + A R++ + ++ ELVE +L R+A V
Sbjct: 98 MVFQQPNPFPK-SIYENIAFGA--RING---------YTGDMDELVERSL-RKAAVWDEC 144
Query: 960 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
G LS Q++RL IA + P +I MDEP S LD
Sbjct: 145 KDKLNESG----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 947 ELVELNLLRQAL----------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 996
ELVE +L + AL GL LS Q++RL IA + P +I MDEP S
Sbjct: 126 ELVERSLRQAALWDEVKDKLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
Query: 997 LD 998
LD
Sbjct: 182 LD 183
|
Length = 264 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG 201
+L+ VS I PG ++GP SGK+TL + G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG 50
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL 382
R +SGG+++RV L F DE + LD T + N+L + + G +++ L
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV-KASGISMV-L 224
Query: 383 LQPAPEAY-DLFDDIILISDGQIVYQG-PREHVLEFFEFMGFKCPERKGVADFLQEVTSR 440
PE DL D I + +G+I +G P E V F E G E++ + + +
Sbjct: 225 TSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 441 KDQEQYW 447
++ + +
Sbjct: 283 RNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 38/172 (22%)
Query: 855 LTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG---------YPKKQET--FARISG 903
+TA++G +G GK+T + L + G + + G Y + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL----------VELNL 953
Q P +++YE++ Y +R+S +K + ++E++E V+ L
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRIS----AKLPQADLDEIVESALKGAALWQEVKDKL 144
Query: 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
+ AL GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 145 NKSAL-------GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1412 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-251 Score=2313.95 Aligned_cols=1327 Identities=54% Similarity=0.922 Sum_probs=1245.4
Q ss_pred CCchHHhHHHHHhhCCChhhhhhccccCCCCCCcccccCCCChHhhHHHHHHhhcCCCCCHHHHHHHHHHHHhhcCCCCC
Q 000576 37 VDDEEALKWAALEKLPTYNRLRKGLLSTPSGHGNEIDVDNLGLQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMP 116 (1412)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1412)
+||||++||||+|||||++| +.+.+... .++|+.+++..++..+.++....-++|+++++.++++|.+++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 34999999999999999998 55543211 179999999999999999999999999999999999999998 889
Q ss_pred ceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHH
Q 000576 117 EIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL 196 (1412)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 196 (1412)
.++++++++.+++++..| ||+.|...+..+.++...+.. ++....||+|+|+.++||++++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999988765 999999998888776655443 44567899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCC
Q 000576 197 LALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276 (1412)
Q Consensus 197 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~ 276 (1412)
++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||+|+|+++|++++.||+ +..|+|++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998777789999999999999989999999999999999999999999999999999988 555665531
Q ss_pred CCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCC
Q 000576 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLD 356 (1412)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD 356 (1412)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 26899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHh
Q 000576 357 SSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436 (1412)
Q Consensus 357 ~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 436 (1412)
++|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHH
Q 000576 437 VTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLL 516 (1412)
Q Consensus 437 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~ 516 (1412)
+++++++.|+|..+..++.+.++.|+.+.|..++.++++..+++.+.++.+.++.++..++|.+++|+|++.|..|++.+
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCc
Q 000576 517 MKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFY 596 (1412)
Q Consensus 517 ~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y 596 (1412)
++||.+.+.++.++.+++|+++|++|+++++ ++..++..+.|++||++++.++++++|+.+++.++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999985 55567788999999999999999999999999999999999999999
Q ss_pred chhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 000576 597 PSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFAL 676 (1412)
Q Consensus 597 ~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~ 676 (1412)
++|+++++.+++++|.+++++++|.+++||++|+.+++++||.+++++++.+++++++||+++++++++..|+++|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCcccccCCC---------------CCCchhHHHhhcc
Q 000576 677 LLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPN---------------TTEPLGVEVLQSR 741 (1412)
Q Consensus 677 ~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~~---------------~~~~~G~~~l~~~ 741 (1412)
+++.+++||+|++.+||+||+|++|++|++|+++++++|||++++|.|.+.+ ...++|.+++..+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 9999999999999999999999999999999999999999999999998321 1356789999999
Q ss_pred Ccc-----ccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccc---------cc---ccc-ccccccccCCccC
Q 000576 742 GFF-----TDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRR---------DS---SSQ-SLETITEANQPKR 803 (1412)
Q Consensus 742 ~~~-----~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~---------~~---~~~-~~~~~~~~~~~~~ 803 (1412)
++. ...+|+|+++|+++||.++|++.+++++.|+++........ .. ... ..+...+....++
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 770 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEKLDDSSHQEK 770 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcccccccccccccccccc
Confidence 988 77889999999999999999999999999999743322110 00 000 0010111111135
Q ss_pred CCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEE
Q 000576 804 RGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT 883 (1412)
Q Consensus 804 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~ 883 (1412)
+++..|+.|..++++||.|.+++|.+++.+| +++++|+||||.++||.++||||+||||||||||+|+||++.|.++
T Consensus 771 ~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~ 847 (1391)
T KOG0065|consen 771 NKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIE 847 (1391)
T ss_pred ccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEE
Confidence 6788888899999999999999988877766 6788999999999999999999999999999999999999999999
Q ss_pred EEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 884 GNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 884 G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
|+|+|||.|++++.|+|.+|||+|+|+|.|.+||||+|.|+|+||++.+++.+++.++||+|++.|||.+++|.+||.||
T Consensus 848 Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G 927 (1391)
T KOG0065|consen 848 GDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG 927 (1391)
T ss_pred eEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p-~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+|||++|||||+||+||++|| .||||||||||||++++..|++++|+++++|+||+||+||||.++|+.||++++|++
T Consensus 928 -~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 928 -SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred -CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhc
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCchHHHHhhhcCCCccCCCCCCCCCcceeEecCccchhhhhccHHHHHhccHHHHHHHHHHHhhcCCC
Q 000576 1043 GGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPA 1122 (1412)
Q Consensus 1043 gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1122 (1412)
||++||+||+|++++++++|||+++|++ ||+..|||||||||++.+.+...+.||++.|++|+++++++++++++++++
T Consensus 1007 GGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~ 1085 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPP 1085 (1391)
T ss_pred CCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999885 666669999999999999888889999999999999999999999999999
Q ss_pred CC-CCCCCCCCcccCcHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHH
Q 000576 1123 PG-SKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTA 1201 (1412)
Q Consensus 1123 ~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~ 1201 (1412)
++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||+.|+ ++||++|.+|++|++
T Consensus 1086 ~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma 1162 (1391)
T KOG0065|consen 1086 PGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMA 1162 (1391)
T ss_pred ccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHH
Confidence 88 77888899999999999999999999999999999999999999999999999999995 699999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 000576 1202 VLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFM 1281 (1412)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~ 1281 (1412)
+++.+..++..++|.+..||.+++||+++||||+.||++||+++|+||.++++.+|.+|+|+|+||++++.+|+||++++
T Consensus 1163 ~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~ 1242 (1391)
T KOG0065|consen 1163 TVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFM 1242 (1391)
T ss_pred HHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCcccc
Q 000576 1282 FFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRL 1361 (1412)
Q Consensus 1282 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~ 1361 (1412)
++..+|+++||||+.+++||.++|+++.+++++++++||||++|++.||.||+||||+||++|+++|++..+++|.+..|
T Consensus 1243 ~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c 1322 (1391)
T KOG0065|consen 1243 FIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTC 1322 (1391)
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C----------CCCcHHHHHHhhhC----CccCchhhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000576 1362 E----------SGETVKHFLRSYFG----FKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412 (1412)
Q Consensus 1362 ~----------~~~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1412 (1412)
. +|.||++|++++|| |.++.......+.++|.+++.+++.+++|+.|||||
T Consensus 1323 ~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1323 EDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred ecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 3 35699999999999 999999999999999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-233 Score=2313.66 Aligned_cols=1394 Identities=63% Similarity=1.080 Sum_probs=1262.2
Q ss_pred ccccCCCCCCccccC--CCC---CCCCchHHhHHHHHhhCCChhhhhhccccCC-----CCC---CcccccCCCChHhhH
Q 000576 17 ASRWGSASEGAFSRS--SRR---DEVDDEEALKWAALEKLPTYNRLRKGLLSTP-----SGH---GNEIDVDNLGLQERQ 83 (1412)
Q Consensus 17 ~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~l~~~~~~ 83 (1412)
.++|.. +++|++. +++ +.|||||+|+|||+||||||+|+|++++.+. .|+ ..|+|+++++.++++
T Consensus 18 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1470)
T PLN03140 18 RSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQ 95 (1470)
T ss_pred hhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHH
Confidence 345633 6888653 211 4678999999999999999999999999653 122 236999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhhcCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhccccc
Q 000576 84 LLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRK 163 (1412)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 163 (1412)
.++++++++.++|+++|+.++++|.+++|+++|++||+|+||++++++.++++.+||++|...+.++.+...++....++
T Consensus 96 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~ 175 (1470)
T PLN03140 96 KFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK 175 (1470)
T ss_pred HHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998886665443222334
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 243 (1412)
.+++||+|||+.++|||+++|+||||||||||||+|+|+++++.+++|+|++||+++++..+++.++||+|+|.|++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 56789999999999999999999999999999999999998876789999999999877766788999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+|||.|+++|++.+.++++..+..+++++.++.|+.+.+.++++.+.++.+.+..++++|+.+||++|+||.||+++++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 99999999999887777776667777888878888888888999988888888888999999999999999999999999
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
+|||||||||+||++|+++|+++||||||+|||+.++.+|++.|+++++..+.|+|+++|||.++++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999999999999876667888888899999999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCCCC
Q 000576 404 IVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPF 483 (1412)
Q Consensus 404 iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1412)
++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|+.++.++.+.+++..+.
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 495 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPF 495 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999888899777778777899999999999999888888777766
Q ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhhHHHH
Q 000576 484 DKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATF 563 (1412)
Q Consensus 484 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~g~lf 563 (1412)
++.+.++.....++|..++++|+++|..|++++++||+..+++++++.+++|+++|++|++++++.....++..+.|++|
T Consensus 496 ~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lf 575 (1470)
T PLN03140 496 DKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALL 575 (1470)
T ss_pred hhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Confidence 66555666666677999999999999999999999999999999999999999999999999877666667788899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHHHHHH
Q 000576 564 FIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLL 643 (1412)
Q Consensus 564 f~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~ 643 (1412)
|++++.++++++++..++.++|+|+|||+.+||++|+|++++++.++|+.++++++|++++|||+|+.+++++||.++++
T Consensus 576 f~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~ 655 (1470)
T PLN03140 576 FSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCccc
Q 000576 644 LLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWR 723 (1412)
Q Consensus 644 ~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~~ 723 (1412)
+++.++++.+++++++++++++.+|++++++.++++++++||++++++||+||+|++|+||+.|+++++++|||.+.+|.
T Consensus 656 ~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~ 735 (1470)
T PLN03140 656 VFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWM 735 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cc-CCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccc---ccc-----ccccc----
Q 000576 724 KI-LPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDI---RRR-----DSSSQ---- 790 (1412)
Q Consensus 724 ~~-~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~---~~~-----~~~~~---- 790 (1412)
+. +.+...+.|..+|+.+++...+.|+|+++++|++++++|+++++++++++++..... .+. .....
T Consensus 736 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1470)
T PLN03140 736 NKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPR 815 (1470)
T ss_pred CcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccc
Confidence 43 223346789999999999998899999999999999999999999999987522110 000 00000
Q ss_pred --------c---cc----c---c-----ccc-----CCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceee
Q 000576 791 --------S---LE----T---I-----TEA-----NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVL 842 (1412)
Q Consensus 791 --------~---~~----~---~-----~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i 842 (1412)
. .+ . . ... ......++.+|..|..++|+||+|.++.+.+++..+...+++.+
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~i 895 (1470)
T PLN03140 816 SLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQL 895 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceE
Confidence 0 00 0 0 000 01112345567788899999999999887655444444456689
Q ss_pred ecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000576 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLL 922 (1412)
Q Consensus 843 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~ 922 (1412)
|+|||+.++|||++||||||||||||||++|+|+.++|..+|+|.+||.+.++..+++.+|||+|+|.+++.+||+|+|.
T Consensus 896 L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 99999999999999999999999999999999998777789999999998765556778999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000576 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002 (1412)
Q Consensus 923 f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~ 1002 (1412)
|++.+|.+.+.+.+++++.++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++
T Consensus 976 ~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a 1055 (1470)
T PLN03140 976 YSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 (1470)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 99988877666666777889999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCCCchHHHHhhhcCCCccCCCCCCCCCcce
Q 000576 1003 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWM 1082 (1412)
Q Consensus 1003 ~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~ 1082 (1412)
..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||
T Consensus 1056 ~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~ 1135 (1470)
T PLN03140 1056 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWM 1135 (1470)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhh
Confidence 99999999999889999999999998889999999999988999999999999999999999998888899999999999
Q ss_pred eEecCccchhhhhccHHHHHhccHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCcHHHHHHHHHHHhhhhhccChHHHHH
Q 000576 1083 LEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAV 1162 (1412)
Q Consensus 1083 l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~ 1162 (1412)
+|+++.+.+...+.||++.|++|++++++++.+++++.+.++.++..++++|++|+++|++.|+||+++++||||.|+.+
T Consensus 1136 l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~ 1215 (1470)
T PLN03140 1136 LEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLV 1215 (1470)
T ss_pred hhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 99998776666667999999999999999888888877766666666677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHH
Q 000576 1163 RFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQ 1242 (1412)
Q Consensus 1163 r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~ 1242 (1412)
|+++++++|+++|++||+++++..+++|+++++|++|++++|+++.++++++|.+..||+||+|||++|+|++.+|++|+
T Consensus 1216 r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~ 1295 (1470)
T PLN03140 1216 RFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ 1295 (1470)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Q 000576 1243 VLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGF 1322 (1412)
Q Consensus 1243 ~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf 1322 (1412)
+++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|++++++++++|++||||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCccccCC-----CCcHHHHHHhhhCCccCchhhhHHHHHHHHHHHH
Q 000576 1323 IIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLES-----GETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFA 1397 (1412)
Q Consensus 1323 ~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1397 (1412)
++|+++||+||+|+||+||++|+++|+++|||+|.+..|++ ++++++|+.++|||+++++|++++++++|+++|+
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1455 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFA 1455 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999998875532 3578999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCC
Q 000576 1398 FVFGLGIKFLNFQRR 1412 (1412)
Q Consensus 1398 ~~~~~~l~~~~~~~r 1412 (1412)
+++++++|++|||||
T Consensus 1456 ~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1456 FIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-183 Score=1844.13 Aligned_cols=1261 Identities=32% Similarity=0.540 Sum_probs=1053.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCC--ceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeece
Q 000576 95 VDNEKFLLKLKNRFDRVGISMP--EIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGV 172 (1412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 172 (1412)
.|.+++++.++++.++.+...| +++|+|+||++++ ...+...+||+.|...+........+. ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566777665555555555555 8999999999999 444666789999988776653333221 12334567899999
Q ss_pred eeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CceeEEEECCccCCCcC--ccceEEEEcCCCCcCCCCCHHHHHH
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTVRETLA 249 (1412)
Q Consensus 173 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~e~l~ 249 (1412)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++++||+||+.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974321 25899999999875432 2356999999999999999999999
Q ss_pred HhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhh
Q 000576 250 FSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329 (1412)
Q Consensus 250 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGq 329 (1412)
|+++++....+.+. ..+. +..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDG---VSRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCC---CCHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 99877542111000 0000 011223567899999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecC
Q 000576 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409 (1412)
Q Consensus 330 kqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~ 409 (1412)
||||+||++|+.+|++++|||||+|||+.++.++++.|+++++..+.++|+++||+.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875567888888888899999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCCCCCCC---
Q 000576 410 REHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKT--- 486 (1412)
Q Consensus 410 ~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 486 (1412)
++++.+||+++||+||++.+++||+.++++++++ +++...+. ....+.++++++|+.++.++++.+++..+..+.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987542 33222111 123567899999998887766655443221110
Q ss_pred ------------CCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCcccc
Q 000576 487 ------------KSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTD 554 (1412)
Q Consensus 487 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~ 554 (1412)
...+.....+.+..++++|++.|.+|+++.++||+..++.++++.+++|+++|++|++.+.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0001122334688899999999999999999999999999999999999999999999876443 3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCH
Q 000576 555 GVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNA 634 (1412)
Q Consensus 555 ~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~ 634 (1412)
...+.|++||++++.++.++.++...+.++|+|+|||..++|++++|+++++++++|+.++.+++|.+++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHH
Q 000576 635 GRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMV 714 (1412)
Q Consensus 635 ~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~ 714 (1412)
++||.+++++++...++.++++++++++++..+|+.++++.++++++++||++++++||+||+|++|+||+.|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccc---CCC---------------------CCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHH
Q 000576 715 NEFLGHSWRKI---LPN---------------------TTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFAL 770 (1412)
Q Consensus 715 nef~~~~~~~~---~~~---------------------~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l 770 (1412)
|||.+..+.|. +.+ .....|.++|.. .+.....|.|.+++++++++++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999888774 110 113468888884 33334568999999999999999999999
Q ss_pred HHHhcccccccc-----cc----c--------cccccccccccccC---CccCCCc-c----cCC--CCceEEEeceeee
Q 000576 771 ALSFLNWSADDI-----RR----R--------DSSSQSLETITEAN---QPKRRGM-V----LPF--EPHSLTFDDVTYS 823 (1412)
Q Consensus 771 ~l~~l~~~~~~~-----~~----~--------~~~~~~~~~~~~~~---~~~~~~~-~----~~~--~~~~l~~~~l~~~ 823 (1412)
++++..+..... .+ . +.++..+++..+.. .+.+... . .|. ....++|+||+|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 999987532210 00 0 00011111111100 0000000 0 111 1224789999998
Q ss_pred eecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCccCCcccccceE
Q 000576 824 VDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYPKKQETFARIS 902 (1412)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~ 902 (1412)
++.+ ++++.+|+|||+.++|||++||||||||||||||++|+|+.++| ..+|+|.+||.+... .+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcce
Confidence 7522 13467999999999999999999999999999999999987654 346999999998753 467789
Q ss_pred EEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHh
Q 000576 903 GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELV 982 (1412)
Q Consensus 903 ~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~ 982 (1412)
|||+|+|.+++.+||+|+|.|++.+|.+.+.+++++++.++++++.++|.++.|+.+|.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999998776666677778899999999999999999987654 89999999999999999
Q ss_pred hCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCCCchHHHH
Q 000576 983 ANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIK 1061 (1412)
Q Consensus 983 ~~p~-illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~~~~~~~~ 1061 (1412)
.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.+++++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999998889999999999997788999999999988899999999998899999
Q ss_pred hhhcCCCccCCCCCCCCCcceeEecCccchhhhhccHHHHHhccHHHHHHHHHHHhhcCCCCCCC---CCCCCCcccCcH
Q 000576 1062 YFEGNPGVSKIKNGYNPATWMLEVTSPSQETALGIDFADIYKSSELYRRNKALIKDLSKPAPGSK---DLHFDTQYAQSF 1138 (1412)
Q Consensus 1062 yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1138 (1412)
||+++ |.++||+++|||||+||+++...+.....||.+.|++|++++...+.+++...+..... +.....+|+.|+
T Consensus 998 yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1076 (1394)
T TIGR00956 998 YFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076 (1394)
T ss_pred HHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCH
Confidence 99987 55679999999999999998755444456899999999998877666655433221111 111224689999
Q ss_pred HHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHHHHHHHHHHHHhHHHHHH
Q 000576 1139 FTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVA 1218 (1412)
Q Consensus 1139 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1218 (1412)
++|++.|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++. +.+++|.|+
T Consensus 1077 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~ 1152 (1394)
T TIGR00956 1077 WYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFV 1152 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH
Confidence 999999999999999999999999999999999999999999997 4789999999999998887776 346668888
Q ss_pred HhhhHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHH
Q 000576 1219 IERTVF-YRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAK-------FFWYLFFMFFTFLYFTF 1290 (1412)
Q Consensus 1219 ~er~v~-~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~-------f~~~~~~~~~~~~~~~~ 1290 (1412)
.||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+ |++|++++++..+++++
T Consensus 1153 ~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s 1232 (1394)
T TIGR00956 1153 AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232 (1394)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 888875 9999999999999999999999999999999999999999999988866 99999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCccccCC-------
Q 000576 1291 YGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLES------- 1363 (1412)
Q Consensus 1291 ~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~~------- 1363 (1412)
+|+++++++|+.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|..
T Consensus 1233 ~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~ 1312 (1394)
T TIGR00956 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFN 1312 (1394)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876632
Q ss_pred ---CCcHH--------------------------------HHHHhhhCCccCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000576 1364 ---GETVK--------------------------------HFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFL 1407 (1412)
Q Consensus 1364 ---~~~~~--------------------------------~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1407 (1412)
|.||+ +|+. .+|++.++.|+|++++++|++++ +++++++.++
T Consensus 1313 pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1313 PPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 33444 3443 56888899999999999999988 7777877765
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-95 Score=910.87 Aligned_cols=575 Identities=31% Similarity=0.566 Sum_probs=504.4
Q ss_pred CCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEc
Q 000576 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITIS 889 (1412)
Q Consensus 811 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 889 (1412)
.+..+.|+|+++..+.+.. ..+++|+||||.++|||++|||||||||||||||+|+|+...+ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999988764321 3478999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 890 GYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 890 g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
|++.....+++.+|||.|||.+.|++||+|+|.|+|.+|++.+.+.++++++|+++++.+||.+|+|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999998999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|++ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred cCCCCCchHHHHhhhcCCCccCCCCCCCCCcceeEecCcc-chhhhhccHHHH------HhccHHHHHHHH-HHHhhcCC
Q 000576 1050 GPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPS-QETALGIDFADI------YKSSELYRRNKA-LIKDLSKP 1121 (1412)
Q Consensus 1050 G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~-~~~~~~~~~~~~------~~~s~~~~~~~~-~~~~~~~~ 1121 (1412)
|++ +++.+||+++| . +||+++|||||++|+++.. .... -.+..+. ++..+...+... ..+.+..
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLST- 324 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhccc-
Confidence 997 78999999985 4 5999999999999998842 1110 0111111 110111111100 0111111
Q ss_pred CCCCCCCCCCCcccCcHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHH
Q 000576 1122 APGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTA 1201 (1412)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~ 1201 (1412)
.+.. +.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.
T Consensus 325 ---~~~~--~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 325 ---SKKV--EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFI 396 (613)
T ss_pred ---cccc--ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHH
Confidence 1111 111268999999999999999999999999999999999999999999999864 56677999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 000576 1202 VLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFM 1281 (1412)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~ 1281 (1412)
+.++.+..+...++.|+.||.+|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCcccc
Q 000576 1282 FFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRL 1361 (1412)
Q Consensus 1282 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~ 1361 (1412)
++..+.++++|++++++.||...|..+++++...+++|+||+++.++||.||+|++|+|+++|+++|++.|||++....|
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999733333
Q ss_pred C------CCCcHHHHHHhhhCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000576 1362 E------SGETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQR 1411 (1412)
Q Consensus 1362 ~------~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1411 (1412)
. +..+..+++. .++++.++.|.++.++++|.++|++++++++++....+
T Consensus 557 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2 2234555554 78999999999999999999999999999999865544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=914.94 Aligned_cols=565 Identities=28% Similarity=0.480 Sum_probs=500.9
Q ss_pred CceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000576 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYPKKQETFARISGYCEQNDIHSPQVT 916 (1412)
Q Consensus 838 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lT 916 (1412)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986553 358999999998776667788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000576 917 VYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 995 (1412)
Q Consensus 917 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~-~~~lSgGqrqRl~ia~~L~~~p~illlDEPTs 995 (1412)
|+||+.|++.++.+.+...+++++.++++++.++|.+++|+.+|.++ .++||||||||++||+||+++|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999987777777788889999999999999999999764 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCCCchHHHHhhhcCCCccCCCCC
Q 000576 996 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNG 1075 (1412)
Q Consensus 996 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~ 1075 (1412)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+||. +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999988899999999999988999999999998 5899999997 68999999985 4 69999
Q ss_pred CCCCcceeEecCccchhh-----hhccHHHHHhccHHHHHHHHHHHhhcCCCC---CCCCCCCCCcccCcHHHHHHHHHH
Q 000576 1076 YNPATWMLEVTSPSQETA-----LGIDFADIYKSSELYRRNKALIKDLSKPAP---GSKDLHFDTQYAQSFFTQCMACLW 1147 (1412)
Q Consensus 1076 ~npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 1147 (1412)
.|||||++|+++...+.+ ...++.+.|++|+.+++..+.......+.+ ........+.+..+++.|++.|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543221 113566778777776654443332111111 111111234578899999999999
Q ss_pred HhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH
Q 000576 1148 KQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRE 1227 (1412)
Q Consensus 1148 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE 1227 (1412)
|+++.+||||.++.+|+++.+++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||.+|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 46789999999999999998888778889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000576 1228 RAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAI 1307 (1412)
Q Consensus 1228 ~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1307 (1412)
+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCcc-ccCCC------CcHHHHHHhhhCCccC
Q 000576 1308 VSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKED-RLESG------ETVKHFLRSYFGFKHD 1380 (1412)
Q Consensus 1308 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~-~~~~~------~~~~~~~~~~~g~~~~ 1380 (1412)
++++++.++++|+||+++.++||+||+|++|+||++|+++|++.|||++.+. +|..+ +..++++.+.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998764 45421 1114666679999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000576 1381 FLGVVALVVVAFPMLFAFVFGLGIKFLNFQRR 1412 (1412)
Q Consensus 1381 ~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1412 (1412)
+.|.++++|++|.++|+++++++||+....+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998776665
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-94 Score=907.80 Aligned_cols=579 Identities=24% Similarity=0.398 Sum_probs=484.4
Q ss_pred CceEEEeceeeeeecchhh--------------hhcc--ccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 000576 812 PHSLTFDDVTYSVDMPQEM--------------KLRG--VLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~--------------~~~~--~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 875 (1412)
+..++|.|++|.+...... +..+ ...+++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999998644200 0000 01134679999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh
Q 000576 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR 955 (1412)
Q Consensus 876 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~ 955 (1412)
+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+.+.+.+++++.++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 866544689999999986533 3456899999999999999999999998887665555666677899999999999999
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhc
Q 000576 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1035 (1412)
Q Consensus 956 ~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD 1035 (1412)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999877889999999999999999999999999999999999999999999999988899999999999977999999
Q ss_pred cEeEEecCcEEEEEcCCCCCchHHHHhhhcCCCccCCCCCCCCCcceeEecCccchhh---------hhccHHHHHhccH
Q 000576 1036 ELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQETA---------LGIDFADIYKSSE 1106 (1412)
Q Consensus 1036 ~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~---------~~~~~~~~~~~s~ 1106 (1412)
++++|++ |+++|.|+. +++++||+++| . +||+++|||||++|+++...+.. ......+.|+++.
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 9999985 899999997 78999999985 4 69999999999999987532100 0012234453211
Q ss_pred HHHHHHHHHHhh--cC-CCC-----CCCCCC-CCCcccCcHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHh
Q 000576 1107 LYRRNKALIKDL--SK-PAP-----GSKDLH-FDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAM 1177 (1412)
Q Consensus 1107 ~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~ 1177 (1412)
.++.++.++.. .. +.. ..+... ....+..+||+|+.+|++|++++ |||+.++.+|+++++++|+++|++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~l 426 (659)
T PLN03211 349 -APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLM 426 (659)
T ss_pred -cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHH
Confidence 11111111110 00 000 000000 11235578999999999999988 999999999999999999999999
Q ss_pred ccCCCCCCCCHHhHHHHHhHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000576 1178 FWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTY 1257 (1412)
Q Consensus 1178 f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~ 1257 (1412)
||+++ ..+++++.|++|++++++++.+++.+++.|+.||+||+|||++|+|++++|++|++++|+|+.++.+++|
T Consensus 427 f~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if 501 (659)
T PLN03211 427 WWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIF 501 (659)
T ss_pred HhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 4678999999999999988888888889999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhh
Q 000576 1258 GLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYY 1337 (1412)
Q Consensus 1258 ~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~ 1337 (1412)
++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.++++++.++++||||+++ +||+||+|++
T Consensus 502 ~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ 579 (659)
T PLN03211 502 LTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIK 579 (659)
T ss_pred HhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCcc-----ccCCC-----CcHHHHHHhhhCCccCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000576 1338 WACPLAWTLYGLIASQYGDKED-----RLESG-----ETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFL 1407 (1412)
Q Consensus 1338 ~isp~~y~~~~l~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1407 (1412)
|+||++|+++|++.|||++... .|+.. ..| .++. ..++++...|.++++|++|+++|+++++++|+++
T Consensus 580 ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 580 YISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987542 35321 112 2222 2344455689999999999999999999999998
Q ss_pred cc
Q 000576 1408 NF 1409 (1412)
Q Consensus 1408 ~~ 1409 (1412)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-91 Score=945.01 Aligned_cols=561 Identities=25% Similarity=0.423 Sum_probs=494.2
Q ss_pred CceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--CeEEEEEEEcCccCCc--ccccceEEEeccCCCCCC
Q 000576 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--GYVTGNITISGYPKKQ--ETFARISGYCEQNDIHSP 913 (1412)
Q Consensus 838 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~~yv~Q~~~~~~ 913 (1412)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+... .+.+|+|.+||.+..+ ..+++.++|++|+|.|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999997532 2368999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHH-HHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000576 914 QVTVYESLLYSAWLRLSP----EVDSKTRK-MFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 988 (1412)
Q Consensus 914 ~lTv~E~l~f~a~lr~~~----~~~~~~~~-~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~il 988 (1412)
.+||+|++.|++.+|.+. ....+++. +.++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999887643 23334433 3357789999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCCCchHHHHhhhcCC
Q 000576 989 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNP 1067 (1412)
Q Consensus 989 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~ 1067 (1412)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.+++++||++++|++ |+++|+||. +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999864 999999999998889999999999995 899999997 78999999985
Q ss_pred CccCCCCCCCCCcceeEecCccchh----------hhhccHHHHHhccHHHHHHHHHHHhhcCCC---------------
Q 000576 1068 GVSKIKNGYNPATWMLEVTSPSQET----------ALGIDFADIYKSSELYRRNKALIKDLSKPA--------------- 1122 (1412)
Q Consensus 1068 g~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1122 (1412)
. +||+++|||||++|+++++.+. ....+|++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4 6999999999999998864311 123479999999998887665554321110
Q ss_pred CCCCCCCCCCcccCcHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHHH
Q 000576 1123 PGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAV 1202 (1412)
Q Consensus 1123 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1202 (1412)
..++.....+.|..|+++|+++|++|+++.+||||.++.+|+++.+++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234588899999999999999999999999999999999999999999999986 4578999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 000576 1203 LFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMF 1282 (1412)
Q Consensus 1203 ~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~ 1282 (1412)
+++++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||.|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99998886665 55668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCccccC
Q 000576 1283 FTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLE 1362 (1412)
Q Consensus 1283 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~ 1362 (1412)
++.++++++|+++++++|+..+|+.++++++.++++|+||++|.++||+||+|++|+||++|+++|+++|||++...+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777663
Q ss_pred ----C---------------------C---CcHHHHHHhhhCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 000576 1363 ----S---------------------G---ETVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNF 1409 (1412)
Q Consensus 1363 ----~---------------------~---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1409 (1412)
. | .++.+|+...||++++++|++++++++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 146789988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-90 Score=929.74 Aligned_cols=562 Identities=24% Similarity=0.390 Sum_probs=484.6
Q ss_pred CceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000576 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYPKKQETFARISGYCEQNDIHSPQVT 916 (1412)
Q Consensus 838 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lT 916 (1412)
.++.+|+||||.++|||+++|+|||||||||||++|+|+..+. ..+|+|.+||.+..+...++.++||+|+|.|++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3577999999999999999999999999999999999976542 468999999998755444678999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-------CCHHHH------------------------HHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 917 VYESLLYSAWLRLSPE-------VDSKTR------------------------KMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 917 v~E~l~f~a~lr~~~~-------~~~~~~------------------------~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
|+|+|.|++.++.+.. ...+++ +..++++++.+||.+++|+.+|+...+
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999999988764321 111111 123678999999999999999998889
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
+|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|||+++|||+.+++++||++++|++ |
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-G 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-c
Confidence 9999999999999999999999999999999999999999999999986 4899999999998899999999999985 8
Q ss_pred EEEEEcCCCCCchHHHHhhhcCCCccCCCCCCCCCcceeEecCccch-h-----------hhhccHHHHHhccHHHHHHH
Q 000576 1045 QEIYVGPLGRHSSHLIKYFEGNPGVSKIKNGYNPATWMLEVTSPSQE-T-----------ALGIDFADIYKSSELYRRNK 1112 (1412)
Q Consensus 1045 ~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~ 1112 (1412)
+++|+||. +++.+||+++| . +||+++|||||++|+++..+. . ....+|++.|++|+.+++..
T Consensus 415 ~ivy~G~~----~~~~~yF~~lG-f-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESCG-F-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHcC-C-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999997 78999999995 4 699999999999999986432 1 11246899999998887655
Q ss_pred HHHHhhcCCCCCCCCCCCCCcccCcHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHH
Q 000576 1113 ALIKDLSKPAPGSKDLHFDTQYAQSFFTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLF 1192 (1412)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1192 (1412)
+.++.........+.....+.|..|++.|++.|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 44332110001111111234588999999999999999999999999999999999999999999999986644455667
Q ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHH
Q 000576 1193 NAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAA 1272 (1412)
Q Consensus 1193 ~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~ 1272 (1412)
...|++|++++++.+.++.. ++.+..||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||+++++
T Consensus 569 ~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 78899999988887766544 57888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHH
Q 000576 1273 KFFWYLFFMFFTFLYFTFYGMMAVSLTPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIAS 1352 (1412)
Q Consensus 1273 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ 1352 (1412)
+||.|+++++++.++++++++++++++|+..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|+++|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc---cC-CCC-cHHHHHHhhhCCccC--chhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 000576 1353 QYGDKEDR---LE-SGE-TVKHFLRSYFGFKHD--FLGVVALVVVAFPMLFAFVFGLGIKFLN 1408 (1412)
Q Consensus 1353 ~~~~~~~~---~~-~~~-~~~~~~~~~~g~~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1408 (1412)
||.+.... |. ... ++.+|+ +.+|+..+ +.|+++++|+||+++|.+++++++++++
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99765432 11 112 345555 78999754 5689999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-84 Score=808.08 Aligned_cols=563 Identities=26% Similarity=0.466 Sum_probs=500.4
Q ss_pred CceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000576 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYPKKQETFARISGYCEQNDIHSPQVT 916 (1412)
Q Consensus 838 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lT 916 (1412)
.+..+|+|+||.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999965432 235799999999776544788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000576 917 VYESLLYSAWLRLSPE----VDSKTRK-MFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991 (1412)
Q Consensus 917 v~E~l~f~a~lr~~~~----~~~~~~~-~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlD 991 (1412)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+|++||+...||+||||||||++|.+++.+++++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCCCchHHHHhhhcCCCcc
Q 000576 992 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVS 1070 (1412)
Q Consensus 992 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~ 1070 (1412)
|+|+|||+.|+.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |++||+||. .++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999864 899999999999999999999999997 899999998 78999999985 4
Q ss_pred CCCCCCCCCcceeEecCccchhh------------hhccHHHHHhccHHHHHHHHHHHhhcCCCCCCCCCCCCCcccCcH
Q 000576 1071 KIKNGYNPATWMLEVTSPSQETA------------LGIDFADIYKSSELYRRNKALIKDLSKPAPGSKDLHFDTQYAQSF 1138 (1412)
Q Consensus 1071 ~~~~~~npad~~l~v~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1138 (1412)
+||+..++|||+.+|++..++.+ ...+|++.|.+|+.+++.+..++........++.....+.|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999998322111 114799999999999876544332211122223333456799999
Q ss_pred HHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHhHHHHHhHHHHHHHHHHHHHHHhHHHHHH
Q 000576 1139 FTQCMACLWKQRWSYWRNPPYTAVRFLSTTITSLTFGAMFWDMGTKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVA 1218 (1412)
Q Consensus 1139 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1218 (1412)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..++....+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 4677889999999999999888777665 5666
Q ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000576 1219 IERTVFYRERAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQFEWTAAKFFWYLFFMFFTFLYFTFYGMMAVSL 1298 (1412)
Q Consensus 1219 ~er~v~~rE~~~g~Y~~~~y~~a~~l~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1298 (1412)
+.|+||+|||...+|+|++|.++..+.++|..++.+++|.+|+||++||.+++++||.++++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHhhCCCccccC-CCC------------
Q 000576 1299 TPNHHISAIVSFGFYALWNVFSGFIIPRPRIPIWWKWYYWACPLAWTLYGLIASQYGDKEDRLE-SGE------------ 1365 (1412)
Q Consensus 1299 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~~~------------ 1365 (1412)
+|+...|+.++++.+....+++||+||.++||+||+|++|+||+.|+++++++|||.+.+.+|. .||
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999888885 111
Q ss_pred ------------cHHHHHHhhhCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000576 1366 ------------TVKHFLRSYFGFKHDFLGVVALVVVAFPMLFAFVFGLGIKFLNFQ 1410 (1412)
Q Consensus 1366 ------------~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1410 (1412)
.+.+|++..|.|++.|.|++++|++||.++|.+++.+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 246788888999999999999999999999999999999999853
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-76 Score=746.11 Aligned_cols=609 Identities=22% Similarity=0.355 Sum_probs=467.4
Q ss_pred CCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHH
Q 000576 115 MPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTT 194 (1412)
Q Consensus 115 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 194 (1412)
.+.++++|.|+++.+.......+... ....+.. -...+++.++++++++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGH-KPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----ccccccc-ccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35789999999998753210111110 0010000 001223445566788999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHc
Q 000576 195 LLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274 (1412)
Q Consensus 195 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 274 (1412)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LT------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CC------
Confidence 999999998874 3589999999987532 23569999999999999999999999875432100 00
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCC
Q 000576 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354 (1412)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsg 354 (1412)
.++....++++++.+||++++||.+|++..++|||||||||+||++|+.+|++|+|||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 01122346789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000576 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434 (1412)
Q Consensus 355 LD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 434 (1412)
||+.++.++++.|+++++ .+.|+|+++||+..+++++||++++|++|+++|+|+++++.+||+++|++||++.|+|||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 4567777666666689999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCC---CCCCCC-----CCCc-cccCCCCCCCHHHH
Q 000576 435 QEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGI---PFDKTK-----SHPA-ALTTKKYGVGKKES 505 (1412)
Q Consensus 435 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~ 505 (1412)
.++++...+.+.....+.+ ...+++.+.|++.. .+...+.... .....+ ..+. ......+..+++.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 01122333333211 1111000000 000000 0000 00112245678999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhhHHHHHHHHHHHH-HHHHHHHHHhhcc
Q 000576 506 LKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMF-NGMAEISMTIAKL 584 (1412)
Q Consensus 506 ~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~l~~~~~~~ 584 (1412)
+..+.+|.++. +|+......|+++.+++|+++|++|++.+ ..+.+...|++||.+++.++ ..+..+.....++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 78887778999999999999999999874 12345678999998777554 5566777778899
Q ss_pred hhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000576 585 PIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRN 664 (1412)
Q Consensus 585 pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~ 664 (1412)
++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++++|+.+++++++...++.+++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCcc-----cccCCCCCCchhHHHhh
Q 000576 665 LVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSW-----RKILPNTTEPLGVEVLQ 739 (1412)
Q Consensus 665 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~-----~~~~~~~~~~~G~~~l~ 739 (1412)
..+|+.++++..+++++++||+++ +||+||+|++|+||++|+++++++|||.+.+. .|.........+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976532 33221100001111222
Q ss_pred ccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 000576 740 SRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLN 776 (1412)
Q Consensus 740 ~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~ 776 (1412)
...+. ....|.++++|++++++|.++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234688999999999999999999997654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=751.01 Aligned_cols=569 Identities=25% Similarity=0.418 Sum_probs=476.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 242 (1412)
++++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44678999999999999999999999999999999999998875456899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc-
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM- 321 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~- 321 (1412)
||+|||.|+++++...... .++....++.+++.+||++++||.||+++
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998765321100 01123457889999999999999999864
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .+.|+|+++|||..+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 679999999999999999999999999999999999999999999999976 4677888888888899999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCC
Q 000576 402 GQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGI 481 (1412)
Q Consensus 402 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1412)
|+++|+|+++++.+||+++|++||++.+++||+.++++.....+ .+ .....+++.+.++.++..++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999876532211 00 011234455556555444433322211
Q ss_pred CCCCC---CCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhh
Q 000576 482 PFDKT---KSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIY 558 (1412)
Q Consensus 482 ~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~ 558 (1412)
..... ...........+..+++.|+..+..|.++..+||+..+..++++.+++++++|++|++.+.+.. .....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 11000 0000111223467889999999999999999999999999999999999999999999875432 33445
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHH
Q 000576 559 AGATFFIIIMIMFNGMAE-ISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRF 637 (1412)
Q Consensus 559 ~g~lff~~~~~~~~~~~~-l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~f 637 (1412)
.|++|+.++...+.++.. +.....++++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 788888888777776544 4555679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHh
Q 000576 638 FRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEF 717 (1412)
Q Consensus 638 f~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef 717 (1412)
|.+++++++...++.+++.++++++++..+|+.++++.++++++++||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCCC---CCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 000576 718 LGHSW-RKILPNT---TEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFL 775 (1412)
Q Consensus 718 ~~~~~-~~~~~~~---~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l 775 (1412)
.+..+ .|...+. +...|..+++.+++... +.|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 3432221 23458889999888654 458999999999999999999999764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-76 Score=738.11 Aligned_cols=581 Identities=31% Similarity=0.526 Sum_probs=489.5
Q ss_pred CceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHH
Q 000576 116 PEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTL 195 (1412)
Q Consensus 116 ~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 195 (1412)
..++++|+|++++.... ....+++|+||||+++|||++||+||+|||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 45789999999987431 1145779999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcC
Q 000576 196 LLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275 (1412)
Q Consensus 196 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 275 (1412)
|++|+|+..+..+++|+|++||++.+....++.+|||.|+|.+++++||+|++.|+++++-+.+ +
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~-------- 137 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L-------- 137 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C--------
Confidence 9999999987667899999999887776778899999999999999999999999998874321 1
Q ss_pred CCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCC
Q 000576 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGL 355 (1412)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgL 355 (1412)
..++.+.++|.+++.|||.+|+||+||+...||+||||||||+||..|+.+|+||+||||||||
T Consensus 138 ----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 138 ----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred ----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 1234456789999999999999999999989999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000576 356 DSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435 (1412)
Q Consensus 356 D~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 435 (1412)
|+.++.++++.|+++|+. ++|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.|++||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999987 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCch--hhhhhhhcCCCCCccCCHhHHHHHHHhcc-hhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000576 436 EVTSRK--DQEQYWANKEEPYRFVTVKEFADAFQSFS-VGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSR 512 (1412)
Q Consensus 436 ~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 512 (1412)
++.+.+ .++..... ......+.++..+ ..+... ....... + ..........++|.|+..+.+|
T Consensus 281 ~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~-~~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLE-ALEKSLS----T-SKKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHH-HHhhhcc----c-ccccccccCCcHHHHHHHHHHH
Confidence 987743 11100000 0000000000000 000000 0000000 0 0000011167899999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhhHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHhh
Q 000576 513 ELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMA-EISMTIAKLPIFYKQR 591 (1412)
Q Consensus 513 ~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~pvf~k~r 591 (1412)
.+..+.|++.....|.++.+.+++++|.+|++.+...... ....|++||.+.+..+..+. .+.....++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999986544332 25678888888777676666 5777889999999999
Q ss_pred hcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 000576 592 DLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTF 671 (1412)
Q Consensus 592 ~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~ 671 (1412)
..+.|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.++.++...++.++..+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCcccccCC--CCCCchhHHHhhccCccccccc
Q 000576 672 GAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILP--NTTEPLGVEVLQSRGFFTDSYW 749 (1412)
Q Consensus 672 ~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~--~~~~~~G~~~l~~~~~~~~~~~ 749 (1412)
+++..+.+++++||+++.+++|.||.|+.|+|+.+|++++++.|+|.+....|... ..+...|.+++...++... .
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--S 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--c
Confidence 99999999999999999999999999999999999999999999999744444333 3456778899999888665 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 000576 750 YWLGVGALLGFIILFNIGFALALSFLN 776 (1412)
Q Consensus 750 ~w~~~~~L~g~~~~f~i~~~l~l~~l~ 776 (1412)
.|.++.++++++++|.++.++++.+..
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999999999998753
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-76 Score=758.50 Aligned_cols=751 Identities=22% Similarity=0.286 Sum_probs=471.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHH
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 245 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 245 (1412)
.+.|+|||++|++|+++||+||.||||||||.+|+|+++.. +|+|.++| .+|||+|++ |+.+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-WI~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-WIQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-HhhCCcHH
Confidence 34899999999999999999999999999999999999864 89999999 599999975 56688999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccC
Q 000576 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325 (1412)
Q Consensus 246 e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~L 325 (1412)
|||.||..+. .+||+.+.++|.+++|.++.|++|. |.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~--------------------------------TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGDL--------------------------------TEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCc--------------------------------ceecCCcc-CC
Confidence 9999998775 4799999999999999988888874 99999999 69
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEE
Q 000576 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405 (1412)
Q Consensus 326 SGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv 405 (1412)
|||||||+++|||+++++||++||+|.|++|+++..+|++.+-. ..++++|+|.++| .-+..+.+|.|++|++|+|.
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~--~~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR--GLLRGKTVILVTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH--hhhcCCEEEEEeC-chhhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999877663 3456777887777 56788999999999999999
Q ss_pred EecChhhHHH---HHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCCC
Q 000576 406 YQGPREHVLE---FFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIP 482 (1412)
Q Consensus 406 ~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1412)
..|+++|+.+ .|+++ +.+....++.+ .....+.......+ .+. +.. .....
T Consensus 722 ~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~-~~~-------~~~~~- 775 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRE-SES-RSL-------ESLSS- 775 (1381)
T ss_pred cccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccc-hhh-hhh-------hhhcc-
Confidence 9999999973 22222 00000000000 00000000000000 000 000 00000
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH------H------HHHHHH-HH--cccCC
Q 000576 483 FDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTT------I------ALVTMT-LF--FRTKM 547 (1412)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~------~------ali~~t-lf--~~~~~ 547 (1412)
..+. .+.......+......|+...++.+.+..|++...... + .+.++. .| +.++.
T Consensus 776 ----~~~~-----~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~ 846 (1381)
T KOG0054|consen 776 ----EEEK-----SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDD 846 (1381)
T ss_pred ----cccc-----cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 00000001122222333444444445555555411110 0 111111 11 12221
Q ss_pred CC-------CccccchhhhHHHHHHHHHHHHHHHHH--------------HHHHhhcchhHH-----HhhhcCCcchhhH
Q 000576 548 HR-------DSVTDGVIYAGATFFIIIMIMFNGMAE--------------ISMTIAKLPIFY-----KQRDLQFYPSWAY 601 (1412)
Q Consensus 548 ~~-------~~~~~~~~~~g~lff~~~~~~~~~~~~--------------l~~~~~~~pvf~-----k~r~~~~y~~~ay 601 (1412)
.. +......+|..+.+..++..++.++.. +...+.+.|+-+ ..|.++.++.+.+
T Consensus 847 ~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~ 926 (1381)
T KOG0054|consen 847 GEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDID 926 (1381)
T ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchH
Confidence 11 111122234333333333333333322 222234445432 2488999999999
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhccccCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 000576 602 AFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNA------GRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFA 675 (1412)
Q Consensus 602 ~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~------~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~ 675 (1412)
.++..+......++..++..+.+..+++..... .-+..++.+..+....+..+.|+-+ +++++..++.-.+
T Consensus 927 ~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes-itRSPi~sh~~Et-- 1003 (1381)
T KOG0054|consen 927 TVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES-ITRSPIYSHFSET-- 1003 (1381)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-cccchHHHhHHHH--
Confidence 999888877777777776666665555543221 1112222233334445566666644 3455544443332
Q ss_pred HHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHhhcc-----Cccccccch
Q 000576 676 LLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGVEVLQSR-----GFFTDSYWY 750 (1412)
Q Consensus 676 ~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~~~~~~~G~~~l~~~-----~~~~~~~~~ 750 (1412)
+.|....| +|-..+.+-..+...++......+.....+.+.....+.+... .+......-
T Consensus 1004 ------l~GlsTIR---------Af~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~ 1068 (1381)
T KOG0054|consen 1004 ------LQGLSTIR---------AFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPS 1068 (1381)
T ss_pred ------hcCcceee---------eccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33332221 1211222111111111111110000000000101111111000 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccCC-ccC------CCcccCCCC--ceEEEecee
Q 000576 751 WLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEANQ-PKR------RGMVLPFEP--HSLTFDDVT 821 (1412)
Q Consensus 751 w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~--~~l~~~~l~ 821 (1412)
-..-..++|+.+.|.+..+-.+.+.. +...+.++++.++|++.++.. +++ .....+..| ..++|+|++
T Consensus 1069 ~~~~~g~vGLslsyal~lt~~l~~~v---R~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1069 GLISPGLVGLSLSYALQLTGLLQWLV---RQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHH---HHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 00013455566665555554444443 333444555566665443222 111 111112223 379999999
Q ss_pred eeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc---ccc
Q 000576 822 YSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETF 898 (1412)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~ 898 (1412)
.+|.. +-..+|||||++|+|||++||+|++|||||||+++|.+...+ .+|+|.|||.++.+ .++
T Consensus 1146 ~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1146 LRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred EEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHH
Confidence 88852 234699999999999999999999999999999999986553 57999999999876 457
Q ss_pred cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccC------CCCCCCCCHHHH
Q 000576 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG------LPGVNGLSTEQR 972 (1412)
Q Consensus 899 ~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg------~~~~~~lSgGqr 972 (1412)
|+.++.+||||.++.. |+|.|| |+.++..++.++++++..+|.+....+.+ .+++.++|.|||
T Consensus 1213 RsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 7889999999988754 766665 56666677788999999988776544332 135678999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|.+|+||||+++++||+|||+|+++|++|+..|+++||+-.+ +||||+++|+.+. +. -+|||+||++ |+++++|++
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vm-d~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VM-DSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hh-hcCeEEEeeC-CeEeecCCh
Confidence 999999999999999999999999999999999999999875 7999999999874 44 4799999996 899999998
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=726.71 Aligned_cols=806 Identities=21% Similarity=0.290 Sum_probs=437.0
Q ss_pred HhhHHHHHHhhcCCCCCHHHHHHHHHHH-HhhcCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhh
Q 000576 80 QERQLLIDKLVKVPDVDNEKFLLKLKNR-FDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNI 158 (1412)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 158 (1412)
+..+....++.++.+..+. +... ....-..-...+++|+|+.+++.
T Consensus 315 ~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP---------------------------- 361 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP---------------------------- 361 (1228)
T ss_pred hccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC----------------------------
Confidence 3455556666666555443 1100 00111222456899999999752
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCC
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQH 235 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 235 (1412)
.+++..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++.+++. +.++|.|+|+
T Consensus 362 ---sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 362 ---SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred ---CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 123567999999999999999999999999999999999999998 8999999999988765 4789999998
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
|. ++..||+|||.|+. ||...+...+++. .....+++.+ |++.+||
T Consensus 436 Pv-lF~~tI~eNI~~G~-------------------------~dat~~~i~~a~k-----~ana~~fi~~---lp~g~~T 481 (1228)
T KOG0055|consen 436 PV-LFATTIRENIRYGK-------------------------PDATREEIEEAAK-----AANAHDFILK---LPDGYDT 481 (1228)
T ss_pred hh-hhcccHHHHHhcCC-------------------------CcccHHHHHHHHH-----HccHHHHHHh---hHHhhcc
Confidence 85 55679999999973 2333334444432 2233455555 8999999
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.||++++. ||||||||++|||||+.+|+|||||||||+||+.+...+.+.|++... ++|||+ +.|....+-+ +|+
T Consensus 482 ~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 482 LVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTIRN-ADK 556 (1228)
T ss_pred cccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhhhc-cCE
Confidence 99999884 999999999999999999999999999999999999999999998753 456666 7788877776 999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH--HhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhh
Q 000576 396 IILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL--QEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQ 473 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1412)
|++|++|+|++.|+++|+++. .--.++.. |+....++. ..+.... .++.....+.+....
T Consensus 557 I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~~-------~~~~~~s~~~s~~~~ 618 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEESL-------KEERSRSLKSSSSSP 618 (1228)
T ss_pred EEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccch-------hhhhhhccccccccc
Confidence 999999999999999999862 00111221 222111110 0000000 000000000000000
Q ss_pred hhhhhhCCC-C--CCCCCC-Cc-cccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHH-------HHHHHHHHHHHHHH
Q 000576 474 ILGDELGIP-F--DKTKSH-PA-ALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFK-------LFQLTTIALVTMTL 541 (1412)
Q Consensus 474 ~~~~~~~~~-~--~~~~~~-~~-~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~-------~~~~~~~ali~~tl 541 (1412)
......... . .+.+.. +. .........++++.++ ..+.++...+.- -....+.+++++.+
T Consensus 619 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k--------~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~ 690 (1228)
T KOG0055|consen 619 SLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFK--------LNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQV 690 (1228)
T ss_pred cccCCccccccccccccccccccccccccccccHHHHHH--------hccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 000000000 0 000000 00 0001112333444333 223333222222 22233444444443
Q ss_pred H---cccCCCCCcccc-----chhhhHHHHHHHHHH-----HHHHHHHHHHHhhcchhHHH--hhhcCCcchhhHHHHhH
Q 000576 542 F---FRTKMHRDSVTD-----GVIYAGATFFIIIMI-----MFNGMAEISMTIAKLPIFYK--QRDLQFYPSWAYAFPTW 606 (1412)
Q Consensus 542 f---~~~~~~~~~~~~-----~~~~~g~lff~~~~~-----~~~~~~~l~~~~~~~pvf~k--~r~~~~y~~~ay~l~~~ 606 (1412)
+ +..+. +.+.. ...+.++.+...+.. +|.-+++....-.|..+|.+ ..+..||...-.. +..
T Consensus 691 ~~~f~~~~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l 767 (1228)
T KOG0055|consen 691 LEAFYPPDD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GAL 767 (1228)
T ss_pred HHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHH
Confidence 3 22221 11111 112222222222222 23333333333333333332 1233343222111 111
Q ss_pred hhhh----h-------------HHHHHHHHHHhhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH----
Q 000576 607 IPKI----P-------------ISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNL---- 665 (1412)
Q Consensus 607 l~~l----p-------------~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~---- 665 (1412)
..++ + +..+.+++..+++-|..|..-..--...+ -++........+++.......
T Consensus 768 ~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~----Pll~~~~~~~~~~~~~~~~~~~~~~ 843 (1228)
T KOG0055|consen 768 SSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATF----PLLILSGYLQKKFLKGFSKDDKKAY 843 (1228)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 1111 0 00111111111111111100000000000 000000000011111111000
Q ss_pred -----HHHHHHHHHHHHHHHHHhcccccc--cCh-hhH--HHHHHHHcHHHHHHHHHHHHHhcCCcccccCCCCCCchhH
Q 000576 666 -----VVANTFGAFALLLLYALGGFVLNR--EDI-KSW--WIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGV 735 (1412)
Q Consensus 666 -----~~a~~~~~~~~~~~~l~~Gf~i~~--~~i-~~~--~~w~~~isp~~ya~~al~~nef~~~~~~~~~~~~~~~~G~ 735 (1412)
....++..+-.+..+.....+... +.. +++ ..+--+++-+.|+..
T Consensus 844 ~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~s------------------------- 898 (1228)
T KOG0055|consen 844 EEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFS------------------------- 898 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 001111111111111111111100 000 000 000000111111110
Q ss_pred HHhhccCccccccchhhhHH-----------HH-HHHHHHHHH-HHHHHHHhccccccccccccccc-cccccccccCCc
Q 000576 736 EVLQSRGFFTDSYWYWLGVG-----------AL-LGFIILFNI-GFALALSFLNWSADDIRRRDSSS-QSLETITEANQP 801 (1412)
Q Consensus 736 ~~l~~~~~~~~~~~~w~~~~-----------~L-~g~~~~f~i-~~~l~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 801 (1412)
++.-|+.....+|.+.. .. +...+.|.. ...-+..+.....+.... ..+. .-.++....+..
T Consensus 899 ---qs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~A-a~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 899 ---QSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIA-AGSIFEILDRKPTIDPD 974 (1228)
T ss_pred ---HHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH-HHHHHHHhcCCCCCCCC
Confidence 00001111111111100 00 000001110 001111111110000000 0000 000000000011
Q ss_pred cCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCe
Q 000576 802 KRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY 881 (1412)
Q Consensus 802 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~ 881 (1412)
.+.+...|.-...++++||++.|+..+ ...+|+|+|++|++|+.+||+|||||||||.+.+|-+..++
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-- 1042 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-- 1042 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--
Confidence 111222233345799999999997542 45799999999999999999999999999999999876543
Q ss_pred EEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCC
Q 000576 882 VTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL-------VEL 951 (1412)
Q Consensus 882 ~~G~i~i~g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~-------l~l 951 (1412)
..|.|.|||.++++ ..+|+.+|.|.|+|.++. .|++||+.|+. .+.+.++ +.++.+. .+|
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIEAAKLANAHNFISSL 1112 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHHHHHHhhhHHHHhcC
Confidence 58999999998765 356788999999999885 59999999981 1133222 2333332 234
Q ss_pred chhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 000576 952 NLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031 (1412)
Q Consensus 952 ~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~ 1031 (1412)
.+-.||.+|..|. +||||||||++|||||++||+||+|||+||.||+++.+.|+++|.+.. .|||.|+++|++| ..
T Consensus 1113 P~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TI 1188 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TI 1188 (1228)
T ss_pred cCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hh
Confidence 4556788887665 699999999999999999999999999999999999999999999875 5899999999987 46
Q ss_pred HhhccEeEEecCcEEEEEcCC
Q 000576 1032 EAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1032 ~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
+.+|.|.++++ |++++.|.-
T Consensus 1189 qnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1189 QNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred hcCCEEEEEEC-CEEEecccH
Confidence 78999999985 899999973
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=726.81 Aligned_cols=225 Identities=27% Similarity=0.414 Sum_probs=193.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|+++.|+. .++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 1936 ~~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~ 2002 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKS 2002 (2272)
T ss_pred ceEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEE
Confidence 35899999998841 125699999999999999999999999999999999997654 47999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 893 KKQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 893 ~~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
+.. ...++.+|||+|++.+++.+||+|++.+.+.++.. ..++.++.++++++.++|.+.+|..++ .||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 642 22456799999999999999999999988776532 233445678899999999988887654 79999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|+|+++ ++..+|||+++|.+ |++++.|
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~G 2152 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999878999999999987 68889999999995 8999999
Q ss_pred CCCCCchHHHHhhh
Q 000576 1051 PLGRHSSHLIKYFE 1064 (1412)
Q Consensus 1051 ~~~~~~~~~~~yF~ 1064 (1412)
++ +++..-|.
T Consensus 2153 s~----q~Lk~~~g 2162 (2272)
T TIGR01257 2153 TI----QHLKSKFG 2162 (2272)
T ss_pred CH----HHHHHHhC
Confidence 87 55555553
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-69 Score=733.52 Aligned_cols=211 Identities=23% Similarity=0.302 Sum_probs=177.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 36999999999952 123599999999999999999999999999999999997654 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+.+ ..+++.+++|||++.++.. |+||||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 764 4567889999999998875 9999996431 122 33467788877775433 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||+||||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999986 4899999999987 3566999999995
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|++
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-68 Score=726.07 Aligned_cols=211 Identities=22% Similarity=0.280 Sum_probs=177.3
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++|+||+++|+. +.+.+|+|+|++|+|||++||+||||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 36999999999941 224599999999999999999999999999999999997654 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+.+ ..+++.++||||++.+++. |+||||.+. .+.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 4577889999999998875 999999642 1222 23467788887776543 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||+||||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999986 4566999999995
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|++
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 899999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-67 Score=716.59 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=177.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 469999999999521 13599999999999999999999999999999999997654 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+.+ ..+++.++||||++.+++. |+||||... .+.+ ++.++++++..++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 4567889999999999875 999999521 1222 23467788888876543 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4799999999986 4567999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|++
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-66 Score=610.74 Aligned_cols=474 Identities=26% Similarity=0.338 Sum_probs=367.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCceeEEEECCccCCCcCc-------cceEEEEcCCC-
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-LRLYGRVTYNGHNMDEFVP-------QRTAAYISQHD- 236 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 236 (1412)
..+++||||+|.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4468999999997654433 26799999985
Q ss_pred -CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 237 -VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 237 -~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
.+-|-+||.+.|.-..+.++... .++....+.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 55667899888875544432111 12334456779999999987654
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
+++++.|||||||||.||+||+.+|++|++||||++||+.++.+|++.|+++.+. .++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6788999999999999999999999999999999999999999999999999864 578888899999999999999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhh
Q 000576 396 IILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1412)
|+||++|++++.|+.+++... | ..||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccH-----------------HH
Confidence 999999999999999998541 1 011100 00
Q ss_pred hhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccc
Q 000576 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555 (1412)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~ 555 (1412)
..
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHH
Q 000576 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAG 635 (1412)
Q Consensus 556 ~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~ 635 (1412)
..|.....+
T Consensus 257 ---------------------------a~p~~~~~~-------------------------------------------- 265 (539)
T COG1123 257 ---------------------------AVPRLGDEK-------------------------------------------- 265 (539)
T ss_pred ---------------------------hCCCccccc--------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHH
Q 000576 636 RFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715 (1412)
Q Consensus 636 ~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~n 715 (1412)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Q 000576 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETI 795 (1412)
Q Consensus 716 ef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 795 (1412)
.
T Consensus 266 --------~----------------------------------------------------------------------- 266 (539)
T COG1123 266 --------I----------------------------------------------------------------------- 266 (539)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 000576 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 875 (1412)
....... ..+ ....++++||+..|..++.+. ........+++||||.+++||++||+|+||||||||.++|+|
T Consensus 267 ---~~~~~~~-~~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 267 ---IRLPRRG-PLR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred ---ccccccc-ccc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000000 000 122478999998887543211 011234679999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccC--Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 000576 876 RKTTGYVTGNITISGYPK--KQ---ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948 (1412)
Q Consensus 876 ~~~~~~~~G~i~i~g~~~--~~---~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~ 948 (1412)
...+ .+|.|.++|.+. +. ...++.+-+++||+ .+.|.+||++.+.-....... ....++++++.++++.
T Consensus 340 L~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 340 LLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLEL 415 (539)
T ss_pred CCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHH
Confidence 8765 479999999762 11 12345566677765 578999999999765443322 2256667789999999
Q ss_pred cCCch-hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q 000576 949 VELNL-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1026 (1412)
Q Consensus 949 l~l~~-~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp 1026 (1412)
++|.. ..+.. ...||||||||++|||||+.+|++|++|||||.||+..+..|.+.|+++.++ |.|.|+++||.
T Consensus 416 VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 416 VGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred cCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 99985 23333 3579999999999999999999999999999999999999999999999865 99999999998
Q ss_pred cHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1027 SIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1027 ~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
+ -+-+.|||+++|.+ |++|..||.
T Consensus 491 ~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 491 A-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred H-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 7 47788999999995 899999975
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=687.72 Aligned_cols=217 Identities=19% Similarity=0.330 Sum_probs=178.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC------------
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG------------ 880 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------------ 880 (1412)
..++|+||+|+|+.. ++..+|+|+|++|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999999621 1236999999999999999999999999999999999976541
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCH
Q 000576 881 ----------------------------------------YVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTV 917 (1412)
Q Consensus 881 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv 917 (1412)
+.+|+|.+||.++.+ ..+++.+|||+|++.++ +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 147999999998754 45788899999999887 4799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-------hhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000576 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 990 (1412)
Q Consensus 918 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illl 990 (1412)
+||+.|+. ++.++ +.++++++..++.+. .|+.+|..| ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998752 22333 236667777666543 367777544 56999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhhccEeEEecC---cE-EEEEcCC
Q 000576 991 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRG---GQ-EIYVGPL 1052 (1412)
Q Consensus 991 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g---G~-~~y~G~~ 1052 (1412)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+-
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 46789999999973 67 4578873
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=691.55 Aligned_cols=211 Identities=22% Similarity=0.258 Sum_probs=178.1
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..|+|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|...+ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 36999999999952 223599999999999999999999999999999999997654 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+.+ ..+++.++||||++.++.. |++|||... .+.+ ++.++++++..++.+.. |+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4578899999999998875 999999421 1222 34578888888886543 5556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 963 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
+.+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 457999999999999999996 89999999999999999999999999875 4799999999985 567899999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=631.77 Aligned_cols=463 Identities=21% Similarity=0.294 Sum_probs=352.8
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++++|+|||+++++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|+++..... ++.++||+|++.+
T Consensus 15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 34456999999999999999999999999999999999999861 127999999998764332 3569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++......+. . +. .+....++++++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~-~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGI-M-------------------DY-----------DAMYLRAQKLLAQLKLDINPATPVG 142 (506)
T ss_pred CCCCcHHHHhhhcccccccCC-c-------------------CH-----------HHHHHHHHHHHHHcCCCCCcccchh
Confidence 899999999998753210000 0 00 0112235678999999877766554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+++|++++|+..++.+++|+|++
T Consensus 143 -----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 143 -----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICV 215 (506)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEE
Confidence 6999999999999999999999999999999999999999999999864 356777799999999999999999
Q ss_pred EeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhh
Q 000576 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDE 478 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1412)
|++|++++.|+.+++.. . +..+.+
T Consensus 216 l~~G~i~~~~~~~~~~~---------------~-----------------------------~~~~~~------------ 239 (506)
T PRK13549 216 IRDGRHIGTRPAAGMTE---------------D-----------------------------DIITMM------------ 239 (506)
T ss_pred EECCEEeeecccccCCH---------------H-----------------------------HHHHHh------------
Confidence 99999998886543210 0 000000
Q ss_pred hCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhh
Q 000576 479 LGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIY 558 (1412)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~ 558 (1412)
.. ..
T Consensus 240 ----------------------------------------------------------------~~----~~-------- 243 (506)
T PRK13549 240 ----------------------------------------------------------------VG----RE-------- 243 (506)
T ss_pred ----------------------------------------------------------------hC----cC--------
Confidence 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHH
Q 000576 559 AGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFF 638 (1412)
Q Consensus 559 ~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff 638 (1412)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhc
Q 000576 639 RQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFL 718 (1412)
Q Consensus 639 ~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~ 718 (1412)
.+.
T Consensus 244 -----------------------------------------------------~~~------------------------ 246 (506)
T PRK13549 244 -----------------------------------------------------LTA------------------------ 246 (506)
T ss_pred -----------------------------------------------------ccc------------------------
Confidence 000
Q ss_pred CCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Q 000576 719 GHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEA 798 (1412)
Q Consensus 719 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 798 (1412)
.. + . .
T Consensus 247 ------~~----------------------------------------------------------------~---~--~ 251 (506)
T PRK13549 247 ------LY----------------------------------------------------------------P---R--E 251 (506)
T ss_pred ------cc----------------------------------------------------------------c---c--c
Confidence 00 0 0 0
Q ss_pred CCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 000576 799 NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 799 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~ 878 (1412)
... + ....++++|+++.++.. +++.+|+|+|++|++||++||+||||||||||+++|+|...
T Consensus 252 ~~~-------~-~~~~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 252 PHT-------I-GEVILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred ccC-------C-CCceEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 000 0 01137889998876310 12358999999999999999999999999999999999754
Q ss_pred CCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHc
Q 000576 879 TGYVTGNITISGYPKKQE----TFARISGYCEQND---IHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMFIEEVMELV 949 (1412)
Q Consensus 879 ~~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~~---~~~~~lTv~E~l~f~a~lr~~~--~~~~~~~~~~v~~~l~~l 949 (1412)
+ +.+|+|.++|.++... ..++.++|++|+. .+++.+||.|++.+........ .....+.++.++++++.+
T Consensus 314 ~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (506)
T PRK13549 314 G-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL 392 (506)
T ss_pred C-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc
Confidence 2 1379999999875421 1244689999985 4678899999998753211110 012233445688999999
Q ss_pred CCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcH
Q 000576 950 ELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028 (1412)
Q Consensus 950 ~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~ 1028 (1412)
++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||++||+++
T Consensus 393 ~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~- 466 (506)
T PRK13549 393 KVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP- 466 (506)
T ss_pred CccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-
Confidence 996 4555543 479999999999999999999999999999999999999999999999888999999999986
Q ss_pred HHHHhhccEeEEecCcEEEEEcCCCC
Q 000576 1029 DIFEAFDELFLLKRGGQEIYVGPLGR 1054 (1412)
Q Consensus 1029 ~i~~~fD~v~ll~~gG~~~y~G~~~~ 1054 (1412)
++.+.||++++|++ |+++..|+..+
T Consensus 467 ~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 467 EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 57889999999985 89999887743
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-65 Score=633.78 Aligned_cols=461 Identities=21% Similarity=0.291 Sum_probs=350.6
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 91 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSV 91 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccc
Confidence 34456999999999999999999999999999999999999887 7999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++..... ..+.. +..+ ..+....++.+++.+||++..|+.++
T Consensus 92 ~~~~tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (510)
T PRK09700 92 IDELTVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA 144 (510)
T ss_pred cCCCcHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh
Confidence 899999999987532100 00000 0000 00112345678999999877776654
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.+++|++++
T Consensus 145 -----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsHd~~~~~~~~d~v~~ 217 (510)
T PRK09700 145 -----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--EGTAIVYISHKLAEIRRICDRYTV 217 (510)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999865 366777799999999999999999
Q ss_pred EeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhh
Q 000576 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDE 478 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1412)
|++|++++.|+++++.. . +..+..
T Consensus 218 l~~G~i~~~g~~~~~~~---------------~-----------------------------~~~~~~------------ 241 (510)
T PRK09700 218 MKDGSSVCSGMVSDVSN---------------D-----------------------------DIVRLM------------ 241 (510)
T ss_pred EECCEEeeecchhhCCH---------------H-----------------------------HHHHHh------------
Confidence 99999999887654310 0 000000
Q ss_pred hCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhh
Q 000576 479 LGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIY 558 (1412)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~ 558 (1412)
.. .. ..
T Consensus 242 ----------------------------------------------------------------~~----~~-~~----- 247 (510)
T PRK09700 242 ----------------------------------------------------------------VG----RE-LQ----- 247 (510)
T ss_pred ----------------------------------------------------------------cC----CC-cc-----
Confidence 00 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHH
Q 000576 559 AGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFF 638 (1412)
Q Consensus 559 ~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff 638 (1412)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhc
Q 000576 639 RQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFL 718 (1412)
Q Consensus 639 ~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~ 718 (1412)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Q 000576 719 GHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEA 798 (1412)
Q Consensus 719 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 798 (1412)
... . . . . .
T Consensus 248 -~~~---~-~---------------------------------------------------------------~---~-~ 255 (510)
T PRK09700 248 -NRF---N-A---------------------------------------------------------------M---K-E 255 (510)
T ss_pred -ccc---c-c---------------------------------------------------------------c---c-c
Confidence 000 0 0 0 0 0
Q ss_pred CCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 000576 799 NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 799 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~ 878 (1412)
.... +..+..++++|+++.+. .+|+|+|++|++||+++|+||||||||||+++|+|...
T Consensus 256 ~~~~------~~~~~~l~~~~l~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 256 NVSN------LAHETVFEVRNVTSRDR---------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred cccc------CCCCcEEEEeCccccCC---------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 0000 00012478999986431 27999999999999999999999999999999999765
Q ss_pred CCeEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHH
Q 000576 879 TGYVTGNITISGYPKKQE----TFARISGYCEQN---DIHSPQVTVYESLLYSAWLR---LSP--E-VDSKTRKMFIEEV 945 (1412)
Q Consensus 879 ~~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~---~~~~~~lTv~E~l~f~a~lr---~~~--~-~~~~~~~~~v~~~ 945 (1412)
+ .+|+|.++|.++... ..++.+||++|+ ..+++.+||+|++.+....+ ... . ......++.++++
T Consensus 315 p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (510)
T PRK09700 315 R--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQ 392 (510)
T ss_pred C--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHH
Confidence 4 479999999875321 234568999998 45788999999998653211 000 0 1122233557889
Q ss_pred HHHcCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000576 946 MELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024 (1412)
Q Consensus 946 l~~l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1024 (1412)
++.+++. +..+..+ ..|||||||||+|||+|+.+|+||+|||||+|||+.+...+++.|++++++|.|||+++|
T Consensus 393 l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsH 467 (510)
T PRK09700 393 RELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSS 467 (510)
T ss_pred HHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999996 5556554 479999999999999999999999999999999999999999999999878999999999
Q ss_pred CCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1025 QPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1025 qp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
++. .+.+.||++++|++ |++++.++.
T Consensus 468 d~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 468 ELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 986 57889999999986 799988875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=628.55 Aligned_cols=453 Identities=20% Similarity=0.312 Sum_probs=348.7
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNL 90 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhc
Confidence 33456999999999999999999999999999999999999987 7999999988754321 3469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++.........+ +. .+....++++++.+||++..|..++
T Consensus 91 ~~~~tv~e~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (501)
T PRK10762 91 IPQLTIAENIFLGREFVNRFGRI-------------------DW-----------KKMYAEADKLLARLNLRFSSDKLVG 140 (501)
T ss_pred cCCCcHHHHhhhccccccccCcc-------------------CH-----------HHHHHHHHHHHHHcCCCCCccCchh
Confidence 99999999999864321000000 00 0112235678999999887766554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|++
T Consensus 141 -----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvii~sHd~~~~~~~~d~i~~ 213 (501)
T PRK10762 141 -----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS--QGRGIVYISHRLKEIFEICDDVTV 213 (501)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999854 366777799999999999999999
Q ss_pred EeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhh
Q 000576 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDE 478 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1412)
|++|+++..|+.+++.. ++..+.+
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------------ 237 (501)
T PRK10762 214 FRDGQFIAEREVADLTE--------------------------------------------DSLIEMM------------ 237 (501)
T ss_pred EeCCEEEEecCcCcCCH--------------------------------------------HHHHHHh------------
Confidence 99999998776543210 0000000
Q ss_pred hCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhh
Q 000576 479 LGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIY 558 (1412)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~ 558 (1412)
+. .
T Consensus 238 ----------------------------------------------------------------~~-----~-------- 240 (501)
T PRK10762 238 ----------------------------------------------------------------VG-----R-------- 240 (501)
T ss_pred ----------------------------------------------------------------cC-----C--------
Confidence 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHH
Q 000576 559 AGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFF 638 (1412)
Q Consensus 559 ~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff 638 (1412)
+
T Consensus 241 --------------------------------~----------------------------------------------- 241 (501)
T PRK10762 241 --------------------------------K----------------------------------------------- 241 (501)
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhc
Q 000576 639 RQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFL 718 (1412)
Q Consensus 639 ~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~ 718 (1412)
.+
T Consensus 242 -----------------------------------------------------~~------------------------- 243 (501)
T PRK10762 242 -----------------------------------------------------LE------------------------- 243 (501)
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred CCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Q 000576 719 GHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEA 798 (1412)
Q Consensus 719 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 798 (1412)
. .. +
T Consensus 244 --~---~~----------------------------------------------------------------~------- 247 (501)
T PRK10762 244 --D---QY----------------------------------------------------------------P------- 247 (501)
T ss_pred --c---cc----------------------------------------------------------------c-------
Confidence 0 00 0
Q ss_pred CCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC
Q 000576 799 NQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 799 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~ 878 (1412)
... .+..+..++++|++. .+|+|+|++|++||+++|+||||||||||+++|+|...
T Consensus 248 ~~~------~~~~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 248 RLD------KAPGEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred ccc------cCCCCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 000 000012467888762 26899999999999999999999999999999999765
Q ss_pred CCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHH
Q 000576 879 TGYVTGNITISGYPKKQE----TFARISGYCEQND---IHSPQVTVYESLLYSAWLRLS---PEVDSKTRKMFIEEVMEL 948 (1412)
Q Consensus 879 ~~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~~---~~~~~lTv~E~l~f~a~lr~~---~~~~~~~~~~~v~~~l~~ 948 (1412)
+ .+|+|.++|.++... ..++.+||++|++ .+++.+||.|++.+....... ......+.++.++++++.
T Consensus 304 p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (501)
T PRK10762 304 R--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381 (501)
T ss_pred C--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHh
Confidence 4 479999999875421 2345689999995 477889999999875321110 011223334568899999
Q ss_pred cCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000576 949 VELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1027 (1412)
Q Consensus 949 l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~ 1027 (1412)
+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 382 ~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 382 FNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred cCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 9994 4555543 479999999999999999999999999999999999999999999999878999999999987
Q ss_pred HHHHHhhccEeEEecCcEEEEEcCCCC
Q 000576 1028 IDIFEAFDELFLLKRGGQEIYVGPLGR 1054 (1412)
Q Consensus 1028 ~~i~~~fD~v~ll~~gG~~~y~G~~~~ 1054 (1412)
.+.+.||++++|++ |++++.|+...
T Consensus 457 -~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 457 -EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred -HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 57889999999985 89999998753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=682.65 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=177.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999952 22469999999999999999999999999999999999754 37999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+.+ ..+++.++|+||++.+++. |+||||... ...+ ++.++++++.+++.+.. |+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~------~~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY------EQWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc------cCCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 764 4567889999999999875 999999421 1122 34578889988886543 444554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
++.+||||||||+||||||+++|+||+||||||+||..++..|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999986 4567999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++.+|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=633.57 Aligned_cols=490 Identities=21% Similarity=0.250 Sum_probs=353.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCC----------CcC------c-cce
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMD----------EFV------P-QRT 228 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 228 (1412)
.++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999886 799999986431 111 1 136
Q ss_pred EEEEcCCC--CcCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 000576 229 AAYISQHD--VHIGEMTVRETLAFSARCQ-GVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILK 305 (1412)
Q Consensus 229 ~~yv~Q~d--~~~~~lTV~e~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 305 (1412)
+|||+|++ .+++.+||+||+.++.+.. +.. ..+....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------------------------------REEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 99999986 5778899999999975432 110 0011234567899
Q ss_pred HhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 000576 306 ILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP 385 (1412)
Q Consensus 306 ~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~ 385 (1412)
.+||++.. . .-++.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. .+++|+.++|+
T Consensus 152 ~~gL~~~~-~-~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHd 228 (623)
T PRK10261 152 QVRIPEAQ-T-ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHD 228 (623)
T ss_pred HCCCCChh-h-HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCC
Confidence 99996421 0 113345579999999999999999999999999999999999999999999998753 35677779999
Q ss_pred hhhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHH
Q 000576 386 APEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADA 465 (1412)
Q Consensus 386 ~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1412)
..++.+++|+|++|++|++++.|+++++.+ .|.+....+++. .
T Consensus 229 l~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~-----------------------------~ 271 (623)
T PRK10261 229 MGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLA-----------------------------A 271 (623)
T ss_pred HHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhh-----------------------------c
Confidence 999999999999999999999998876531 010000000000 0
Q ss_pred HHhcchhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHccc
Q 000576 466 FQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRT 545 (1412)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~ 545 (1412)
.+. . ....
T Consensus 272 ---------------~~~--~----~~~~--------------------------------------------------- 279 (623)
T PRK10261 272 ---------------VPQ--L----GAMK--------------------------------------------------- 279 (623)
T ss_pred ---------------cCc--c----cccc---------------------------------------------------
Confidence 000 0 0000
Q ss_pred CCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhh
Q 000576 546 KMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTY 625 (1412)
Q Consensus 546 ~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y 625 (1412)
. .. .. . + . |
T Consensus 280 ~--~~-~~-~-----------------------------------~----~--------------~-------------- 288 (623)
T PRK10261 280 G--LD-YP-R-----------------------------------R----F--------------P-------------- 288 (623)
T ss_pred c--cc-CC-c-----------------------------------c----c--------------c--------------
Confidence 0 00 00 0 0 0 0
Q ss_pred hccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHH
Q 000576 626 YVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPL 705 (1412)
Q Consensus 626 ~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~ 705 (1412)
. .
T Consensus 289 ---------------------------------------------------------------~--~------------- 290 (623)
T PRK10261 289 ---------------------------------------------------------------L--I------------- 290 (623)
T ss_pred ---------------------------------------------------------------c--c-------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Q 000576 706 MYAQNAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRR 785 (1412)
Q Consensus 706 ~ya~~al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~ 785 (1412)
. ...+ .. .
T Consensus 291 --------------~--~~~~--~~----------------------------------------------------~-- 298 (623)
T PRK10261 291 --------------S--LEHP--AK----------------------------------------------------Q-- 298 (623)
T ss_pred --------------c--cccc--cc----------------------------------------------------c--
Confidence 0 0000 00 0
Q ss_pred cccccccccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCC
Q 000576 786 DSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAG 865 (1412)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaG 865 (1412)
.+.. .. . . .+.....++++||++.|+..... . ......+.+|+||||+|++||++||+|+||||
T Consensus 299 ----~~~~-~~--~-~------~~~~~~~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsG 362 (623)
T PRK10261 299 ----EPPI-EQ--D-T------VVDGEPILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSG 362 (623)
T ss_pred ----Cccc-cc--c-c------ccCCCceEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCC
Confidence 0000 00 0 0 00001248999999888421000 0 00001246999999999999999999999999
Q ss_pred hhhHHhhhcCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 000576 866 KTTLMDVLAGRKTTGYVTGNITISGYPKKQE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKT 937 (1412)
Q Consensus 866 KTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~ 937 (1412)
||||+++|+|...+ .+|+|.++|.++... .+++.++|++|++ .+++.+||.|++.+...... ....++
T Consensus 363 KSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~ 438 (623)
T PRK10261 363 KSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKA 438 (623)
T ss_pred HHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHH
Confidence 99999999997654 479999999875321 2355799999986 47889999999987643321 112334
Q ss_pred HHHHHHHHHHHcCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000576 938 RKMFIEEVMELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1015 (1412)
Q Consensus 938 ~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~- 1015 (1412)
.++.+.++++.++|. ...+..+ ..|||||||||+|||+|+.+|++|||||||+|||..++..+++.|++++++
T Consensus 439 ~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~ 513 (623)
T PRK10261 439 AAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF 513 (623)
T ss_pred HHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 456788999999995 4555543 479999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1016 g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|.|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 514 g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 514 GIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 899999999987 57788999999985 899999986
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=623.72 Aligned_cols=449 Identities=21% Similarity=0.306 Sum_probs=345.5
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCceeEEEECC----------------------
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRLYGRVTYNG---------------------- 217 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G---------------------- 217 (1412)
+++++++|+|+|+++.+|++++|+|||||||||||++|+|.+ .|+ +|+|.++|
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred EECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccc
Confidence 344557999999999999999999999999999999999996 565 79999972
Q ss_pred -ccCC-------Cc------CccceEEEEcCC-CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCCh
Q 000576 218 -HNMD-------EF------VPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL 282 (1412)
Q Consensus 218 -~~~~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 282 (1412)
.++. .. ..++.++|++|+ +.+++.+||+||+.|+....+.. .
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~-~---------------------- 142 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE-G---------------------- 142 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC-H----------------------
Confidence 2211 00 013568999997 67788899999999865332210 0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHH
Q 000576 283 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQ 362 (1412)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~ 362 (1412)
.+....++++++.+||++..+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus 143 -----------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 206 (520)
T TIGR03269 143 -----------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKL 206 (520)
T ss_pred -----------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHH
Confidence 011234567899999987666544 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchh
Q 000576 363 IVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKD 442 (1412)
Q Consensus 363 i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~ 442 (1412)
+.+.|+++++. .+++|++++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 207 l~~~l~~l~~~-~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~------------------------ 261 (520)
T TIGR03269 207 VHNALEEAVKA-SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM------------------------ 261 (520)
T ss_pred HHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH------------------------
Confidence 99999998653 35677779999999999999999999999998876654311000
Q ss_pred hhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchH
Q 000576 443 QEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSF 522 (1412)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~ 522 (1412)
.
T Consensus 262 ------------------------~------------------------------------------------------- 262 (520)
T TIGR03269 262 ------------------------E------------------------------------------------------- 262 (520)
T ss_pred ------------------------h-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHH
Q 000576 523 VYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYA 602 (1412)
Q Consensus 523 ~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~ 602 (1412)
..
T Consensus 263 -------------------------------~~----------------------------------------------- 264 (520)
T TIGR03269 263 -------------------------------GV----------------------------------------------- 264 (520)
T ss_pred -------------------------------hc-----------------------------------------------
Confidence 00
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 000576 603 FPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYAL 682 (1412)
Q Consensus 603 l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~ 682 (1412)
..
T Consensus 265 ------------------------------------------------------------~~------------------ 266 (520)
T TIGR03269 265 ------------------------------------------------------------SE------------------ 266 (520)
T ss_pred ------------------------------------------------------------hh------------------
Confidence 00
Q ss_pred hcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHH
Q 000576 683 GGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFII 762 (1412)
Q Consensus 683 ~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~ 762 (1412)
+.. .
T Consensus 267 ---------~~~-------------------------------~------------------------------------ 270 (520)
T TIGR03269 267 ---------VEK-------------------------------E------------------------------------ 270 (520)
T ss_pred ---------hcc-------------------------------c------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceee
Q 000576 763 LFNIGFALALSFLNWSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVL 842 (1412)
Q Consensus 763 ~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i 842 (1412)
. ..+ .....++++|++++|+.. ..+.+.+
T Consensus 271 ---------------------------------~--~~~--------~~~~~l~~~~l~~~~~~~--------~~~~~~i 299 (520)
T TIGR03269 271 ---------------------------------C--EVE--------VGEPIIKVRNVSKRYISV--------DRGVVKA 299 (520)
T ss_pred ---------------------------------c--ccC--------CCCceEEEeccEEEeccC--------CCCCceE
Confidence 0 000 001147899999887410 0122469
Q ss_pred ecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEc-Ccc---CCc------ccccceEEEeccCCCCC
Q 000576 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITIS-GYP---KKQ------ETFARISGYCEQNDIHS 912 (1412)
Q Consensus 843 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~~~yv~Q~~~~~ 912 (1412)
|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++ |.+ ... ...++.++|++|++.++
T Consensus 300 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 9999999999999999999999999999999997653 47999996 532 111 12245689999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-----hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000576 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-----LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 987 (1412)
Q Consensus 913 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~i 987 (1412)
+.+||.|++.+...+. ......++.++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++
T Consensus 378 ~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~l 448 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRI 448 (520)
T ss_pred CCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998754321 122333456788999999964 23433 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 988 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 988 lllDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.||++++|++ |+++..|++
T Consensus 449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999764 899999999987 57788999999985 799998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=621.70 Aligned_cols=455 Identities=20% Similarity=0.286 Sum_probs=346.0
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCcC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 239 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 239 (1412)
+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF 98 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence 3456999999999999999999999999999999999999887 7999999988754332 24699999998889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.|+.... + +....++++++.+||++..+..++
T Consensus 99 ~~~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 139 (510)
T PRK15439 99 PNLSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG- 139 (510)
T ss_pred CCCcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh-
Confidence 9999999998853110 0 011234568899999877766554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.++||+|++|
T Consensus 140 ----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 140 ----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA--QGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999865 3667777999999999999999999
Q ss_pred eCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhh
Q 000576 400 SDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1412)
++|++++.|+++++... +.. +.+..
T Consensus 214 ~~G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~----------- 238 (510)
T PRK15439 214 RDGTIALSGKTADLSTD---------------DII-----------------------------QAITP----------- 238 (510)
T ss_pred ECCEEEEecChHHcCHH---------------HHH-----------------------------HHHhC-----------
Confidence 99999999987664210 000 00000
Q ss_pred CCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhh
Q 000576 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYA 559 (1412)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~ 559 (1412)
. ... .. ....
T Consensus 239 -~-----~~~-------------------------------------------------------~~-----~~~~---- 248 (510)
T PRK15439 239 -A-----ARE-------------------------------------------------------KS-----LSAS---- 248 (510)
T ss_pred -c-----ccc-------------------------------------------------------cc-----cccc----
Confidence 0 000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHH
Q 000576 560 GATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFR 639 (1412)
Q Consensus 560 g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 639 (1412)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcC
Q 000576 640 QYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719 (1412)
Q Consensus 640 ~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~ 719 (1412)
..
T Consensus 249 -----------------------------------------------------~~------------------------- 250 (510)
T PRK15439 249 -----------------------------------------------------QK------------------------- 250 (510)
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred CcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccC
Q 000576 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEAN 799 (1412)
Q Consensus 720 ~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1412)
.. ..+ + . .. ..
T Consensus 251 --~~-----------------~~~---------------------------------~-------------~---~~-~~ 261 (510)
T PRK15439 251 --LW-----------------LEL---------------------------------P-------------G---NR-RQ 261 (510)
T ss_pred --cc-----------------ccc---------------------------------c-------------c---cc-cc
Confidence 00 000 0 0 00 00
Q ss_pred CccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC
Q 000576 800 QPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT 879 (1412)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~ 879 (1412)
. +..+..++++|++. .+|+|||+++++||++||+||||||||||+++|+|...+
T Consensus 262 ~--------~~~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 262 Q--------AAGAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred c--------CCCCceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 0 00112477888872 158999999999999999999999999999999997554
Q ss_pred CeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000576 880 GYVTGNITISGYPKKQE----TFARISGYCEQND---IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN 952 (1412)
Q Consensus 880 ~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~~---~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~ 952 (1412)
.+|+|.++|.++... ..++.++|++|+. .+++.+|+.|++......+..........++.++++++.+++.
T Consensus 316 --~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 316 --RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK 393 (510)
T ss_pred --CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence 379999999875431 1234689999974 4778899999986421111110011122335678999999996
Q ss_pred -hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 000576 953 -LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031 (1412)
Q Consensus 953 -~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~ 1031 (1412)
+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++.|.|||+++|++. ++.
T Consensus 394 ~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~ 467 (510)
T PRK15439 394 FNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIE 467 (510)
T ss_pred CCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHH
Confidence 5555543 479999999999999999999999999999999999999999999999888999999999987 588
Q ss_pred HhhccEeEEecCcEEEEEcCCC
Q 000576 1032 EAFDELFLLKRGGQEIYVGPLG 1053 (1412)
Q Consensus 1032 ~~fD~v~ll~~gG~~~y~G~~~ 1053 (1412)
+.||++++|++ |++++.|.++
T Consensus 468 ~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 468 QMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred HhCCEEEEEEC-CEEEEEEccc
Confidence 89999999985 8999888764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=624.46 Aligned_cols=464 Identities=22% Similarity=0.291 Sum_probs=348.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCcCc-------cceEEEEcCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEFVP-------QRTAAYISQHD 236 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 236 (1412)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 0137999999998754321 14699999985
Q ss_pred C--cCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc-
Q 000576 237 V--HIGEMTVRETLAFSARCQ-GVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC- 312 (1412)
Q Consensus 237 ~--~~~~lTV~e~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~- 312 (1412)
. +.+.+||+|++.+..... +.. ..+....++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 3 567789999987653211 100 00112345678999999752
Q ss_pred --ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 000576 313 --ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY 390 (1412)
Q Consensus 313 --~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~ 390 (1412)
.|.. +..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+.+||+++|+..++.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 3444 4479999999999999999999999999999999999999999999998653 3567777999999999
Q ss_pred hhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcc
Q 000576 391 DLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFS 470 (1412)
Q Consensus 391 ~~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1412)
+++|+|++|++|++++.|+++++... |. . ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~--------~~-------- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------H--------PY-------- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------C--------HH--------
Confidence 99999999999999999887654210 00 0 00
Q ss_pred hhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 000576 471 VGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRD 550 (1412)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~ 550 (1412)
.+.+ +...
T Consensus 253 ----------------------------------------~~~~----------------------------~~~~---- 260 (529)
T PRK15134 253 ----------------------------------------TQKL----------------------------LNSE---- 260 (529)
T ss_pred ----------------------------------------HHHH----------------------------HHhC----
Confidence 0000 0000
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhcccc
Q 000576 551 SVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGF 630 (1412)
Q Consensus 551 ~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~ 630 (1412)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHH
Q 000576 631 DPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQN 710 (1412)
Q Consensus 631 ~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~ 710 (1412)
+.
T Consensus 261 --------------------------------------------------------------~~---------------- 262 (529)
T PRK15134 261 --------------------------------------------------------------PS---------------- 262 (529)
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred HHHHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 000576 711 AIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQ 790 (1412)
Q Consensus 711 al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~ 790 (1412)
..
T Consensus 263 ---------~~--------------------------------------------------------------------- 264 (529)
T PRK15134 263 ---------GD--------------------------------------------------------------------- 264 (529)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHH
Q 000576 791 SLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM 870 (1412)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl 870 (1412)
+ .. ... + .+..++++|+++.|+..... .. ...+.+.+|+|||++|++||++||+||||||||||+
T Consensus 265 ~---~~--~~~-------~-~~~~l~~~~l~~~~~~~~~~-~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl 329 (529)
T PRK15134 265 P---VP--LPE-------P-ASPLLDVEQLQVAFPIRKGI-LK-RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG 329 (529)
T ss_pred c---cc--cCC-------C-CCCcccccCcEEEeecCccc-cc-cccccceeeecceeEEcCCCEEEEECCCCCCHHHHH
Confidence 0 00 000 0 01137788998877421000 00 000124699999999999999999999999999999
Q ss_pred hhhcCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 000576 871 DVLAGRKTTGYVTGNITISGYPKKQE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFI 942 (1412)
Q Consensus 871 ~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v 942 (1412)
++|+|... .+|+|.++|.++... .+++.++|++|+. .+++.+||.|++.+....+.. .....+.++.+
T Consensus 330 k~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~ 405 (529)
T PRK15134 330 LALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQV 405 (529)
T ss_pred HHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHH
Confidence 99999753 379999999875321 1245689999986 477889999999886533211 12233445668
Q ss_pred HHHHHHcCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 000576 943 EEVMELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVV 1020 (1412)
Q Consensus 943 ~~~l~~l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi 1020 (1412)
+++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||
T Consensus 406 ~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi 480 (529)
T PRK15134 406 IAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480 (529)
T ss_pred HHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEE
Confidence 8999999996 3555443 479999999999999999999999999999999999999999999999865 89999
Q ss_pred EEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1021 ~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
+++|++. .+.+.||++++|++ |+++..|+.
T Consensus 481 ~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 481 FISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred EEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999986 57788999999985 799998875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=618.44 Aligned_cols=463 Identities=20% Similarity=0.274 Sum_probs=348.8
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDV 237 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~ 237 (1412)
+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|+++..... ++.++||+|++.
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 88 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT 88 (500)
T ss_pred EeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc
Confidence 344557999999999999999999999999999999999998761 127999999998765332 246999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc-ccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA-DTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-dt~ 316 (1412)
+++.+||+||+.++......+...+ ..+....++.+++.+||++.. ++.
T Consensus 89 ~~~~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (500)
T TIGR02633 89 LVPELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRP 138 (500)
T ss_pred cCCCCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCc
Confidence 8899999999988643210000000 001122456789999997654 333
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.++||+|
T Consensus 139 ~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i 211 (500)
T TIGR02633 139 V-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTI 211 (500)
T ss_pred h-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999864 3667777999999999999999
Q ss_pred EEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhh
Q 000576 397 ILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILG 476 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1412)
++|++|++++.|+.+++.. .+..+.
T Consensus 212 ~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~----------- 236 (500)
T TIGR02633 212 CVIRDGQHVATKDMSTMSE--------------------------------------------DDIITM----------- 236 (500)
T ss_pred EEEeCCeEeeecCcccCCH--------------------------------------------HHHHHH-----------
Confidence 9999999987664321100 000000
Q ss_pred hhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccch
Q 000576 477 DELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGV 556 (1412)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~ 556 (1412)
+.
T Consensus 237 -----------------------------------------------------------------~~------------- 238 (500)
T TIGR02633 237 -----------------------------------------------------------------MV------------- 238 (500)
T ss_pred -----------------------------------------------------------------Hh-------------
Confidence 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHH
Q 000576 557 IYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGR 636 (1412)
Q Consensus 557 ~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ 636 (1412)
+.
T Consensus 239 ------------------------------------------------------------------------~~------ 240 (500)
T TIGR02633 239 ------------------------------------------------------------------------GR------ 240 (500)
T ss_pred ------------------------------------------------------------------------Cc------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHH
Q 000576 637 FFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNE 716 (1412)
Q Consensus 637 ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~ne 716 (1412)
..+.
T Consensus 241 ------------------------------------------------------~~~~---------------------- 244 (500)
T TIGR02633 241 ------------------------------------------------------EITS---------------------- 244 (500)
T ss_pred ------------------------------------------------------cccc----------------------
Confidence 0000
Q ss_pred hcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 000576 717 FLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETIT 796 (1412)
Q Consensus 717 f~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 796 (1412)
.. +
T Consensus 245 --------~~----------------------------------------------------------------~----- 247 (500)
T TIGR02633 245 --------LY----------------------------------------------------------------P----- 247 (500)
T ss_pred --------cc----------------------------------------------------------------c-----
Confidence 00 0
Q ss_pred ccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCC
Q 000576 797 EANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~ 876 (1412)
...... .+..++++|+++.++. .+++.+|+|+|+++++||++||+||||||||||+++|+|.
T Consensus 248 ~~~~~~--------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 248 HEPHEI--------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred ccccCC--------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 000000 0114789999876521 0123589999999999999999999999999999999997
Q ss_pred CCCCeEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHH--hcCCCCCCHHHHHHHHHHHHH
Q 000576 877 KTTGYVTGNITISGYPKKQ----ETFARISGYCEQND---IHSPQVTVYESLLYSAW--LRLSPEVDSKTRKMFIEEVME 947 (1412)
Q Consensus 877 ~~~~~~~G~i~i~g~~~~~----~~~~~~~~yv~Q~~---~~~~~lTv~E~l~f~a~--lr~~~~~~~~~~~~~v~~~l~ 947 (1412)
.++ ..+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.+... ............++.++++++
T Consensus 310 ~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 388 (500)
T TIGR02633 310 YPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQ 388 (500)
T ss_pred CCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHH
Confidence 642 137999999987642 12345689999995 57889999999987532 111011122334456889999
Q ss_pred HcCCch-hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000576 948 LVELNL-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026 (1412)
Q Consensus 948 ~l~l~~-~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp 1026 (1412)
.+++.+ ..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++||++
T Consensus 389 ~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 389 RLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred hcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 999963 345443 47999999999999999999999999999999999999999999999988899999999998
Q ss_pred cHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1027 SIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1027 ~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
+ ++.+.||++++|++ |+++..++.
T Consensus 464 ~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 464 A-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred H-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 7 57889999999985 789888765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=616.11 Aligned_cols=453 Identities=21% Similarity=0.298 Sum_probs=344.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCcC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVHI 239 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 239 (1412)
+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhcc
Confidence 3456999999999999999999999999999999999999887 7999999988753321 35799999998889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++......+. . + ..+....++.+++.+||++..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~-----------------~---~-----------~~~~~~~~~~~l~~~~l~~~~~~~~-- 138 (501)
T PRK11288 92 PEMTVAENLYLGQLPHKGGI-----------------V---N-----------RRLLNYEAREQLEHLGVDIDPDTPL-- 138 (501)
T ss_pred CCCCHHHHHHhcccccccCC-----------------C---C-----------HHHHHHHHHHHHHHcCCCCCcCCch--
Confidence 99999999998632100000 0 0 0011223566899999986666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.+++|+|++|
T Consensus 139 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 139 ---KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999854 3667777999999999999999999
Q ss_pred eCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhhhhhh
Q 000576 400 SDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILGDEL 479 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1412)
++|+++..++..+. .+.++..+.+
T Consensus 214 ~~G~i~~~~~~~~~-------------------------------------------~~~~~~~~~~------------- 237 (501)
T PRK11288 214 KDGRYVATFDDMAQ-------------------------------------------VDRDQLVQAM------------- 237 (501)
T ss_pred ECCEEEeecCcccc-------------------------------------------CCHHHHHHHh-------------
Confidence 99999864421000 0000000000
Q ss_pred CCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccchhhh
Q 000576 480 GIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDGVIYA 559 (1412)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~~~~~ 559 (1412)
... .
T Consensus 238 ---------------------------------------------------------------~~~----~--------- 241 (501)
T PRK11288 238 ---------------------------------------------------------------VGR----E--------- 241 (501)
T ss_pred ---------------------------------------------------------------cCC----C---------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHHHHHH
Q 000576 560 GATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFR 639 (1412)
Q Consensus 560 g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 639 (1412)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHHHhcC
Q 000576 640 QYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVNEFLG 719 (1412)
Q Consensus 640 ~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~nef~~ 719 (1412)
...
T Consensus 242 ----------------------------------------------------~~~------------------------- 244 (501)
T PRK11288 242 ----------------------------------------------------IGD------------------------- 244 (501)
T ss_pred ----------------------------------------------------ccc-------------------------
Confidence 000
Q ss_pred CcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccC
Q 000576 720 HSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETITEAN 799 (1412)
Q Consensus 720 ~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1412)
.. . .. .
T Consensus 245 -~~--------------------------------------------------------------------~---~~--~ 250 (501)
T PRK11288 245 -IY--------------------------------------------------------------------G---YR--P 250 (501)
T ss_pred -cc--------------------------------------------------------------------c---cc--c
Confidence 00 0 00 0
Q ss_pred CccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC
Q 000576 800 QPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT 879 (1412)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~ 879 (1412)
. +..+..++++|+++. .+++|+|++|++||++||+||||||||||+++|+|...+
T Consensus 251 ~--------~~~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p 305 (501)
T PRK11288 251 R--------PLGEVRLRLDGLKGP-----------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR 305 (501)
T ss_pred c--------CCCCcEEEEeccccC-----------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC
Confidence 0 000124778888631 379999999999999999999999999999999997653
Q ss_pred CeEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCC-C--CCHHHHHHHHHHHHHHc
Q 000576 880 GYVTGNITISGYPKKQ----ETFARISGYCEQND---IHSPQVTVYESLLYSAWLRLSP-E--VDSKTRKMFIEEVMELV 949 (1412)
Q Consensus 880 ~~~~G~i~i~g~~~~~----~~~~~~~~yv~Q~~---~~~~~lTv~E~l~f~a~lr~~~-~--~~~~~~~~~v~~~l~~l 949 (1412)
.+|+|.++|.++.. ...++.++|++|++ .+++.+|+.|++.+........ . ......++.++++++.+
T Consensus 306 --~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (501)
T PRK11288 306 --TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL 383 (501)
T ss_pred --CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc
Confidence 47999999987532 12245689999985 4788999999998653211100 0 01222345678899999
Q ss_pred CCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcH
Q 000576 950 ELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1028 (1412)
Q Consensus 950 ~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~ 1028 (1412)
++. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++++.|.|||+++||+.
T Consensus 384 ~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~- 457 (501)
T PRK11288 384 NIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP- 457 (501)
T ss_pred CcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-
Confidence 994 5555554 479999999999999999999999999999999999999999999999888999999999987
Q ss_pred HHHHhhccEeEEecCcEEEEEcCCCC
Q 000576 1029 DIFEAFDELFLLKRGGQEIYVGPLGR 1054 (1412)
Q Consensus 1029 ~i~~~fD~v~ll~~gG~~~y~G~~~~ 1054 (1412)
++.+.+|++++|++ |++++.|..++
T Consensus 458 ~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 458 EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 58889999999985 89999998754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=607.84 Aligned_cols=457 Identities=18% Similarity=0.262 Sum_probs=346.2
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcC
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQ 234 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q 234 (1412)
++++++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|
T Consensus 4 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred eEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 344455567999999999999999999999999999999999999887 7999999998754322 356999999
Q ss_pred CCCcCCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 235 HDVHIGEMTVRETLAFSAR-CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 235 ~d~~~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
++.+++.+||+||+.++.. ..+.. . +. .+....++.+++.+|+++..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~--~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~ 128 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMF--V-------------------DQ-----------DKMYRDTKAIFDELDIDIDP 128 (491)
T ss_pred ccccccCCCHHHHhhcccccccccc--c-------------------CH-----------HHHHHHHHHHHHHcCCCCCc
Confidence 9888899999999987531 11000 0 00 01112356688999998776
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
++.++ .|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++++ .+.+|+.++|+.+++.++|
T Consensus 129 ~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~ 201 (491)
T PRK10982 129 RAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLC 201 (491)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhC
Confidence 65554 6999999999999999999999999999999999999999999999864 3567777999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhh
Q 000576 394 DDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQ 473 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1412)
|+|++|++|+++..|+++++.. .+..+.+
T Consensus 202 d~i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------- 230 (491)
T PRK10982 202 DEITILRDGQWIATQPLAGLTM--------------------------------------------DKIIAMM------- 230 (491)
T ss_pred CEEEEEECCEEEeecChhhCCH--------------------------------------------HHHHHHH-------
Confidence 9999999999998876533200 0000000
Q ss_pred hhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccc
Q 000576 474 ILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVT 553 (1412)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~ 553 (1412)
..
T Consensus 231 ---------------------------------------------------------------------~~--------- 232 (491)
T PRK10982 231 ---------------------------------------------------------------------VG--------- 232 (491)
T ss_pred ---------------------------------------------------------------------hC---------
Confidence 00
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCC
Q 000576 554 DGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPN 633 (1412)
Q Consensus 554 ~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~ 633 (1412)
+
T Consensus 233 -------------------------------------~------------------------------------------ 233 (491)
T PRK10982 233 -------------------------------------R------------------------------------------ 233 (491)
T ss_pred -------------------------------------C------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHH
Q 000576 634 AGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIM 713 (1412)
Q Consensus 634 ~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~ 713 (1412)
. ..
T Consensus 234 ------------------------------~---------------------------~~-------------------- 236 (491)
T PRK10982 234 ------------------------------S---------------------------LT-------------------- 236 (491)
T ss_pred ------------------------------C---------------------------cc--------------------
Confidence 0 00
Q ss_pred HHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Q 000576 714 VNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLE 793 (1412)
Q Consensus 714 ~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~ 793 (1412)
..
T Consensus 237 ------~~------------------------------------------------------------------------ 238 (491)
T PRK10982 237 ------QR------------------------------------------------------------------------ 238 (491)
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhh
Q 000576 794 TITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873 (1412)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L 873 (1412)
....... + .+..++++|+++.. +.+|+|||+.+++||++||+||||||||||+++|
T Consensus 239 -~~~~~~~-------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l 294 (491)
T PRK10982 239 -FPDKENK-------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETL 294 (491)
T ss_pred -cccccCC-------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHH
Confidence 0000000 0 11247899998752 1389999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCCC---CCCCCCHHHHHHHHHH---hcCCCCCCHHHHHHHHH
Q 000576 874 AGRKTTGYVTGNITISGYPKKQE----TFARISGYCEQNDI---HSPQVTVYESLLYSAW---LRLSPEVDSKTRKMFIE 943 (1412)
Q Consensus 874 ~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~~~---~~~~lTv~E~l~f~a~---lr~~~~~~~~~~~~~v~ 943 (1412)
+|...+ .+|+|.++|.++... ..++.++|++|+.. +++.+|+.++..+... ............++.++
T Consensus 295 ~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T PRK10982 295 FGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ 372 (491)
T ss_pred cCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHH
Confidence 997654 479999999876431 12445899999853 5788888877433211 01000011223345678
Q ss_pred HHHHHcCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000576 944 EVMELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1022 (1412)
Q Consensus 944 ~~l~~l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 1022 (1412)
++++.+++. +..+.. +..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.+.|+|||++
T Consensus 373 ~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~v 447 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447 (491)
T ss_pred HHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEE
Confidence 889999885 334443 34799999999999999999999999999999999999999999999998889999999
Q ss_pred ecCCcHHHHHhhccEeEEecCcEEEEEcCCC
Q 000576 1023 IHQPSIDIFEAFDELFLLKRGGQEIYVGPLG 1053 (1412)
Q Consensus 1023 ~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~ 1053 (1412)
||+++ ++.++||++++|++ |+++..++..
T Consensus 448 sHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 448 SSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred CCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99987 57789999999985 8999877664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=598.07 Aligned_cols=451 Identities=19% Similarity=0.258 Sum_probs=332.0
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCc-
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVH- 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~- 238 (1412)
++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..
T Consensus 13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTD 89 (490)
T ss_pred cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchh
Confidence 33456999999999999999999999999999999999999887 7999999976643221 2458999997532
Q ss_pred -C------CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 239 -I------GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 239 -~------~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
+ ..+||+|++.++. +....++.+++.+||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~ 127 (490)
T PRK10938 90 MLSPGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITA 127 (490)
T ss_pred hcccchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHh
Confidence 1 1457777664310 01123456789999987
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
..|..++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.+
T Consensus 128 ~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tvii~tH~~~~~~~ 200 (490)
T PRK10938 128 LLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ--SGITLVLVLNRFDEIPD 200 (490)
T ss_pred hhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHh
Confidence 7766554 6999999999999999999999999999999999999999999999865 35677778999999999
Q ss_pred hcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcch
Q 000576 392 LFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSV 471 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1412)
+||+|++|++|+++.+|+++++.+. +.+.... .
T Consensus 201 ~~d~v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~----------------------------~---- 233 (490)
T PRK10938 201 FVQFAGVLADCTLAETGEREEILQQ---------------ALVAQLA----------------------------H---- 233 (490)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhcc---------------hhhhhhh----------------------------h----
Confidence 9999999999999999887654210 0000000 0
Q ss_pred hhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCc
Q 000576 472 GQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDS 551 (1412)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~ 551 (1412)
+ ..
T Consensus 234 ----------------------------------------~-------------------------------------~~ 236 (490)
T PRK10938 234 ----------------------------------------S-------------------------------------EQ 236 (490)
T ss_pred ----------------------------------------h-------------------------------------hc
Confidence 0 00
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccC
Q 000576 552 VTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFD 631 (1412)
Q Consensus 552 ~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~ 631 (1412)
... .
T Consensus 237 ~~~---------------------------------------------------------------------------~- 240 (490)
T PRK10938 237 LEG---------------------------------------------------------------------------V- 240 (490)
T ss_pred cCc---------------------------------------------------------------------------c-
Confidence 000 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHH
Q 000576 632 PNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNA 711 (1412)
Q Consensus 632 ~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~a 711 (1412)
..|.
T Consensus 241 -----------------------------------------------------------~~~~----------------- 244 (490)
T PRK10938 241 -----------------------------------------------------------QLPE----------------- 244 (490)
T ss_pred -----------------------------------------------------------ccCc-----------------
Confidence 0000
Q ss_pred HHHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Q 000576 712 IMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQS 791 (1412)
Q Consensus 712 l~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~ 791 (1412)
.. . +
T Consensus 245 ------------~~----~------------------------------------------------------------~ 248 (490)
T PRK10938 245 ------------PD----E------------------------------------------------------------P 248 (490)
T ss_pred ------------cc----c------------------------------------------------------------c
Confidence 00 0 0
Q ss_pred cccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHh
Q 000576 792 LETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871 (1412)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~ 871 (1412)
.. .... +.....++++|+++.|+ ++.+|+|+|+.+++||+++|+||||||||||++
T Consensus 249 ---~~--~~~~------~~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~ 304 (490)
T PRK10938 249 ---SA--RHAL------PANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLS 304 (490)
T ss_pred ---cc--cccc------CCCCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 00 0000 00112489999998874 235999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHH
Q 000576 872 VLAGRKTTGYVTGNITISGYPKKQ----ETFARISGYCEQNDIHSP--QVTVYESLLYSAWL--RLSPEVDSKTRKMFIE 943 (1412)
Q Consensus 872 ~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~yv~Q~~~~~~--~lTv~E~l~f~a~l--r~~~~~~~~~~~~~v~ 943 (1412)
+|+|...+ ..+|+|.++|.+... ...++.++|++|++.+.+ ..|+++++.+.... ....... .+.++.++
T Consensus 305 ~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 382 (490)
T PRK10938 305 LITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQ 382 (490)
T ss_pred HHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHH
Confidence 99996432 137999999976421 123456899999875543 35777666443211 1111111 22345688
Q ss_pred HHHHHcCCch-hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEE
Q 000576 944 EVMELVELNL-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVC 1021 (1412)
Q Consensus 944 ~~l~~l~l~~-~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~ 1021 (1412)
++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++| .|||+
T Consensus 383 ~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii 457 (490)
T PRK10938 383 QWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457 (490)
T ss_pred HHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9999999986 555543 4799999999999999999999999999999999999999999999998765 47999
Q ss_pred EecCCcHHHHH-hhccEeEEecCcEEEEEc
Q 000576 1022 TIHQPSIDIFE-AFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 1022 ~~Hqp~~~i~~-~fD~v~ll~~gG~~~y~G 1050 (1412)
++|+++ ++.+ .+|++++|++ |++++.-
T Consensus 458 vsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 458 VSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred Eecchh-hhhhhhheeEEEecC-CceEEee
Confidence 999986 4655 5899999986 6776643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=521.87 Aligned_cols=471 Identities=24% Similarity=0.326 Sum_probs=370.1
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCceeEEEECCccCCCcCcc-------ceEEEEcC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRLYGRVTYNGHNMDEFVPQ-------RTAAYISQ 234 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 234 (1412)
+...++++|||.|++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|+++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999975 234579999999987544332 47999999
Q ss_pred CC--CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 235 HD--VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 235 ~d--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
++ .+-|-.|+..-+.-..++... ..+..++.++-++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 96 556666777777655444311 0112234456678999999986
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.... +.++..|||||||||.||.||+.+|++|+-||||++||...+.+|.+.|+++-+. -+..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5443 5778899999999999999999999999999999999999999999999999765 477888899999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchh
Q 000576 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVG 472 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1412)
+|+|+||.+|+++++|+.+++.. .|. .||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~Pq-------------------------HpYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQ-------------------------HPYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCC-------------------------ChHH-----------------
Confidence 99999999999999998777632 111 0000
Q ss_pred hhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCcc
Q 000576 473 QILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSV 552 (1412)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~ 552 (1412)
|.+
T Consensus 255 ---------------------------------------r~L-------------------------------------- 257 (534)
T COG4172 255 ---------------------------------------RKL-------------------------------------- 257 (534)
T ss_pred ---------------------------------------HHH--------------------------------------
Confidence 000
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCC
Q 000576 553 TDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDP 632 (1412)
Q Consensus 553 ~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~ 632 (1412)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHH
Q 000576 633 NAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAI 712 (1412)
Q Consensus 633 ~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al 712 (1412)
+.+
T Consensus 258 -------------------------l~a---------------------------------------------------- 260 (534)
T COG4172 258 -------------------------LAA---------------------------------------------------- 260 (534)
T ss_pred -------------------------Hhc----------------------------------------------------
Confidence 000
Q ss_pred HHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Q 000576 713 MVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSL 792 (1412)
Q Consensus 713 ~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~ 792 (1412)
++.|
T Consensus 261 ------------------eP~g---------------------------------------------------------- 264 (534)
T COG4172 261 ------------------EPSG---------------------------------------------------------- 264 (534)
T ss_pred ------------------CCCC----------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhh
Q 000576 793 ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872 (1412)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~ 872 (1412)
......+..|..++.+|+...++.++.+-.+ ..+...++++||++.++||.+||+|.||||||||-.+
T Consensus 265 ----------~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~a 332 (534)
T COG4172 265 ----------DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLA 332 (534)
T ss_pred ----------CCCCCCCCCCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHH
Confidence 0000001124467888888777765432211 1244679999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEEEEEcCccCCc------ccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 000576 873 LAGRKTTGYVTGNITISGYPKKQ------ETFARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE 944 (1412)
Q Consensus 873 L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~ 944 (1412)
|.+...+ +|+|.++|.++.. ...++.+-.|+||+. +.|.+||.+-+.-+.....+ ..+..++++++.+
T Consensus 333 llrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~ 408 (534)
T COG4172 333 LLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIE 408 (534)
T ss_pred HHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHH
Confidence 9986653 5999999998753 235677889999985 78999999988766554433 5678899999999
Q ss_pred HHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q 000576 945 VMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTI 1023 (1412)
Q Consensus 945 ~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~ 1023 (1412)
+++.+||+... .... ...+|||||||++|||||+.+|++++||||||.||-.-+..|.++||++.+ .|.+-++++
T Consensus 409 aL~EVGLDp~~--r~RY--PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS 484 (534)
T COG4172 409 ALEEVGLDPAT--RNRY--PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS 484 (534)
T ss_pred HHHHcCCChhH--hhcC--CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 99999998632 2222 357999999999999999999999999999999999999999999999975 499999999
Q ss_pred cCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1024 HQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1024 Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
||.. -+-.+||++++|++ |++|..||.
T Consensus 485 HDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 485 HDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred ccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9986 47778999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-59 Score=585.50 Aligned_cols=497 Identities=21% Similarity=0.266 Sum_probs=334.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCH
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 244 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 244 (1412)
++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++.+||
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv 87 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTV 87 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcH
Confidence 456999999999999999999999999999999999999887 799999752 469999999888889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHH-------HHHH-HHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV-------FMKA-AATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 245 ~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
+||+.++.... +.............. .++.+.+. ..+. ......+....++.+++.+||+. .+..
T Consensus 88 ~e~l~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~ 160 (556)
T PRK11819 88 RENVEEGVAEV-----KAALDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK 160 (556)
T ss_pred HHHHHHhhHHH-----HHHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc
Confidence 99999863210 000000000000000 00001000 0000 01111223455778999999963 5554
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++ +|+.++|+..++.+++|+|
T Consensus 161 ~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~-tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 161 V-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PG-TVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred h-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhcCeE
Confidence 4 469999999999999999999999999999999999999999999875 24 6667899999999999999
Q ss_pred EEEeCCeEE-EecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhh
Q 000576 397 ILISDGQIV-YQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475 (1412)
Q Consensus 397 ivL~~G~iv-~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1412)
++|++|+++ +.|+++++.+.-+ .+... ..+ + .+..+. ++
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~~~~------------~~~~~-------~~~---------------~-~~~~~~-----~~ 270 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLEQKA------------KRLAQ-------EEK---------------Q-EAARQK-----AL 270 (556)
T ss_pred EEEeCCEEEEecCCHHHHHHHHH------------HHHHH-------HHH---------------H-HHHHHH-----HH
Confidence 999999986 8898887643100 00000 000 0 000000 00
Q ss_pred hhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccc
Q 000576 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555 (1412)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~ 555 (1412)
. +......+ .... +
T Consensus 271 ~----------------------------~~~~~~~~-------~~~~---~---------------------------- 284 (556)
T PRK11819 271 K----------------------------RELEWVRQ-------SPKA---R---------------------------- 284 (556)
T ss_pred H----------------------------HHHHHHHH-------hhhh---h----------------------------
Confidence 0 00000000 0000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHH
Q 000576 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAG 635 (1412)
Q Consensus 556 ~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~ 635 (1412)
.... ++.
T Consensus 285 ----------------~~~~--------------~~~------------------------------------------- 291 (556)
T PRK11819 285 ----------------QAKS--------------KAR------------------------------------------- 291 (556)
T ss_pred ----------------HHHH--------------HHH-------------------------------------------
Confidence 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHH
Q 000576 636 RFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715 (1412)
Q Consensus 636 ~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~n 715 (1412)
..+ ++.. .
T Consensus 292 ------------------~~~----------------------------------------------------~~~~-~- 299 (556)
T PRK11819 292 ------------------LAR----------------------------------------------------YEEL-L- 299 (556)
T ss_pred ------------------HHH----------------------------------------------------HHHh-h-
Confidence 000 0000 0
Q ss_pred HhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Q 000576 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETI 795 (1412)
Q Consensus 716 ef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 795 (1412)
... .... . .....
T Consensus 300 ---~~~----~~~~------------------------------------------------------~------~~~~~ 312 (556)
T PRK11819 300 ---SEE----YQKR------------------------------------------------------N------ETNEI 312 (556)
T ss_pred ---ccc----cccc------------------------------------------------------C------CCcee
Confidence 000 0000 0 00000
Q ss_pred cccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 000576 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 875 (1412)
. .. ... +.....++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|
T Consensus 313 ~-~~-~~~-----~~~~~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 313 F-IP-PGP-----RLGDKVIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred e-cC-CCC-----CCCCeEEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0 00 000 00122589999998874 2469999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccCCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-
Q 000576 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL- 953 (1412)
Q Consensus 876 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~- 953 (1412)
...+ .+|+|.+++. ..+||++|+. .+++.+||+|++.+....... ... ....+++++.+++.+
T Consensus 373 ~~~p--~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~ 437 (556)
T PRK11819 373 QEQP--DSGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGG 437 (556)
T ss_pred CCCC--CCeEEEECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChh
Confidence 7654 4799998541 1489999986 678899999999876432211 111 122456889999863
Q ss_pred hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh
Q 000576 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1033 (1412)
Q Consensus 954 ~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~ 1033 (1412)
..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++. | |||++||++. .+.+.
T Consensus 438 ~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~ 508 (556)
T PRK11819 438 DQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRI 508 (556)
T ss_pred HhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHh
Confidence 344443 4799999999999999999999999999999999999999999999872 4 8999999986 57788
Q ss_pred hccEeEEecCcEEE-EEcC
Q 000576 1034 FDELFLLKRGGQEI-YVGP 1051 (1412)
Q Consensus 1034 fD~v~ll~~gG~~~-y~G~ 1051 (1412)
||++++|++||++. +.|+
T Consensus 509 ~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 509 ATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCEEEEEECCCeEEEecCC
Confidence 99999998767776 4454
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=579.72 Aligned_cols=497 Identities=20% Similarity=0.253 Sum_probs=332.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCH
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 244 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 244 (1412)
++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++++||
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv 85 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG--------IKVGYLPQEPQLDPTKTV 85 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCCCCCCcH
Confidence 456999999999999999999999999999999999999887 799999862 469999999888889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCCh-------HHHHHH-HHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL-------DVFMKA-AATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 245 ~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
+||+.++.... .....+......... .++.+. ....+. .....++....++.+++.+|++. .|+.
T Consensus 86 ~e~i~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 158 (552)
T TIGR03719 86 RENVEEGVAEI-----KDALDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDAD 158 (552)
T ss_pred HHHHHHhhHHH-----HHHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCc
Confidence 99999864210 000000000000000 000000 001111 11112223345677899999964 4544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ ++ +||.++|+...+..++|++
T Consensus 159 ~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~-tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 159 V-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PG-TVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred h-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhcCeE
Confidence 4 479999999999999999999999999999999999999999998864 24 5666899999999999999
Q ss_pred EEEeCCeEE-EecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhh
Q 000576 397 ILISDGQIV-YQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475 (1412)
Q Consensus 397 ivL~~G~iv-~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1412)
++|++|+++ +.|+++++.+.-+ .+ .+ .+ ...++ +.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~~~~------------~~----------~~-~~---------------~~~~~------~~ 264 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLEQKE------------KR----------LE-QE---------------EKEES------AR 264 (552)
T ss_pred EEEECCEEEEecCCHHHHHHHHH------------HH----------HH-HH---------------HHHHH------HH
Confidence 999999975 8898887654110 00 00 00 00000 00
Q ss_pred hhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccc
Q 000576 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555 (1412)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~ 555 (1412)
.. +. .|......+... .
T Consensus 265 ~~---------------------------~~----~~~~~~~~~~~~--------------------------------~ 281 (552)
T TIGR03719 265 QK---------------------------AL----KRELEWVRSSPK--------------------------------A 281 (552)
T ss_pred HH---------------------------HH----HHHHHHHHhhhh--------------------------------h
Confidence 00 00 000000000000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHH
Q 000576 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAG 635 (1412)
Q Consensus 556 ~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~ 635 (1412)
. . .+.+
T Consensus 282 ----------------~---~-----------~~~~-------------------------------------------- 287 (552)
T TIGR03719 282 ----------------R---Q-----------AKSK-------------------------------------------- 287 (552)
T ss_pred ----------------H---H-----------HHHH--------------------------------------------
Confidence 0 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHH
Q 000576 636 RFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715 (1412)
Q Consensus 636 ~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~n 715 (1412)
. +. . .++.. .
T Consensus 288 ----------------~---~~-~------------------------------------------------~~~~~--~ 297 (552)
T TIGR03719 288 ----------------A---RL-A------------------------------------------------RYEEL--L 297 (552)
T ss_pred ----------------H---HH-H------------------------------------------------HHHhh--h
Confidence 0 00 0 00000 0
Q ss_pred HhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Q 000576 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETI 795 (1412)
Q Consensus 716 ef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 795 (1412)
+ . .... . .. ... .
T Consensus 298 ~-----~--~~~~---------------------------------------------------~---~~---~~~---~ 310 (552)
T TIGR03719 298 S-----Q--EFQK---------------------------------------------------R---NE---TAE---I 310 (552)
T ss_pred h-----h--cccc---------------------------------------------------c---CC---Cce---e
Confidence 0 0 0000 0 00 000 0
Q ss_pred cccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 000576 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 875 (1412)
...... +.....++++|+++.++ ++.+|+|+|+.|++||+++|+||||||||||+++|+|
T Consensus 311 -~~~~~~------~~~~~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 311 -YIPPGP------RLGDKVIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred -ecCCCC------CCCCeEEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 000000 00112589999998873 2469999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccCCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-
Q 000576 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL- 953 (1412)
Q Consensus 876 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~- 953 (1412)
...+ .+|+|.+++. ..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+
T Consensus 371 ~~~p--~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~ 435 (552)
T TIGR03719 371 QEQP--DSGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGS 435 (552)
T ss_pred CCCC--CCeEEEECCc--------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChh
Confidence 7554 4799998541 1489999986 47788999999987642211 1111 123457889999864
Q ss_pred hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh
Q 000576 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1033 (1412)
Q Consensus 954 ~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~ 1033 (1412)
..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||++||++. .+...
T Consensus 436 ~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~ 506 (552)
T TIGR03719 436 DQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRI 506 (552)
T ss_pred HhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHh
Confidence 344443 4799999999999999999999999999999999999999999999872 48999999986 57778
Q ss_pred hccEeEEecCcEEE-EEcC
Q 000576 1034 FDELFLLKRGGQEI-YVGP 1051 (1412)
Q Consensus 1034 fD~v~ll~~gG~~~-y~G~ 1051 (1412)
+|++++|++||+++ +.|+
T Consensus 507 ~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 507 ATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCEEEEEECCCeEEEeCCC
Confidence 99999998767876 4444
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=577.78 Aligned_cols=499 Identities=17% Similarity=0.242 Sum_probs=335.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 242 (1412)
++++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|++..++++
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEF 79 (530)
T ss_pred eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCC
Confidence 34457999999999999999999999999999999999999887 799999973 3689999998888999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCC--CCCChHHH----HHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIK--PDPDLDVF----MKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
||+|++.++..- .+..... .+...... ...+.... .......+.+.+..++.+++.+||++..+
T Consensus 80 tv~e~l~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-- 149 (530)
T PRK15064 80 TVLDTVIMGHTE-----LWEVKQE---RDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH-- 149 (530)
T ss_pred cHHHHHHHhhHH-----HHHHHHH---HHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh--
Confidence 999999876310 0000000 00000000 00000000 00111112223345778999999975332
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
++.+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .+.+||+++|+...+.++||+|
T Consensus 150 --~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~~d~i 222 (530)
T PRK15064 150 --YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-----RNSTMIIISHDRHFLNSVCTHM 222 (530)
T ss_pred --cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhcceE
Confidence 123347999999999999999999999999999999999999999998864 2566777999999999999999
Q ss_pred EEEeCCeE-EEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhhhh
Q 000576 397 ILISDGQI-VYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQIL 475 (1412)
Q Consensus 397 ivL~~G~i-v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1412)
++|++|++ ++.|+++++.+.-+. . ..... +.... .
T Consensus 223 ~~l~~g~i~~~~g~~~~~~~~~~~------------~-------~~~~~-------------------~~~~~------~ 258 (530)
T PRK15064 223 ADLDYGELRVYPGNYDEYMTAATQ------------A-------RERLL-------------------ADNAK------K 258 (530)
T ss_pred EEEeCCEEEEecCCHHHHHHHHHH------------H-------HHHHH-------------------HHHHH------H
Confidence 99999999 589998876541100 0 00000 00000 0
Q ss_pred hhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccccc
Q 000576 476 GDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVTDG 555 (1412)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~~~ 555 (1412)
..+ .+.. . ++. .+ .. ... ...
T Consensus 259 ~~~---------------------------~~~~-~-~~~--~~-------------------------~~--~~~-~~~ 279 (530)
T PRK15064 259 KAQ---------------------------IAEL-Q-SFV--SR-------------------------FS--ANA-SKA 279 (530)
T ss_pred HHH---------------------------HHHH-H-HHH--HH-------------------------hh--ccc-hhh
Confidence 000 0000 0 000 00 00 000 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCCHH
Q 000576 556 VIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAG 635 (1412)
Q Consensus 556 ~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~~~ 635 (1412)
+
T Consensus 280 -----------------------------------~-------------------------------------------- 280 (530)
T PRK15064 280 -----------------------------------K-------------------------------------------- 280 (530)
T ss_pred -----------------------------------H--------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHHHH
Q 000576 636 RFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIMVN 715 (1412)
Q Consensus 636 ~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~~n 715 (1412)
. +....+ ...
T Consensus 281 -------------~-~~~~~~--------------------------------------------------------~~~ 290 (530)
T PRK15064 281 -------------Q-ATSRAK--------------------------------------------------------QID 290 (530)
T ss_pred -------------H-HHHHHH--------------------------------------------------------HHh
Confidence 0 000000 000
Q ss_pred HhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Q 000576 716 EFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLETI 795 (1412)
Q Consensus 716 ef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 795 (1412)
+...... .. . ......
T Consensus 291 ~~~~~~~--~~-----------------------------------------------------------~---~~~~~~ 306 (530)
T PRK15064 291 KIKLEEV--KP-----------------------------------------------------------S---SRQNPF 306 (530)
T ss_pred hcccccc--CC-----------------------------------------------------------c---cccCce
Confidence 0000000 00 0 000000
Q ss_pred cccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcC
Q 000576 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g 875 (1412)
...... . +.....++++|++++|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|
T Consensus 307 ~~~~~~--~----~~~~~~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 307 IRFEQD--K----KLHRNALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred eeCCCC--C----CCCCceEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000000 0 00112589999999874 2358999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccCCcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-
Q 000576 876 RKTTGYVTGNITISGYPKKQETFARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN- 952 (1412)
Q Consensus 876 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~- 952 (1412)
...+ .+|+|.++|. +.+||++|+.. +.+.+||+|++.+.. .. . ..++.++++++.+++.
T Consensus 368 ~~~p--~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~ 429 (530)
T PRK15064 368 ELEP--DSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQ 429 (530)
T ss_pred CCCC--CCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCCh
Confidence 7654 4799999873 45899999864 556799999986421 11 1 1134578899999984
Q ss_pred hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHH
Q 000576 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1032 (1412)
Q Consensus 953 ~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~ 1032 (1412)
+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++ +.|||++||++. .+.+
T Consensus 430 ~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~ 500 (530)
T PRK15064 430 DDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSS 500 (530)
T ss_pred hHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHH
Confidence 4555443 479999999999999999999999999999999999999999999886 459999999986 5778
Q ss_pred hhccEeEEecCcEEE-EEcCC
Q 000576 1033 AFDELFLLKRGGQEI-YVGPL 1052 (1412)
Q Consensus 1033 ~fD~v~ll~~gG~~~-y~G~~ 1052 (1412)
.+|++++|++ |+++ +.|+.
T Consensus 501 ~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 501 LATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred hCCEEEEEEC-CeEEEcCCCH
Confidence 8999999986 6776 77764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=564.59 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=160.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+ ++.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 589999998874 24699999999999999999999999999999999997654 4799998641
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCCCCCCHH
Q 000576 894 KQETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~lSgG 970 (1412)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34566677776531 1 11 112345788999999853 445443 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEE-EE
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI-YV 1049 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~-y~ 1049 (1412)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ . .|||+++||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999986 57788999999985 7876 77
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=521.68 Aligned_cols=459 Identities=22% Similarity=0.370 Sum_probs=359.8
Q ss_pred hhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc----ceEEE
Q 000576 156 LNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAY 231 (1412)
Q Consensus 156 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~y 231 (1412)
+++++++++..++|+||||++++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++..-..++ .-|+.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEE
Confidence 456778889999999999999999999999999999999999999999998 89999999988655553 46899
Q ss_pred EcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 232 v~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
|.|+..++|++||.|||.++...... ... -|. .+.......+|+.+|++.
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~---~g~----------------id~-----------~~m~~~A~~~l~~lg~~~ 137 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRR---FGL----------------IDR-----------KAMRRRARELLARLGLDI 137 (500)
T ss_pred EeechhccCCccHHHHhhcccccccC---CCc----------------cCH-----------HHHHHHHHHHHHHcCCCC
Confidence 99999999999999999887543210 000 010 112234567899999976
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
..++.|+ .||+||||.|.|||||..++++++||||||+|+...+.++++.++++.. +|..||.++|..+|+++
T Consensus 138 ~~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~ 210 (500)
T COG1129 138 DPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFE 210 (500)
T ss_pred Chhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHH
Confidence 6888887 4999999999999999999999999999999999999999999999864 68899999999999999
Q ss_pred hcCeEEEEeCCeEEEecCh-hhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcc
Q 000576 392 LFDDIILISDGQIVYQGPR-EHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFS 470 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1412)
+||+|.||.||+.+..++. .+.- .++..+
T Consensus 211 i~DritVlRDG~~v~~~~~~~~~~--------------------------------------------~~~lv~------ 240 (500)
T COG1129 211 IADRITVLRDGRVVGTRPTAAETS--------------------------------------------EDELVR------ 240 (500)
T ss_pred hcCEEEEEeCCEEeeecccccCCC--------------------------------------------HHHHHH------
Confidence 9999999999999876542 2210 000000
Q ss_pred hhhhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 000576 471 VGQILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRD 550 (1412)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~ 550 (1412)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhcccc
Q 000576 551 SVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGF 630 (1412)
Q Consensus 551 ~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~ 630 (1412)
.|+|
T Consensus 241 ---------------------------------------------------------------------------~MvG- 244 (500)
T COG1129 241 ---------------------------------------------------------------------------LMVG- 244 (500)
T ss_pred ---------------------------------------------------------------------------HhhC-
Confidence 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHH
Q 000576 631 DPNAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQN 710 (1412)
Q Consensus 631 ~~~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~ 710 (1412)
+..
T Consensus 245 --------------------------------r~~--------------------------------------------- 247 (500)
T COG1129 245 --------------------------------REL--------------------------------------------- 247 (500)
T ss_pred --------------------------------cch---------------------------------------------
Confidence 000
Q ss_pred HHHHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 000576 711 AIMVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQ 790 (1412)
Q Consensus 711 al~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~ 790 (1412)
.+ .|
T Consensus 248 ---~~-----~~-------------------------------------------------------------------- 251 (500)
T COG1129 248 ---ED-----LF-------------------------------------------------------------------- 251 (500)
T ss_pred ---hh-----hc--------------------------------------------------------------------
Confidence 00 00
Q ss_pred ccccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHH
Q 000576 791 SLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM 870 (1412)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl 870 (1412)
. . . ... ...+..++++|++.. ..++||||++++||++||.|-=|||+|-|+
T Consensus 252 -----~--~-~-~~~---~~~~~~l~v~~l~~~-----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~ 302 (500)
T COG1129 252 -----P--E-P-PEE---GIGEPVLEVRNLSGG-----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELA 302 (500)
T ss_pred -----c--c-c-ccc---CCCCcEEEEecCCCC-----------------CceeCceeEEeCCcEEEEeccccCCHHHHH
Confidence 0 0 0 000 111235677877632 147899999999999999999999999999
Q ss_pred hhhcCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHH
Q 000576 871 DVLAGRKTTGYVTGNITISGYPKKQE----TFARISGYCEQN---DIHSPQVTVYESLLYSAWLRLSP--EVDSKTRKMF 941 (1412)
Q Consensus 871 ~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~yv~Q~---~~~~~~lTv~E~l~f~a~lr~~~--~~~~~~~~~~ 941 (1412)
++|.|.... .+|+|.+||.+.... ..+.-++||+.| +-+++.++|+||+.++...+... -.+....++.
T Consensus 303 ~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~ 380 (500)
T COG1129 303 RALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERAL 380 (500)
T ss_pred HHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHH
Confidence 999995432 479999999986532 344568999987 44788999999998873323221 2445555667
Q ss_pred HHHHHHHcCCchhh-hcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000576 942 IEEVMELVELNLLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020 (1412)
Q Consensus 942 v~~~l~~l~l~~~~-~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1020 (1412)
+++..+.|++.... +.. +..||||++|||.|||.|..+|+||+|||||.|+|.-+...|.++|++++++|++||
T Consensus 381 ~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail 455 (500)
T COG1129 381 AERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455 (500)
T ss_pred HHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEE
Confidence 88899999886432 222 457999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 1021 ~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
+++-+.. |+..+||||++|.+ |+++-.=+
T Consensus 456 ~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~ 484 (500)
T COG1129 456 MISSELP-ELLGLSDRILVMRE-GRIVGELD 484 (500)
T ss_pred EEeCChH-HHHhhCCEEEEEEC-CEEEEEec
Confidence 9999875 89999999999995 78876433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=555.38 Aligned_cols=211 Identities=21% Similarity=0.258 Sum_probs=172.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 488999998773 1 248999999999999999999999999999999997654 47999885
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..+..+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1479999998888899999999864211 111 124688999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5777899999996 477777775
Q ss_pred CCC---chHHHHhhhcC
Q 000576 1053 GRH---SSHLIKYFEGN 1066 (1412)
Q Consensus 1053 ~~~---~~~~~~yF~~~ 1066 (1412)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 12345566665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=559.38 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=161.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+ .+.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 589999998874 24699999999999999999999999999999999997553 4799998 4321
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCCCCCHHH
Q 000576 894 KQETFARISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~lSgGq 971 (1412)
.+||++|+. .+.+.+||.|++.+..... ... .....+.++++.+++. +..+..+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788999999998653210 011 1123467888888885 3445443 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEE-EEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE-IYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~-~y~G 1050 (1412)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++||++. .+...||++++|...|++ .|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999976 577889999999733554 4555
Q ss_pred C
Q 000576 1051 P 1051 (1412)
Q Consensus 1051 ~ 1051 (1412)
.
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=515.74 Aligned_cols=504 Identities=25% Similarity=0.300 Sum_probs=342.0
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCc
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVH 238 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~ 238 (1412)
++..++.+++|+|+|+.+.+|+.++|||+|||||||||++|+|.+.|+ +|+|...+. .+++|++|+...
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~ 77 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPL 77 (530)
T ss_pred eEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCc
Confidence 445567788999999999999999999999999999999999999987 799988752 379999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHH---H-HHHHHhhhhhhhHHHHHHHHHhCCCcccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV---F-MKAAATEGQEASVVTDYILKILGLDVCAD 314 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~il~~lgL~~~~d 314 (1412)
.+..||.+.+.-+... .++...+...... ..++++... + ......++++.+..++.+|..||++.. +
T Consensus 78 ~~~~tv~~~v~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 78 DPEKTVLDYVIEGFGE-----LRELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred CCCccHHHHHHhhhHH-----HHHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 8899999999876431 2222222222211 112221111 1 122234556677788999999999877 6
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
+.++ .||||||.||+||++|+.+|++|+|||||++||..+...+-+.|++ ..+ ++|+++|+....-+.|+
T Consensus 149 ~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 149 RPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred Cchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhh
Confidence 6665 6999999999999999999999999999999999996666666654 456 66669999999999999
Q ss_pred eEEEEeCCeE-EEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchhh
Q 000576 395 DIILISDGQI-VYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQ 473 (1412)
Q Consensus 395 ~vivL~~G~i-v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1412)
+|+-++.|++ .|.|.++...+.-+. ..-++....+.+++ ......++.+.+...
T Consensus 219 ~I~~ld~g~l~~y~Gny~~~~~~r~~------------~~~~~~~~~~~~~~---------~~~~~~~~i~r~~~~---- 273 (530)
T COG0488 219 HILELDRGKLTPYKGNYSSYLEQKAE------------RLRQEAAAYEKQQK---------ELAKEQEWIRRGKAA---- 273 (530)
T ss_pred heEEecCCceeEecCCHHHHHHHHHH------------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHhc----
Confidence 9999999987 688888776542111 00000000000000 000011122222110
Q ss_pred hhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCccc
Q 000576 474 ILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSVT 553 (1412)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~~ 553 (1412)
.+ . + .+-+ .|.-..-+..
T Consensus 274 -------------~~-----~------~--k~a~---sr~k~l~k~~--------------------------------- 291 (530)
T COG0488 274 -------------AS-----K------A--KKAK---SRIKRLEKLE--------------------------------- 291 (530)
T ss_pred -------------cc-----h------H--HHHH---HHHHHHHHHH---------------------------------
Confidence 00 0 0 0000 0000000000
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCCC
Q 000576 554 DGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPN 633 (1412)
Q Consensus 554 ~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~~ 633 (1412)
. .+..
T Consensus 292 -----------------------------~------~~~~---------------------------------------- 296 (530)
T COG0488 292 -----------------------------A------RLAE---------------------------------------- 296 (530)
T ss_pred -----------------------------h------hhhh----------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHHH
Q 000576 634 AGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAIM 713 (1412)
Q Consensus 634 ~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al~ 713 (1412)
.+
T Consensus 297 ------------------------------------------------------~~------------------------ 298 (530)
T COG0488 297 ------------------------------------------------------ER------------------------ 298 (530)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred HHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Q 000576 714 VNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSLE 793 (1412)
Q Consensus 714 ~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~ 793 (1412)
+.... .+.
T Consensus 299 ------------~~~~~-----------------------------------------------------------~~~- 306 (530)
T COG0488 299 ------------PVEEG-----------------------------------------------------------KPL- 306 (530)
T ss_pred ------------ccccc-----------------------------------------------------------ccc-
Confidence 00000 000
Q ss_pred cccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhh
Q 000576 794 TITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873 (1412)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L 873 (1412)
... ..... .+..+..++++|+++.|+ +.+.+++++||.|.+|+.+||+||||+||||||++|
T Consensus 307 ~~~-f~~~~-----~~~g~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l 368 (530)
T COG0488 307 AFR-FPPPG-----KRLGKLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLL 368 (530)
T ss_pred eee-ccCCc-----ccCCCeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 000 00000 011234689999999885 225799999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEEEEcCccCCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000576 874 AGRKTTGYVTGNITISGYPKKQETFARISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN 952 (1412)
Q Consensus 874 ~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~ 952 (1412)
+|...+ .+|+|.+.-. -.+||..|+. .+.+..|+.|.+.-.. ++.. ...+...+..+++.
T Consensus 369 ~g~~~~--~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~ 429 (530)
T COG0488 369 AGELGP--LSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFT 429 (530)
T ss_pred hhhccc--CCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCC
Confidence 996543 3788887531 2479999986 3347889999885221 1111 34567788888886
Q ss_pred hhh-hcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 000576 953 LLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031 (1412)
Q Consensus 953 ~~~-~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~ 1031 (1412)
.-. .+. ++.||||||.||.+|+.++.+|.+|+|||||++||..+...+.+.|.+. ..|||+++||... +-
T Consensus 430 ~~~~~~~-----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~ 500 (530)
T COG0488 430 GEDQEKP-----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LD 500 (530)
T ss_pred hHHHhCc-----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HH
Confidence 532 222 4579999999999999999999999999999999999999999999876 4699999999874 77
Q ss_pred HhhccEeEEecCcEEEEEcC
Q 000576 1032 EAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 1032 ~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
..+++++++.+ +-..|.|.
T Consensus 501 ~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 501 RVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred hhcceEEEEcC-ceeEcCCC
Confidence 88999999985 44444454
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=538.92 Aligned_cols=200 Identities=19% Similarity=0.275 Sum_probs=157.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+ +++.+|+|+|++|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 589999999873 123589999999999999999999999999999999997654 4799998752
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCCCCCCHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~lSgGqr 972 (1412)
..+||++|+. .+.+++.++.........+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 3445666664322111111 111 234678999999963 34433 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEE-EEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI-YVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~-y~G~ 1051 (1412)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 3 49999999987 47778999999985 7887 7775
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=478.67 Aligned_cols=466 Identities=21% Similarity=0.310 Sum_probs=364.6
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc----ceEEEE
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAYI 232 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv 232 (1412)
..++++++...+++|||+++++||++||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ .-||+|
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMV 84 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMV 84 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEE
Confidence 34567778888999999999999999999999999999999999999998 89999999998765553 468999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
.||..+++++||.|||..+..-... .+. + ..+....++.+.+.+||+..
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~-~~~-------------------~-----------~~~~~~~i~~l~~~yGl~vd 133 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKG-GLI-------------------D-----------RRQARARIKELSERYGLPVD 133 (501)
T ss_pred eeccccccccchhhhhhhcCccccc-ccc-------------------C-----------HHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999988642100 000 0 11233456778999999999
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.|.+|++ ||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++ .|.+||.++|-..|+.+.
T Consensus 134 p~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~i 206 (501)
T COG3845 134 PDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAI 206 (501)
T ss_pred ccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHh
Confidence 9988885 999999999999999999999999999999999999999999999976 478888899999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhcCCCCCccCCHhHHHHHHHhcchh
Q 000576 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVG 472 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1412)
+|++.||..|+++..-++ .. + .+.+++++.
T Consensus 207 aDrvTVLR~Gkvvgt~~~--~~--------------~---------------------------~t~~ela~l------- 236 (501)
T COG3845 207 ADRVTVLRRGKVVGTVDP--VA--------------E---------------------------TTEEELAEL------- 236 (501)
T ss_pred hCeeEEEeCCeEEeeecC--CC--------------C---------------------------CCHHHHHHH-------
Confidence 999999999998643210 00 0 000000000
Q ss_pred hhhhhhhCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcccCCCCCcc
Q 000576 473 QILGDELGIPFDKTKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLFQLTTIALVTMTLFFRTKMHRDSV 552 (1412)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~tlf~~~~~~~~~~ 552 (1412)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhcCCcchhhHHHHhHhhhhhHHHHHHHHHHhhhhhccccCC
Q 000576 553 TDGVIYAGATFFIIIMIMFNGMAEISMTIAKLPIFYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDP 632 (1412)
Q Consensus 553 ~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~lp~~~~~~~i~~~i~Y~~~g~~~ 632 (1412)
|+|
T Consensus 237 --------------------------------------------------------------------------MvG--- 239 (501)
T COG3845 237 --------------------------------------------------------------------------MVG--- 239 (501)
T ss_pred --------------------------------------------------------------------------hcC---
Confidence 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccChhhHHHHHHHHcHHHHHHHHH
Q 000576 633 NAGRFFRQYLLLLFVNQMASALFRLIAATGRNLVVANTFGAFALLLLYALGGFVLNREDIKSWWIWAYWCSPLMYAQNAI 712 (1412)
Q Consensus 633 ~~~~ff~~~l~~~l~~~~~~~l~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ya~~al 712 (1412)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCcccccCCCCCCchhHHHhhccCccccccchhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Q 000576 713 MVNEFLGHSWRKILPNTTEPLGVEVLQSRGFFTDSYWYWLGVGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSL 792 (1412)
Q Consensus 713 ~~nef~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~L~g~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~ 792 (1412)
.++. .+.
T Consensus 240 ----------------------~~v~---------------------------------------------------~~~ 246 (501)
T COG3845 240 ----------------------REVV---------------------------------------------------LRV 246 (501)
T ss_pred ----------------------Cccc---------------------------------------------------ccc
Confidence 0000 000
Q ss_pred ccccccCCccCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhh
Q 000576 793 ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872 (1412)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~ 872 (1412)
. .....|. +..++++|++..-+. ....+++|||.+++||++||.|..|-|.+.|+.+
T Consensus 247 ------~----~~~~~pg-~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~ea 303 (501)
T COG3845 247 ------V----KPPSTPG-EVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303 (501)
T ss_pred ------c----cCCCCCC-CeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHH
Confidence 0 0000011 236889999865431 2357999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEEEEEcCccC----Cccc-ccceEEEeccCCC---CCCCCCHHHHHHHHHHhcC----CCCCCHHHHHH
Q 000576 873 LAGRKTTGYVTGNITISGYPK----KQET-FARISGYCEQNDI---HSPQVTVYESLLYSAWLRL----SPEVDSKTRKM 940 (1412)
Q Consensus 873 L~g~~~~~~~~G~i~i~g~~~----~~~~-~~~~~~yv~Q~~~---~~~~lTv~E~l~f~a~lr~----~~~~~~~~~~~ 940 (1412)
|+|...+ .+|+|.++|.++ +... .+.-++|||.|.. +.+.+|+.||+.+...-+. ..-......++
T Consensus 304 isGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~ 381 (501)
T COG3845 304 ISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK 381 (501)
T ss_pred HhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH
Confidence 9997644 249999999986 2222 2346899999864 5789999999987643221 11234455667
Q ss_pred HHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000576 941 FIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020 (1412)
Q Consensus 941 ~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1020 (1412)
...++++.++....... ...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.++.|+.|+
T Consensus 382 ~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVL 457 (501)
T COG3845 382 FARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457 (501)
T ss_pred HHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEE
Confidence 78889999887632211 12467999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHhhccEeEEecCcEEEEEcCCCC
Q 000576 1021 CTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGR 1054 (1412)
Q Consensus 1021 ~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~ 1054 (1412)
+++-+.+ ++++++|||.+|.+ |+++...++.+
T Consensus 458 LiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 458 LISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred EEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 9999987 79999999999995 89998887743
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=375.96 Aligned_cols=229 Identities=25% Similarity=0.397 Sum_probs=195.5
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc----CccceEEEE
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF----VPQRTAAYI 232 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv 232 (1412)
+++.+++++..+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCee
Confidence 45667788889999999999999999999999999999999999999987 89999999766321 235789999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
+|+..+||++||.||+..+...-. ....++++.....+|+.+||.+.
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~---------------------------------~~~k~eA~~~A~~lL~~VGL~~k 129 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVK---------------------------------KLSKAEAREKALELLEKVGLADK 129 (240)
T ss_pred cccccccccchHHHHHHhhhHHHc---------------------------------CCCHHHHHHHHHHHHHHcCchhh
Confidence 999999999999999998743110 01122344556778999999998
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
+|.+ +..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .|.|.+.++|....+.+.
T Consensus 130 a~~y-----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 130 ADAY-----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred hhhC-----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHh
Confidence 8755 457999999999999999999999999999999999999999999999987 467777799999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHh
Q 000576 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 436 (1412)
+|||+.|++|+++.+|+++++ |..|.+....+|+..
T Consensus 203 adrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 203 ADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred hheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 999999999999999999987 456766666677654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=404.89 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=156.6
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 891 (1412)
|..+.++|+++.|+. +..++++++|-|.+++.+|++||||+||||||+++.|...+ ..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 446889999998862 22589999999999999999999999999999999997654 3576654322
Q ss_pred cCCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 892 PKKQETFARISGYCEQN--DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 892 ~~~~~~~~~~~~yv~Q~--~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. ..++-.|. +.+.-+.++-|++.=. ..++.+.+.+..++..+||....+.. ..+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 12333333 3344456666665421 11133455678889999998544432 1468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||.++||-. -|-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999998765 458999999976 377789999999999999998
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 874
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=363.04 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=189.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.|+++|++++|. ...+|+|||++|++||+++|+|||||||||||++|.+...+ .+|+|.++|.+.
T Consensus 2 mi~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEec
Confidence 378999998884 46799999999999999999999999999999999997654 479999999754
Q ss_pred C----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 K----QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~----~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. -...++.+|+|+|+..++|++||.||+..+...- ...+.++.++...+.|+.+||.+.+|... ..|||
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSG 139 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSG 139 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCc
Confidence 3 2346788999999999999999999999875432 23456666777889999999999988774 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
||||||+|||||+.+|+++++|||||.|||+....+.+.+++++++|.|.||+||+... .-+.+||++.|++ |+++..
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~ 217 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEE 217 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999874 6778999999985 899999
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|++
T Consensus 218 g~p 220 (240)
T COG1126 218 GPP 220 (240)
T ss_pred cCH
Confidence 976
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=363.47 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=193.8
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEc
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYIS 233 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~ 233 (1412)
++++++++++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.+. ++.+|||-
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhh
Confidence 45566777889999999999999999999999999999999999999998 8999999999987654 68999999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|+-.+||++||.|||.+-..+.+.. .++.+.+++++|+.+||+..
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~- 126 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS- 126 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH-
Confidence 9999999999999999877665431 12345568899999999852
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
...+++++.|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+.. ++||+.++|+.+|+++++
T Consensus 127 --~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLa 203 (309)
T COG1125 127 --EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLA 203 (309)
T ss_pred --HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhh
Confidence 23467788999999999999999999999999999999999999999999999986654 677777999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHH
Q 000576 394 DDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
|||.+|++|+++..+++++++.
T Consensus 204 dri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred ceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=374.96 Aligned_cols=223 Identities=26% Similarity=0.371 Sum_probs=195.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 238 (1412)
...+|+|||++|++|++.+|+|.||||||||++++.++-.|+ +|+|.++|.++..... ++.+|+++|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 467999999999999999999999999999999999999998 8999999988876543 4789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
+.+.||.||++|..+..+.. +.+.+.++.++|+.+||++.+|..
T Consensus 95 LssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y-- 138 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY-- 138 (339)
T ss_pred cccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC--
Confidence 99999999999998776531 123456778899999999888754
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|++.|+++.+.. +.||+.++|.++-+-+.||||.+
T Consensus 139 ---P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 139 ---PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred ---chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheE
Confidence 45799999999999999999999999999999999999999999999997754 78888899999999999999999
Q ss_pred EeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000576 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVT 438 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 438 (1412)
|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 999999999999988 44566666666666544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=389.04 Aligned_cols=227 Identities=29% Similarity=0.424 Sum_probs=199.9
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc-ceEEEEcCCC
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHD 236 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d 236 (1412)
++.+.+++..+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|+++++..|+ |.+|+|+|+.
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~y 84 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNY 84 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCc
Confidence 3445555544999999999999999999999999999999999999998 89999999999998775 8899999999
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.++|+|||+|||.|+.+.++.. .++.+.+++++.+.|+|++..|.+
T Consensus 85 ALyPhmtV~~Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~ 130 (338)
T COG3839 85 ALYPHMTVYENIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRK 130 (338)
T ss_pred cccCCCcHHHHhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcC
Confidence 9999999999999998876531 123455678899999999988755
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+++|||||||||++||||+.+|++++||||+|.||+..+.++...++++.+. -++|+|.++|+..|+..++|+|
T Consensus 131 -----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 131 -----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred -----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEE
Confidence 4579999999999999999999999999999999999999999999997554 4677888999999999999999
Q ss_pred EEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000576 397 ILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 435 (1412)
.+|++|+|...|++.++. ..|.+.-+|.|+-
T Consensus 205 ~Vm~~G~i~Q~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 205 VVMNDGRIQQVGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred EEEeCCeeeecCChHHHh--------hCccchhhhhhcC
Confidence 999999999999999984 4677777777754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=388.57 Aligned_cols=224 Identities=31% Similarity=0.443 Sum_probs=195.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 467889998874 135799999999999999999999999999999999997765 589999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 894 KQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. ...+++++++++.++|.+.++.. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567789999999999999999999999999987643 34556799999999999855444 35799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||++||+||+++|++|||||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 68888999999985 8999999
Q ss_pred CCCCCchHHHHhhhc
Q 000576 1051 PLGRHSSHLIKYFEG 1065 (1412)
Q Consensus 1051 ~~~~~~~~~~~yF~~ 1065 (1412)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 76 445555543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=389.77 Aligned_cols=230 Identities=29% Similarity=0.433 Sum_probs=203.3
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc-ceEEEEcCCC
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHD 236 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d 236 (1412)
++++.++...+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+. |.+++|+|+-
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSY 86 (352)
T ss_pred eeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCc
Confidence 3455667788999999999999999999999999999999999999998 89999999999988774 7899999999
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+||+|||+||+.|+.+.++... ..+.+.+++++|+.++|++.++
T Consensus 87 ALFPHltV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-- 131 (352)
T COG3842 87 ALFPHMTVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-- 131 (352)
T ss_pred ccCCCCcHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh--
Confidence 99999999999999987432110 1124457888999999998765
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+.+..|||||||||+|||||+.+|++|+||||.|+||..-+.++...++++.+.. +.|.|.++|+..|++.++|||
T Consensus 132 ---R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI 207 (352)
T COG3842 132 ---RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRI 207 (352)
T ss_pred ---hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccce
Confidence 4455799999999999999999999999999999999999999999999997765 777888999999999999999
Q ss_pred EEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhh
Q 000576 397 ILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 437 (1412)
.+|++|+|...|+++++ |..|...-+|+|+.+.
T Consensus 208 ~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 208 AVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred EEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 99999999999999998 5578888888988754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.30 Aligned_cols=230 Identities=29% Similarity=0.456 Sum_probs=194.7
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCc---cCCCcCc-cceEEEEc
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH---NMDEFVP-QRTAAYIS 233 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~ 233 (1412)
+.++..+...+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||+ +.+.... .|.+|||+
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEE
Confidence 4455667788999999999999999999999999999999999999998 799999999 5555333 38899999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|+..+|++|||.|||+||.+++.. .|+ ..+.+..++++|+.+.|++.+
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la 131 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLA 131 (345)
T ss_pred echhhcccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchh
Confidence 999999999999999999876521 111 113345677889999998765
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
+ +++.+|||||||||++||||+..|++|+||||+++||.+.+..+-++|+++.... +.+.+.++|+..|+++++
T Consensus 132 ~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~la 205 (345)
T COG1118 132 D-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELA 205 (345)
T ss_pred h-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhc
Confidence 5 6677899999999999999999999999999999999999999999999986654 555666999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHh
Q 000576 394 DDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 436 (1412)
|+|++|++|+|...||++|+. ..|...-+..|+-+
T Consensus 206 drvvvl~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 206 DRVVVLNQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred ceEEEecCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999999999984 34655555555544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=352.41 Aligned_cols=232 Identities=26% Similarity=0.387 Sum_probs=200.1
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..+++++|++++. .+.|++|||++|++||+++||||||+||||||+.|.|...+ .+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~fG-------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSFG-------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeecC-------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 3689999998873 46899999999999999999999999999999999998765 47999999998
Q ss_pred CCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCCCC
Q 000576 893 KKQ------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPGVN 965 (1412)
Q Consensus 893 ~~~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~ 965 (1412)
+.+ ...++.+|+++|+-.++..+||+||+.|. +|...+.+++..++.+..-++.+||... .+.. ..
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 23567899999999999999999999885 3444556677777788888999999876 4544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
.||||+|||++|||||+.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 999999999987 68999999999996 8
Q ss_pred EEEEEcCCCC----CchHHHHhhhcCCC
Q 000576 1045 QEIYVGPLGR----HSSHLIKYFEGNPG 1068 (1412)
Q Consensus 1045 ~~~y~G~~~~----~~~~~~~yF~~~~g 1068 (1412)
+++..|++.+ +..-+.+||....+
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 9999999842 22347788877543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=372.47 Aligned_cols=215 Identities=31% Similarity=0.423 Sum_probs=185.2
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc---ceEEEEcCCCC
Q 000576 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDV 237 (1412)
Q Consensus 161 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~ 237 (1412)
..++++++|+|+|+++++|++++|+||||||||||||+|+|.+.|. +|+|.++|+++.+...+ +.+|||||...
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 3445678999999999999999999999999999999999999987 79999999999877653 78999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
..+.+||+|-+.+|..-.. .. .. ...++....++..|+.+|+.+.++..+
T Consensus 87 ~~~~~tV~d~V~~GR~p~~--~~----------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~ 136 (258)
T COG1120 87 APFGLTVYELVLLGRYPHL--GL----------------FG------------RPSKEDEEIVEEALELLGLEHLADRPV 136 (258)
T ss_pred CCCCcEEeehHhhcCCccc--cc----------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCcc
Confidence 8889999999999843210 00 00 001122335788899999999988666
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
. .|||||||||.|||||+++|++|+||||||+||...+.++++.++++++. ++.++|+++|+...+..+||+++
T Consensus 137 ~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 137 D-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred c-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEE
Confidence 5 69999999999999999999999999999999999999999999999864 46777779999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++++|++++++
T Consensus 211 ~lk~G~i~a~G~p~evl 227 (258)
T COG1120 211 LLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEECCeEEeecCcchhc
Confidence 99999999999998875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.95 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=192.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
+++++|++.+... ......+|+|||++|++||++||+|+||||||||++++.+...+ .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 6789999777521 11245799999999999999999999999999999999997654 4899999997654
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 Q------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ...++.+|+++|+..++.+.||+||+.|...+.. .++++.+++|.++++.+||.+.++... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 3467889999999999999999999999887764 567888999999999999998887763 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
|||||||+|||||+.+|+||++|||||.|||++...|.+.|+++.++ |.||+++||+++ -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999998755 999999999986 37778999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99997
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=360.89 Aligned_cols=217 Identities=28% Similarity=0.442 Sum_probs=185.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++|+ ++ .+|+|||+++++|++++|+||||||||||+++|.|...+ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 589999999985 22 599999999999999999999999999999999996654 489999999887
Q ss_pred CcccccceEEEeccCCCC--CCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQETFARISGYCEQNDIH--SPQVTVYESLLYSAWLRLS--PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~--~~~lTv~E~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.+..-+..+|||||...+ ..-+||+|-+..+..-+.. .... ++.++.++++|+.+|+.+.+|..+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654445689999996422 2347999999876332221 1122 3336789999999999999998876 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
||+||+.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 5899999999997 589999
Q ss_pred cCCCC
Q 000576 1050 GPLGR 1054 (1412)
Q Consensus 1050 G~~~~ 1054 (1412)
|++.+
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99853
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=350.35 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=185.5
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEE
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYI 232 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv 232 (1412)
+.++++.+.||+|||++|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++..... ++++|++
T Consensus 14 v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~Gvl 90 (263)
T COG1127 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVL 90 (263)
T ss_pred eeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEE
Confidence 345567888999999999999999999999999999999999999998 7999999999866543 4679999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
+|+-.+|.++||+||+.|..+-... + | ....+..+..-|+.+||+..
T Consensus 91 FQ~gALFssltV~eNVafplre~~~---------l----------p--------------~~~i~~lv~~KL~~VGL~~~ 137 (263)
T COG1127 91 FQQGALFSSLTVFENVAFPLREHTK---------L----------P--------------ESLIRELVLMKLELVGLRGA 137 (263)
T ss_pred eeccccccccchhHhhheehHhhcc---------C----------C--------------HHHHHHHHHHHHHhcCCChh
Confidence 9999999999999999997543210 0 1 11223345556888999854
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
+.+.++..||||+|||++||||++.+|+++|+||||+||||.++..|.+.++++.+.. +.|+++++|+.++++..
T Consensus 138 ----~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i 212 (263)
T COG1127 138 ----AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTI 212 (263)
T ss_pred ----hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhh
Confidence 3456777899999999999999999999999999999999999999999999998765 56666699999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHHH
Q 000576 393 FDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+|++++|.+|+|+.+|+++++.+
T Consensus 213 ~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 213 ADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=379.92 Aligned_cols=219 Identities=32% Similarity=0.481 Sum_probs=190.8
Q ss_pred hhcccccc-cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc--CccceEEEEc
Q 000576 157 NILSSRKK-HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF--VPQRTAAYIS 233 (1412)
Q Consensus 157 ~~~~~~~~-~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~ 233 (1412)
++++++++ .+.+|+||||+|++|++++++||||||||||+|+|+|++.|+ +|+|.++|.+.... ..++.+||++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEc
Confidence 45667777 689999999999999999999999999999999999999997 89999999887652 3357899999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|++.+++.+||+||+.|.+++.+... ......++++++.+||++..
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKA 130 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhh
Confidence 99999999999999999988875421 01223567899999999844
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
++ .+++||+||||||+||.||+++|++|||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+|
T Consensus 131 ~~-----~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 131 NK-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELC 204 (293)
T ss_pred Cc-----chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhC
Confidence 44 44579999999999999999999999999999999999999999999999864 3467777899999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHH
Q 000576 394 DDIILISDGQIVYQGPREHVLEFFE 418 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~~f~ 418 (1412)
|+|++|++|++++.|+.+++...+.
T Consensus 205 d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 205 DRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 9999999999999999999876544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=400.74 Aligned_cols=216 Identities=22% Similarity=0.361 Sum_probs=187.1
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||++.++. +++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46899999988741 235699999999999999999999999999999999997654 47999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 893 KKQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 893 ~~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++.. ..++.++.++++++.++|.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~---~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 23456799999999999999999999998766532 23344567899999999988877664 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|+++. +|+|||++||+++ ++..++||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57778999999995 8999999
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 86
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=356.03 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=173.5
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcC
Q 000576 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239 (1412)
Q Consensus 160 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~ 239 (1412)
++.++...+|+|||++|++||+++|+||||||||||||+|+|+..|+ +|+|.++|.++. .+...++||+|++.++
T Consensus 10 ~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~Ll 84 (248)
T COG1116 10 SKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALL 84 (248)
T ss_pred EEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCccc
Confidence 33445577999999999999999999999999999999999999998 799999999873 3567899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
|-+||+||+.|+.+..+... .+....++..|+.+||....|
T Consensus 85 PW~Tv~~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~----- 125 (248)
T COG1116 85 PWLTVLDNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED----- 125 (248)
T ss_pred chhhHHhhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----
Confidence 99999999999987654211 112235678999999988776
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+++..|||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.||+.++|+.+|+..++|||++|
T Consensus 126 ~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl 204 (248)
T COG1116 126 KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVL 204 (248)
T ss_pred cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEe
Confidence 4556899999999999999999999999999999999999999999999998754 577777999999999999999999
Q ss_pred eCC
Q 000576 400 SDG 402 (1412)
Q Consensus 400 ~~G 402 (1412)
+++
T Consensus 205 ~~~ 207 (248)
T COG1116 205 SNR 207 (248)
T ss_pred cCC
Confidence 984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=363.41 Aligned_cols=218 Identities=29% Similarity=0.420 Sum_probs=188.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 478999999985 45799999999999999999999999999999999997654 479999999986
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE-VDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ..+.+.++|+||.....+.+||+|.+.++..-..... ...++..+.++++++.+++.++++..+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 4577899999999988899999999987743211111 112333457999999999999998765 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||+.|||||+.+|+||+||||||.||...+..|++.++++.+ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999984 6788999999985 89999
Q ss_pred EcCCC
Q 000576 1049 VGPLG 1053 (1412)
Q Consensus 1049 ~G~~~ 1053 (1412)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99984
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=340.49 Aligned_cols=214 Identities=29% Similarity=0.389 Sum_probs=192.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
+++.+++.+|+. ..++++||||.++.||++||+|+|||||||+|++|++...+ .+|.|++||.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccc
Confidence 567888887753 23589999999999999999999999999999999997765 4899999999854
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ...++.+|.++.+.-++..+|++|||.|.+.+.. ....+.+++++++.+.|+|.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 4567889999977888999999999999998863 4556677889999999999999999876 7999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|||+|||||+++|++++|||||||||..+...+.+.++++.+.|++||+++|..+ ++.++||++++|++ |++++.|..
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999988999999999986 78889999999996 899999987
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=346.84 Aligned_cols=220 Identities=26% Similarity=0.341 Sum_probs=187.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+..|+ +++++|+|||+.|++||++||+|+|||||||||++|.|...+ .+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccch
Confidence 588999998884 356899999999999999999999999999999999996554 479999999764
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCchhhhcccCCC
Q 000576 894 KQ------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRL-----SPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962 (1412)
Q Consensus 894 ~~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 962 (1412)
.. ..+++.+||++|+..+.+.+||.+|+..+..-+. --....++.+...-+.++.+|+.+.+-...+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 3457789999999999999999999986532211 1123334455667789999999988776643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
.|||||+|||+|||+|+.+|+||+.|||+++||+.++..||+.|+++.+ .|.|||++.||... ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 6999999999999999999999999999999999999999999999975 59999999999874 678999999998
Q ss_pred cCcEEEEEcCCCC
Q 000576 1042 RGGQEIYVGPLGR 1054 (1412)
Q Consensus 1042 ~gG~~~y~G~~~~ 1054 (1412)
+ |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=352.31 Aligned_cols=209 Identities=27% Similarity=0.433 Sum_probs=176.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++||+..|... .....+|++||+.|++||++||||||||||||||++|.|...+ .+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4578888777532 1225799999999999999999999999999999999997665 4799999997754
Q ss_pred c------ccc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhh-cccCCCCCCC
Q 000576 895 Q------ETF-ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ-ALVGLPGVNG 966 (1412)
Q Consensus 895 ~------~~~-~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~vg~~~~~~ 966 (1412)
. ..+ ++.+|||+|+-.+.|++||.||+.....+.... ...+++.++++++.+||.+..+ .. +..
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 123 457999999999999999999999876554322 2255667899999999986655 43 347
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
|||||||||+|||||+.+|+||+.||||.+||+.++..|++.++++.++ |+|||++||||. +...|||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999865 999999999974 7889999999997 45
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=352.26 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=180.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.+.++++++++. ...+|+|||++|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 478899998885 25799999999999999999999999999999999997765 479999999987
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ....+|||+|++.++|.+||+||+.++...+. ...+++++.+++.++.+||.+..|... ..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 32 34568999999999999999999999877654 345566678999999999999988764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
||+|||||+.+|+||+||||.+.||+.|+..+++.|.++.+ .++||+++|||.+ |...+.|||++|+++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999864 5899999999987 677899999999864
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=393.91 Aligned_cols=226 Identities=23% Similarity=0.447 Sum_probs=191.9
Q ss_pred ceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHH
Q 000576 117 EIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLL 196 (1412)
Q Consensus 117 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 196 (1412)
+..|+|+|+++.+.. +++.+||+|+||+|+|||.+||||||||||||+.
T Consensus 463 ~G~IeF~~VsFaYP~-------------------------------Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPT-------------------------------RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred cceEEEEEeeeecCC-------------------------------CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 457999999997632 3456799999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHH
Q 000576 197 LALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273 (1412)
Q Consensus 197 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~ 273 (1412)
++|..+++|+ +|+|.+||+|+.++++ ++.+|+|.|+|.+| +.||+|||.|+..
T Consensus 512 sLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~-------------------- 567 (716)
T KOG0058|consen 512 SLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD-------------------- 567 (716)
T ss_pred HHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC--------------------
Confidence 9999999998 8999999999988876 48899999998766 5699999999853
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCC
Q 000576 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEIST 353 (1412)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPts 353 (1412)
..+.|+.+.++. ....+|++.+ +++.+||.||+++. .||||||||++|||||+.+|.||||||.||
T Consensus 568 -----~~t~e~i~~AAk-----~ANah~FI~~---~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATS 633 (716)
T KOG0058|consen 568 -----NATDEEIEAAAK-----MANAHEFITN---FPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATS 633 (716)
T ss_pred -----CCCHHHHHHHHH-----HhChHHHHHh---CccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhh
Confidence 223333444432 2234566554 99999999999887 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 000576 354 GLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 354 gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+||+.+...+.+.|.+..+ +.||++|.|... +.+.+|+|+++++|++++.|+++|+++
T Consensus 634 ALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLS-TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 634 ALDAESEYLVQEALDRLMQ---GRTVLVIAHRLS-TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hcchhhHHHHHHHHHHhhc---CCeEEEEehhhh-HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999998754 456666777764 557789999999999999999999975
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=346.37 Aligned_cols=213 Identities=24% Similarity=0.357 Sum_probs=190.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++|+||++.|. .+.+++|+|++|++||++.++|||||||||+|++|.+...+ .+|+|+|||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 68999998874 35799999999999999999999999999999999987664 4899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch--hhhcccCCCCCCCCCH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL--LRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~vg~~~~~~lSg 969 (1412)
. ..++|.+|||-|.-.++|++||.||+.+-..+. ..++++.+++++|+++.++|.+ +.+.. ...|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 5 457889999999999999999999998876654 4567788889999999999975 55554 358999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
||+|||.+||||+++|+||+||||.+.||+-++..+++.++++.++ |+|||++|||.. +.+.+.||+.+|+ +|+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999998765 999999999987 7899999999998 589998
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
++++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8886
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=356.05 Aligned_cols=208 Identities=25% Similarity=0.417 Sum_probs=177.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCC--CcCCCCCH
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHD--VHIGEMTV 244 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 244 (1412)
++|+|||+.+++|++++|+||||||||||+|+|+|++.|. +|+|.++|.+......+.++|||||.. .+-+.+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999987 799999999887766667999999953 34455799
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccccc
Q 000576 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG 324 (1412)
Q Consensus 245 ~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~ 324 (1412)
+|.+..+.--+. ..++ .. ..+.+..++++|+.+|+.+.+|..+| .
T Consensus 95 ~d~V~~g~~~~~--g~~~---~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~ 139 (254)
T COG1121 95 KDVVLLGRYGKK--GWFR---RL-------------------------NKKDKEKVDEALERVGMEDLRDRQIG-----E 139 (254)
T ss_pred HHHHHccCcccc--cccc---cc-------------------------cHHHHHHHHHHHHHcCchhhhCCccc-----c
Confidence 999998732111 0000 00 01123567889999999999998887 4
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeE
Q 000576 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404 (1412)
Q Consensus 325 LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~i 404 (1412)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|.+.|+++.+. +.+|++++|+...+.++||+|+.| ++++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~L-n~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICL-NRHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEE-cCee
Confidence 9999999999999999999999999999999999999999999999764 788888999999999999999999 5678
Q ss_pred EEecChhhHHH
Q 000576 405 VYQGPREHVLE 415 (1412)
Q Consensus 405 v~~G~~~~~~~ 415 (1412)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999998753
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=335.24 Aligned_cols=213 Identities=27% Similarity=0.323 Sum_probs=187.6
Q ss_pred cccccccce-eeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCC
Q 000576 159 LSSRKKHIT-ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQH 235 (1412)
Q Consensus 159 ~~~~~~~~~-iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~ 235 (1412)
++++++.++ +++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..... .++.+|.++.+
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCC
Confidence 344555444 899999999999999999999999999999999999998 899999999875432 35889999987
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
..++..||+||||.|-+++.+.. ..+.+.+++.+.+.|+|.+|.|+
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~r 129 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDR 129 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHH
Confidence 89999999999999988775431 12344567889999999999999
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.+| ++|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .+.+|+..+|.++|+..+||+
T Consensus 130 Rv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 130 RVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhhe
Confidence 998 5999999999999999999999999999999999999999999999743 477888899999999999999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 000576 396 IILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~ 415 (1412)
|++|++|++++.|+.+++.+
T Consensus 203 vivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 203 VIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEEecCcEEEcCCHHHHHH
Confidence 99999999999999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=338.70 Aligned_cols=227 Identities=24% Similarity=0.371 Sum_probs=180.6
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEE
Q 000576 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYI 232 (1412)
Q Consensus 160 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv 232 (1412)
..+++.+.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++.+. ..++++|+|
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMV 93 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMV 93 (253)
T ss_pred eEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheee
Confidence 334567789999999999999999999999999999999998755 4567899999999998653 236899999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHH-HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTEL-ARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
+|.+.-|| +|++||+.|+.+..|... +.+.+. ....+. ...-|++=+.|.
T Consensus 94 FQkPnPFp-~SIydNVayG~r~~g~~~--~~ldeiVe~sLk~-----------------------AaLWdEVKDrL~--- 144 (253)
T COG1117 94 FQKPNPFP-MSIYDNVAYGLRLHGIKD--KELDEIVESSLKK-----------------------AALWDEVKDRLH--- 144 (253)
T ss_pred ccCCCCCC-chHHHHHHHhHHhhccch--HHHHHHHHHHHHH-----------------------hHhHHHhHHHhh---
Confidence 99999888 999999999999887643 111111 111110 011122222111
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
+...+|||||+||++|||||+-+|+|||||||||+|||-++..|-+.+.++.+ .-||+.++|.+.++.+
T Consensus 145 --------~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaR 213 (253)
T COG1117 145 --------KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAAR 213 (253)
T ss_pred --------CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHH
Confidence 22347999999999999999999999999999999999999999999999853 4566669999999999
Q ss_pred hcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000576 392 LFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 434 (1412)
..|+...+..|++++.|+.+++ |..|.++...||+
T Consensus 214 vSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 214 VSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred HhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999999999988 4456666666654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=342.17 Aligned_cols=217 Identities=26% Similarity=0.366 Sum_probs=182.5
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDV 237 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 237 (1412)
+++++|+|||++|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 6778999999999999999999999999999999999999987 8999999988765542 468999999999
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+.+.+||.+|+..+..-+. +.++ .-.++.+. +.+...-..|+.+|+.+.+-++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~---------slfglfsk---------------~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWR---------SLFGLFSK---------------EDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHH---------HHhCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 1111 11122211 12223445789999998887776
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+ +|||||+|||+|||||+.+|++++-|||+++||+.+++++++.|++.+.. .+.|++..+|..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~-~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE-DGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHHhhhe
Confidence 5 69999999999999999999999999999999999999999999999875 45666667888999999999999
Q ss_pred EEeCCeEEEecChhhHHH
Q 000576 398 LISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~~ 415 (1412)
-|++|+|+|+||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=326.06 Aligned_cols=213 Identities=25% Similarity=0.346 Sum_probs=184.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++|+||++.|+. .+.+|+||||.|++||++-|+|||||||||||++|.+...+ ..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 689999988853 35699999999999999999999999999999999996554 4799999999864
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 Q------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ..++|.+|+|+||-.+.++.||+||+.|...... ....+-+++|.++++.+||.+..+.+. ..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 2357899999999999999999999999876654 345566778999999999999887663 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-hccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~-fD~v~ll~~gG~~~ 1047 (1412)
|||+||++||||++.+|++|+.||||-+||+..+..||+++.++...|.||++.||+.+ +.+. --|++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhccCcEEEEeC-CEEE
Confidence 99999999999999999999999999999999999999999999989999999999954 4444 467888885 8988
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
.....
T Consensus 217 ~d~~~ 221 (223)
T COG2884 217 RDESR 221 (223)
T ss_pred ecccc
Confidence 76543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=350.95 Aligned_cols=216 Identities=28% Similarity=0.440 Sum_probs=191.8
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc---
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY--- 891 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~--- 891 (1412)
+.++++++..+ ...+++|||+.|+.||++||+|||||||||||++|+|..++ ..|.|.+||.
T Consensus 3 i~i~~~~~~~~-------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~ 67 (345)
T COG1118 3 IRINNVKKRFG-------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLF 67 (345)
T ss_pred eeehhhhhhcc-------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEecc
Confidence 56677776653 35689999999999999999999999999999999998775 4799999998
Q ss_pred cCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 892 PKKQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 892 ~~~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
+.++ ....|.+|||+|+..+++++||.+|+.|+..++ ....+..+.+.+++++++.+.|+++.+... ..||||
T Consensus 68 D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGG 141 (345)
T COG1118 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGG 141 (345)
T ss_pred chhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChH
Confidence 5544 334578999999999999999999999998777 344556778889999999999999988763 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||||+..|++|+||||.++||+.-+..+.+.|+++.++ |.|+|++|||+. +.++++|||++|++ |++.-.
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqv 219 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQV 219 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-Ceeeee
Confidence 999999999999999999999999999999999999999999876 999999999987 79999999999996 899999
Q ss_pred cCCC
Q 000576 1050 GPLG 1053 (1412)
Q Consensus 1050 G~~~ 1053 (1412)
||+.
T Consensus 220 g~p~ 223 (345)
T COG1118 220 GPPD 223 (345)
T ss_pred CCHH
Confidence 9973
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=330.16 Aligned_cols=218 Identities=23% Similarity=0.309 Sum_probs=188.1
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCC---CCCeEEEEEEEc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK---TTGYVTGNITIS 889 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~ 889 (1412)
..++++||++.|. .+++|+|||+.|++++++|+||||||||||||++|-... ..-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3588999998885 457999999999999999999999999999999998732 223578999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCC
Q 000576 890 GYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPG 963 (1412)
Q Consensus 890 g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~ 963 (1412)
|.++-. ..+|+.+|.|+|.+.-+| +|++||+.|+.++....+ ++.++.|++.++...|++- +|.+-..
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 987643 357889999999999999 999999999987765443 5677889999999988764 4554333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..+|||||+|||||||+|+-+|+||+||||||.|||.+...|-+++.++++ .-|||++||.+. ......|+...+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 347999999999999999999999999999999999999999999999974 689999999986 46778999999986
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++.+|++
T Consensus 224 G~LvE~g~T 232 (253)
T COG1117 224 GELVEFGPT 232 (253)
T ss_pred cEEEEEcCH
Confidence 799999997
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=341.81 Aligned_cols=196 Identities=27% Similarity=0.421 Sum_probs=167.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 238 (1412)
.++|+|||++|++||+++|+|||||||||||++|.|...|+ +|+|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 57999999999999999999999999999999999999997 8999999998876543 2579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++++||+||+.+.....+...+ +.....+.+++.+||.+..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999987765543110 12234567899999986655
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++. .++|+++++|+. ++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEEE
Confidence 1234479999999999999999999999999999999999999999999999764 466777677764 67789999999
Q ss_pred EeCCeE
Q 000576 399 ISDGQI 404 (1412)
Q Consensus 399 L~~G~i 404 (1412)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.49 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=192.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+++|+ +.. +|+|+|++|+.||.++|+|||||||||||++|+|...+ .+|+|.|+|.++
T Consensus 3 ~i~l~~v~K~yg------------~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG------------SFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC------------Cce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 588999998884 112 89999999999999999999999999999999997664 489999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
+. ...+|.+++|+|+..++|++||+||+.|+.+++. .++++.+++|+++.+.|++.+..|... +.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 3456889999999999999999999999987764 345677888999999999999998764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++||+++|. +|++.-.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998754 899999999975 7889999999999 589999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 8
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=365.08 Aligned_cols=215 Identities=27% Similarity=0.411 Sum_probs=187.8
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+++++ .+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEe
Confidence 3689999999884 24699999999999999999999999999999999997654 47999999998
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 893 KKQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 893 ~~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
... ...++.+||++|++.+++.+||+|++.|.+.++. ....+..+.++++++.+++.+..++.+ +.||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2346789999999999999999999998776542 233344556789999999988777665 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999987 68889999999985 8999999
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
++
T Consensus 221 ~~ 222 (306)
T PRK13537 221 AP 222 (306)
T ss_pred CH
Confidence 86
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=372.51 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=180.6
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+++.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|++.+++++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~ 91 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHM 91 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCC
Confidence 3456999999999999999999999999999999999999987 8999999998876544 37899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.|+.+..+.. ..+....++++++.+||++..|..+
T Consensus 92 tv~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~----- 132 (356)
T PRK11650 92 SVRENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDRKP----- 132 (356)
T ss_pred CHHHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhCCh-----
Confidence 9999999986533210 0112234677899999988776554
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|
T Consensus 133 ~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G 211 (356)
T PRK11650 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGG 211 (356)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 479999999999999999999999999999999999999999999998653 3677777999999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
+++..|+++++.
T Consensus 212 ~i~~~g~~~~~~ 223 (356)
T PRK11650 212 VAEQIGTPVEVY 223 (356)
T ss_pred EEEEECCHHHHH
Confidence 999999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=397.31 Aligned_cols=258 Identities=27% Similarity=0.432 Sum_probs=204.4
Q ss_pred hHhhHHHHHHhhcCCCCCHHHHHHHHHHHHhhcCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhh
Q 000576 79 LQERQLLIDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNI 158 (1412)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 158 (1412)
.++.+...+|+..+.+.++|.-..+. ....+....+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 45666667777777766665211110 1112222358999999998642
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCC
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQH 235 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 235 (1412)
.+..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||.++++..+ ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1225899999999999999999999999999999999999997 7999999999987765 5889999996
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
+ ++++.||+||+.++. |+.+.++.++|+...+ ..|.+. .++..+||
T Consensus 556 ~-~Lf~gSI~eNi~l~~-------------------------p~~~~e~i~~A~~~ag-----~~~fI~---~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGN-------------------------PEATDEEIIEAAQLAG-----AHEFIE---NLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCC-------------------------CCCCHHHHHHHHHHhC-----cHHHHH---hccccccc
Confidence 5 566789999999863 3344445555554333 234444 48999999
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.+ +.|+|.++|.. .+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl-~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRL-STIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccc-hHhhhccE
Confidence 9998766 7999999999999999999999999999999999999999999999753 45555466654 57788999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 000576 396 IILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~ 415 (1412)
|+||++|+|+.+|+++|+++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999976
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=371.20 Aligned_cols=209 Identities=23% Similarity=0.362 Sum_probs=181.5
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCce--eEEEECCccCCCcCc-cceEEEEcCCCCcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY--GRVTYNGHNMDEFVP-QRTAAYISQHDVHIG 240 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~ 240 (1412)
+++.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..+++
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p 92 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCC
Confidence 3456999999999999999999999999999999999999987 7 999999998865443 467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
++||+||+.|+.+..+... .+....++++++.+||++..|+.+
T Consensus 93 ~~tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~--- 135 (362)
T TIGR03258 93 HLKVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP--- 135 (362)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh---
Confidence 9999999999865432100 012234677899999998777655
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|+
T Consensus 136 --~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~ 213 (362)
T TIGR03258 136 --AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK 213 (362)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999998764336777889999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|+++..|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 214 DGRLAAHGEPQALY 227 (362)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=369.61 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=180.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~ 93 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHM 93 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 3456899999999999999999999999999999999999987 8999999998876544 37899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.|+.+.++... .+....++++++.+||.+..|.. +
T Consensus 94 tv~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~ 134 (351)
T PRK11432 94 SLGENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----V 134 (351)
T ss_pred CHHHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 99999999865432110 11223567789999998776544 4
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|
T Consensus 135 ~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 3567777999999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
+++..|+++++.
T Consensus 214 ~i~~~g~~~~~~ 225 (351)
T PRK11432 214 KIMQIGSPQELY 225 (351)
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=370.45 Aligned_cols=209 Identities=26% Similarity=0.410 Sum_probs=181.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+.+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+++++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~ 91 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNL 91 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 3456999999999999999999999999999999999999987 8999999998866544 47799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.|+.+.++.. ..+....++++++.+||++..|..+
T Consensus 92 tv~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~~~----- 132 (353)
T TIGR03265 92 TVADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERKYP----- 132 (353)
T ss_pred cHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhCCh-----
Confidence 9999999986533210 0112234678999999998776554
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|
T Consensus 133 ~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 133 GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999998654 3567777999999999999999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++..|+++++.+
T Consensus 212 ~i~~~g~~~~~~~ 224 (353)
T TIGR03265 212 VIEQVGTPQEIYR 224 (353)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=362.40 Aligned_cols=217 Identities=26% Similarity=0.387 Sum_probs=193.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+++|+ ...+|+|||++|++||.++|+|||||||||||++|+|...+ .+|+|.++|.+
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 3689999998884 35799999999999999999999999999999999998765 47999999999
Q ss_pred CCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 893 KKQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 893 ~~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
+... ..+|.+|+|+|+-.+||+|||+||+.|+.+++ ....+++.+++|+++++.++|.+..+... ..|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHH
Confidence 7653 45788999999999999999999999997643 33445667789999999999999888764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||+|||||+.+|++|+||||.|.||..-+..++..++++.++ |.|.|++|||.. +.+.+.|||.+|++ |++.-.|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999998754 999999999986 78899999999985 8999999
Q ss_pred CCC
Q 000576 1051 PLG 1053 (1412)
Q Consensus 1051 ~~~ 1053 (1412)
++.
T Consensus 220 tP~ 222 (352)
T COG3842 220 TPE 222 (352)
T ss_pred CHH
Confidence 873
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=362.45 Aligned_cols=208 Identities=28% Similarity=0.416 Sum_probs=179.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 241 (1412)
+++.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 3456999999999999999999999999999999999999987 799999999875432 24679999999988999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.|.++..+... .+....++.+++.+||.+..++.++
T Consensus 95 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 137 (306)
T PRK13537 95 FTVRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG--- 137 (306)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh---
Confidence 999999998655432110 0112235678899999988887765
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
+|||||||||+||+||+++|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|..+++.++||+|++|++
T Consensus 138 --~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~ 213 (306)
T PRK13537 138 --ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEE 213 (306)
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999854 367788899999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+++++.+
T Consensus 214 G~i~~~g~~~~l~~ 227 (306)
T PRK13537 214 GRKIAEGAPHALIE 227 (306)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=363.76 Aligned_cols=206 Identities=24% Similarity=0.360 Sum_probs=178.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCCcC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDVHI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 239 (1412)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999987 7999999998876432 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.|+.+..+... .+....+.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754332100 012234567899999988776554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+.. +.+|+.++|+.+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4799999999999999999999999999999999999999999999987643 567777999999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=368.09 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=185.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 243 (1412)
++++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++|
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 346899999999999999999999999999999999999987 7999999998866544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.|+.+.++... .+....++++++.+||++..|..+ .
T Consensus 103 v~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~ 143 (375)
T PRK09452 103 VFENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----H 143 (375)
T ss_pred HHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----h
Confidence 9999999865332100 011234577899999988776554 4
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 144 ~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999987643 6677779999999999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000576 404 IVYQGPREHVLEFFEFMGFKCPERKGVADFL 434 (1412)
Q Consensus 404 iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 434 (1412)
++..|+++++.+ .|....+++|+
T Consensus 223 i~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 223 IEQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEEcCHHHHHh--------CcccHHHHHhc
Confidence 999999998743 45544445544
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=364.37 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=182.2
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQ 234 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 234 (1412)
+++.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 345677999999999999999999999999999999999999997 8999999999876543 467999999
Q ss_pred CCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccc
Q 000576 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCAD 314 (1412)
Q Consensus 235 ~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 314 (1412)
++.+++++||+||+.|+.+..+... .+....++++++.+||++..+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~ 124 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEH 124 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhh
Confidence 9999999999999999865433210 011234567899999987766
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
+.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.++++.+. .++||+.++|+..++.+++|
T Consensus 125 ~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 125 RYPD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred CChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCC
Confidence 5544 69999999999999999999999999999999999999999999998653 35677779999999999999
Q ss_pred eEEEEeCCeEEEecChhhHHH
Q 000576 395 DIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 395 ~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+|++|++|+++..|+++++..
T Consensus 199 rI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 199 RIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=344.12 Aligned_cols=207 Identities=26% Similarity=0.393 Sum_probs=181.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCC----CcCccceEEEEcCCC-CcCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMD----EFVPQRTAAYISQHD-VHIG 240 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 240 (1412)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 799999999865 223468899999994 6678
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.-||.|.++|+.+..+... ++...+++.+++.+||.+.+|.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 8899999999987765421 1234567889999999988764
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.++|.++|+.+.+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999999975 346777779999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000576 401 DGQIVYQGPREHVLE 415 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~~ 415 (1412)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=361.50 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=186.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++|+.+ ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6899999888421 1124699999999999999999999999999999999997664 4799999998864
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ..++.+||++|+..+++..||+||+.|...... .+..+.++++.++++.++|.+..|... ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998765432 334455667899999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
|||||||+|||||+.+|++|+||||||+||+.+...+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 999999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99986
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=347.06 Aligned_cols=214 Identities=24% Similarity=0.353 Sum_probs=180.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36788988874 24599999999999999999999999999999999997654 4799999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 Q------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ..+++.++|++|++.+++.+||+|++.+...... ....++.++.++++++.+++.+..+..+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 2345679999999999999999999988643221 1233444566888999999987666543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 57788999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=359.73 Aligned_cols=215 Identities=27% Similarity=0.387 Sum_probs=186.9
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+++++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 4689999999884 24699999999999999999999999999999999997654 47999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 893 KKQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 893 ~~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
... ...++.+||++|+..+++.+||+|++.+.+.+.. ....+..+.++++++.++|.+..+..+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999987665442 223334456788999999988777665 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++||++|+++|++|+|||||+|||+.++..+.+.|+++.+.|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999987 68889999999985 8999999
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
++
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=358.69 Aligned_cols=229 Identities=24% Similarity=0.379 Sum_probs=190.6
Q ss_pred cCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCC
Q 000576 111 VGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPAS 190 (1412)
Q Consensus 111 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 190 (1412)
..+..+.-.|+|+|+++++. ++++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 35566677899999999763 234599999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHH
Q 000576 191 GKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTEL 267 (1412)
Q Consensus 191 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~ 267 (1412)
||||+|++|.++++ . +|+|.+||.++.+... ++.+|||||+ .++++.||.+||.+|..- ..++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-~~LFndTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQD-SVLFNDTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCc-ccccchhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 3 7999999999987655 5789999995 666678999999998532 233444444
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeE
Q 000576 268 ARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347 (1412)
Q Consensus 268 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vll 347 (1412)
|++. ...|.+. .++++++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a--------------------------~~hd~i~---~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRA--------------------------GLHDVIS---RLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHc--------------------------CcHHHHH---hccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 4432 1233333 3899999999998874 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 000576 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 348 LDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+|||||+||+.|..+|++.+.+. .+++|+|.+.|+.. ..+-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l~-ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRLD-LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecch-hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999983 35667777888764 567789999999999999999999875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=314.16 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=178.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDV 237 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 237 (1412)
....+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|++|+|+|+..
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecc
Confidence 3456999999999999999999999999999999999999998 7999999999875532 588999999999
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
++++.||.||++|+.+..|... .+.+.++.++|+.+||.+.++..
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l- 134 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL- 134 (223)
T ss_pred ccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC-
Confidence 9999999999999987765321 23445677899999999887644
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..|||||||||+||||++.+|++|+-||||-.||+.++.+|++.+.++.+ .||||++.+|+..-+..+--+++
T Consensus 135 ----P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl 208 (223)
T COG2884 135 ----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVL 208 (223)
T ss_pred ----ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEE
Confidence 447999999999999999999999999999999999999999999999854 58888889999999988888999
Q ss_pred EEeCCeEEEecC
Q 000576 398 LISDGQIVYQGP 409 (1412)
Q Consensus 398 vL~~G~iv~~G~ 409 (1412)
.|++|+++....
T Consensus 209 ~l~~Grl~~d~~ 220 (223)
T COG2884 209 ALEDGRLVRDES 220 (223)
T ss_pred EEeCCEEEeccc
Confidence 999999987643
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=326.17 Aligned_cols=214 Identities=24% Similarity=0.396 Sum_probs=177.4
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc----ceEEEEc
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAYIS 233 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 233 (1412)
++...+++.++|+|||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+. +-++|||
T Consensus 8 ~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 8 NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred eEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 4455677889999999999999999999999999999999999999986 79999999999887664 5689999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhC-CCcc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILG-LDVC 312 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~ 312 (1412)
|....|++|||+|||..++...... +.. .. ..|.+.+.|= |.+.
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~-~~~----------------~~------------------~~e~v~~lFP~Lker 129 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDK-EAQ----------------ER------------------DLEEVYELFPRLKER 129 (237)
T ss_pred ccccchhhCcHHHHHhhhhhccccc-ccc----------------cc------------------cHHHHHHHChhHHHH
Confidence 9999999999999999886433210 000 00 0122222221 3333
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.+..-| .|||||||.++|||||+++|++|+|||||.||-|.-..+|.+.++++.+. .+.+|+.+-|+...+.++
T Consensus 130 ~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~i 203 (237)
T COG0410 130 RNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEI 203 (237)
T ss_pred hcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHh
Confidence 344434 69999999999999999999999999999999999999999999999753 457888899999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHHH
Q 000576 393 FDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+||.++|.+|+|++.|+.+++.+
T Consensus 204 aDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 204 ADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred hCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999853
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=363.26 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=179.6
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+++++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~ 89 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM 89 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCC
Confidence 3456999999999999999999999999999999999999987 7999999998865433 36799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.|+.+......+ .+ ..+....++.+++.+||++..|..+
T Consensus 90 tv~eni~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~~l~~~~L~~~~~~~~----- 134 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRER-------------------PN-----------AAAIKAKVTQLLEMVQLAHLADRYP----- 134 (353)
T ss_pred cHHHHHHhhhhhcccccC-------------------CC-----------HHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence 999999997643210000 00 0112234677899999987766554
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.+++.++|+..++..++|+|++|++|
T Consensus 135 ~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 3667777999999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
++++.|+++++.
T Consensus 214 ~i~~~g~~~~i~ 225 (353)
T PRK10851 214 NIEQAGTPDQVW 225 (353)
T ss_pred EEEEEcCHHHHH
Confidence 999999999884
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=332.29 Aligned_cols=229 Identities=27% Similarity=0.372 Sum_probs=194.6
Q ss_pred hhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc----ceEEE
Q 000576 156 LNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAY 231 (1412)
Q Consensus 156 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~y 231 (1412)
.+.++++++...+++|||+++++||+++|+||||||||||+|+|+|.+.|+ +|+|.++|++++...+. .-++-
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhcccee
Confidence 345678899999999999999999999999999999999999999999998 79999999999887764 35778
Q ss_pred EcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 232 v~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
-+|+..+|++|||.||+..++..+.. +.......+. ..+..+.......+|+.+||.+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~-------------------~~~e~~~~e~A~~~Le~vgL~~ 141 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRA-------------------RKEEREARERARELLEFVGLGE 141 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhh---hhhhhccccc-------------------hhhHHHHHHHHHHHHHHcCCch
Confidence 89999999999999999998764421 0000000000 0011233445678999999999
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
.+|+..| +||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ ..+.+|+.+-|++.-+++
T Consensus 142 ~a~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~ 215 (250)
T COG0411 142 LADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMG 215 (250)
T ss_pred hhcchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhh
Confidence 9998887 4999999999999999999999999999999999999999999999865 356888889999999999
Q ss_pred hcCeEEEEeCCeEEEecChhhHHH
Q 000576 392 LFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
+||||+||+.|+++.+|+++++.+
T Consensus 216 l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 216 LADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=362.48 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=187.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478999998872 124699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
... ..++.+|||+|+..++|++||+||+.|....+ ..+..+.++.++++++.++|.+..+..+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999986543 2344555677899999999998877654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999985 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 219 ~ 219 (356)
T PRK11650 219 P 219 (356)
T ss_pred H
Confidence 6
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=361.78 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=188.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 488999998874 24589999999999999999999999999999999997654 479999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
.. ...+|.+|||+|+..++|++||+||+.|....+ ..+..+.++.++++++.++|.+..+... ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999986543 2334556678999999999998877653 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999995 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 7
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=345.55 Aligned_cols=210 Identities=29% Similarity=0.379 Sum_probs=175.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHD 236 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d 236 (1412)
++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 34456999999999999999999999999999999999999987 799999998875432 235799999998
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+++.+||+||+.++.+...... ..+....++.+++.+||++..++.
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~ 133 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLS---------------------------------EEEIREIVLEKLEAVGLRGAEDLY 133 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCC---------------------------------HHHHHHHHHHHHHHcCCchhhcCC
Confidence 88899999999998643210000 001122356688999998766655
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|+|
T Consensus 134 ~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 134 P-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEE
Confidence 5 469999999999999999999999999999999999999999999998653 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 208 ~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 208 AVLYDGKIVAEGTPEELR 225 (235)
T ss_pred EEEECCeEEEecCHHHHc
Confidence 999999999999987763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=311.21 Aligned_cols=201 Identities=24% Similarity=0.396 Sum_probs=174.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCCHHHHHH
Q 000576 171 GVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 249 (1412)
Q Consensus 171 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~e~l~ 249 (1412)
..++.|++||++||+||||||||||||+|+|+..|. +|+|.+||.+.+...| +|-+++++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467899999999999999999999999999999997 8999999999877655 478999999999999999999999
Q ss_pred HhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhh
Q 000576 250 FSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329 (1412)
Q Consensus 250 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGq 329 (1412)
++..- +-+ +. .+..+.++.++..+||..+.+...+ .|||||
T Consensus 94 LGl~P---~Lk------L~-------------------------a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LN-------------------------AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCCc---ccc------cC-------------------------HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 87431 111 00 1123456778999999988876655 699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecC
Q 000576 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409 (1412)
Q Consensus 330 kqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~ 409 (1412)
||||++||+|+.+.+||+||||+|+||+.-+.+....+.+++.+ ++.|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E-~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999999875 46667778999999999999999999999999999
Q ss_pred hhhHH
Q 000576 410 REHVL 414 (1412)
Q Consensus 410 ~~~~~ 414 (1412)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=319.84 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=190.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.+..+|+.++|. ++++++|||+.+++||++|++|||||||||.+.++.|...+ .+|+|.+||.++
T Consensus 4 ~L~a~~l~K~y~-------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSYK-------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhhC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCccc
Confidence 577888887773 46799999999999999999999999999999999997665 479999999988
Q ss_pred Ccccc----cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQETF----ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~~~~----~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
+.... +.-+||.||+...|..+||+||+.-....+.. +....+++...+++++.+++.++++... ..|||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSG 142 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSG 142 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----ccccc
Confidence 75332 23589999999999999999999877666542 2233566677899999999999998763 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||+.|||||+.+|+.++||||.+|+||-+...|+++++.+.+.|.-|++|-|.-. +....|||.+++.+ |+++..
T Consensus 143 GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~ 220 (243)
T COG1137 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAE 220 (243)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEec
Confidence 9999999999999999999999999999999999999999999999999999999987 78999999999996 899999
Q ss_pred cCCC
Q 000576 1050 GPLG 1053 (1412)
Q Consensus 1050 G~~~ 1053 (1412)
|.+.
T Consensus 221 G~p~ 224 (243)
T COG1137 221 GSPE 224 (243)
T ss_pred CCHH
Confidence 9873
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=359.75 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=181.2
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 891 (1412)
...++|+||++.|+..+ +..+|+|+||+|+|||.+||+||||+||||+.++|-....+ .+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 34799999999998542 45799999999999999999999999999999999986654 5899999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 892 PKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKT-----RKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 892 ~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
|+++ ..+++.+|+|.|+|.++. -||+||+.|+.. +.++++ +.+.+.+.+. ++.+-.|+.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 9765 457789999999999986 499999998753 233322 2222333344 34445788999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
. .||||||||++|||||++||+||+|||+||.||+++...|+++|.++.+ ++|||+++|+.| ..+.+|+|+++++
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~- 677 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK- 677 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-
Confidence 5 6999999999999999999999999999999999999999999998875 699999999986 5788999999986
Q ss_pred cEEEEEcC
Q 000576 1044 GQEIYVGP 1051 (1412)
Q Consensus 1044 G~~~y~G~ 1051 (1412)
|+++..|.
T Consensus 678 G~V~E~G~ 685 (716)
T KOG0058|consen 678 GRVVEMGT 685 (716)
T ss_pred CeEEeccc
Confidence 89999995
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=359.53 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=188.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 589999998874 24589999999999999999999999999999999997664 479999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
... ..+|.+|||+|+..++|++||+||+.|....+. ....+.+++++++++.+++.+..+... ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 234679999999999999999999999865432 344556678999999999988776653 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999995 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 7
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=328.34 Aligned_cols=205 Identities=28% Similarity=0.341 Sum_probs=176.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC----ccceEEEEcCCC--CcCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV----PQRTAAYISQHD--VHIG 240 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 240 (1412)
++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|+++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999997 799999998775542 346789999986 6678
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
..||++.|.-+.+..+.. +.+..+.++|+.+||+.. +-++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~----~l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPS----FLDR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHH----HHhc
Confidence 899999998665443221 111225678999999854 3356
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.+..||||||||++|||||..+|++|++|||||+||+..+.+|++.|.++.+. .+.+.+.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeee
Confidence 67789999999999999999999999999999999999999999999998764 56788889999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000576 401 DGQIVYQGPREHVLE 415 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~~ 415 (1412)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=363.66 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=179.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 243 (1412)
+..+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.+|||+|+..+++++|
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT 107 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCC
Confidence 346999999999999999999999999999999999999987 7999999998865443 478999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.|+.+..+.. ..+....++++++.+||.+..|.. +.
T Consensus 108 v~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~~~~~-----~~ 148 (377)
T PRK11607 108 VEQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEFAKRK-----PH 148 (377)
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 999999986533210 001223467789999998766654 45
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|+
T Consensus 149 ~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999886644 5677779999999999999999999999
Q ss_pred EEEecChhhHH
Q 000576 404 IVYQGPREHVL 414 (1412)
Q Consensus 404 iv~~G~~~~~~ 414 (1412)
++..|+++++.
T Consensus 228 i~~~g~~~~~~ 238 (377)
T PRK11607 228 FVQIGEPEEIY 238 (377)
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=352.94 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=152.3
Q ss_pred CCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcC
Q 000576 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG 890 (1412)
Q Consensus 811 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 890 (1412)
.|..+.+.+|++.|+.. .-+++.+++..+..-...+++|+||+||||+++++.|...+ ..|.+.+++
T Consensus 359 ~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 45578999999887521 12588899999999999999999999999999999985543 357666654
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 891 YPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 891 ~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
+..++|-.|...-+-.+.|.+ +.+-...+. ...+ +.+++-+..+||..-. .-. .+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~p--G~~~----ee~r~hl~~~Gl~g~l---a~~-si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFP--GKTE----EEIRRHLGSFGLSGEL---ALQ-SIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhCC--CCCH----HHHHHHHHhcCCCchh---hhc-cccccCCc
Confidence 456789888765544555543 333333321 2222 2356677788886422 111 25689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||+++|+-+ -+-..|+++.+.++|.-.-..|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999875 457999999976 3777899999998643333444
Q ss_pred C
Q 000576 1051 P 1051 (1412)
Q Consensus 1051 ~ 1051 (1412)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 3
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=360.24 Aligned_cols=214 Identities=23% Similarity=0.330 Sum_probs=187.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEE--EEEEEcCc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT--GNITISGY 891 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 891 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 588999999884 23599999999999999999999999999999999997654 36 99999998
Q ss_pred cCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 892 PKKQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 892 ~~~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
+... ...++.+|||+|+..++|.+||+||+.|....+ .....+.+++++++++.++|.+..+..+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2344555667899999999998877664 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999875 799999999987 68889999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|++
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=363.79 Aligned_cols=208 Identities=25% Similarity=0.415 Sum_probs=178.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..+++++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~ 90 (369)
T PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHL 90 (369)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCC
Confidence 3456999999999999999999999999999999999999987 7999999998865433 36799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.|+.+..+... .+....++.+++.+||++..|+.+
T Consensus 91 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~----- 131 (369)
T PRK11000 91 SVAENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP----- 131 (369)
T ss_pred CHHHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----
Confidence 99999999764322100 011234567899999987776555
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|
T Consensus 132 ~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tvI~vTHd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999998653 3567777999999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
+++..|+++++.
T Consensus 211 ~i~~~g~~~~i~ 222 (369)
T PRK11000 211 RVAQVGKPLELY 222 (369)
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=337.41 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=177.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 35788888774 24699999999999999999999999999999999997654 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++.+|++|++.+...... ......++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 32 234578999999988899999999987654321 223344456788999999987766553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999876 4899999999986 57788999999986 7887765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=355.33 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=178.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 241 (1412)
+++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4567999999999999999999999999999999999999987 799999998875421 23579999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.+.++..+... .+....++.+++.+||++..++.++
T Consensus 81 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 123 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG--- 123 (302)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh---
Confidence 999999998765432100 0112235678999999887776654
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|++|++
T Consensus 124 --~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 124 --TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 367777799999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+++++.+
T Consensus 200 G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 200 GRIIAEGTPEELKR 213 (302)
T ss_pred CEEEEECCHHHHHH
Confidence 99999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=357.94 Aligned_cols=211 Identities=27% Similarity=0.392 Sum_probs=180.0
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCc
Q 000576 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVH 238 (1412)
Q Consensus 161 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 238 (1412)
++++++.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+
T Consensus 49 k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~ 125 (340)
T PRK13536 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNL 125 (340)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccC
Confidence 3344567999999999999999999999999999999999999987 799999999875432 24679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.|.....+... .+.....+.+++.+||++..++.++
T Consensus 126 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~ 171 (340)
T PRK13536 126 DLEFTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS 171 (340)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh
Confidence 899999999987554332100 0111234567889999988877765
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+|||||||||+||+||+++|++|+|||||+|||+.++.++.+.|+++.. .+++|+.++|+.+++.++||+|++
T Consensus 172 -----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 172 -----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999864 367777799999999999999999
Q ss_pred EeCCeEEEecChhhHHH
Q 000576 399 ISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~~ 415 (1412)
|++|+++++|+++++.+
T Consensus 245 l~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 245 LEAGRKIAEGRPHALID 261 (340)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=318.97 Aligned_cols=216 Identities=21% Similarity=0.359 Sum_probs=187.3
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc----ceEEEEc
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAYIS 233 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 233 (1412)
++.++++++++++|||+.+++||+++++|||||||||...++.|+..|+ +|+|.++|.+++..... .-+||+|
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccccc
Confidence 4567788899999999999999999999999999999999999999998 89999999999887653 3589999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|++..|-.+||+|||.-..+.+.... ...+.+...+.+|+.|+|.|++
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr 133 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLR 133 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHh
Confidence 99999999999999987665432100 0012233467899999999988
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
|..-. .||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.+ ++.-|+..-|+..|+...+
T Consensus 134 ~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~ 206 (243)
T COG1137 134 DSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDIC 206 (243)
T ss_pred cCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhh
Confidence 86533 6999999999999999999999999999999999999999999999865 4666666789999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHH
Q 000576 394 DDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
||.+++++|++..+|+++++.+
T Consensus 207 dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 207 DRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred heEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=337.74 Aligned_cols=208 Identities=24% Similarity=0.334 Sum_probs=175.3
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 678999988741 123599999999999999999999999999999999997654 4799999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. .+++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999988754332 223334556889999999987766553 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777999999999986 57778999999986 55
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=357.68 Aligned_cols=217 Identities=25% Similarity=0.387 Sum_probs=186.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899998874 24699999999999999999999999999999999997654 479999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 894 KQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
... ..++.+|||+|+..++|.+||+||+.|....+.. ...+.++.++.++++++.++|.+..+..+ ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 432 2346799999999999999999999987654211 12334455667899999999988777654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+++|++++|++ |++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999987 68899999999985 8999999
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
++
T Consensus 220 ~~ 221 (353)
T PRK10851 220 TP 221 (353)
T ss_pred CH
Confidence 86
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=334.33 Aligned_cols=210 Identities=26% Similarity=0.441 Sum_probs=178.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 35788888773 24599999999999999999999999999999999997554 4799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
. ..++.++|++|+..+++.+|++|++.+....+. ....+.++.++++++.+++.+..+..+ ..||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 345678999999999999999999988654432 223334556888999999987666543 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998877899999999986 57788999999985 7887754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=351.85 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=183.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999998874 24699999999999999999999999999999999997654 479999999875
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 894 KQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
.. ...++.+||++|++.+++.+||+|++.+.+.... ....+.++.++++++.+++.+..+..+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 42 2245679999999999999999999987554331 223333456788999999987776654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 67789999999985 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=335.37 Aligned_cols=216 Identities=26% Similarity=0.369 Sum_probs=180.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 3578888877411 0114699999999999999999999999999999999997654 4799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
. .++.++|++|++.+++.+|++|++.+....+. .......+.++++++.+++.+..+..+ ..||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35678999999988889999999988754432 223334566889999999987666553 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEec-CcEEEEEcCC
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKR-GGQEIYVGPL 1052 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~-gG~~~y~G~~ 1052 (1412)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999864 4899999999986 57788999999985 4899988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=357.28 Aligned_cols=214 Identities=21% Similarity=0.335 Sum_probs=187.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 589999999874 24589999999999999999999999999999999997664 479999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
.. ...++.+||++|+..++|++||+||+.|+...+ ..+..+.++.++++++.+++.+..+..+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999976433 2334455667899999999998877654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 999999999986 68899999999985 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 6
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=335.26 Aligned_cols=213 Identities=28% Similarity=0.373 Sum_probs=180.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 46788888774 24699999999999999999999999999999999997554 4799999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ...++.++|++|+..+++.+||+|++.+....+. ....+.++.++++++.+++.+..+..+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2334578999999999999999999988754432 223334456889999999987766554 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999987 57788999999985 89998887
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=322.77 Aligned_cols=217 Identities=25% Similarity=0.334 Sum_probs=179.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+... ....+|+|||++|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 478999998886321 122699999999999999999999999999999999997654 489999999875
Q ss_pred Ccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-hcccCCCCCCC
Q 000576 894 KQE----TFARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-QALVGLPGVNG 966 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~ 966 (1412)
... .+.+.+-+|+||+. +.|..||++.|.=.... ...++. .+++.++++.+||.+-. +.. ...
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 542 46778999999985 67999999988544322 122222 23389999999997632 322 347
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||||+||||||+.+|++|++|||||.||+..++.|++.|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999764 789999999987 47788999999996 89
Q ss_pred EEEEcCCC
Q 000576 1046 EIYVGPLG 1053 (1412)
Q Consensus 1046 ~~y~G~~~ 1053 (1412)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999973
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=333.41 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=178.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 36788988774 23599999999999999999999999999999999997654 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++..|++||+.+....+. ....+.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 223579999999988889999999987654321 223344556888999999987766554 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 57788999999985 7888876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=307.00 Aligned_cols=211 Identities=27% Similarity=0.350 Sum_probs=179.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
+..++|+++|..-+ =..+..|.+||++||+||||||||||||+++|...+ .+|.|.|||.+..
T Consensus 2 l~L~~V~~~y~~~~---------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHLP---------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcce---------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecC
Confidence 34677777775321 136789999999999999999999999999998775 4899999999865
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 Q-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
. ....|-++.++|+..++.++||.+|+-++..-. ... .++.+++++.++..+||.++.+.+.+ .|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~--LkL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG--LKL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCcc--ccc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHH
Confidence 4 345677899999999999999999997653211 112 23455679999999999999887754 69999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+++||+|+++-+||+||||.|.||+.-+..+...+.++.+ ++.|++++||+|+ |.....|+++++++ ||+.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999999999999999999999999999999999875 5899999999998 78999999999996 899999986
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=368.38 Aligned_cols=218 Identities=28% Similarity=0.438 Sum_probs=178.3
Q ss_pred ccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEE
Q 000576 807 VLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNI 886 (1412)
Q Consensus 807 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i 886 (1412)
..+.-+..++|+||+|+|+. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|...+ .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 34444568999999999963 223699999999999999999999999999999999998765 48999
Q ss_pred EEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-------hhh
Q 000576 887 TISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-------LRQ 956 (1412)
Q Consensus 887 ~i~g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~ 956 (1412)
.+||++.++ ..+++.+|||+|++.++. -|++||+.+.. ++.+.++ +.++++.-+..+ -.+
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~ 600 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYD 600 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccc
Confidence 999998654 567899999999888765 59999997642 2333222 333333333322 234
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhcc
Q 000576 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1036 (1412)
Q Consensus 957 ~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~ 1036 (1412)
+.+|.. +.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.+.. .|+|+|+++|+++ .+..+|+
T Consensus 601 t~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 601 TPVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 555544 45899999999999999999999999999999999999999999999986 4799999999986 6889999
Q ss_pred EeEEecCcEEEEEcCC
Q 000576 1037 LFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1037 v~ll~~gG~~~y~G~~ 1052 (1412)
+++|++ |+++..|+.
T Consensus 677 IiVl~~-Gkiv~~gs~ 691 (709)
T COG2274 677 IIVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEEccC-CceeccCCH
Confidence 999985 899999985
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=335.31 Aligned_cols=204 Identities=27% Similarity=0.423 Sum_probs=169.9
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIG 240 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~ 240 (1412)
+++++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 85 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFP 85 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhcc
Confidence 334457999999999999999999999999999999999999887 7999999998754322 357999999988888
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+||+||+.++....+... .+....++.+++.+||++..++.++
T Consensus 86 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 129 (213)
T cd03259 86 HLTVAENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYPH-- 129 (213)
T ss_pred CCcHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcChh--
Confidence 9999999988643221000 0011234567889999876665554
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|++++|+
T Consensus 130 ---~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 205 (213)
T cd03259 130 ---ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMN 205 (213)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 69999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEec
Q 000576 401 DGQIVYQG 408 (1412)
Q Consensus 401 ~G~iv~~G 408 (1412)
+|++++.|
T Consensus 206 ~G~i~~~g 213 (213)
T cd03259 206 EGRIVQVG 213 (213)
T ss_pred CCEEEecC
Confidence 99998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=313.05 Aligned_cols=209 Identities=29% Similarity=0.460 Sum_probs=176.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc---ceEEEEcCCCCcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIG 240 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~ 240 (1412)
..+.+|++||++++|||+++|+||||||||||||+|+|++.|+ +|++.+||++++.+.+. +.-|..+|+..+-+
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 3456999999999999999999999999999999999999997 79999999999887664 56789999988888
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
..||+|-+.++..-.+.+.. | .+...+.+..|...++.+.+. +
T Consensus 89 pFtv~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~-----R 131 (259)
T COG4559 89 PFTVQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAG-----R 131 (259)
T ss_pred ceEHHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhc-----c
Confidence 88999999998654321110 0 122334566777778877664 3
Q ss_pred ccccCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 321 MIRGISGGQRKRVTTGEMLVG------PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~------~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
..+.|||||||||.+||.|+. ++++||||||||+||...+..+++..+++++. +..|+.++|+..-+..++|
T Consensus 132 ~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhh
Confidence 455799999999999999974 45699999999999999999999999999984 3556668999999999999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 000576 395 DIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 395 ~vivL~~G~iv~~G~~~~~~ 414 (1412)
+|++|.+||++..|++++++
T Consensus 210 rivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 210 RIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeeCCeEeecCCHHHhc
Confidence 99999999999999999986
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=351.45 Aligned_cols=201 Identities=27% Similarity=0.377 Sum_probs=175.7
Q ss_pred eeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCH
Q 000576 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ--ETFARISGYCEQNDIHSPQVTV 917 (1412)
Q Consensus 840 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~yv~Q~~~~~~~lTv 917 (1412)
+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 4699999999999999999999999999999999997654 47999999987643 2345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000576 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997 (1412)
Q Consensus 918 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgL 997 (1412)
+|++.+.+.++. ....+.++.++++++.+++.+..+..+ +.||||||||++||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999998766542 223344556889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 998 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 998 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999877999999999987 67889999999985 899999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=335.83 Aligned_cols=209 Identities=30% Similarity=0.399 Sum_probs=174.7
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHI 239 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~ 239 (1412)
+++++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 344557999999999999999999999999999999999999887 799999998764321 135799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.+..+..+... .+....++.+++.+||++..++.++
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 130 (220)
T cd03265 86 DELTGWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK- 130 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-
Confidence 89999999998654322100 0112235678999999876666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+++|++++|
T Consensus 131 ----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l 205 (220)
T cd03265 131 ----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAII 205 (220)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999998653 2567777999999999999999999
Q ss_pred eCCeEEEecChhhH
Q 000576 400 SDGQIVYQGPREHV 413 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~ 413 (1412)
++|+++..|+++++
T Consensus 206 ~~G~i~~~~~~~~~ 219 (220)
T cd03265 206 DHGRIIAEGTPEEL 219 (220)
T ss_pred eCCEEEEeCChHHc
Confidence 99999999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=334.99 Aligned_cols=221 Identities=37% Similarity=0.611 Sum_probs=181.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-CeEEEEEEEcCccC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT-GYVTGNITISGYPK 893 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 893 (1412)
+.|+|+++.++.. +..+.+|+|+|+++++||+++|+||||||||||+++|+|.... ++.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688999887421 0135799999999999999999999999999999999997541 12579999999877
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
.....++.++|++|++.+++.+||+||+.|..................+++ .++.+++.+..+.. .+.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556779999999999999999999998765443222122222334555 88888887766544 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999985 8998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=355.27 Aligned_cols=215 Identities=23% Similarity=0.363 Sum_probs=187.1
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|+++.++ ...+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~ 82 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVD 82 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 3589999998874 24689999999999999999999999999999999997664 47999999987
Q ss_pred CCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 893 KKQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 893 ~~~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
+.. ...+|.+|||+|+..++|++||.||+.|....+ .....+.+++++++++.+++.+..+..+ ..|||||
T Consensus 83 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq 154 (377)
T PRK11607 83 LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQ 154 (377)
T ss_pred CCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 643 234578999999999999999999999876543 2234555667899999999988777653 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+ .|.|+|++||++. ++..++|++++|++ |+++..|
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g 232 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIG 232 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEc
Confidence 9999999999999999999999999999999999999999865 4899999999987 68899999999985 8999999
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
++
T Consensus 233 ~~ 234 (377)
T PRK11607 233 EP 234 (377)
T ss_pred CH
Confidence 86
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=354.13 Aligned_cols=217 Identities=22% Similarity=0.300 Sum_probs=184.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++|+.. ...+.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6789999888411 1135699999999999999999999999999999999997654 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ..++.+||++|+..+++.+||+||+.+....+. ....+.++.++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998754432 233444567889999999987766543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 57788999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99986
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=337.98 Aligned_cols=216 Identities=28% Similarity=0.378 Sum_probs=179.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 35788888773 23599999999999999999999999999999999997654 4799999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 895 QE---T-FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE-------VDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 895 ~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
.. . .++.++|++|++.+++.+||+|++.+......... ....+.++.++++++.+++.+..+..+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 32 1 23458999999999999999999988754332110 012334456889999999987665543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~- 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ- 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-
Confidence 479999999999999999999999999999999999999999999999877999999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 899998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=355.23 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=177.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 238 (1412)
.+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 356999999999999999999999999999999999999987 7999999998765432 3579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~- 138 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP- 138 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 899999999998754332100 011123567899999987766554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||+|++
T Consensus 139 ----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 139 ----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999998653 356777799999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=333.91 Aligned_cols=215 Identities=28% Similarity=0.416 Sum_probs=180.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5789999887421 0112699999999999999999999999999999999997654 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988999999999987654431 223444567889999999987766553 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=348.18 Aligned_cols=250 Identities=21% Similarity=0.378 Sum_probs=201.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhhcCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhccccccc
Q 000576 86 IDKLVKVPDVDNEKFLLKLKNRFDRVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKH 165 (1412)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1412)
+|+++.+.++++| +.+.........++..|.|+|+++.++ ++
T Consensus 509 mEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------------p~ 550 (790)
T KOG0056|consen 509 MENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------------PG 550 (790)
T ss_pred HHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC---------------------------------CC
Confidence 6777777777666 444444444555678899999999764 35
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC---ccceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV---PQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+||||++.||+.+|++||+|+||||++++|..+.+-+ +|.|+++|++++... .++.+|.|||+ ..+++.
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD-tvLFNd 626 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD-TVLFND 626 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc-ceeecc
Confidence 67999999999999999999999999999999999999876 899999999986543 35789999996 445567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|+..||.|+. |+...|+..+|+ ++..+.|. +++++++++|+||+++.
T Consensus 627 TI~yNIryak-------------------------~~AsneevyaAA-----kAA~IHdr---Il~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 627 TILYNIRYAK-------------------------PSASNEEVYAAA-----KAAQIHDR---ILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeeeheeecC-------------------------CCCChHHHHHHH-----HHhhHHHH---HhcCchhhhhhhhhccc
Confidence 9999999863 233223332222 22334454 56799999999999999
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|+ +.|..+.+ --+|.|+++++|
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV-vAHRLSTi-vnAD~ILvi~~G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV-VAHRLSTI-VNADLILVISNG 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE-Eeeeehhe-ecccEEEEEeCC
Confidence 6 999999999999999999999999999999999999999999999986 456666 44555443 457999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+|++.|.++|++.
T Consensus 749 ~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 749 RIVERGRHEELLK 761 (790)
T ss_pred eEeecCcHHHHHh
Confidence 9999999999975
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=337.01 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=180.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 36788888774 24699999999999999999999999999999999997654 4799999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 895 QE---T-FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 895 ~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
.. . .++.++|++|++.+++.+||+|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 31 1 23468999999999999999999987643322 223334456788999999987666543 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999987 68889999999985 8999988
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 75
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=336.98 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=181.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378999998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 894 KQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP-EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
... ..++.++|++|++.+++.+||+|++.+....+... .....+..+.++++++.+++.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 22456899999998888999999998865432110 0122233456788999999987666543 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999986 57788999999985 8999998
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=333.87 Aligned_cols=215 Identities=24% Similarity=0.339 Sum_probs=187.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.+.++|++|+|+. +..+|+|+|+.|++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 4689999999851 25799999999999999999999999999999999997664 369999999985
Q ss_pred C----cccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 894 K----QETFARISGYCEQNDIH-SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 894 ~----~~~~~~~~~yv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ...+++.+|||+|++.. +..-||.|.+.|+..-. ..+.++.+++++++++.+++.+.++.. ...||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 34577889999999753 55779999999986432 345556788999999999999987765 34799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
|||||||+||.+|+.+|++|+|||||||||+.+...+++.++++.++ |.|||+++|+.. .+.+.+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 789999999987 58888999999996 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=350.65 Aligned_cols=208 Identities=27% Similarity=0.399 Sum_probs=176.0
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 241 (1412)
+++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcC
Confidence 3456999999999999999999999999999999999999887 799999998864322 24679999999888889
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.+..+..+... .+....++.+++.+||++..++.++
T Consensus 92 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~--- 134 (303)
T TIGR01288 92 FTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA--- 134 (303)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh---
Confidence 999999987543221100 0011234567889999887777665
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.++||++++|++
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~ 210 (303)
T TIGR01288 135 --LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLES 210 (303)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 366777799999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+++++.+
T Consensus 211 G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 211 GRKIAEGRPHALID 224 (303)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=383.29 Aligned_cols=207 Identities=27% Similarity=0.415 Sum_probs=168.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|++. +++.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-LF~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQ-LPHG 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCc-CCCc
Confidence 46999999999999999999999999999999999999 76 7999999999887654 478999999765 5567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+|||.++.. +.+.+++.+++...+ ..+.+ -.|+++.||.||+++.
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~-----l~~~i---~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW-----VSEFL---PLLPQGLDTPIGDQAA 484 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC-----HHHHH---HhcccccccccccCCC
Confidence 99999998631 111222222221111 11222 2378888999998865
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|++.++|.. +..+.+|+|++|++|
T Consensus 485 -~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~---~~~TvIiItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 485 -GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS---RRQTTLMVTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEecCh-HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998864 345556577776 455779999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=331.26 Aligned_cols=207 Identities=30% Similarity=0.411 Sum_probs=175.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 36788888773 24699999999999999999999999999999999997654 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 Q-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
. ...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2335678999999988999999999987654321 1 1345788999999987766553 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877899999999987 57778999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=346.02 Aligned_cols=218 Identities=25% Similarity=0.391 Sum_probs=178.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-----ccceEEEEcCCCC-cC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-----PQRTAAYISQHDV-HI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 239 (1412)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 899999999886532 2367999999853 45
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC--ccccccc
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD--VCADTMV 317 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~v 317 (1412)
..+||+||+.|+....+.. .++....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999865332110 011223456789999996 44444
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
.++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.++||+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 44579999999999999999999999999999999999999999999998653 36778889999999999999999
Q ss_pred EEeCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000576 398 LISDGQIVYQGPREHVLE---FFEFMGFKCPE 426 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 426 (1412)
+|++|+++++|+++++.+ .....|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=356.45 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=184.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 894 KQE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
... ..++.+||++|+..+++.+||+||+.|....+. ....+.++.++++++.+++.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 234679999999999999999999998765432 233445567899999999987776654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+++|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 68889999999985 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 6
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=356.12 Aligned_cols=206 Identities=26% Similarity=0.435 Sum_probs=168.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 243 (1412)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|++||.+..+... +++++||+|++. ++..|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~-lf~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPY-LFAGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCc-ccccc
Confidence 7999999999999999999999999999999999999987 8999999999877654 589999999755 55679
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
+||||.++... ...++..++... ..+.+.+.-+++.||.+|+.+.
T Consensus 411 ireNi~l~~~~-------------------------~s~e~i~~al~~---------a~l~~~v~~p~GLdt~ige~G~- 455 (559)
T COG4988 411 IRENILLARPD-------------------------ASDEEIIAALDQ---------AGLLEFVPKPDGLDTVIGEGGA- 455 (559)
T ss_pred HHHHhhccCCc-------------------------CCHHHHHHHHHH---------hcHHHhhcCCCcccchhccCCC-
Confidence 99999997421 111111111100 0122333336788999997665
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
+|||||+|||++||||+++++++++||||++||.+|+..|.+.|.++++ ++|+++++|.... ..-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl~~-~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRLED-AADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcChHH-HhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999875 3556657777655 45679999999999
Q ss_pred EEEecChhhHHH
Q 000576 404 IVYQGPREHVLE 415 (1412)
Q Consensus 404 iv~~G~~~~~~~ 415 (1412)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=335.63 Aligned_cols=214 Identities=23% Similarity=0.292 Sum_probs=177.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCC-----CCCeEEEEEEEc
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK-----TTGYVTGNITIS 889 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~-----~~~~~~G~i~i~ 889 (1412)
++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 36788888773 235999999999999999999999999999999999975 3 357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCC
Q 000576 890 GYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964 (1412)
Q Consensus 890 g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 964 (1412)
|.+... ..+++.++|++|++.++ .+||+||+.+....+.. ....+.++.++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987542 23456789999998877 79999999886544321 1122234567889999999876554321 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 479999999999999999999999999999999999999999999999876 99999999987 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 99999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=342.50 Aligned_cols=215 Identities=24% Similarity=0.344 Sum_probs=181.1
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceE
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTA 229 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~ 229 (1412)
+++.++++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcE
Confidence 45566778888999999999999999999999999999999999999887 7999999988754321 2469
Q ss_pred EEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCC
Q 000576 230 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGL 309 (1412)
Q Consensus 230 ~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 309 (1412)
+|++|++.+++++||+||+.++....+... .+....++.+++.+||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l 150 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGL 150 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 999999888889999999998754321100 0011234568899999
Q ss_pred CccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 000576 310 DVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 310 ~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~ 389 (1412)
++..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++
T Consensus 151 ~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~ 224 (269)
T cd03294 151 EGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEA 224 (269)
T ss_pred HhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 877766654 69999999999999999999999999999999999999999999998653 356777789999999
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHH
Q 000576 390 YDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 390 ~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
.+++|++++|++|++++.|+++++.
T Consensus 225 ~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 225 LRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=337.76 Aligned_cols=218 Identities=25% Similarity=0.383 Sum_probs=176.0
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 86 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRL 86 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEeccccc
Confidence 34456999999999999999999999999999999999999886 7999999998765432 2459999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++....+... ... . ....+ ..+....++++++.+||++..++.+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~-------~~~---~---~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~- 141 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSG-------LLL---A---RARRE-----------EREARERAEELLERVGLADLADRPA- 141 (236)
T ss_pred ccCCCHHHHHHHHHhhccccc-------ccc---c---ccccc-----------HHHHHHHHHHHHHHcCccchhhCCh-
Confidence 999999999998754321000 000 0 00000 0011234567889999987666554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.+++|++++
T Consensus 142 ----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~ 215 (236)
T cd03219 142 ----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTV 215 (236)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEE
Confidence 47999999999999999999999999999999999999999999999865 356777789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+++++.
T Consensus 216 l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 216 LDQGRVIAEGTPDEVR 231 (236)
T ss_pred EeCCEEEeecCHHHhc
Confidence 9999999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=347.29 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=184.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ .+.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378899998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 894 KQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
.. ...++.+||++|++.+++.+||.|++.+.+.++. ...++..+.++++++.+++.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998776542 223344456889999999998877664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999987 68889999999985 89999998
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 6
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=337.77 Aligned_cols=211 Identities=28% Similarity=0.392 Sum_probs=174.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 243 (1412)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 356999999999999999999999999999999999999886 7999999988754332 357999999988888899
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.++....+...+. +. .+....++.+++.+||++..++.+ .
T Consensus 91 v~e~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (239)
T cd03296 91 VFDNVAFGLRVKPRSERP-------------------PE-----------AEIRAKVHELLKLVQLDWLADRYP-----A 135 (239)
T ss_pred HHHHHhhhhhhccccccC-------------------CH-----------HHHHHHHHHHHHHcCChhhhhcCh-----h
Confidence 999999865332110000 00 011123466888999977666554 4
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|++++|++|+
T Consensus 136 ~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGR 214 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 69999999999999999999999999999999999999999999998653 35667778999999999999999999999
Q ss_pred EEEecChhhHH
Q 000576 404 IVYQGPREHVL 414 (1412)
Q Consensus 404 iv~~G~~~~~~ 414 (1412)
+++.|+++++.
T Consensus 215 i~~~~~~~~~~ 225 (239)
T cd03296 215 IEQVGTPDEVY 225 (239)
T ss_pred EEEecCHHHHh
Confidence 99999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=356.22 Aligned_cols=218 Identities=27% Similarity=0.361 Sum_probs=185.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+ ++.+|+|+||.+++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 478999998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.+||++|+..+++.+||+|++.+....... ........++.++++++.+++.+..+..+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567799999999998999999999875321110 01012234567899999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||+.|||+|+++|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57889999999985 899999
Q ss_pred cCCC
Q 000576 1050 GPLG 1053 (1412)
Q Consensus 1050 G~~~ 1053 (1412)
|++.
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9873
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=336.07 Aligned_cols=210 Identities=21% Similarity=0.383 Sum_probs=175.2
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCC
Q 000576 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHD 236 (1412)
Q Consensus 161 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d 236 (1412)
++++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 8 KRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred EEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence 3344557999999999999999999999999999999999999887 7999999988754332 24699999998
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+++.+||+||+.+.....+.. + .+....++.+++.+|+++..++.
T Consensus 85 ~~~~~~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 130 (232)
T cd03218 85 SIFRKLTVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSK 130 (232)
T ss_pred cccccCcHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 8899999999998864322110 0 01112356788899998766655
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.+++|++
T Consensus 131 ~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 131 A-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999864 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+.+++.
T Consensus 204 ~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 204 YIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EEEECCeEEEEeCHHHhh
Confidence 999999999999987763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=335.41 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=181.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5789999887410 0012699999999999999999999999999999999997654 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 235678999999999999999999988654332 223344556789999999987666543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.60 Aligned_cols=224 Identities=24% Similarity=0.363 Sum_probs=181.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------CccceEEEEcCCC-Cc
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------VPQRTAAYISQHD-VH 238 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 238 (1412)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 79999999987521 1235799999985 34
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc-cccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV-CADTMV 317 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~v 317 (1412)
+...||.||+.|+.+..+... .+....++++++.+||++ ..++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 555799999999764322100 011234567888999963 4443
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+|++++|+.+++.+++|+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEE
Confidence 4457999999999999999999999999999999999999999999998864 36677889999999999999999
Q ss_pred EEeCCeEEEecChhhHH---HHHHhcCCCCCCCCChhHHH
Q 000576 398 LISDGQIVYQGPREHVL---EFFEFMGFKCPERKGVADFL 434 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 434 (1412)
+|++|+++++|+++++. +.++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999875 34456677776654444433
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=347.89 Aligned_cols=209 Identities=26% Similarity=0.370 Sum_probs=178.8
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHI 239 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~ 239 (1412)
+++++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~ 87 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCC
Confidence 334567999999999999999999999999999999999999987 899999998875422 235799999998889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.|.++..+... .+....++.+++.+||++..|+.++
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~- 132 (301)
T TIGR03522 88 LDMYVREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG- 132 (301)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-
Confidence 99999999998765432100 0112235678999999988776654
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
.|||||||||+||+||+++|++|+|||||+|||+.++..+.+.|+++.. +++|+.++|..+++.++||+|++|
T Consensus 133 ----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 133 ----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999742 467777999999999999999999
Q ss_pred eCCeEEEecChhhHHH
Q 000576 400 SDGQIVYQGPREHVLE 415 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~~ 415 (1412)
++|++++.|+.+++..
T Consensus 206 ~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 206 NKGKIVADKKLDELSA 221 (301)
T ss_pred ECCEEEEeCCHHHHHH
Confidence 9999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=332.51 Aligned_cols=209 Identities=28% Similarity=0.406 Sum_probs=173.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++.. +..+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 3678998887411 0114699999999999999999999999999999999997654 4799999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCC
Q 000576 895 QET-------FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 895 ~~~-------~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~l 967 (1412)
... .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+++.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24578999999999999999999998765432 222334456889999999987666543 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 968 SgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999986 34 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=335.27 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=173.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCCcCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDVHIG 240 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 240 (1412)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 7999999998764321 357999999988888
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+||+||+.++....+... ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988653321100 001123466889999987666544
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999887763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=337.66 Aligned_cols=217 Identities=27% Similarity=0.336 Sum_probs=177.8
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 357888887741 14699999999999999999999999999999999997653 4799999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 895 Q------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLR-----LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
. ...++.++|++|++.+++.+||+||+.+..... ...........+.++++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR----- 141 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----
Confidence 2 124567899999999999999999997753210 000111123345678899999997665544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 3479999999999999999999999999999999999999999999998764 899999999987 57779999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 221 -G~i~~~~~~ 229 (241)
T cd03256 221 -GRIVFDGPP 229 (241)
T ss_pred -CEEEeecCH
Confidence 899999875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=330.79 Aligned_cols=203 Identities=30% Similarity=0.436 Sum_probs=170.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 241 (1412)
++++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 33456999999999999999999999999999999999999886 7999999998754332 3579999999888888
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.++.+..+... .+....++.+++.+||++..+..++
T Consensus 87 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 129 (213)
T cd03301 87 MTVYDNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKPK--- 129 (213)
T ss_pred CCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCChh---
Confidence 999999988643321100 0112235668899999877666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|++
T Consensus 130 --~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 130 --QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 356677789999999999999999999
Q ss_pred CeEEEec
Q 000576 402 GQIVYQG 408 (1412)
Q Consensus 402 G~iv~~G 408 (1412)
|++++.|
T Consensus 207 g~~~~~g 213 (213)
T cd03301 207 GQIQQIG 213 (213)
T ss_pred CEEEecC
Confidence 9999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.60 Aligned_cols=214 Identities=20% Similarity=0.332 Sum_probs=180.8
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 57889998773 24599999999999999999999999999999999997653 4799999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 895 Q-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. ...++.++|++|++.+++.+||+|++.+...... .....+.++.++++++.+++.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2335678999999988999999999987542111 1233344566889999999987666543 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999987 57778999999985 899999
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 885
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.37 Aligned_cols=214 Identities=25% Similarity=0.403 Sum_probs=179.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++. .++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 467888887741 114699999999999999999999999999999999997654 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ..+++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..+..+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654432 223333456789999999987666543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999876 599999999987 57778999999985 899998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=336.39 Aligned_cols=215 Identities=24% Similarity=0.346 Sum_probs=180.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 378999998874 23599999999999999999999999999999999997654 479999999875
Q ss_pred Cc-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCC
Q 000576 894 KQ-----------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962 (1412)
Q Consensus 894 ~~-----------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 962 (1412)
.. ...++.++|++|++.+++..|++||+.+...... ........+.++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 141 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY---- 141 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC----
Confidence 42 1234578999999988999999999987543211 122334455688899999998765544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~ 219 (250)
T PRK11264 142 -PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ 219 (250)
T ss_pred -hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 220 -G~i~~~~~~ 228 (250)
T PRK11264 220 -GRIVEQGPA 228 (250)
T ss_pred -CEEEEeCCH
Confidence 899999875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.17 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=179.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 48899999887411 0114699999999999999999999999999999999997654 489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 894 KQET------F-ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 894 ~~~~------~-~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
.... . ++.++|++|+..+++.+|++||+.+....+ .....+.++.++++++.+++.+..+..+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 2 256899999998899999999998865432 1223344566889999999987665543 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 44689999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998886
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=329.88 Aligned_cols=203 Identities=29% Similarity=0.391 Sum_probs=168.9
Q ss_pred EeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcc
Q 000576 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE 896 (1412)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~ 896 (1412)
++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+....
T Consensus 2 ~~~l~~~~~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYKK------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeCC------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhH
Confidence 5677777631 13599999999999999999999999999999999997654 479999999876544
Q ss_pred cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHH
Q 000576 897 TFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRL 975 (1412)
Q Consensus 897 ~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl 975 (1412)
..++.++|++|++. .+...|++||+.+...... . ..+.++++++.+++.+..+..+ ..||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 44567999999974 3456799999987543221 1 1245788999999987766553 47999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 976 ~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999999999999999999999777999999999987 57778999999986 6764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.74 Aligned_cols=200 Identities=28% Similarity=0.405 Sum_probs=169.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHH
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 245 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 245 (1412)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 56999999999999999999999999999999999999886 7999999988753 246799999998888889999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccC
Q 000576 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325 (1412)
Q Consensus 246 e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~L 325 (1412)
||+.++....+... .+....++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998654321100 001123566889999987666554 469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe--CCe
Q 000576 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS--DGQ 403 (1412)
Q Consensus 326 SGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~--~G~ 403 (1412)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987543 35667778999999999999999999 799
Q ss_pred EEEecCh
Q 000576 404 IVYQGPR 410 (1412)
Q Consensus 404 iv~~G~~ 410 (1412)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.97 Aligned_cols=207 Identities=24% Similarity=0.407 Sum_probs=170.7
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDV 237 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~ 237 (1412)
+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (222)
T cd03224 9 GYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85 (222)
T ss_pred ecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccc
Confidence 344457999999999999999999999999999999999999987 7999999988755432 356999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHh-CCCcccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~ 316 (1412)
+++.+||+||+.++....+. . +.....+.+++.+ ++++..++.
T Consensus 86 ~~~~~t~~~~l~~~~~~~~~-~-----------------------------------~~~~~~~~~l~~~~~l~~~~~~~ 129 (222)
T cd03224 86 IFPELTVEENLLLGAYARRR-A-----------------------------------KRKARLERVYELFPRLKERRKQL 129 (222)
T ss_pred cCCCCcHHHHHHHHhhhcCc-h-----------------------------------hHHHHHHHHHHHHHhhhhhhhCc
Confidence 89999999999886432210 0 0011233455666 465555544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ +.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+.+++.+++|++
T Consensus 130 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 130 A-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEE
Confidence 4 46999999999999999999999999999999999999999999999864 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+.+++.
T Consensus 203 ~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 203 YVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEeeCCeEEEeCCHHHHh
Confidence 999999999999887753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=379.08 Aligned_cols=209 Identities=27% Similarity=0.447 Sum_probs=171.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 241 (1412)
++++|+|+|++++|||.+||+||+|||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF-~ 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-S 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceee-c
Confidence 456999999999999999999999999999999999999997 7999999999987654 57899999965555 5
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
.||+|||.++..- .+.++..+++... ...|.+.+ ++++.||.||+++
T Consensus 417 ~TI~~NI~~g~~~-------------------------at~eei~~a~k~a-----~~~d~I~~---lp~g~dt~vge~G 463 (567)
T COG1132 417 GTIRENIALGRPD-------------------------ATDEEIEEALKLA-----NAHEFIAN---LPDGYDTIVGERG 463 (567)
T ss_pred ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHh-----ChHHHHHh---CcccccceecCCC
Confidence 8999999997421 1112222222111 12233333 6888999999766
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
. .||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++ +.|..+.+.+ +|+|++|++
T Consensus 464 ~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 464 V-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 6 6999999999999999999999999999999999999999999997653 345555 7888766655 999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999975
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.10 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=173.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 57889998773 123599999999999999999999999999999999997654 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. .+++.++|++|++.+++.+|++|++.+....+. ......++.++++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 245678999999988999999999988754331 223334456889999999987655543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=334.30 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=171.0
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCC-----CCCCCceeEEEECCccCCCcC-----ccceEEE
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL-----DSSLRLYGRVTYNGHNMDEFV-----PQRTAAY 231 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~y 231 (1412)
+++++++|+|+|+++++||+++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~ 85 (227)
T cd03260 9 YYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGM 85 (227)
T ss_pred EcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEE
Confidence 334457999999999999999999999999999999999998 765 799999999875432 2357999
Q ss_pred EcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 232 v~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
++|++.++ .+||+||+.++.+..+.... .+....++.+++.+||++
T Consensus 86 ~~q~~~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~ 131 (227)
T cd03260 86 VFQKPNPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWD 131 (227)
T ss_pred EecCchhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCCh
Confidence 99998777 89999999986543211000 001123456888999987
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
..+..+. +..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ + ++|++++|+.+++.+
T Consensus 132 ~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 132 EVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAAR 205 (227)
T ss_pred HHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHH
Confidence 6554430 347999999999999999999999999999999999999999999999865 3 677778999999999
Q ss_pred hcCeEEEEeCCeEEEecChhh
Q 000576 392 LFDDIILISDGQIVYQGPREH 412 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G~~~~ 412 (1412)
++|++++|++|++++.|++++
T Consensus 206 ~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 206 VADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred hCCEEEEEeCCEEEEecCccc
Confidence 999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=349.64 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=176.8
Q ss_pred ceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcc---cc----cceEEEeccCCCC
Q 000576 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE---TF----ARISGYCEQNDIH 911 (1412)
Q Consensus 839 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~~yv~Q~~~~ 911 (1412)
.+.+|+|+||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++... .+ ++.++||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 35699999999999999999999999999999999997654 479999999886532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000576 912 SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991 (1412)
Q Consensus 912 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlD 991 (1412)
+|++||+||+.|...+. ....++..+++.++++.++|.+..+... ..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2344556678899999999987776654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 992 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 992 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|||++||+.++..+++.++++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999998754 899999999986 57889999999985 899999986
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=331.90 Aligned_cols=203 Identities=28% Similarity=0.429 Sum_probs=171.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 243 (1412)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999887 899999998875321 2356999999988888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.+..+..+... .+....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999988654322100 0011234567889999877766554
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.+++.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999753 3677778999999999999999999999
Q ss_pred EEEecChhhH
Q 000576 404 IVYQGPREHV 413 (1412)
Q Consensus 404 iv~~G~~~~~ 413 (1412)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.94 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=176.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------CccceEEEEcCCC-C
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------VPQRTAAYISQHD-V 237 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 237 (1412)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 79999999987531 1135799999985 2
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 316 (1412)
.+...||+||+.|+.+..+... .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 4556799999998754322100 01122456789999996 445544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++.. .+++|++++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4479999999999999999999999999999999999999999999998653 3667777999999999999999
Q ss_pred EEEeCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000576 397 ILISDGQIVYQGPREHVLE---FFEFMGFKCPE 426 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 426 (1412)
++|++|+++++|+++++.+ .+...++.+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 23344444443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.48 Aligned_cols=211 Identities=28% Similarity=0.427 Sum_probs=175.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ .+.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 46788888763 23589999999999999999999999999999999997654 4799999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCchhhhcccCCCCCCCCCH
Q 000576 895 QE---T-FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.+..++++++.+ ++.+..+.. ...|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 32 1 24568999999999999999999988654321 122334566777777 465554543 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++ ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57788999999985 899998
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.28 Aligned_cols=207 Identities=26% Similarity=0.379 Sum_probs=173.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 35788888773 124699999999999999999999999999999999997554 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ..++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..+..+ ..||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 245679999999999999999999988754332 223344556889999999987666543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. .+.+.+|++++|++ |+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 56778999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=329.50 Aligned_cols=201 Identities=24% Similarity=0.370 Sum_probs=168.9
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 242 (1412)
++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~ 85 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKM 85 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCC
Confidence 34456999999999999999999999999999999999999886 8999999987754 2346799999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.+..+..+... .+....++++++.+||++..++.+
T Consensus 86 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 126 (210)
T cd03269 86 KVIDQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV----- 126 (210)
T ss_pred cHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----
Confidence 99999988654322100 011123566888999987666554
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++.+|+.++|+.+++.+++|++++|++|
T Consensus 127 ~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999764 3567777899999999999999999999
Q ss_pred eEEEec
Q 000576 403 QIVYQG 408 (1412)
Q Consensus 403 ~iv~~G 408 (1412)
++++.|
T Consensus 205 ~i~~~~ 210 (210)
T cd03269 205 RAVLYG 210 (210)
T ss_pred EEEecC
Confidence 998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=334.29 Aligned_cols=212 Identities=26% Similarity=0.337 Sum_probs=179.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67899998773 24599999999999999999999999999999999997654 4799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
. ..+.++|++|+..+++.+||+||+.+....+. ....+.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 23457999999988899999999987644321 223344556889999999987665443 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEec-CcEEEEEcCC
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKR-GGQEIYVGPL 1052 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~-gG~~~y~G~~ 1052 (1412)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57788999999985 5899988765
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=334.07 Aligned_cols=214 Identities=25% Similarity=0.365 Sum_probs=179.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++. .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 357888887741 13599999999999999999999999999999999997654 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch--hhhcccCCCCCCCCCH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL--LRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~vg~~~~~~lSg 969 (1412)
. ...++.++|++|++.+++.+||+||+.+...++. .......+.++++++.+++.+ ..+.. .+.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 2345678999999999999999999987654431 223344556889999999975 44443 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 57788999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 8875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=341.20 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=180.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||++.|+... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 378999999884210 0124699999999999999999999999999999999997654 479999999886
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--hhhhcccCCCCCC
Q 000576 894 KQ-----ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN--LLRQALVGLPGVN 965 (1412)
Q Consensus 894 ~~-----~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~ 965 (1412)
.. ...++.+||++|++. .+...||+|++.|..... ....++..+.++++++.++|. +..+.. ..
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PF 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cc
Confidence 53 134567999999863 334579999998865432 234455556789999999996 444443 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13637 222 KCELQGTP 229 (287)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=353.61 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=178.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHI 239 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 239 (1412)
++++++|+|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|+..++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~ 89 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCC
Confidence 34567999999999999999999999999999999999999987 7999999998765432 36799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++..... .++. .. ..+....++++++.+||.+..|+.+
T Consensus 90 ~~~tv~e~v~~~~~~~~--~~~~----------------~~------------~~~~~~~v~~~le~vgl~~~~~~~~-- 137 (402)
T PRK09536 90 FEFDVRQVVEMGRTPHR--SRFD----------------TW------------TETDRAAVERAMERTGVAQFADRPV-- 137 (402)
T ss_pred CCCCHHHHHHhccchhc--cccc----------------CC------------CHHHHHHHHHHHHHcCCchhhcCCh--
Confidence 99999999998642110 0000 00 0012234677899999987776554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+.|||||||||.|||||+++|++|+|||||+|||+.++.++.+.|+++++ .+++|++++|+.+++.+++|++++|
T Consensus 138 ---~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 138 ---TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999875 3567777999999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 213 ~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 213 ADGRVRAAGPPADVL 227 (402)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999998864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=331.38 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=164.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCcC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 239 (1412)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999887 799999998875432 235799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999998754321100 001123566889999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.+++|++++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR--RGTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999854 3567777999999999999999999
Q ss_pred eCCeE
Q 000576 400 SDGQI 404 (1412)
Q Consensus 400 ~~G~i 404 (1412)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.72 Aligned_cols=217 Identities=24% Similarity=0.294 Sum_probs=177.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 57889988763 023599999999999999999999999999999999997654 4799999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 895 Q------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLR-----LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
. ..+++.++|++|++.+++.+||+||+.+..... ........+.++.++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 124567999999998999999999997642110 000111223345678899999998766554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3479999999999999999999999999999999999999999999998754 899999999987 57788999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 899998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=334.66 Aligned_cols=214 Identities=29% Similarity=0.409 Sum_probs=173.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCcC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 239 (1412)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 56999999999999999999999999999999999999886 799999999876543 135799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++..... .... .. .+..+ ......++.+++.+||++..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~---~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWR---SL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhh---hh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 89999999987642110 0000 00 00000 011123456788999976655544
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.52 Aligned_cols=215 Identities=25% Similarity=0.327 Sum_probs=180.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++. ...+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4789999988741 23599999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.+||++|++. .++..||.|++.|..... .....+.++.++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223467999999863 445689999998764321 2233344456889999999987766654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999985 899999
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 985
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=338.15 Aligned_cols=205 Identities=20% Similarity=0.330 Sum_probs=172.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCC-CcCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 241 (1412)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999987 8999999998764322 35799999986 36778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.|+.+..+... .+....++++++.+||++..|..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999998753322100 011224567899999987666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..+|+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 366777788998888 58999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999998875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=338.36 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=172.0
Q ss_pred ceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000576 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE---T----FARISGYCEQNDIH 911 (1412)
Q Consensus 839 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~yv~Q~~~~ 911 (1412)
.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 35699999999999999999999999999999999997654 479999999876421 1 13568999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000576 912 SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991 (1412)
Q Consensus 912 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlD 991 (1412)
++.+||+||+.+...... .......+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999988654321 223334456888999999987776654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 992 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 992 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999998754 899999999986 57788999999985 899999875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.85 Aligned_cols=198 Identities=25% Similarity=0.346 Sum_probs=164.5
Q ss_pred cccccc-ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCC-
Q 000576 160 SSRKKH-ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDV- 237 (1412)
Q Consensus 160 ~~~~~~-~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~- 237 (1412)
++++++ +++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 82 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDY 82 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhh
Confidence 333444 57999999999999999999999999999999999999887 8999999988754333467999999863
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
.++.+||+||+.++....+ .....++.+++.+||++..++.+
T Consensus 83 ~~~~~tv~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~ 124 (205)
T cd03226 83 QLFTDSVREELLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHP 124 (205)
T ss_pred hhhhccHHHHHhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCc
Confidence 3557899999987542210 00113456889999987766555
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+ .||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++.++|+.+++.+++|+++
T Consensus 125 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~ 197 (205)
T cd03226 125 L-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDYEFLAKVCDRVL 197 (205)
T ss_pred h-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 6999999999999999999999999999999999999999999999864 35677778999999999999999
Q ss_pred EEeCCeEE
Q 000576 398 LISDGQIV 405 (1412)
Q Consensus 398 vL~~G~iv 405 (1412)
+|++|+++
T Consensus 198 ~l~~G~iv 205 (205)
T cd03226 198 LLANGAIV 205 (205)
T ss_pred EEECCEEC
Confidence 99999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=333.71 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=172.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 56999999999999999999999999999999999999886 7999999988754322 35789999998888899
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc--cccccccCc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV--CADTMVGDE 320 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~~ 320 (1412)
||+||+.++.+..+... .+....++.+++.+||++ ..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~----- 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR----- 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----
Confidence 99999988643321100 001123456888999975 4443
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 34579999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=336.37 Aligned_cols=215 Identities=19% Similarity=0.310 Sum_probs=181.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 589999998873 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCC
Q 000576 894 KQE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 894 ~~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~l 967 (1412)
... ..++.++|++|+..+++.+||.||+.+...... .......++.+.++++.+++.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988999999999987543211 1223334456788999999987766543 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 968 SgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 ~y~G~~ 1052 (1412)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.57 Aligned_cols=204 Identities=26% Similarity=0.324 Sum_probs=171.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 241 (1412)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999987 7999999998764322 357999999852 5667
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.|+.+..+.. ..+....++.+++.+||.+..++.+.
T Consensus 95 ~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~--- 137 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPPY--- 137 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCChh---
Confidence 89999999864322110 00112235678899999876665554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|+.+++.+++|+|++|++
T Consensus 138 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 138 --HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 66777799999999999999999999
Q ss_pred CeEEEecChhhH
Q 000576 402 GQIVYQGPREHV 413 (1412)
Q Consensus 402 G~iv~~G~~~~~ 413 (1412)
|++++.|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=350.82 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=179.2
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEc
Q 000576 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYIS 233 (1412)
Q Consensus 161 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 233 (1412)
+.++...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+
T Consensus 36 ~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred hhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 3445667999999999999999999999999999999999999987 7999999998765432 24799999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|+..+++++||+||+.|+.+..+... .+....++++++.+||++..
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYA 158 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhh
Confidence 99999999999999999765432100 01112356789999998766
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++
T Consensus 159 ~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 159 HSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred hcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhC
Confidence 6554 479999999999999999999999999999999999999999999998653 3567777999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000576 394 DDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~ 414 (1412)
|+|++|++|+++..|+++++.
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CEEEEEECCEEEecCCHHHHH
Confidence 999999999999999988874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=316.98 Aligned_cols=217 Identities=27% Similarity=0.369 Sum_probs=187.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
-++.++++.++. ...+++|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|.++
T Consensus 4 lL~v~~l~k~FG-------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFG-------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecC-------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCccc
Confidence 367888887763 57899999999999999999999999999999999997765 479999999987
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCchhhhcccC
Q 000576 894 KQET----FARISGYCEQNDIHSPQVTVYESLLYSAWLRL--------SPE-VDSKTRKMFIEEVMELVELNLLRQALVG 960 (1412)
Q Consensus 894 ~~~~----~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~--------~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~vg 960 (1412)
.... .+.-++-.+|...+++.+||.||+..++..+. +.. ...++..++..++++.+||.+.+|...|
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 6422 23457788999999999999999988755331 111 1234455678899999999999998865
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeE
Q 000576 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1039 (1412)
Q Consensus 961 ~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~l 1039 (1412)
+||+||||||.|||||+.+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+.+ -++.+||||++
T Consensus 149 -----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~V 222 (250)
T COG0411 149 -----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVV 222 (250)
T ss_pred -----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEe
Confidence 69999999999999999999999999999999999999999999999874 799999999998 48999999999
Q ss_pred EecCcEEEEEcCC
Q 000576 1040 LKRGGQEIYVGPL 1052 (1412)
Q Consensus 1040 l~~gG~~~y~G~~ 1052 (1412)
|+. |+++..|++
T Consensus 223 l~~-G~~IAeG~P 234 (250)
T COG0411 223 LNY-GEVIAEGTP 234 (250)
T ss_pred ccC-CcCcccCCH
Confidence 995 899999998
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=342.39 Aligned_cols=217 Identities=20% Similarity=0.396 Sum_probs=174.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------------------Ccc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------------------VPQ 226 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 226 (1412)
+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999987 79999999887532 113
Q ss_pred ceEEEEcCCC-CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 000576 227 RTAAYISQHD-VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILK 305 (1412)
Q Consensus 227 ~~~~yv~Q~d-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 305 (1412)
+.++||+|++ ..+...||+||+.|+....+.. . .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 6799999985 2344569999999874322110 0 011123556888
Q ss_pred HhCCC-ccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000576 306 ILGLD-VCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQ 384 (1412)
Q Consensus 306 ~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~ 384 (1412)
.+||+ ...+ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. +++||++++|
T Consensus 162 ~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITH 234 (320)
T ss_pred HcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEec
Confidence 99996 3344 33457999999999999999999999999999999999999999999998754 3667777999
Q ss_pred ChhhHHhhcCeEEEEeCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000576 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLE---FFEFMGFKCPE 426 (1412)
Q Consensus 385 ~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 426 (1412)
+.+++.+++|+|++|++|++++.|+++++.+ .++..|+..|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999999999999988742 34445555544
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=325.80 Aligned_cols=209 Identities=33% Similarity=0.489 Sum_probs=175.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|+++++| +++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 36788888773 236999999999999 9999999999999999999997654 4799999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ...++.++|++|++.+++.+||.|++.+....+. ....+.++.++++++.+++.+..+..+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345678999999999999999999988655432 222333456788999999987766543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999986 46778999999985 7888764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=337.70 Aligned_cols=208 Identities=22% Similarity=0.352 Sum_probs=173.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 238 (1412)
++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 456999999999999999999999999999999999999886 7999999988754321 3569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++++||+||+.++...... ++ . .+....++.+++.+||++..++.++
T Consensus 96 ~~~~tv~enl~~~~~~~~~---~~------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 142 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHTQ---LP------A------------------------PLLHSTVMMKLEAVGLRGAAKLMPS 142 (269)
T ss_pred CCCCCHHHHHHHHHHHccC---CC------H------------------------HHHHHHHHHHHHHcCChhhhhCChh
Confidence 8889999999886421100 00 0 0011234567889999887766554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++
T Consensus 143 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 143 -----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEE
Confidence 69999999999999999999999999999999999999999999998653 356777789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 217 VADKKIVAHGSAQALQ 232 (269)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=324.01 Aligned_cols=224 Identities=25% Similarity=0.368 Sum_probs=195.7
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQH 235 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 235 (1412)
.+...-++|+|++|+.||+..|+|=||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 34455799999999999999999999999999999999999998 8999999999876544 3679999999
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
..++|+.||.||..|+.+.+|+... +.+.+..+.|+.+||+...+.
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~ 160 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADK 160 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhc
Confidence 9999999999999999999886421 223345678999999988875
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
++ +.||||+||||.|||||+.+|+||+||||+|+|||--+.+..+.|.++-+.. ++||+.++|+.+|++++.||
T Consensus 161 yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 161 YP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred Cc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccce
Confidence 54 4799999999999999999999999999999999999999999999987665 56677799999999999999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhh
Q 000576 396 IILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEV 437 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 437 (1412)
|.+|.+|+|+..|+++|++. .|...-+++|...+
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999999964 46666667776654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=326.98 Aligned_cols=198 Identities=24% Similarity=0.382 Sum_probs=167.4
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-CccceEEEEcCCCCcCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-VPQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~ 241 (1412)
++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCcc
Confidence 34457999999999999999999999999999999999999886 89999999877542 123579999999888889
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.+.....+. ....++.+++.+||++..++.+
T Consensus 87 ~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~---- 124 (208)
T cd03268 87 LTARENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV---- 124 (208)
T ss_pred CcHHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH----
Confidence 9999999886432110 0112456788899987666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+.++++++|+.+++.+++|++++|++
T Consensus 125 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 125 -KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999865 356677789999999999999999999
Q ss_pred CeEEEec
Q 000576 402 GQIVYQG 408 (1412)
Q Consensus 402 G~iv~~G 408 (1412)
|++++.|
T Consensus 202 g~i~~~g 208 (208)
T cd03268 202 GKLIEEG 208 (208)
T ss_pred CEEEecC
Confidence 9998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=332.06 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=181.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 478899998873 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
... ..++.++|++|++.+++.+||.||+.+...++. ....++.+..++++++.+++.+..+.. .+.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCH
Confidence 431 134568999999988999999999987643321 122334456688899999997765544 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.+.|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999998877999999999986 57889999999985 899999
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|+.
T Consensus 219 ~~~ 221 (241)
T PRK10895 219 GTP 221 (241)
T ss_pred CCH
Confidence 885
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=329.08 Aligned_cols=217 Identities=23% Similarity=0.294 Sum_probs=172.8
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++.. .....+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5789999887411 0013699999999999999999999999999999999997654 4799999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCC
Q 000576 895 Q------ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~------~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 965 (1412)
. ..+++.++|++|++ .+.+.+||+||+.+........ ......+...+++++.+++. ...+.. ..
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4667899999998765433211 11111122235788889884 444443 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56678999999985 7
Q ss_pred EEEEEc
Q 000576 1045 QEIYVG 1050 (1412)
Q Consensus 1045 ~~~y~G 1050 (1412)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=312.26 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=178.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+..|. +.++|++||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++
T Consensus 3 mL~v~~l~~~YG-------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYG-------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeeccc-------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeec
Confidence 378899988774 36799999999999999999999999999999999997654 379999999997
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CchhhhcccCCCCCCCCC
Q 000576 894 KQE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE-LNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~lS 968 (1412)
+.. ..++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+- |.+.++...| .||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LS 138 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLS 138 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCC
Confidence 642 2455689999999999999999999987655432 1111222677777774 4455555443 699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
|||||-++|||||+++|++|+|||||.||-|.-...|.++|+++.++ |.||+.+-+... ...+.+||.++|.+ |+++
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv 216 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIV 216 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEE
Confidence 99999999999999999999999999999999999999999999966 779999888765 47789999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 217 ~~G~~ 221 (237)
T COG0410 217 LSGTA 221 (237)
T ss_pred EecCH
Confidence 99996
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.69 Aligned_cols=209 Identities=23% Similarity=0.302 Sum_probs=174.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 57899998873 123599999999999999999999999999999999997654 4799999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. .+++.++|++|++.+++..|++||+.+....+ .....+..+.++++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888999999998865433 1233344456788999999987665543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999987 57778999999986 6753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=340.18 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=179.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++|+... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 78999999885210 0123599999999999999999999999999999999997654 4799999998763
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCC
Q 000576 895 Q-------ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~-------~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 965 (1412)
. ..+++.+|||+|++. .+...||+||+.|..... ....++.++.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999862 233579999998875432 223444456789999999996 455543 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 899999999987 57888999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.59 Aligned_cols=195 Identities=28% Similarity=0.410 Sum_probs=163.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 56999999999999999999999999999999999999887 7999999998765331 3579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 889999999998754322100 001123566889999987666554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++. ++|++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEE
Confidence 469999999999999999999999999999999999999999999998652 3567777889888876 9999999
Q ss_pred EeCCeE
Q 000576 399 ISDGQI 404 (1412)
Q Consensus 399 L~~G~i 404 (1412)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=338.19 Aligned_cols=216 Identities=25% Similarity=0.380 Sum_probs=181.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|+++.++ +++.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~ 69 (283)
T PRK13636 4 YILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKP 69 (283)
T ss_pred ceEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEE
Confidence 3589999999884 123599999999999999999999999999999999997654 47999999987
Q ss_pred CCc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 893 KKQ-----ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 893 ~~~-----~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
... ..+++.+||++|++. .+...||+|++.+..... ..+..+.++.++++++.+++.+..+.. .+.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~ 141 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THC 141 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----ccc
Confidence 631 234567999999864 334679999998764322 223444456789999999998776655 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~ 219 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GR 219 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999987 46678999999986 79
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 220 i~~~g~~ 226 (283)
T PRK13636 220 VILQGNP 226 (283)
T ss_pred EEEeCCH
Confidence 9999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=342.38 Aligned_cols=205 Identities=23% Similarity=0.352 Sum_probs=170.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCC-----------------------
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE----------------------- 222 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------------------- 222 (1412)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999987 7999999875421
Q ss_pred ----cCccceEEEEcCCC-CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhh
Q 000576 223 ----FVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEAS 297 (1412)
Q Consensus 223 ----~~~~~~~~yv~Q~d-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1412)
...++.+|||+|++ ..++..||+||+.|+....+... ++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01135799999984 45567899999998754322100 0112
Q ss_pred HHHHHHHHHhCCC-ccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 000576 298 VVTDYILKILGLD-VCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG 376 (1412)
Q Consensus 298 ~~~~~il~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~ 376 (1412)
..++.+++.+||+ +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QG 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CC
Confidence 2456788999996 445544 457999999999999999999999999999999999999999999999864 36
Q ss_pred eEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 377 TTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 377 t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
++|++++|+.+++.+++|+|++|++|+++++|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 77888999999999999999999999999999998875
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=333.08 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=180.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 488999998874 24699999999999999999999999999999999997654 479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCchhh-
Q 000576 894 KQ----------------ETFARISGYCEQNDIHSPQVTVYESLLYSAW-LRLSPEVDSKTRKMFIEEVMELVELNLLR- 955 (1412)
Q Consensus 894 ~~----------------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~- 955 (1412)
.. ..+++.++|++|++.+++.+||+||+.+... .. .....+.++.++++++.+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335678999999999999999999987542 21 123344456788999999997653
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhc
Q 000576 956 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1035 (1412)
Q Consensus 956 ~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD 1035 (1412)
+.. ...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|+++ ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 432 3579999999999999999999999999999999999999999999999877999999999987 5777899
Q ss_pred cEeEEecCcEEEEEcCC
Q 000576 1036 ELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1036 ~v~ll~~gG~~~y~G~~ 1052 (1412)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899999875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=326.26 Aligned_cols=207 Identities=23% Similarity=0.338 Sum_probs=173.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+++|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 35788888774 24599999999999999999999999999999999997654 4799999998763
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 895 Q-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. ..+++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..+..+ ..|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 2345679999999999999999999987642111 1223344556788999999987666543 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877899999999986 57788999999986 55
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=346.76 Aligned_cols=213 Identities=25% Similarity=0.322 Sum_probs=180.4
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCc----cCCCcCc-------cc
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH----NMDEFVP-------QR 227 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~ 227 (1412)
+.++++...+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++..... ++
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcC
Confidence 345667788999999999999999999999999999999999999987 799999996 3332211 14
Q ss_pred eEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHh
Q 000576 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL 307 (1412)
Q Consensus 228 ~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 307 (1412)
.++||+|+..+++.+||+||+.|+.+..+... .+....++++++.+
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~v 152 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELV 152 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHc
Confidence 69999999999999999999999864432110 01122456789999
Q ss_pred CCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 000576 308 GLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAP 387 (1412)
Q Consensus 308 gL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~ 387 (1412)
||++..|..++ .|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+. .+++|+.++|+.+
T Consensus 153 gL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~ 226 (382)
T TIGR03415 153 GLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK-LNKTIIFVSHDLD 226 (382)
T ss_pred CCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 99887766554 69999999999999999999999999999999999999999999998653 3567777999999
Q ss_pred hHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 388 EAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 388 ~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
++.+++|+|++|++|+++..|+++++.
T Consensus 227 e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 227 EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=331.30 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=178.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcCc
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISGY 891 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 891 (1412)
++++|++++++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67899998874 235899999999999999999999999999999999976432 12799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----hhhhcccCCC
Q 000576 892 PKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN----LLRQALVGLP 962 (1412)
Q Consensus 892 ~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~~ 962 (1412)
+... ...++.++|++|+..+++ .|++||+.+....+. .....+.++.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988888 999999988654431 122334455688899999997 444433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999987 57788999999995
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.28 Aligned_cols=214 Identities=26% Similarity=0.349 Sum_probs=172.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 238 (1412)
++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 456999999999999999999999999999999999999886 799999998875432 13569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++..... ..+. ... +.. ..+....++.+++.+||++..+..
T Consensus 91 ~~~~tv~~~l~~~~~~~~--~~~~---~~~------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~-- 142 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYK--PTWR---SLL------GRF---------------SEEDKERALSALERVGLADKAYQR-- 142 (243)
T ss_pred cccccHHHHHhhcccccc--cchh---hhh------ccc---------------cHHHHHHHHHHHHHcCcHhhhcCC--
Confidence 889999999987532110 0000 000 000 001122356678899997666544
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++
T Consensus 143 ---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 143 ---ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVG 218 (243)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEE
Confidence 4479999999999999999999999999999999999999999999998653 356777789999999999999999
Q ss_pred EeCCeEEEecChhhH
Q 000576 399 ISDGQIVYQGPREHV 413 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~ 413 (1412)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.07 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=172.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc--cceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP--QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~ 241 (1412)
+++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLD 88 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCccc
Confidence 4456999999999999999999999999999999999999887 7999999988754322 2579999999888889
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 89 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 131 (236)
T TIGR03864 89 LSVRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR--- 131 (236)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh---
Confidence 999999987643221100 0011234567888999877666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++.. +|++++|++
T Consensus 132 --~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~-~d~i~~l~~ 207 (236)
T TIGR03864 132 --ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEA-DDRLVVLHR 207 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhh-CCEEEEEeC
Confidence 69999999999999999999999999999999999999999999998653 35667778899888864 999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+.+++.+
T Consensus 208 G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 208 GRVLADGAAAELRG 221 (236)
T ss_pred CeEEEeCCHHHHHH
Confidence 99999999887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=375.50 Aligned_cols=225 Identities=24% Similarity=0.433 Sum_probs=187.6
Q ss_pred eeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHH
Q 000576 118 IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLL 197 (1412)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~ 197 (1412)
.+|+|+|+++.+. .+++.+||+|+|++|++|+.+|||||+||||||...
T Consensus 986 G~I~~~~V~F~YP-------------------------------sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~ 1034 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYP-------------------------------TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVIS 1034 (1228)
T ss_pred eEEEEeeeEeeCC-------------------------------CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHH
Confidence 4699999999763 235667999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHc
Q 000576 198 ALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274 (1412)
Q Consensus 198 ~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 274 (1412)
+|-..++|+ +|+|.+||+++++.+. |+.+|.|+|+|.+| +.|+||||.||.+. +
T Consensus 1035 LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~~~--v----------------- 1091 (1228)
T KOG0055|consen 1035 LLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGSEE--V----------------- 1091 (1228)
T ss_pred HHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccCCC--C-----------------
Confidence 999999997 7999999999988766 47899999987766 56999999998211 1
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCC
Q 000576 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354 (1412)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsg 354 (1412)
+.++.++|+ +...+.+++. +|++++||.||+++. +||||||||++||||+++||+||||||.||+
T Consensus 1092 ------s~~eIi~Aa-----k~ANaH~FI~---sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1092 ------SEEEIIEAA-----KLANAHNFIS---SLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred ------CHHHHHHHH-----HHhhhHHHHh---cCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 122223332 2233455554 599999999999988 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 000576 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 355 LD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
||+++.+.+.+.|++... ++|+|+ +.|.. .+.+.+|.|+|+++|+|+++|++++++.
T Consensus 1157 LDseSErvVQeALd~a~~--gRT~Iv-IAHRL-STIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAME--GRTTIV-IAHRL-STIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhhHHHHHHHHHHhhc--CCcEEE-Eecch-hhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999643 455555 55554 4567889999999999999999999975
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.23 Aligned_cols=198 Identities=30% Similarity=0.461 Sum_probs=167.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCCCCH
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGEMTV 244 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 244 (1412)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 799999998875421 23679999999888888999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccccc
Q 000576 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG 324 (1412)
Q Consensus 245 ~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~ 324 (1412)
+||+.+..+..+.. ..+....++++++.+||++..+..+ ..
T Consensus 96 ~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------------------------------GDELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 99998754322110 0011224567889999987666554 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeE
Q 000576 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404 (1412)
Q Consensus 325 LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~i 404 (1412)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999854 356777789999999999999999999999
Q ss_pred EEec
Q 000576 405 VYQG 408 (1412)
Q Consensus 405 v~~G 408 (1412)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=338.38 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=179.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.|+... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67999999885110 0113599999999999999999999999999999999997654 4799999998864
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCC
Q 000576 895 Q-------ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGV 964 (1412)
Q Consensus 895 ~-------~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 964 (1412)
. ..+++.+||++|++ .++ ..||.|++.|..... ..+..+.++.+.++++.++|. +..+.. .
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 13456799999986 344 469999999875432 223445566788999999995 344433 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|+|||++||+++ ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|++
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=340.21 Aligned_cols=219 Identities=24% Similarity=0.310 Sum_probs=179.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceec
Confidence 378999999885210 0113599999999999999999999999999999999997654 369999998653
Q ss_pred C---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 000576 894 K---------------------------QETFARISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEV 945 (1412)
Q Consensus 894 ~---------------------------~~~~~~~~~yv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~ 945 (1412)
. ....++.+|||+|++ ..+...||+|++.|..... ....++.+++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123456799999985 3344579999998865432 23444555678999
Q ss_pred HHHcCCc-hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000576 946 MELVELN-LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024 (1412)
Q Consensus 946 l~~l~l~-~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1024 (1412)
++.++|. +..+.. ...||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|
T Consensus 149 l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 555544 3479999999999999999999999999999999999999999999999877999999999
Q ss_pred CCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1025 QPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1025 qp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
++. .+.+.+|++++|++ |++++.|++
T Consensus 224 d~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 224 DLD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 986 57789999999985 899999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=331.40 Aligned_cols=207 Identities=21% Similarity=0.351 Sum_probs=173.0
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-----ccceEEEEcCCCCc
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-----PQRTAAYISQHDVH 238 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 238 (1412)
+++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL 88 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEeccccc
Confidence 3456999999999999999999999999999999999999887 799999999875421 13579999999888
Q ss_pred CCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 239 IGEMTVRETLAFSARC-QGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
++.+||+||+.++... .+.. . .+....++++++.+||++..|..+
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 134 (240)
T PRK09493 89 FPHLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYP 134 (240)
T ss_pred CCCCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcCh
Confidence 8899999999886321 1100 0 011123466888999986666544
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++ .+++++.++|+.+++.+++|+++
T Consensus 135 -----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~ 207 (240)
T PRK09493 135 -----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE--EGMTMVIVTHEIGFAEKVASRLI 207 (240)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999999854 35677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+.+++.
T Consensus 208 ~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 208 FIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=341.54 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=179.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 589999999885210 0123599999999999999999999999999999999997654 479999999775
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000576 894 KQ-------------------ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN 952 (1412)
Q Consensus 894 ~~-------------------~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~ 952 (1412)
.. ..+++.+|||+|++ .+++ .||+||+.|..... ..+.++..+.++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3554 59999998864321 223444455788999999996
Q ss_pred -hhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 000576 953 -LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031 (1412)
Q Consensus 953 -~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~ 1031 (1412)
+..+.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 444433 3579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhhccEeEEecCcEEEEEcCC
Q 000576 1032 EAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1032 ~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 899999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=375.29 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=107.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000576 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPGVNGLSTEQRKRLTIAVELV---ANPS 986 (1412)
Q Consensus 911 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~lSgGqrqRl~ia~~L~---~~p~ 986 (1412)
.+...||.|+|.++..-........++..+.+ ++++.++|.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999877542211111223334445 47888998765 4443 3479999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe-----cCcEEEEEcCC
Q 000576 987 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-----RGGQEIYVGPL 1052 (1412)
Q Consensus 987 illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~-----~gG~~~y~G~~ 1052 (1412)
+++|||||+|||+.+...+++.|+++++.|.|||+++|++. .+ +.+|++++|. .||+++..|++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999986 34 8999999995 36899999987
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=333.39 Aligned_cols=206 Identities=25% Similarity=0.380 Sum_probs=172.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-----------CccceEEEEc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-----------VPQRTAAYIS 233 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~ 233 (1412)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 346999999999999999999999999999999999999886 79999999887532 1135799999
Q ss_pred CCCCcCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 234 QHDVHIGEMTVRETLAFSARC-QGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
|++.+++.+||+||+.++... .+. . ..+....++.+++.+||++.
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~~l~~~gl~~~ 137 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVKGE-P---------------------------------KEEATARARELLAKVGLAGK 137 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhcCC-C---------------------------------HHHHHHHHHHHHHHcCCcch
Confidence 998888889999999875321 110 0 00112234567888999876
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.|+.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+.+++.++
T Consensus 138 ~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 138 ETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ--EKRTMVIVTHEMSFARDV 210 (250)
T ss_pred hhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHh
Confidence 66544 47999999999999999999999999999999999999999999999864 356677789999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000576 393 FDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
+|++++|++|++++.|+.+++.
T Consensus 211 ~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 211 ADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988763
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=329.59 Aligned_cols=212 Identities=23% Similarity=0.344 Sum_probs=177.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 488999998874 23599999999999999999999999999999999997654 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCchhhhcccCCCCCCCCC
Q 000576 894 KQE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~vg~~~~~~lS 968 (1412)
... ..++.++|++|+..+++.+||.||+.+..... ...+..+.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 23457999999998899999999998754221 1122234466777777 465544433 34799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999986 58889999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9986
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=324.80 Aligned_cols=209 Identities=24% Similarity=0.356 Sum_probs=177.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 35788887763 24699999999999999999999999999999999997653 4799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
... .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 2468999999988899999999987654332 11 234688899999987766543 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCC
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLG 1053 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~ 1053 (1412)
++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|++.
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 99999999999999999999999999999999999999877999999999987 57788999999985 8999999874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=303.86 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=181.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
|+.+|++|+.. .+++|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 67899999874 46799999999999999999999999999999999997654 3799999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
+ ....+..+..+|+..+....||+|-+.++..-... .-...+..+..++++...++.+++... ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 34566778999998887778999999887432111 111123445678899999998887654 34799999
Q ss_pred HHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 972 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 972 rqRl~ia~~L~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||.+||.|+. ++++||||||||.||...+..++++.|++++.|..|+++.||.+. ...++|||++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 346999999999999999999999999999999999999999985 5678999999995 89
Q ss_pred EEEEcCCC
Q 000576 1046 EIYVGPLG 1053 (1412)
Q Consensus 1046 ~~y~G~~~ 1053 (1412)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999984
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=331.52 Aligned_cols=206 Identities=21% Similarity=0.269 Sum_probs=175.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 589999999884 23599999999999999999999999999999999997654 479999999765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
. ..++.++|++|++.+++.+||+||+.+... . ..+..++++++.+++.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 245678999999988898999999987421 0 12345788999999987665543 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999987 57788999999985 799988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=326.24 Aligned_cols=209 Identities=28% Similarity=0.425 Sum_probs=169.3
Q ss_pred EeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcc
Q 000576 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE 896 (1412)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~ 896 (1412)
++|++++++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--
Confidence 567777663 24599999999999999999999999999999999997654 4799999998654
Q ss_pred cccceEEEeccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 897 TFARISGYCEQNDIHS--PQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 897 ~~~~~~~yv~Q~~~~~--~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
..++.++|++|++.+. +.+||+||+.+....... .....+..++.++++++.+++.+..+..+ ..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 2456789999997653 348999999875432110 00111233456889999999987666543 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999999999999999999999998877899999999987 57788999999974 4 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=339.84 Aligned_cols=229 Identities=20% Similarity=0.236 Sum_probs=184.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+++++...........++...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 589999998885321000000001235799999999999999999999999999999999997654 479999999886
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCC
Q 000576 894 KQE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGV 964 (1412)
Q Consensus 894 ~~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 964 (1412)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++.++.++++++.+++. +..+.. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 57889999999987644321 1234455667788999999994 344443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..||||||||++||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999986 57778999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 899999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=336.62 Aligned_cols=206 Identities=20% Similarity=0.300 Sum_probs=170.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------ccceEEEEcCCC-C
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------PQRTAAYISQHD-V 237 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 237 (1412)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 799999999875421 245799999985 2
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 316 (1412)
.+...||+||+.|+....+... .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3444699999998743221100 01122356788999996 455544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|++++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4579999999999999999999999999999999999999999999998653 4677888999999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=310.46 Aligned_cols=213 Identities=26% Similarity=0.407 Sum_probs=192.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.+++++|+++++ .+.+++|+||.++||+++|++|+|||||||++++|.|...+ .+|.|.++|.+.
T Consensus 2 ~L~ie~vtK~Fg-------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSFG-------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhccC-------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 478899988774 46799999999999999999999999999999999997664 489999999998
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
++.. +.++||.|.+.-++|.+||.|.|.|-|.|+. ++.++.++.++.+|+.+++.......+ +.||-|++|
T Consensus 67 ~~~~-~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQEI-KNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhhh-hhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 7643 4568999999999999999999999999874 456677778999999999988776664 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
++.+-.+++++|++++||||.|||||.+.+.+-+.+.++++.|.|||+++|+.+ .+-++||++++|++ |+.|.+|+.
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999999999999999999999999999987 68999999999996 799999987
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=330.26 Aligned_cols=221 Identities=24% Similarity=0.277 Sum_probs=179.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 478999998874 235999999999999999999999999999999999975431 3589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCC
Q 000576 891 YPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 891 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~l 967 (1412)
.++.. ..+++.++|++|++.+++.+||.||+.+....+.. .....+..+.++++++.+++.+..+.... .....|
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~L 147 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLD-APAGKL 147 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhc-CCcccC
Confidence 87642 23456789999999888999999999886543211 11223344568889999998542111111 113579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 968 SgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ .+.+.+|++++|++ |+++
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 224 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIV 224 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999864 899999999987 57788999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
..|+.
T Consensus 225 ~~g~~ 229 (250)
T PRK14247 225 EWGPT 229 (250)
T ss_pred EECCH
Confidence 99875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=336.58 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=181.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47899999988421 123599999999999999999999999999999999997654 479999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.+||++|++. .++..||+||+.|..... ....++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999973 677889999998865332 2334445567899999999987766553 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 35 67999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|++
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.66 Aligned_cols=212 Identities=28% Similarity=0.410 Sum_probs=177.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 57889988773 24699999999999999999999999999999999997654 4799999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 QE--TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~~--~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
.. ...+.++|++|++.+++.+|++|++.+.+..+ .....+..+.++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22356899999988888999999998765432 1223334456788999999987665543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999987 34 45999999985 89998887
Q ss_pred C
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=327.74 Aligned_cols=201 Identities=24% Similarity=0.339 Sum_probs=167.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 8999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++....+... .+.+..++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 888999999998643221100 011123566889999987666554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
..||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 469999999999999999999999999999999999999999999998643 35677778899888766 589999
Q ss_pred EeCCeEEEecCh
Q 000576 399 ISDGQIVYQGPR 410 (1412)
Q Consensus 399 L~~G~iv~~G~~ 410 (1412)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.59 Aligned_cols=215 Identities=21% Similarity=0.249 Sum_probs=176.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 589999998874 135899999999999999999999999999999999975432 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch----hhhcccCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL----LRQALVGL 961 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 961 (1412)
.++.. ...++.++|++|++.+++ +||+||+.+....... ......++.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 234567999999987774 8999999886543211 122333456788888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=378.05 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+ ++.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCcc-Ccc
Confidence 45999999999999999999999999999999999999997 8999999999987654 4789999997655 567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++.. . +.+...+++...+ ..+.+ -.++++.||.+|+++.
T Consensus 542 TI~eNi~~~~~-~-------------------------~~e~i~~al~~a~-----l~~~i---~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 542 SIFENIAGGAP-L-------------------------TLDEAWEAARMAG-----LAEDI---RAMPMGMHTVISEGGG 587 (686)
T ss_pred cHHHHHhcCCC-C-------------------------CHHHHHHHHHHcC-----cHHHH---HhccccccccccCCCC
Confidence 99999998632 1 0111111111100 01111 1367889999998764
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ + .|++.++|..+ ..+.+|+|++|++|
T Consensus 588 -~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~-~T~IiItHr~~-~i~~~D~Iivl~~G 660 (686)
T TIGR03797 588 -TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----K-VTRIVIAHRLS-TIRNADRIYVLDAG 660 (686)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----C-CeEEEEecChH-HHHcCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999874 2 45565777764 45679999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=324.61 Aligned_cols=211 Identities=24% Similarity=0.325 Sum_probs=172.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5789999887421 1124699999999999999999999999999999999997654 4799999998754
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCC
Q 000576 895 QE---T---FA-RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 895 ~~---~---~~-~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~l 967 (1412)
.. . ++ +.++|++|++.+++.+||+|++.+....+. ....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 568999999988889999999988654331 122333456788999999987666543 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 968 SgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998764 899999999986 34 55799999985 676
Q ss_pred E
Q 000576 1047 I 1047 (1412)
Q Consensus 1047 ~ 1047 (1412)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=325.56 Aligned_cols=199 Identities=29% Similarity=0.447 Sum_probs=167.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 241 (1412)
+++++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 3456999999999999 99999999999999999999999987 899999998875432 24679999999888888
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.+.....+.. + .+....++.+++.+||++..|+.++
T Consensus 87 ~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 129 (211)
T cd03264 87 FTVREFLDYIAWLKGIP-S---------------------------------KEVKARVDEVLELVNLGDRAKKKIG--- 129 (211)
T ss_pred CCHHHHHHHHHHHhCCC-H---------------------------------HHHHHHHHHHHHHCCCHHHHhCchh---
Confidence 99999998864332110 0 0011235668889999877666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|++++|++
T Consensus 130 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 130 --SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999853 3 6777789999999999999999999
Q ss_pred CeEEEec
Q 000576 402 GQIVYQG 408 (1412)
Q Consensus 402 G~iv~~G 408 (1412)
|++++.|
T Consensus 205 g~i~~~g 211 (211)
T cd03264 205 GKLVFEG 211 (211)
T ss_pred CEEEecC
Confidence 9998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=331.96 Aligned_cols=217 Identities=23% Similarity=0.275 Sum_probs=179.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 488999998873 24699999999999999999999999999999999997554 479999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCchhhhc
Q 000576 894 KQE---T-FARISGYCEQNDIHSPQVTVYESLLYSAWLRLS----------P--EVDSKTRKMFIEEVMELVELNLLRQA 957 (1412)
Q Consensus 894 ~~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~ 957 (1412)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+++.++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233479999999999999999999886431110 0 00111233467888999999776665
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhcc
Q 000576 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1036 (1412)
Q Consensus 958 ~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~ 1036 (1412)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 43 479999999999999999999999999999999999999999999999775 899999999987 57788999
Q ss_pred EeEEecCcEEEEEcCC
Q 000576 1037 LFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1037 v~ll~~gG~~~y~G~~ 1052 (1412)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 899999986
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=339.41 Aligned_cols=215 Identities=22% Similarity=0.248 Sum_probs=176.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCC-
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHD- 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 236 (1412)
...+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|+++..... ++.++||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 3569999999999999999999999999999999999998742237999999998865432 14699999986
Q ss_pred -CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 237 -VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 237 -~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
.+.+.+||.+++.+......... ..+....+..+++.+||++..++
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMS---------------------------------KAEAFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHcCCCChHHH
Confidence 67889999999987543221000 00112245667889999764332
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
. ++.++.|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+. .+++++.++|+...+.+++|+
T Consensus 155 -~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 155 -M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred -h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCE
Confidence 2 3567789999999999999999999999999999999999999999999998663 367788899999999999999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 000576 396 IILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~ 415 (1412)
|++|++|+|++.|+.+++.+
T Consensus 232 i~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 232 VLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=330.56 Aligned_cols=209 Identities=19% Similarity=0.337 Sum_probs=173.2
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++..... ++.++|++|++..
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 33456999999999999999999999999999999999999887 7999999988755332 3569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.+..+...... ..+....++.+++.+||++..+..
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-- 134 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDDLS---------------------------------AEQREDRANELMEEFHIEHLRDSM-- 134 (241)
T ss_pred cccCcHHHHHhhhhhcccccC---------------------------------HHHHHHHHHHHHHHcCCHHHhhcc--
Confidence 888999999987543211000 001122356688889997655544
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
.+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++++.. .+.+++.++|+..++.+++|++++
T Consensus 135 ---~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~ 209 (241)
T PRK10895 135 ---GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYI 209 (241)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEE
Confidence 447999999999999999999999999999999999999999999998754 356777788999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 210 VSQGHLIAHGTPTEIL 225 (241)
T ss_pred EeCCeEEeeCCHHHHh
Confidence 9999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=329.45 Aligned_cols=219 Identities=23% Similarity=0.265 Sum_probs=176.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46789988874 24699999999999999999999999999999999997311135799999998764
Q ss_pred cc---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCC
Q 000576 895 QE---TF-ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP----EVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~~---~~-~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 965 (1412)
.. .. +..++|++|++.+++.+|++|++.+........ .....+..+.++++++.+++. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 12 234899999999999999999998764322110 112223345678899999996 34443321 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-hccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~-fD~v~ll~~gG 1044 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 46666 799999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=343.54 Aligned_cols=208 Identities=27% Similarity=0.416 Sum_probs=169.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.++.++| ..|++..
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc-chHHHHH
Confidence 35999999999999999999999999999999999999998 7999999999877655 468999999 4788889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|+|+||..+.. +...++..++...-+ .+..+ .+.++..||.+|+.+.
T Consensus 427 Tlr~NL~lA~~-------------------------~AsDEel~~aL~qvg------L~~l~--~~~p~gl~t~lge~G~ 473 (573)
T COG4987 427 TLRDNLRLANP-------------------------DASDEELWAALQQVG------LEKLL--ESAPDGLNTWLGEGGR 473 (573)
T ss_pred HHHHHHhhcCC-------------------------CCCHHHHHHHHHHcC------HHHHH--HhChhhhhchhccCCC
Confidence 99999998642 222222211111000 01111 1245677899997665
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.||||||||++|||+|++++++++|||||.|||+.|..++++.+.+.+ ++++++.++|+...+ +.||+|++|++|
T Consensus 474 -~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~l-e~~drIivl~~G 548 (573)
T COG4987 474 -RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRGL-ERMDRIIVLDNG 548 (573)
T ss_pred -cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEecccccH-hhcCEEEEEECC
Confidence 699999999999999999999999999999999999999999998754 367777789988775 667999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|.+.++++
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=336.83 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=179.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++|+... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378999999885210 0123599999999999999999999999999999999997654 479999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCC
Q 000576 894 KQ-------ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPG 963 (1412)
Q Consensus 894 ~~-------~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~ 963 (1412)
.. ..+++.+|||+|++ .+++ .||.||+.|..... .....+.++.++++++.+||. +..+..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 13466799999986 3444 59999998865332 223444556788999999996 555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999975 4899999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|++
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=346.91 Aligned_cols=212 Identities=26% Similarity=0.420 Sum_probs=175.6
Q ss_pred CCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcC
Q 000576 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG 890 (1412)
Q Consensus 811 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 890 (1412)
.+..++|+||+++|. +++++|+++||+|++||++||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999985 23469999999999999999999999999999999998654 379999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-------hhhcccC
Q 000576 891 YPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-------LRQALVG 960 (1412)
Q Consensus 891 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg 960 (1412)
+++++ +.+|+.+||||||..++. -||.+|+.|+. ++.+.++ |-++.+..++.+ -.++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 567889999999777664 59999998863 3344332 344444444433 3455677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 961 ~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
..|. .|||||||||+||||++++|+|+++|||||.||+.|...+++.+++. ..|+|+|++.|+.+ +.+.||+|++|
T Consensus 483 erG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 6653 59999999999999999999999999999999999999999999994 35899999999964 68899999999
Q ss_pred ecCcEEEEEcCC
Q 000576 1041 KRGGQEIYVGPL 1052 (1412)
Q Consensus 1041 ~~gG~~~y~G~~ 1052 (1412)
++ |++...|+-
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 96 799999985
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.25 Aligned_cols=214 Identities=23% Similarity=0.298 Sum_probs=179.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++||++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46889998874 23599999999999999999999999999999999997654 4799999998753
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcc
Q 000576 895 Q----------------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958 (1412)
Q Consensus 895 ~----------------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 958 (1412)
. ...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123334455688899999998766654
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccE
Q 000576 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1037 (1412)
Q Consensus 959 vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v 1037 (1412)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3479999999999999999999999999999999999999999999998764 899999999987 577889999
Q ss_pred eEEecCcEEEEEcCC
Q 000576 1038 FLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1038 ~ll~~gG~~~y~G~~ 1052 (1412)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=324.04 Aligned_cols=205 Identities=25% Similarity=0.378 Sum_probs=168.5
Q ss_pred EeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc-
Q 000576 817 FDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ- 895 (1412)
Q Consensus 817 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~- 895 (1412)
++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccC
Confidence 5677776631 114699999999999999999999999999999999997654 47999999987542
Q ss_pred --ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 896 --ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 896 --~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
..+++.++|++|++. .++.+|++||+.+..... .......++.++++++.+++.+..+..+ ..||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHH
Confidence 234567899999874 466789999998765332 1223333456788999999976655543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...||++++|++|
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999877999999999986 577789999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.54 Aligned_cols=218 Identities=23% Similarity=0.288 Sum_probs=177.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999998773 235899999999999999999999999999999999975431 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ..+++.++|++|++.+++ +|++||+.+....+ ....++.++.++++++.+++......... ....
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLK-SPAL 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhc-CChh
Confidence 87532 134567999999988877 89999998865432 12333344567889999988432111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|++ |+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 230 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GE 230 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 231 i~~~~~~ 237 (258)
T PRK14268 231 LIEFGQT 237 (258)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.40 Aligned_cols=220 Identities=24% Similarity=0.264 Sum_probs=178.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478999998874 235999999999999999999999999999999999976542 2479999999
Q ss_pred ccCC--c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCCC
Q 000576 891 YPKK--Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPGV 964 (1412)
Q Consensus 891 ~~~~--~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~ 964 (1412)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++... .+.. . ...
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~ 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-N-DYP 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-c-cCh
Confidence 8764 1 23456799999999999999999999876543211 11223334567888999987532 1111 1 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 224 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-G 224 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 699999999987 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 225 ~i~~~~~~ 232 (253)
T PRK14267 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 99999885
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=336.01 Aligned_cols=219 Identities=25% Similarity=0.311 Sum_probs=179.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++... ...+.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 478899998884210 0124599999999999999999999999999999999997654 479999999875
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCC
Q 000576 894 KQ-------ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGV 964 (1412)
Q Consensus 894 ~~-------~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 964 (1412)
.. ...++.++|++|++. .+..+||.|++.|..... ....++..++++++++.+++. +..+..+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457899999863 333589999998765432 123444556788999999996 5555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999999777999999999986 57889999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 99999985
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.23 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=179.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 378899998874 23599999999999999999999999999999999997654 479999999865
Q ss_pred C---------cccccceEEEeccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 894 K---------QETFARISGYCEQNDIHSPQVTVYESLLYS-AWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 894 ~---------~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
. ....++.++|++|++.+++.+||.||+.+. .... .....+....++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 012345789999999999999999999653 2221 1223333456788999999987666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999877999999999987 56778999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 899999875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=334.37 Aligned_cols=213 Identities=22% Similarity=0.329 Sum_probs=179.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 57889998873 123599999999999999999999999999999999997654 4799999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 895 Q----ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~----~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. ...++.++|++|++. .++..|+.||+.+..... .....+.++.++++++.+++.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999875 366789999998765332 1234444566889999999987766543 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 45 67999999985 899999
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 986
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=337.69 Aligned_cols=213 Identities=25% Similarity=0.432 Sum_probs=180.0
Q ss_pred CCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcC
Q 000576 811 EPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISG 890 (1412)
Q Consensus 811 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 890 (1412)
++..+..+|+++.|+. ++++++|+|++++||+++||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4556777799999852 23799999999999999999999999999999999998764 489999999
Q ss_pred ccCC---cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhh------cccCC
Q 000576 891 YPKK---QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQ------ALVGL 961 (1412)
Q Consensus 891 ~~~~---~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~------~~vg~ 961 (1412)
.+.. ...+++.++||+|++.+++. |++||+.++. .+.+ ++.+.++++..++.+..+ +.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 46788999999999988775 9999998752 1222 234678888888876544 44443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
++++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999986 599999999975 456789999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 899999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=362.32 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 000576 914 QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPGVNGLSTEQRKRLTIAVELVANP---SIIF 989 (1412)
Q Consensus 914 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p---~ill 989 (1412)
.+||.|++.|...+.. .....+.++.++|... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3789999888654321 1124678889998753 3332 3479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe-----cCcEEEEEcCC
Q 000576 990 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-----RGGQEIYVGPL 1052 (1412)
Q Consensus 990 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~-----~gG~~~y~G~~ 1052 (1412)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ..+.+|+++.|. +||++++.|++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346899999994 47999999986
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=316.62 Aligned_cols=190 Identities=58% Similarity=0.959 Sum_probs=162.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.|+.+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999888521 012469999999999999999999999999999999999643223589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
. ...++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 344567899999998899999999998643110 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998744678899999998658999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.29 Aligned_cols=196 Identities=30% Similarity=0.564 Sum_probs=163.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCcc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYP 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 892 (1412)
.++|+|++|.|+.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999999643 13457999999999999999999999999999999999976522 458999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 893 KKQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 893 ~~~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
... ...++.++|++|++.+++.+||+|++.+....+ .+. ....||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 234567999999999999999999998754211 111 13479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777776654468889999999995 888876
Q ss_pred c
Q 000576 1050 G 1050 (1412)
Q Consensus 1050 G 1050 (1412)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=334.43 Aligned_cols=215 Identities=25% Similarity=0.308 Sum_probs=181.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 4889999988741 123599999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.+||++|++. .++..||.||+.+..... ....++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865432 1233444567899999999988776654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++ +.+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999987 34 46999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9986
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.25 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=180.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++. +..+|+|||+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 3788999988741 23489999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.++|++|++. .+...||.|++.+..... ....+..++.++++++.+++.+..+..+ +.|||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSG 140 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCH
Confidence 43 234567899999863 344679999998765322 2334444556889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 141 Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~ 218 (277)
T PRK13652 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVA 218 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999987 57789999999985 79999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 219 ~g~~ 222 (277)
T PRK13652 219 YGTV 222 (277)
T ss_pred ECCH
Confidence 9986
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.14 Aligned_cols=213 Identities=26% Similarity=0.366 Sum_probs=178.6
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 67899998874 24599999999999999999999999999999999997553 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
. ...++.++|++|++.+++.+||+|++.+...... ...+..++.++++++.+++.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2234578999999888888999999987542211 112233456788999999987666553 4799999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 972 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 972 rqRl~ia~~L~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. +.|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57779999999985 7
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 99998875
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=317.57 Aligned_cols=217 Identities=23% Similarity=0.239 Sum_probs=157.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 243 (1412)
..+.++.|.|+.|-.|+..+++||||-||||||+.|+.+--. ..+.-.+-||.|+ ....+-|
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-----------------IPpnIDvLlCEQE-vvad~t~ 336 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-----------------IPPNIDVLLCEQE-VVADSTS 336 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-----------------CCCCCceEeeeee-eeecCcH
Confidence 445688999999999999999999999999999999876311 0011246678885 4444556
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCCh-------HHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDL-------DVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.-+++.-+ ...|..++.+..+++.... .+|. +.+.+..+.....++.+...||..||.+...
T Consensus 337 Ai~tvl~a-----D~kRl~lLeee~~L~~q~e---~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM--- 405 (807)
T KOG0066|consen 337 AIDTVLKA-----DKKRLALLEEEAKLMSQIE---EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM--- 405 (807)
T ss_pred HHHHHHHh-----hHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH---
Confidence 66666533 1245556666555554432 2332 1223333444555666778899999998543
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
-++.....|||-|-||++||||...|-+|.|||||++||-.....+-+.|+.+ +.|+++++|+.....+.|.+|
T Consensus 406 -Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW-----kKTLLIVSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 406 -QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW-----KKTLLIVSHDQGFLDSVCTDI 479 (807)
T ss_pred -hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh-----hheeEEEecccchHHHHHHHH
Confidence 35566679999999999999999999999999999999999988887888776 345555889999999999999
Q ss_pred EEEeCCeE-EEecChhhHHH
Q 000576 397 ILISDGQI-VYQGPREHVLE 415 (1412)
Q Consensus 397 ivL~~G~i-v~~G~~~~~~~ 415 (1412)
|-|++-++ .|.|.+.-...
T Consensus 480 IHLD~qkLhyYrGNY~~FKK 499 (807)
T KOG0066|consen 480 IHLDNQKLHYYRGNYTLFKK 499 (807)
T ss_pred hhhhhhhhhhhcchHHHHHH
Confidence 99998887 45677654433
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=335.42 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=172.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCC--c---CccceEEEEcCCCC-cC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE--F---VPQRTAAYISQHDV-HI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 239 (1412)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 45999999999999999999999999999999999999987 7999999998741 1 12357999999853 34
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
...||+||+.++....+.. ..+....++++++.+||.+..|+.+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-- 139 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------------------------------EDEVRKRVDNALKRTGIEHLKDKPT-- 139 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhhhhCCc--
Confidence 5689999998864322110 0011224567889999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|++++|
T Consensus 140 ---~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 140 ---HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred eCCeEEEecChhhHHH
Q 000576 400 SDGQIVYQGPREHVLE 415 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~~ 415 (1412)
++|++++.|+++++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=340.67 Aligned_cols=209 Identities=23% Similarity=0.277 Sum_probs=174.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCC--
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHD-- 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 236 (1412)
...+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999886 7999999998865432 35799999986
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-ccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADT 315 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 315 (1412)
.+++.+||.||+.+..+....+ .. ..+....++.+++.+||+ +..+
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~- 156 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLIN- 156 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhc-
Confidence 5788999999999865322100 00 001123456788999995 3334
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
+.+..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+
T Consensus 157 ----~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 157 ----RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 445579999999999999999999999999999999999999999999998653 367788899999999999999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000576 396 IILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~ 414 (1412)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.41 Aligned_cols=215 Identities=27% Similarity=0.327 Sum_probs=178.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 67899998774 23699999999999999999999999999999999997554 4799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 895 QE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS--P---EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~--~---~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..++.++++++.+++.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234699999999999999999999876432110 0 0112233456889999999987665543 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 799999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 9998875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.95 Aligned_cols=232 Identities=24% Similarity=0.322 Sum_probs=181.7
Q ss_pred EEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000576 121 RFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALA 200 (1412)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 200 (1412)
+.+|++.++.... ..+++.+..++.+ .++++.+++|+|+|++|++|++++|+|||||||||||++|+
T Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 2 EVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred ceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4577777765432 1233333333221 24556778999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEEECCccCCCc--CccceEEEEc-CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCC
Q 000576 201 GKLDSSLRLYGRVTYNGHNMDEF--VPQRTAAYIS-QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277 (1412)
Q Consensus 201 G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~ 277 (1412)
|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 69 Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~------------------ 127 (236)
T cd03267 69 GLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP------------------ 127 (236)
T ss_pred CCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH------------------
Confidence 999887 79999999875332 1235799997 54667788999999988654322100
Q ss_pred CCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 000576 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDS 357 (1412)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~ 357 (1412)
++....++.+++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||+
T Consensus 128 ----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 128 ----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred ----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0111234567888999888877664 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEec
Q 000576 358 STTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408 (1412)
Q Consensus 358 ~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G 408 (1412)
.++..+.+.|+++++. ++.+|+.++|+.+++.+++|++++|.+|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998653 3566777899999999999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=326.71 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=168.8
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 34457999999999999999999999999999999999999987 7999999988754332 3569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhC-CCccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILG-LDVCADTMV 317 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~v 317 (1412)
++.+||+||+.++.+..+.. .....+.+++.++ +++..|+.
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~- 128 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRR- 128 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCC-
Confidence 88899999998865322100 0011234455554 44434443
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++++.++|+.+++.+++|+++
T Consensus 129 ----~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 129 ----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999997652 35677778999999999999999
Q ss_pred EEeCCeEEEecChhhH
Q 000576 398 LISDGQIVYQGPREHV 413 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~ 413 (1412)
+|++|++++.|+.+++
T Consensus 204 ~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 204 VMERGRVVASGAGDEL 219 (230)
T ss_pred EEECCEEEEECCHHHc
Confidence 9999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=329.94 Aligned_cols=203 Identities=25% Similarity=0.363 Sum_probs=169.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 243 (1412)
+++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+|
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRN 86 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCc
Confidence 3456999999999999999999999999999999999999887 79999999887542 346899999988888899
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.++.+..+... .+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (255)
T PRK11248 87 VQDNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----W 127 (255)
T ss_pred HHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----h
Confidence 9999988643221100 001123567889999987666544 4
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe--C
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS--D 401 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~--~ 401 (1412)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|+|++|+ +
T Consensus 128 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~ 206 (255)
T PRK11248 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGP 206 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 79999999999999999999999999999999999999999999997543 35667778999999999999999998 5
Q ss_pred CeEEEecChh
Q 000576 402 GQIVYQGPRE 411 (1412)
Q Consensus 402 G~iv~~G~~~ 411 (1412)
|+++..++.+
T Consensus 207 G~i~~~~~~~ 216 (255)
T PRK11248 207 GRVVERLPLN 216 (255)
T ss_pred cEEEEEecCC
Confidence 9999987653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=328.07 Aligned_cols=221 Identities=24% Similarity=0.306 Sum_probs=177.5
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-CeEEEEEEE
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--T-GYVTGNITI 888 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i 888 (1412)
|..++++|++++++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34689999999874 1359999999999999999999999999999999999632 1 124799999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 889 SGYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 889 ~g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
+|.++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-S 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-C
Confidence 9987642 133567999999988887 5999999887543321 12223345678889999885422111111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 799999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=331.11 Aligned_cols=220 Identities=25% Similarity=0.342 Sum_probs=181.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCcc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYP 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 892 (1412)
.++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 588999998874 246999999999999999999999999999999999976543 136999999987
Q ss_pred CCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCchhhhccc
Q 000576 893 KKQ--------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-----PEVDSKTRKMFIEEVMELVELNLLRQALV 959 (1412)
Q Consensus 893 ~~~--------~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~v 959 (1412)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+..++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875321100 01112234456889999999987666543
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEe
Q 000576 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1038 (1412)
Q Consensus 960 g~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ 1038 (1412)
..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++.++ |+|||+++|++. .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999754 899999999986 4778899999
Q ss_pred EEecCcEEEEEcCCC
Q 000576 1039 LLKRGGQEIYVGPLG 1053 (1412)
Q Consensus 1039 ll~~gG~~~y~G~~~ 1053 (1412)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7999998863
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.04 Aligned_cols=231 Identities=24% Similarity=0.340 Sum_probs=187.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC-C-CCCceeEEEECCccCCCcCc-------cceEEEEcCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-S-SLRLYGRVTYNGHNMDEFVP-------QRTAAYISQH 235 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 235 (1412)
...+++||||++++||+++|+|.|||||||+.++|+|+++ + ....+|+|.++|.++..... .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33467999999998755432 2579999998
Q ss_pred C--CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 236 D--VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 236 d--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
+ .+-|.+||.+.+.-..+...... ..++....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 67888999988875543221000 0112334566789999998642
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
.+-+.++..|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.+ ..+++++.++|+..-+.++|
T Consensus 145 --~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 --RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred --HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 234677889999999999999999999999999999999999999999999999987 46888888999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000576 394 DDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVT 438 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 438 (1412)
|||+||..|+||+.|+.+++. ..|.+.-....+..+.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLP 258 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCc
Confidence 999999999999999999884 3455544444444443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.75 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=172.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ .+. .|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 35788888773 112 289999999999999999999999999999997654 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++.+|++||+.+....+. .. ....++.++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 31 234679999999999999999999987543211 11 1233456889999999987766653 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999999875 4899999999986 57788999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.47 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=176.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCC-CcCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHD-VHIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 241 (1412)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 45999999999999999999999999999999999999987 8999999998865332 35799999986 36778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
.||+||+.++.+..+... .+....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc---
Confidence 899999998653321100 0112245678899999877766554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++.. .+++|++++|+.+++. .+|++++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 3677777889888886 5999999999
Q ss_pred CeEEEecChhhHHH---HHHhcCCCCC
Q 000576 402 GQIVYQGPREHVLE---FFEFMGFKCP 425 (1412)
Q Consensus 402 G~iv~~G~~~~~~~---~f~~~G~~~p 425 (1412)
|++++.|+.+++.. .+...++.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 2334444443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=344.28 Aligned_cols=195 Identities=23% Similarity=0.373 Sum_probs=169.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------CccceEEEEcCCCCcCCCCC
Q 000576 171 GVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------VPQRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 171 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 243 (1412)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 79999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999999863200 0113456889999987766554 4
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++.+++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999998653 35677779999999999999999999999
Q ss_pred EEEecChhhHH
Q 000576 404 IVYQGPREHVL 414 (1412)
Q Consensus 404 iv~~G~~~~~~ 414 (1412)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=323.13 Aligned_cols=195 Identities=24% Similarity=0.381 Sum_probs=164.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCcC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVHI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 239 (1412)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 799999999875432 235799999998889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999999875432110 0 011123466888899987666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .++++++++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK--AGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999854 3567777899999999999999999
Q ss_pred eCCeE
Q 000576 400 SDGQI 404 (1412)
Q Consensus 400 ~~G~i 404 (1412)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=326.91 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=176.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCC---CCCeEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK---TTGYVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 578999998873 245999999999999999999999999999999999952 2212379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+..+..... ...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988776 5999999876543311 11223345678899999986422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4799999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.52 Aligned_cols=217 Identities=20% Similarity=0.261 Sum_probs=178.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|++|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478999999874 235999999999999999999999999999999999975432 2489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch----hhhcccCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL----LRQALVGL 961 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 961 (1412)
.++.. ...++.++|++|+..+++.+||+||+.+....+. .......++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999987654331 1123334456788899998842 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 357999999999999999999999999999999999999999999999864 689999999986 5778999999997
Q ss_pred c-----CcEEEEEcCC
Q 000576 1042 R-----GGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~-----gG~~~y~G~~ 1052 (1412)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4899999885
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.63 Aligned_cols=205 Identities=21% Similarity=0.330 Sum_probs=170.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------CccceEEEEcCCCC-
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------VPQRTAAYISQHDV- 237 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 237 (1412)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999987 89999999987532 11357999999852
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 316 (1412)
.+..+||+||+.|+....+.. + .+....++.+++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS-E---------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 444689999999864322110 0 01122356788999996 445544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||++
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 47999999999999999999999999999999999999999999999853 3677788999999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=327.56 Aligned_cols=204 Identities=25% Similarity=0.411 Sum_probs=166.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCcCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVHIG 240 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 240 (1412)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..++
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 346999999999999999999999999999999999999887 7999999998765432 356999999988888
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHh-CCCccccccccC
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGD 319 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~ 319 (1412)
.+||+||+.++..... . + + ....++.+++.+ ++.+..++.
T Consensus 94 ~~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~--- 134 (237)
T PRK11614 94 RMTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR--- 134 (237)
T ss_pred CCcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc---
Confidence 8999999988532110 0 0 0 001123345555 354433433
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+.+++.+++|++++|
T Consensus 135 --~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 135 --AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHhhCCEEEEE
Confidence 447999999999999999999999999999999999999999999999864 3566777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 211 ENGHVVLEDTGDALL 225 (237)
T ss_pred eCCEEEeeCCHHHHh
Confidence 999999999988774
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.58 Aligned_cols=208 Identities=24% Similarity=0.387 Sum_probs=170.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
+..+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 346999999999999999999999999999999999999863 11269999999987542 12357999999987
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC----ccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD----VCA 313 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~ 313 (1412)
+++ +||+||+.++.+..+.... .+....++.+++.+||. +..
T Consensus 93 ~~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 138 (247)
T TIGR00972 93 PFP-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRL 138 (247)
T ss_pred cCC-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHh
Confidence 777 9999999986543210000 01112346678889997 444
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
++. ++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++
T Consensus 139 ~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~ 210 (247)
T TIGR00972 139 HDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARIS 210 (247)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhC
Confidence 443 457999999999999999999999999999999999999999999999864 3 56777899999999999
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000576 394 DDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~ 414 (1412)
|++++|++|+++++|+++++.
T Consensus 211 d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 211 DRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.37 Aligned_cols=216 Identities=27% Similarity=0.366 Sum_probs=179.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 68899998874 24699999999999999999999999999999999997543 4799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWL--RLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~l--r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
. ...++.++|++|+..+++.+|+.|++.+.... ..... .....++.++++++.+++.+..+... ..|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR-LSAEDNARVNQAMEQTRINHLADRRL-----TDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccC-CCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCH
Confidence 2 23345689999998888889999999875211 10011 11223456788999999987666543 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 9999999999999999999999999999999999999999998777899999999987 67889999999985 799999
Q ss_pred cCCC
Q 000576 1050 GPLG 1053 (1412)
Q Consensus 1050 G~~~ 1053 (1412)
|+..
T Consensus 220 ~~~~ 223 (255)
T PRK11231 220 GTPE 223 (255)
T ss_pred cCHH
Confidence 8863
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.54 Aligned_cols=217 Identities=28% Similarity=0.381 Sum_probs=179.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 589999998873 24699999999999999999999999999999999997553 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456789999998888899999999875321100 00111223456788999999987666554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 57789999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 9876
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=322.56 Aligned_cols=195 Identities=28% Similarity=0.416 Sum_probs=163.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 238 (1412)
++.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 346999999999999999999999999999999999999886 799999999876532 13579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++....+... ...+..++.+++.+||++..++.+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 135 (214)
T TIGR02673 91 LPDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP- 135 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 888999999998754321100 011123566888999986655554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.+++|++++
T Consensus 136 ----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 136 ----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK--RGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 46999999999999999999999999999999999999999999999754 356777789999999999999999
Q ss_pred EeCCe
Q 000576 399 ISDGQ 403 (1412)
Q Consensus 399 L~~G~ 403 (1412)
|++|+
T Consensus 210 l~~G~ 214 (214)
T TIGR02673 210 LDDGR 214 (214)
T ss_pred ecCCC
Confidence 99985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=376.44 Aligned_cols=208 Identities=30% Similarity=0.492 Sum_probs=169.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+ ++.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-f~~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-FYG 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhh-hhh
Confidence 35899999999999999999999999999999999999997 7999999999887654 4789999997654 457
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++.. +.+.+...+++...+ ..+.+. .+++..||.+|+++.
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~-----l~~~i~---~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG-----VTEFVR---RHPDGLDMQIGERGR 600 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC-----hHHHHH---hCcccccceecCCCC
Confidence 99999998631 111122222221111 112221 378889999998765
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+||||||||++|||||+.+|++++||||||+||+.++..|.+.|+++.+ +.|++.++|..+ ..+.+|+|++|++|
T Consensus 601 -~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~iiItHrl~-~~~~~D~iivl~~G 675 (694)
T TIGR03375 601 -SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA---GKTLVLVTHRTS-LLDLVDRIIVMDNG 675 (694)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHH-HHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999998642 455565777765 55789999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=333.58 Aligned_cols=235 Identities=29% Similarity=0.441 Sum_probs=191.7
Q ss_pred hcCCCCCceeEEEeeeeEEEEEecCCCCCCCchhhHHHHHHHHHhhhhhcccccccceeeeceeeEEeCCeEEEEEcCCC
Q 000576 110 RVGISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPA 189 (1412)
Q Consensus 110 ~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 189 (1412)
+..+|-|+..+..|++++- . ...++++|+|+||.+.+|+-++|+||||
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~---P-----------------------------Pg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 325 RMPLPAPQGALSVERLTAA---P-----------------------------PGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred CCCCCCCCceeeEeeeeec---C-----------------------------CCCCCcceecceeEecCCceEEEECCCC
Confidence 4556677788999988882 1 1234679999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc---ceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHH
Q 000576 190 SGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266 (1412)
Q Consensus 190 sGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~ 266 (1412)
||||||.++|.|...|. +|.|.+||-+++..++. +.+||.||+ .-++..||.|||. |+.
T Consensus 373 SGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-VeLF~GTIaeNIa---Rf~----------- 434 (580)
T COG4618 373 SGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VELFDGTIAENIA---RFG----------- 434 (580)
T ss_pred ccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ceecCCcHHHHHH---hcc-----------
Confidence 99999999999999987 89999999999877654 789999996 5555679999995 221
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEe
Q 000576 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346 (1412)
Q Consensus 267 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vl 346 (1412)
++.|.+...+|+.. ..++|.++ .|++++||.||+.+. +||||||||+++||||+++|.++
T Consensus 435 -----------~~~d~~kIieAA~l-----AgvHelIl---~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 435 -----------EEADPEKVIEAARL-----AGVHELIL---RLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred -----------ccCCHHHHHHHHHH-----cChHHHHH---hCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCcEE
Confidence 23344444444432 23445554 499999999998776 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecChhhHHHHH
Q 000576 347 FMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFF 417 (1412)
Q Consensus 347 lLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~~~f 417 (1412)
+||||-|+||+.....+.+.+.+... . |.++++++| .+.+...+|+|++|++|++-.+|+++|++...
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~-r-G~~vvviaH-RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA-R-GGTVVVIAH-RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH-c-CCEEEEEec-CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999998743 3 444444555 46788999999999999999999999998743
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=331.26 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=177.3
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 67899998874 23589999999999999999999999999999999997654 4799999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 Q-----ETFARISGYCEQNDIH-SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~-----~~~~~~~~yv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ...++.++|++|++.. ....|+.|++.+....+ .....+.++.++++++.+++.+..+..+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234678999998753 44568999998764332 1233344456788999999987666543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998877999999999986 57788999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9975
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.99 Aligned_cols=195 Identities=22% Similarity=0.296 Sum_probs=165.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHH
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 245 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 245 (1412)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 45999999999999999999999999999999999999887 7999999976543 245799999998888889999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccC
Q 000576 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325 (1412)
Q Consensus 246 e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~L 325 (1412)
||+.++... . ....++.+++.+||++..+..+ ..|
T Consensus 100 enl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~L 134 (257)
T PRK11247 100 DNVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AAL 134 (257)
T ss_pred HHHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhC
Confidence 999874210 0 0012355788899987665544 479
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEE
Q 000576 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405 (1412)
Q Consensus 326 SGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv 405 (1412)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|++++|+..++.+++|+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998653 3566777899999999999999999999999
Q ss_pred EecChh
Q 000576 406 YQGPRE 411 (1412)
Q Consensus 406 ~~G~~~ 411 (1412)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.47 Aligned_cols=209 Identities=31% Similarity=0.480 Sum_probs=173.0
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHI 239 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 239 (1412)
++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLS 88 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCC
Confidence 33456999999999999999999999999999999999999886 7999999987754322 35699999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++....+... ++....++.+++.+||++..++.++
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 133 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDYP- 133 (258)
T ss_pred CCCCHHHHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc-
Confidence 88999999988642211000 0011234668889999876666554
Q ss_pred cccccCChhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 320 EMIRGISGGQRKRVTTGEMLV------GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~------~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
.|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+..++.+++
T Consensus 134 ----~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~ 208 (258)
T PRK13548 134 ----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYA 208 (258)
T ss_pred ----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhc
Confidence 69999999999999999 599999999999999999999999999998633 3567777899999999999
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000576 394 DDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~ 414 (1412)
|+|++|++|++++.|+++++.
T Consensus 209 d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 209 DRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999987764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=328.06 Aligned_cols=224 Identities=19% Similarity=0.252 Sum_probs=179.4
Q ss_pred CCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-CeEEEE
Q 000576 809 PFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--T-GYVTGN 885 (1412)
Q Consensus 809 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~ 885 (1412)
|.++..++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+
T Consensus 8 ~~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred cCCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 33445689999999874 1359999999999999999999999999999999999753 1 135799
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccC
Q 000576 886 ITISGYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960 (1412)
Q Consensus 886 i~i~g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg 960 (1412)
|.++|.++.. ..+++.++|++|+..+++ .|++||+.+...... ..+.++.++.++++++.+++.+.......
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999987632 234567999999988777 899999987653321 12333444568889999988431111111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 961 ~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
. ....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|++++|
T Consensus 152 ~-~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 152 Q-SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred c-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 1 135799999999999999999999999999999999999999999999986 4789999999986 577889999999
Q ss_pred ecCcEEEEEcCC
Q 000576 1041 KRGGQEIYVGPL 1052 (1412)
Q Consensus 1041 ~~gG~~~y~G~~ 1052 (1412)
++ |+++..|+.
T Consensus 229 ~~-G~i~~~g~~ 239 (260)
T PRK10744 229 YL-GELIEFGNT 239 (260)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=359.19 Aligned_cols=209 Identities=28% Similarity=0.376 Sum_probs=177.0
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+|+|+. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 36999999999852 224699999999999999999999999999999999997664 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.+|||+|++.+++ -|++||+.+.. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 457788999999998876 49999997642 1 22 23467788888877543 4556544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3679999999999999999999999999999999999999999999886 589999999985 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=327.88 Aligned_cols=224 Identities=23% Similarity=0.253 Sum_probs=181.2
Q ss_pred CCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---CeEEEE
Q 000576 809 PFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT---GYVTGN 885 (1412)
Q Consensus 809 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~ 885 (1412)
|..+..++++|++++++ .+.+|+|+|+++++||++||+|+||||||||+++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 44455799999999874 24699999999999999999999999999999999997542 135899
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccC
Q 000576 886 ITISGYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960 (1412)
Q Consensus 886 i~i~g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg 960 (1412)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... ........++.++++++.+++.+..+...+
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987642 123567899999988777 59999998764322 111233445567888999988542222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 961 ~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
. ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.||++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 245799999999999999999999999999999999999999999999986 4799999999987 578899999999
Q ss_pred ecCcEEEEEcCC
Q 000576 1041 KRGGQEIYVGPL 1052 (1412)
Q Consensus 1041 ~~gG~~~y~G~~ 1052 (1412)
++ |++++.|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999986
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.29 Aligned_cols=215 Identities=20% Similarity=0.325 Sum_probs=174.2
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCc
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVH 238 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 238 (1412)
++++++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTV 88 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEecccccc
Confidence 33456999999999999999999999999999999999999887 7999999988754332 2469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++..... ..+... .. .. ..+....++++++.+|+++..++.++
T Consensus 89 ~~~~tv~~nl~~~~~~~~--~~~~~~------------~~-~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (242)
T TIGR03411 89 FENLTVFENLELALPRDK--SVFASL------------FF-RL-----------SAEEKDRIEEVLETIGLADEADRLAG 142 (242)
T ss_pred CCCCCHHHHHHHhhhccc--cccccc------------cc-cc-----------HHHHHHHHHHHHHHcCCchhhcCChh
Confidence 999999999998643110 000000 00 00 00112345678899999876665554
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ +.+|+.++|+.+++.++||++++
T Consensus 143 -----~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~ 214 (242)
T TIGR03411 143 -----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTV 214 (242)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999854 35777789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++++|+.+++.
T Consensus 215 l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 215 LHQGSVLAEGSLDQVQ 230 (242)
T ss_pred EECCeEEeeCCHHHHh
Confidence 9999999999987763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.49 Aligned_cols=170 Identities=24% Similarity=0.321 Sum_probs=134.1
Q ss_pred eEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHH
Q 000576 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSA 925 (1412)
Q Consensus 846 vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a 925 (1412)
=.+.|+.||+++++||||-||||+.++|+|...+. +|+ .. .-.++|-||--.-..+.||++-|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 36788999999999999999999999999966543 454 11 123678888655557889998775332
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 000576 926 WLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005 (1412)
Q Consensus 926 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i 1005 (1412)
.-+... .....++.+-|.|..+.+..+ .+|||||.|||+||.+|.++.++.+||||++.||++.+..+
T Consensus 427 ~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 221111 123467888899998888765 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 1006 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 1006 ~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
-++||+... +++|.+++-||... +--..||+++..
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999875 48899999999763 444578887775
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=335.70 Aligned_cols=211 Identities=19% Similarity=0.282 Sum_probs=170.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
.++|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++..
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 01379999999998532 224679999998765
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
+ +.||+||+.|+....+... . +..+..++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-R--------------------------------KILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-H--------------------------------HHHHHHHHHHHHHcCCcchhhhhhh
Confidence 5 6899999998753321100 0 0011123456777777655556665
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+ ....|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ +.++++++|....+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4457999999999999999999999999999999999999999999998753 46777799999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999984
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=315.73 Aligned_cols=183 Identities=44% Similarity=0.789 Sum_probs=154.5
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--ccceEEEEcCCCCcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--PQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 241 (1412)
+++.+|+|+|+++++|++++|+||||||||||+++|+|.++|....+|+|.++|+++.... .++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 3457999999999999999999999999999999999999831113899999999876532 24679999999889999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.++.+.. .++.
T Consensus 98 ~tv~~~l~~~~~~~--------------------------------------------------------------~~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK--------------------------------------------------------------GNEF 115 (202)
T ss_pred CcHHHHHhhhhhhc--------------------------------------------------------------cccc
Confidence 99999998753210 1123
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.+++++.||+.+++.+++|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 34699999999999999999999999999999999999999999999986643456677677777899999999999999
Q ss_pred CeEEEec
Q 000576 402 GQIVYQG 408 (1412)
Q Consensus 402 G~iv~~G 408 (1412)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=330.15 Aligned_cols=219 Identities=22% Similarity=0.296 Sum_probs=181.2
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 3688999999884 24699999999999999999999999999999999997654 47999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
+.. ...++.++|++|++.+++..|++|++.+...-..+ .....+..++.++++++.+++.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 542 23345689999999988899999999764211100 0001123345678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 58889999999985 8999
Q ss_pred EEcCCC
Q 000576 1048 YVGPLG 1053 (1412)
Q Consensus 1048 y~G~~~ 1053 (1412)
+.|+..
T Consensus 224 ~~g~~~ 229 (265)
T PRK10253 224 AQGAPK 229 (265)
T ss_pred EeCCHH
Confidence 999863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=342.51 Aligned_cols=201 Identities=22% Similarity=0.298 Sum_probs=173.4
Q ss_pred eeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCCCC
Q 000576 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQE---T----FARISGYCEQNDIHS 912 (1412)
Q Consensus 840 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~yv~Q~~~~~ 912 (1412)
..+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+||++|+..++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4589999999999999999999999999999999997654 479999999886431 1 134689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000576 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992 (1412)
Q Consensus 913 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDE 992 (1412)
+.+||+||+.|....+. ...++.++.++++++.++|.+..+..+ ..||||||||++|||+|+.+|++|+|||
T Consensus 119 ~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999998765432 223444567889999999988776653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 993 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 993 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+++|++++|++ |+++..|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999875 4899999999987 57789999999985 899999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=293.76 Aligned_cols=201 Identities=26% Similarity=0.388 Sum_probs=175.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHH
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 245 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 245 (1412)
..+|+|+|+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++-. ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 34999999999999999999999999999999999999997 79999999987642 34568999999999999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccC
Q 000576 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325 (1412)
Q Consensus 246 e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~L 325 (1412)
||++|+.++.|+.+.. ...+....+..+||++..+ +++-.|
T Consensus 93 dNvafgL~l~Gi~k~~----------------------------------R~~~a~q~l~~VgL~~~~~-----~~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ----------------------------------RREIAHQMLALVGLEGAEH-----KYIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHHH----------------------------------HHHHHHHHHHHhCcccccc-----cceEee
Confidence 9999999998864321 1234566888999987665 445579
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC--Ce
Q 000576 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD--GQ 403 (1412)
Q Consensus 326 SGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~--G~ 403 (1412)
||||||||.|||||.-+|+.|+||||+++||.-|++++.+.|-++.+. .++-+..++|+.+|+.-++++++||+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999998875 466677799999999999999999984 79
Q ss_pred EEEecChh
Q 000576 404 IVYQGPRE 411 (1412)
Q Consensus 404 iv~~G~~~ 411 (1412)
|+..=+++
T Consensus 213 vv~~~~~d 220 (259)
T COG4525 213 VVERLPLD 220 (259)
T ss_pred eeEecCCC
Confidence 98876655
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=335.17 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=181.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-C-eEEEEEEEcCc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT-G-YVTGNITISGY 891 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~ 891 (1412)
.++++|+++.++.+ .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37899999888521 1124699999999999999999999999999999999997542 2 35799999998
Q ss_pred cCCcc---cc----cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCC
Q 000576 892 PKKQE---TF----ARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962 (1412)
Q Consensus 892 ~~~~~---~~----~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 962 (1412)
++... .+ ++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+..+.+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~-- 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV-- 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--
Confidence 86431 11 23689999997 47889999998865543221 22344556778999999999753222211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
....|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|++++|.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2357999999999999999999999999999999999999999999999976 4899999999987 4678899999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|+.
T Consensus 229 ~-G~ive~g~~ 238 (326)
T PRK11022 229 A-GQVVETGKA 238 (326)
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=378.40 Aligned_cols=206 Identities=25% Similarity=0.357 Sum_probs=166.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.++ +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 45999999999999999999999999999999999999997 7999999999877654 57899999976554 67
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++.. +.+.+...+++...+ ..+.+ -.++.+.||.+|+++.
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~-----l~~~i---~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA-----IHDVI---TSRPGGYDAELAEGGA 614 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC-----CHHHH---HhCcCcccceeccCCC
Confidence 99999987521 111111212111110 11111 1377788999998764
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|++ . +.|+|.++|..+. ...+|+|++|++|
T Consensus 615 -~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~-~~T~IiitHrl~~-i~~~D~Iivl~~G 687 (710)
T TIGR03796 615 -NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----R-GCTCIIVAHRLST-IRDCDEIIVLERG 687 (710)
T ss_pred -CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----c-CCEEEEEecCHHH-HHhCCEEEEEeCC
Confidence 7999999999999999999999999999999999999999999975 2 4556657777655 4669999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=334.84 Aligned_cols=224 Identities=20% Similarity=0.286 Sum_probs=182.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-eEEEEEEEcCcc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-YVTGNITISGYP 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 892 (1412)
.++++|+++.+... ++...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58999999887521 12356999999999999999999999999999999999976542 137999999988
Q ss_pred CCc---cc---c-cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 893 KKQ---ET---F-ARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 893 ~~~---~~---~-~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
+.. .. + .+.++|++|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 1 24699999997 67899999999876544322 2344455567888999999875333222 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|+|++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999999765 899999999987 46778999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 899999986
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.68 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=170.8
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 87 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChh
Confidence 33456999999999999999999999999999999999999987 79999999987421 11357999999864
Q ss_pred -cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 238 -HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 238 -~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+...|+.||+.+..+..+... .+....++.+++.+||++..++.
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 133 (271)
T PRK13638 88 QQIFYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQP 133 (271)
T ss_pred hccccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCC
Confidence 3456789999988643221100 01112345688889998766655
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++.+++|++
T Consensus 134 ~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH~~~~~~~~~d~i 206 (271)
T PRK13638 134 I-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA--QGNHVIISSHDIDLIYEISDAV 206 (271)
T ss_pred c-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999864 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 207 ~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 207 YVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.35 Aligned_cols=223 Identities=24% Similarity=0.314 Sum_probs=179.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++||++.++.....+ ..+.+.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 68899998874210000 00135699999999999999999999999999999999997654 4799999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCC
Q 000576 895 QE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 965 (1412)
.. ..++.++|++|++ .+.+.+||+|++.+..... ........++.++++++.+++. ...+.. ..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1345799999986 4667899999997654321 1122233445688999999995 455543 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57778999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999986
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=342.54 Aligned_cols=208 Identities=23% Similarity=0.401 Sum_probs=174.3
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-------CccceEEEE
Q 000576 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-------VPQRTAAYI 232 (1412)
Q Consensus 160 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv 232 (1412)
+++++++. + |+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|+
T Consensus 6 ~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 6 SKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEE
Confidence 33444444 4 999999999999999999999999999999999987 79999999887532 124679999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
+|++.+++.+||+||+.|+.+.... .+....++++++.+||++.
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~------------------------------------~~~~~~~~~~l~~~gL~~~ 124 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARP------------------------------------SERRISFERVIELLGIGHL 124 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccCh------------------------------------hHHHHHHHHHHHHcCChhH
Confidence 9999899999999999986432100 0011235678899999877
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.|+.+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+
T Consensus 125 ~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 125 LGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRL 198 (354)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHh
Confidence 76554 469999999999999999999999999999999999999999999998653 356777789999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000576 393 FDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
+|++++|++|+++..|+++++.
T Consensus 199 ~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 199 ADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999988874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=322.33 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=164.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCCCc
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 238 (1412)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 346999999999999999999999999999999999999887 799999998875432 13579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.+.....+... ++....++.+++.+||++..++.+
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 135 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP- 135 (222)
T ss_pred cccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-
Confidence 889999999988653321100 011123456788899987665544
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++++++++|+.+++..++|+|++
T Consensus 136 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~ 209 (222)
T PRK10908 136 ----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLT 209 (222)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 47999999999999999999999999999999999999999999999854 356777799999999999999999
Q ss_pred EeCCeEE
Q 000576 399 ISDGQIV 405 (1412)
Q Consensus 399 L~~G~iv 405 (1412)
|++|+++
T Consensus 210 l~~G~i~ 216 (222)
T PRK10908 210 LSDGHLH 216 (222)
T ss_pred EECCEEc
Confidence 9999985
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=323.39 Aligned_cols=201 Identities=26% Similarity=0.341 Sum_probs=163.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC------ccceEEEEcCCC--Cc
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV------PQRTAAYISQHD--VH 238 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 238 (1412)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 799999999876533 235799999987 45
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-ccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMV 317 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 317 (1412)
.+.+||+||+.+.....+..... .......+.+++.+|+. ...+..
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK--------------------------------EARKEAVLLLLVGVGLPEEVLNRY- 142 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH--------------------------------HHHHHHHHHHHHHCCCChhHhhCC-
Confidence 67899999998864332110000 00011124577888885 344444
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|+++
T Consensus 143 ----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 143 ----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEE
Confidence 4479999999999999999999999999999999999999999999998653 25677778999999999999999
Q ss_pred EEeCCeEEEec
Q 000576 398 LISDGQIVYQG 408 (1412)
Q Consensus 398 vL~~G~iv~~G 408 (1412)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=324.55 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=178.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478999998874 2359999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ..+++.++|++|+..+++.+|++||+.+...... .....+.++.++++++.+++......... ....
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346679999999999999999999987543321 11223334567888999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999987 57789999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9999985
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=331.75 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=170.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCC-cCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDV-HIG 240 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 240 (1412)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999886 7999999998754321 357999999864 467
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
..||+||+.|+.+..+.. + .+....++.+++.+||++..++.+
T Consensus 92 ~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP-P---------------------------------IEIRKRVDRALAEIGLEKYRHRSP--- 134 (274)
T ss_pred cchHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHHHhcCCc---
Confidence 789999999865332110 0 011223566888999987766655
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|++++|+..++ ..+|++++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 135 --KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 367777789999888 5699999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=329.46 Aligned_cols=215 Identities=24% Similarity=0.319 Sum_probs=179.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5899999988741 124589999999999999999999999999999999997654 479999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++.+..++++++.+++.+..+..+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998764322 1223344556889999999987766654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999873 4 47999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=331.66 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=172.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 241 (1412)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 35999999999999999999999999999999999999987 8999999998754322 356899999853 3557
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
.||+||+.++....+.. ..+....++.+++.+||.+..++.++
T Consensus 94 ~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (277)
T PRK13652 94 PTVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVPH--- 136 (277)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998764322110 00112235678999999877766554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|++
T Consensus 137 --~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 137 --HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 356777789999999999999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=328.09 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=173.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC----------------ccc
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV----------------PQR 227 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~ 227 (1412)
+++++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN 87 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhh
Confidence 3456999999999999999999999999999999999999886 799999998775321 145
Q ss_pred eEEEEcCCCCcCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHH
Q 000576 228 TAAYISQHDVHIGEMTVRETLAFSARC-QGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI 306 (1412)
Q Consensus 228 ~~~yv~Q~d~~~~~lTV~e~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 306 (1412)
.++|++|++.+++.+||+||+.++... .+.. . .+....++.+++.
T Consensus 88 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~ 133 (252)
T TIGR03005 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R------------------------AEAEKRAMELLDM 133 (252)
T ss_pred CeEEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHH
Confidence 799999998888899999999875321 0000 0 0011234567889
Q ss_pred hCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 000576 307 LGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPA 386 (1412)
Q Consensus 307 lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~ 386 (1412)
+|+++..+.. +..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++++.++|+.
T Consensus 134 ~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 207 (252)
T TIGR03005 134 VGLADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEM 207 (252)
T ss_pred cCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 9998766544 4479999999999999999999999999999999999999999999998653 367777799999
Q ss_pred hhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 387 PEAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 387 ~~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
+++.+++|++++|++|++++.|+.+++.
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 208 GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=326.90 Aligned_cols=214 Identities=23% Similarity=0.305 Sum_probs=171.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCcC---ccceEEEEcCCCCcC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEFV---PQRTAAYISQHDVHI 239 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 239 (1412)
++++|+|+|++|++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 356999999999999999999999999999999999998741 113799999999875432 235799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.++.+..+.... ..+....++.+++.+||.+..+.. -+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDR-LD 141 (250)
T ss_pred CCCcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hc
Confidence 899999999986532210000 001112345678888886421111 12
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|++++|
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999999742 467777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=331.33 Aligned_cols=218 Identities=24% Similarity=0.330 Sum_probs=176.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378899998874210 0013599999999999999999999999999999999997654 479999999875
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCC
Q 000576 894 KQ-------ETFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPG 963 (1412)
Q Consensus 894 ~~-------~~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~ 963 (1412)
.. ..+++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 22456789999986 3444 69999998764332 1223344456788999999963 44443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 3479999999999999999999999999999999999999999999999777899999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=320.31 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=175.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 58899999887421 0113599999999999999999999999999999999997654 479999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 894 KQET------F-ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 894 ~~~~------~-~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
.... . ++.++|++|++.+++.+|+.||+.+....+. ....+.++.++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 2468999999988899999999987654321 223344567889999999987666543 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999987 34 56999999985 78
Q ss_pred EEE
Q 000576 1046 EIY 1048 (1412)
Q Consensus 1046 ~~y 1048 (1412)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.11 Aligned_cols=211 Identities=21% Similarity=0.296 Sum_probs=167.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCcC-----ccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEFV-----PQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 3459999999999999999999999999999999999987510 13799999998874321 2356999999877
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ +||+||+.|+.+..+... .+....++.+++.+|+....+...
T Consensus 104 ~~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRL 148 (258)
T ss_pred cCc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 899999998753321100 001123456778888742111111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+.+++.+++|+++
T Consensus 149 -~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 149 -KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred -cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCEEE
Confidence 233457999999999999999999999999999999999999999999999743 4677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+++++.
T Consensus 225 ~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 225 FFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988763
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=327.91 Aligned_cols=220 Identities=24% Similarity=0.277 Sum_probs=177.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---CeEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT---GYVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 689999999874 24599999999999999999999999999999999996542 12579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+..+.++++++.+++.+....... ....
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2345678999999887775 999999887543321 11223334567889999998642111111 1135
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=329.89 Aligned_cols=214 Identities=27% Similarity=0.350 Sum_probs=178.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ +.+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 67899998873 123589999999999999999999999999999999997654 4799999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 Q-----ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~-----~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999863 334579999998754321 1233444556889999999987776653 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999986 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9985
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=321.64 Aligned_cols=200 Identities=25% Similarity=0.345 Sum_probs=169.4
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 242 (1412)
++++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++..++.+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~ 85 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENL 85 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccC
Confidence 34457999999999999999999999999999999999999887 899999998765322 35799999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+||+.+.....+. .+..++.+++.+||++..|..+
T Consensus 86 t~~~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~----- 122 (223)
T TIGR03740 86 TARENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKA----- 122 (223)
T ss_pred CHHHHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhH-----
Confidence 999999876432210 0012355788899987666554
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+..++.+++|++++|++|
T Consensus 123 ~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEG 200 (223)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999854 3566777889999999999999999999
Q ss_pred eEEEecChh
Q 000576 403 QIVYQGPRE 411 (1412)
Q Consensus 403 ~iv~~G~~~ 411 (1412)
++++.|++.
T Consensus 201 ~i~~~~~~~ 209 (223)
T TIGR03740 201 VLGYQGKIN 209 (223)
T ss_pred EEEEecChh
Confidence 999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=322.90 Aligned_cols=210 Identities=25% Similarity=0.316 Sum_probs=173.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++||++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 46788888774 24699999999999999999999999999999999997654 4799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CchhhhcccCCCCCCCCCH
Q 000576 895 QE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVE-LNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 895 ~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ..++.++|++|+..+++.+|+.|++.+....+. .. ..+..+++++.++ +.+..+.. ...|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 31 124568999999999999999999987654321 11 1223567777776 44444443 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998864 899999999986 57778999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 213 ~~~~ 216 (230)
T TIGR03410 213 SGAG 216 (230)
T ss_pred ECCH
Confidence 9986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=329.02 Aligned_cols=205 Identities=27% Similarity=0.371 Sum_probs=169.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC---ccceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 241 (1412)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 45899999999999999999999999999999999999987 799999999875432 2457999999863 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.++....+.. ..+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 99999998864321100 0011224567889999987766655
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++. ++++|++++|+.+++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 3466776888888775 7999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.06 Aligned_cols=194 Identities=27% Similarity=0.433 Sum_probs=161.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 241 (1412)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 57999999999999999999999999999999999999887 7999999988754321 357999999864 4678
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.++....+... .+.....+.+++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988643211000 001123456788899986665544
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.+++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999865 256777799999999999999999999
Q ss_pred Ce
Q 000576 402 GQ 403 (1412)
Q Consensus 402 G~ 403 (1412)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.16 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=174.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc----cceEEEEcCCCCcCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQHDVHIG 240 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 240 (1412)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 456999999999999999999999999999999999999987 7999999998764332 235899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+||+||+.++....... +...... + .+..+ ....+....++.+++.+||++..++.+
T Consensus 94 ~~tv~enl~~~~~~~~~~---~~~~~~~------~-~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 151 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKT---GLFSGLL------K-TPAFR---------RAESEALDRAATWLERVGLLEHANRQA--- 151 (255)
T ss_pred CCcHHHHHHHhhhccccc---hhhhhhc------c-ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh---
Confidence 999999999864311000 0000000 0 00000 000011234566788999986666554
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|+
T Consensus 152 --~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 152 --GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.78 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=178.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 57889998774 24699999999999999999999999999999999997654 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAW-LRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
. ...++.++|++|++.+++.+||+||+.+... .+........+..+.++++++.+++.+..+..+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2234568999999877888999999987521 110000111223456788999999977666543 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57789999999985 7999998
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 86
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=374.29 Aligned_cols=206 Identities=24% Similarity=0.405 Sum_probs=164.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++. +++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lF~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPV-LFSG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcc-cccc
Confidence 46899999999999999999999999999999999999997 7999999999877654 478999999765 4568
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|+||||.++.... +.+...++....+ . +..++ .+++..||.+|+++.
T Consensus 570 TIreNI~~g~~~~-------------------------~~e~i~~al~~a~-----l-~~~i~--~lp~GldT~ige~G~ 616 (711)
T TIGR00958 570 SVRENIAYGLTDT-------------------------PDEEIMAAAKAAN-----A-HDFIM--EFPNGYDTEVGEKGS 616 (711)
T ss_pred CHHHHHhcCCCCC-------------------------CHHHHHHHHHHcC-----C-HHHHH--hCCCccCCcccCCCC
Confidence 9999999863210 1111111111100 0 11112 367788999998754
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.||||||||++||||++++|+|++||||||+||+.++..|.+ ... .+++|++.++|..+. .+.+|+|++|++|
T Consensus 617 -~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----~~~~TvIiItHrl~~-i~~aD~IivL~~G 689 (711)
T TIGR00958 617 -QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS----RASRTVLLIAHRLST-VERADQILVLKKG 689 (711)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc----cCCCeEEEEeccHHH-HHhCCEEEEEECC
Confidence 799999999999999999999999999999999999998887 221 245667768888754 5679999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=367.00 Aligned_cols=206 Identities=22% Similarity=0.292 Sum_probs=166.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 243 (1412)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DT 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-ch
Confidence 5899999999999999999999999999999999999997 7999999999877654 478999999876655 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
++|||.++... ..+.+. +++...+ .+..++ .|++..||.+|+.+.
T Consensus 431 i~~NI~~~~~~-----~d~~i~---------------------~a~~~~g------l~~~i~--~lp~Gldt~i~e~g~- 475 (592)
T PRK10790 431 FLANVTLGRDI-----SEEQVW---------------------QALETVQ------LAELAR--SLPDGLYTPLGEQGN- 475 (592)
T ss_pred HHHHHHhCCCC-----CHHHHH---------------------HHHHHcC------cHHHHH--hccccccccccCCCC-
Confidence 99999986310 001111 1110000 011122 267788999998665
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.||||||||++|||||+.+|+|++||||||+||+.++.+|.+.|+++.. ++|++.++|.. +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecch-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998643 34555567766 4566799999999999
Q ss_pred EEEecChhhHHH
Q 000576 404 IVYQGPREHVLE 415 (1412)
Q Consensus 404 iv~~G~~~~~~~ 415 (1412)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=328.08 Aligned_cols=206 Identities=24% Similarity=0.334 Sum_probs=171.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc----------------Cccce
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF----------------VPQRT 228 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~ 228 (1412)
++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 456999999999999999999999999999999999999886 79999999876421 11357
Q ss_pred EEEEcCCCCcCCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHh
Q 000576 229 AAYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL 307 (1412)
Q Consensus 229 ~~yv~Q~d~~~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 307 (1412)
++|++|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~ 139 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKV 139 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHc
Confidence 9999999888888999999987532 11100 001122345688999
Q ss_pred CCCccc-cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 000576 308 GLDVCA-DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPA 386 (1412)
Q Consensus 308 gL~~~~-dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~ 386 (1412)
||++.. + +.+..||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++++ .+.+|+.++|+.
T Consensus 140 gl~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~ 212 (257)
T PRK10619 140 GIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEM 212 (257)
T ss_pred CCChhhhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 997643 3 33457999999999999999999999999999999999999999999999864 367777789999
Q ss_pred hhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 387 PEAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 387 ~~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
.++.+++|+|++|++|++++.|+++++.
T Consensus 213 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 213 GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=333.90 Aligned_cols=225 Identities=22% Similarity=0.241 Sum_probs=183.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.|+++||++.|....... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 589999998885321000 001235799999999999999999999999999999999997654 479999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCC
Q 000576 894 KQE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGV 964 (1412)
Q Consensus 894 ~~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~ 964 (1412)
... .+++.++|++|++ .+.|.+|+.+++....... ......+.++.+.++++.++|.+ ..+.. .
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 5889999999987654332 12344555677899999999963 44443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..||||||||++|||||+.+|++|++||||++||..++..|++.|+++.++ |.|||++||+++ .+.+.+|++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 899999986
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=320.73 Aligned_cols=213 Identities=25% Similarity=0.389 Sum_probs=180.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
+.++|++++++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35788888774 23699999999999999999999999999999999997654 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|+...++.+|+.||+.+....+. .......+.++++++.+++.+..+..+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 32 224678999999998889999999987654331 223334456788999999987766553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57888999999985 899988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=324.05 Aligned_cols=219 Identities=19% Similarity=0.267 Sum_probs=176.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC-CeEEEEEEEcCccC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT-GYVTGNITISGYPK 893 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 893 (1412)
++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67899998874 23699999999999999999999999999999999996432 23579999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
.. ..+++.++|++|++.+++ .|++||+.+....+.... .....++.++++++.+++......... .....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567899999988887 699999988654432111 112334457889999999532211111 123579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57788999999985 8999998
Q ss_pred CC
Q 000576 1051 PL 1052 (1412)
Q Consensus 1051 ~~ 1052 (1412)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 75
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=337.92 Aligned_cols=203 Identities=20% Similarity=0.298 Sum_probs=174.7
Q ss_pred CceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc----cCCc---cc---c-cceEEEec
Q 000576 838 DRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY----PKKQ---ET---F-ARISGYCE 906 (1412)
Q Consensus 838 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~~yv~ 906 (1412)
+...+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+|+|.++|. ++.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 346799999999999999999999999999999999997654 4799999996 2211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000576 907 QNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 986 (1412)
Q Consensus 907 Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~ 986 (1412)
|+..++|.+||+||+.|....+ .....++++.++++++.++|.+..+... ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2334556677899999999988776654 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 987 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 987 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 899999999987 57889999999985 899999986
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=321.08 Aligned_cols=196 Identities=25% Similarity=0.368 Sum_probs=161.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999887 8999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++.+||+||+.++....... . .+....++.+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------V------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 88899999998864321100 0 001123456888999987666544
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .+.+|+.++|+..++. .+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHh-hcCEEEE
Confidence 479999999999999999999999999999999999999999999998653 2566677888888775 4799999
Q ss_pred EeCCeEE
Q 000576 399 ISDGQIV 405 (1412)
Q Consensus 399 L~~G~iv 405 (1412)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=321.57 Aligned_cols=213 Identities=26% Similarity=0.397 Sum_probs=180.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35788888774 23699999999999999999999999999999999997654 4799999998765
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..+... ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234578999999998999999999987654331 222333456788999999977666543 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|++||++|+.+|++++|||||+|||..+...+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 57888999999985 899999885
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=336.94 Aligned_cols=214 Identities=20% Similarity=0.248 Sum_probs=173.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CceeEEEECCccCCCcCc-------cceEEEEcCCC-
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RLYGRVTYNGHNMDEFVP-------QRTAAYISQHD- 236 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 236 (1412)
.++|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 138999999998765432 13699999986
Q ss_pred -CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 237 -VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 237 -~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
.+.+.+||.+++....+..... ...+....++.+|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------------------------------~~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------------------------------NKKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------------------------------CHHHHHHHHHHHHHHCCCCChHH-
Confidence 4788999999987654321000 00112234567899999975221
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
+-++.+..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 113456689999999999999999999999999999999999999999999998653 466788899999999999999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 000576 396 IILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~ 415 (1412)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.26 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=174.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 35788888763 135799999999999999999999999999999997654 4799999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 Q-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~-~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
. ...++.++|++|++.+++.+|+.||+.+....+. .. ....++.++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 3 2345679999999999999999999976532211 11 1123456788999999987766553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~ 1051 (1412)
|++|||+|+.+|++++|||||+|||..++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 56778999999985 89988874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.50 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=170.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc--C---ccceEEEEcCCCC-cC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF--V---PQRTAAYISQHDV-HI 239 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 239 (1412)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 45999999999999999999999999999999999999887 79999999987421 1 1357999999852 44
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
..+||+||+.++....+. .+ .+....+..+++.+||++..++.++
T Consensus 92 ~~~tv~e~i~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 136 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGL-SK---------------------------------EEVEKRVKEALKAVGMEGFENKPPH- 136 (275)
T ss_pred ccccHHHHHHHHHHHcCC-CH---------------------------------HHHHHHHHHHHHHCCCchhhcCChh-
Confidence 567999999876321110 00 0111234568899999877776554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.+++|++++|
T Consensus 137 ----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 137 ----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK--EGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999864 3677777999999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=375.43 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=167.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+ ++.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSG 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhH
Confidence 35899999999999999999999999999999999999997 7999999999877654 4789999997655 467
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+|||.++.+. +.+.+.+.+++...+ ..+.+. .++.+.||.+|+.+.
T Consensus 563 TI~eNi~l~~~~------------------------~~~~~~i~~a~~~a~-----l~~~i~---~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 563 SILENLLLGAKE------------------------NVSQDEIWAACEIAE-----IKDDIE---NMPLGYQTELSEEGS 610 (708)
T ss_pred HHHHHHhccCCC------------------------CCCHHHHHHHHHHhC-----CHHHHH---hcccccCcEecCCCC
Confidence 999999986311 111111222211111 112221 377888999998664
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+||||||||++||||++++|++|+||||||+||+.++..|.+.|+++ .++|+|.++|..+ ..+.+|+|++|++|
T Consensus 611 -~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~----~~~T~IiitHr~~-~~~~~D~i~~l~~G 684 (708)
T TIGR01193 611 -SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL----QDKTIIFVAHRLS-VAKQSDKIIVLDHG 684 (708)
T ss_pred -CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh----cCCEEEEEecchH-HHHcCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999873 2455666777765 55789999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.14 Aligned_cols=207 Identities=25% Similarity=0.396 Sum_probs=164.8
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCc
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVH 238 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~ 238 (1412)
++++++++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~ 79 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSI 79 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEecccccc
Confidence 344444567999999999999999999999999999999999999887 7999999987642 34679999998655
Q ss_pred C--CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 239 I--GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 239 ~--~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
. +.+||+||+.++...... .+.. .. .+....++.+++.+||++..++.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~--~~~~----------------~~------------~~~~~~~~~~l~~~~l~~~~~~~ 129 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKG--LFRR----------------LS------------KADKAKVDEALERVGLSELADRQ 129 (213)
T ss_pred ccCCCCcHHHHHHhccccccc--cccC----------------CC------------HHHHHHHHHHHHHcCCHHHHhCC
Confidence 3 348999999886421100 0000 00 00112356688899998666655
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++++.++|+.+++.+++|++
T Consensus 130 ~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 130 I-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999999865 3567777899999999999999
Q ss_pred EEEeCCeEEEec
Q 000576 397 ILISDGQIVYQG 408 (1412)
Q Consensus 397 ivL~~G~iv~~G 408 (1412)
++|++| +++.|
T Consensus 203 ~~l~~~-~~~~g 213 (213)
T cd03235 203 LLLNRT-VVASG 213 (213)
T ss_pred EEEcCc-EeecC
Confidence 999886 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=327.47 Aligned_cols=215 Identities=24% Similarity=0.308 Sum_probs=179.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 5899999988741 123589999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.++|++|++. +++..|+.+++.+..... ....++..+.++++++.+++.+..+.. ...||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677889999998764322 123334445678899999998766654 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.. +|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 4554 999999985 89999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 9986
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=368.73 Aligned_cols=209 Identities=23% Similarity=0.389 Sum_probs=167.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.++ +.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-ND 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceee-cc
Confidence 45999999999999999999999999999999999999997 7999999999877653 47899999976655 57
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++.... .+.+...++....+ .+..++ .|++..||.+|+++.
T Consensus 432 Ti~~Ni~~~~~~~------------------------~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 432 TIANNIAYARTEQ------------------------YSREQIEEAARMAY------AMDFIN--KMDNGLDTVIGENGV 479 (582)
T ss_pred hHHHHHhcCCCCC------------------------CCHHHHHHHHHHhC------cHHHHH--hcccccCceeCCCCC
Confidence 9999999863100 11111111111000 011122 377888999998764
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. .+.|++.++|.. +..+.||+|++|++|
T Consensus 480 -~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~---~~~tvI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 480 -LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ---KNRTSLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred -cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEecch-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999863 245566577776 556779999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.51 Aligned_cols=207 Identities=21% Similarity=0.296 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 458999999999999999999999999999999999998631 1379999999876421 124579999998776
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC----cccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 314 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 314 (1412)
+ .+||+||+.|+....+.... .+....++.+++.+|+. +..|
T Consensus 100 ~-~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 F-LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred c-cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHh
Confidence 6 58999999987533211000 00112345567777763 3334
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
+. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|
T Consensus 146 ~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 146 TN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 43 457999999999999999999999999999999999999999999999842 4667778999999999999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 000576 395 DIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 395 ~vivL~~G~iv~~G~~~~~~ 414 (1412)
++++|++|+++.+|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=335.81 Aligned_cols=209 Identities=21% Similarity=0.260 Sum_probs=174.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCC--
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHD-- 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 236 (1412)
.+.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++
T Consensus 27 ~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~ 103 (327)
T PRK11308 27 LVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYG 103 (327)
T ss_pred ceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchh
Confidence 356999999999999999999999999999999999999886 7999999998765432 35799999986
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc-cccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV-CADT 315 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt 315 (1412)
.+.+.+||.+++....+...... ..+....+.++++.+||+. ..++
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~gL~~~~~~~ 150 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINTSLS---------------------------------AAERREKALAMMAKVGLRPEHYDR 150 (327)
T ss_pred hcCCccCHHHHHHHHHHHccCCC---------------------------------HHHHHHHHHHHHHHCCCChHHhcC
Confidence 57888999999987543321000 0011234567899999963 4444
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+
T Consensus 151 -----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 151 -----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred -----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 45579999999999999999999999999999999999999999999998653 367788899999999999999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 000576 396 IILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~~ 415 (1412)
|++|++|++++.|+.+++.+
T Consensus 225 v~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 225 VMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEEECCEEEEECCHHHHhc
Confidence 99999999999999988853
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=325.26 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 459999999999999999999999999999999999864 1001379999999887531 113579999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ .||+||+.++....+...+ .+....++.+++.+||.+...+..
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 76 5999999987533221000 001123455677778754221222
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNMQQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999999842 46777789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 221 FYMGKLIEVGPTEQIF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=324.52 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=167.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 241 (1412)
++.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 345999999999999999999999999999999999999887 7999999988754322 357999999877665
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-ccccccccCc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGDE 320 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~ 320 (1412)
.||+||+.++....+ . ....++.+++.+||+ +..++
T Consensus 91 ~tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~----- 127 (241)
T PRK14250 91 GTVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR----- 127 (241)
T ss_pred hhHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----
Confidence 699999987532110 0 001234578888996 33443
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.+..||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|+|++|+
T Consensus 128 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~ 206 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLN 206 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEe
Confidence 34579999999999999999999999999999999999999999999997653 35677779999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|+++..|+++++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (241)
T PRK14250 207 KGILVEYAKTYDFF 220 (241)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988763
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=325.21 Aligned_cols=205 Identities=25% Similarity=0.326 Sum_probs=169.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCC------c---CccceEEEEcCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE------F---VPQRTAAYISQH 235 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~ 235 (1412)
++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|+
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 346999999999999999999999999999999999999886 7999999987631 0 113579999999
Q ss_pred CCcCCCCCHHHHHHHhh-hhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccc
Q 000576 236 DVHIGEMTVRETLAFSA-RCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCAD 314 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 314 (1412)
+.+++.+||+||+.+.. ...+... .+....++.+++.+||++..+
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~ 136 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYAD 136 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhh
Confidence 88899999999997532 1111000 001123566888999987666
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
+.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.. .+++++.++|+..++.+++|
T Consensus 137 ~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 137 RFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 554 47999999999999999999999999999999999999999999998753 35677778999999999999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 000576 395 DIILISDGQIVYQGPREHV 413 (1412)
Q Consensus 395 ~vivL~~G~iv~~G~~~~~ 413 (1412)
++++|.+|+++++|+++++
T Consensus 210 ~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 210 RVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEEECCEEEEeCCHHHh
Confidence 9999999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=333.77 Aligned_cols=221 Identities=19% Similarity=0.247 Sum_probs=179.3
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---CeEEEEEEEc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT---GYVTGNITIS 889 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 889 (1412)
..++++|+++++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36899999998841 124599999999999999999999999999999999996532 1347999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 890 GYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDS-KTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 890 g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~-~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
|.++.. ...++.++||+|++.+++ .|++||+.|..... ...+ +..++.++++++.++|.+..++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998752 234667999999988775 79999999864322 1222 222344677888888754333334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999875 699999999987 47778999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|++
T Consensus 300 G~i~e~g~~ 308 (329)
T PRK14257 300 GWIEEAGET 308 (329)
T ss_pred CEEEEeCCH
Confidence 899999986
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=292.79 Aligned_cols=214 Identities=26% Similarity=0.365 Sum_probs=184.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
+..++++.+|+.. ...+|+|||+.|.+||.+.++||||||||||||+++|..++ ..|+|.+||.+++
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEecc
Confidence 4566777776521 24589999999999999999999999999999999998765 5799999999876
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
...- ..|.|+|++.++|.+||.||+.|+..++. +.+.++.+.+.+.+..+||.+..+..+ -.||||||||
T Consensus 71 gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQR 140 (259)
T COG4525 71 GPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQR 140 (259)
T ss_pred CCCc--cceeEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHH
Confidence 4332 24899999999999999999999998874 567888889999999999998877654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhhccEeEEecC-cEEEEEcCC
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRG-GQEIYVGPL 1052 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g-G~~~y~G~~ 1052 (1412)
+.|||||..+|+.|+||||.+.||+-+++.++++|-++. .+|+.++++||+... ..-+++++++|+.| ||++..=|+
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999998876 469999999999874 44578999999843 788877666
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=327.40 Aligned_cols=219 Identities=21% Similarity=0.261 Sum_probs=175.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITIS 889 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 889 (1412)
..++++|++++++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3689999998874 246999999999999999999999999999999999975421 257999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCC
Q 000576 890 GYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964 (1412)
Q Consensus 890 g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 964 (1412)
|.++.. ...++.++|++|++.+++. ||+||+.+.+..+. ... ..++.++++++.+++....+.... ...
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLN-ESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhC-CCc
Confidence 987531 2345678999999888874 99999988764432 111 223456778888877421111111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec--
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR-- 1042 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~-- 1042 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999864 799999999987 57889999999985
Q ss_pred --------CcEEEEEcCC
Q 000576 1043 --------GGQEIYVGPL 1052 (1412)
Q Consensus 1043 --------gG~~~y~G~~ 1052 (1412)
+|++++.|++
T Consensus 231 ~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNET 248 (269)
T ss_pred cccccccccceEEEeCCH
Confidence 3678999986
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=364.50 Aligned_cols=207 Identities=26% Similarity=0.431 Sum_probs=165.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.++ +.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SA 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhh-cc
Confidence 35899999999999999999999999999999999999997 7999999999877654 46799999976554 67
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++||+.++... .+.+...++....+ .+..+ -. +++.||.+|+++.
T Consensus 429 ti~~Ni~~~~~~-------------------------~~~~~i~~al~~~~------l~~~i--~~-p~GldT~vge~g~ 474 (574)
T PRK11160 429 TLRDNLLLAAPN-------------------------ASDEALIEVLQQVG------LEKLL--ED-DKGLNAWLGEGGR 474 (574)
T ss_pred cHHHHhhcCCCc-------------------------cCHHHHHHHHHHcC------CHHHH--cC-ccccCchhcCCCC
Confidence 999999986320 11111111111000 01111 13 6778999998755
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.||||||||++||||++++|++|+||||||+||+.++..|.+.|+++. +++|++.++|..+.+ +.+|+|++|++|
T Consensus 475 -~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~---~~~tviiitHr~~~~-~~~d~i~~l~~G 549 (574)
T PRK11160 475 -QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMITHRLTGL-EQFDRICVMDNG 549 (574)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecChhHH-HhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999999874 245555577776655 569999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
++++.|+++++.+
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=358.43 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=184.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|||+++++||+++|+||||||||||+++|+|...+++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999998874 2469999999999999999999999999999999999765433579999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQET----FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~~~----~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.... .++.+||++|++.+++.+||+|++.+....+.......++.++.++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24568999999988999999999988653321111123334456889999999977666553 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred cCCCC
Q 000576 1050 GPLGR 1054 (1412)
Q Consensus 1050 G~~~~ 1054 (1412)
|+..+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 98754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=320.90 Aligned_cols=200 Identities=29% Similarity=0.396 Sum_probs=168.0
Q ss_pred ceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCCC
Q 000576 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ--ETFARISGYCE-QNDIHSPQV 915 (1412)
Q Consensus 839 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~yv~-Q~~~~~~~l 915 (1412)
.+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 45799999999999999999999999999999999997654 47999999986432 23456789997 556777899
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000576 916 TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 995 (1412)
Q Consensus 916 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTs 995 (1412)
|++|++.+...++. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 111 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999987654432 223334456788999999987776654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 996 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 996 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 99999999999999998764 899999999986 57788999999985 7888765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.25 Aligned_cols=217 Identities=23% Similarity=0.317 Sum_probs=171.8
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCceeEEEECCccCCCcCc----cceEEEEcCC
Q 000576 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRLYGRVTYNGHNMDEFVP----QRTAAYISQH 235 (1412)
Q Consensus 162 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~ 235 (1412)
+++++.+|+|+|++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|+
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQY 85 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecc
Confidence 334456999999999999999999999999999999999995 555 7999999998754332 2348999999
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc-ccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV-CAD 314 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~d 314 (1412)
+..++.+|++|++.+..+...... +.... ...+....++.+++.+||+. ..+
T Consensus 86 ~~~~~~~t~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~ 138 (243)
T TIGR01978 86 PEEIPGVSNLEFLRSALNARRSAR------------------GEEPL---------DLLDFLKLLKAKLALLGMDEEFLN 138 (243)
T ss_pred ccccCCcCHHHHHHHHHHHhhccc------------------ccccc---------cHHHHHHHHHHHHHHcCCchhhcc
Confidence 988999999999988643211000 00000 00011234567889999973 445
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-c
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL-F 393 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~-~ 393 (1412)
+.++ ..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++... +
T Consensus 139 ~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~ 212 (243)
T TIGR01978 139 RSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKP 212 (243)
T ss_pred cccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcC
Confidence 4433 14999999999999999999999999999999999999999999999854 356777789999999888 8
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000576 394 DDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~ 414 (1412)
|++++|++|++++.|+++++.
T Consensus 213 d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 213 DYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=321.08 Aligned_cols=198 Identities=24% Similarity=0.361 Sum_probs=166.2
Q ss_pred ecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000576 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLL 922 (1412)
Q Consensus 843 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~ 922 (1412)
|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5789999999999999999999999999999997654 4799999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000576 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002 (1412)
Q Consensus 923 f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~ 1002 (1412)
+...... ......+.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 12233344556788999999987666543 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 1003 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1003 ~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999987 57888999999985 899988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=327.47 Aligned_cols=219 Identities=26% Similarity=0.347 Sum_probs=177.9
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC------eEEEEEEE
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG------YVTGNITI 888 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------~~~G~i~i 888 (1412)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 67899998773 246999999999999999999999999999999999975532 12799999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCC
Q 000576 889 SGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964 (1412)
Q Consensus 889 ~g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 964 (1412)
+|.+... ..+++.++|++|++..++.+||+||+.+....... ......+.++.++++++.+++.+..+.. .
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111123345678899999998765543 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhh
Q 000576 965 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1034 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~f 1034 (1412)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 479999999999999999 599999999999999999999999999998765 899999999987 577889
Q ss_pred ccEeEEecCcEEEEEcCCC
Q 000576 1035 DELFLLKRGGQEIYVGPLG 1053 (1412)
Q Consensus 1035 D~v~ll~~gG~~~y~G~~~ 1053 (1412)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 8999999863
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=330.07 Aligned_cols=205 Identities=25% Similarity=0.355 Sum_probs=171.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC----ccceEEEEcCCCC-cCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV----PQRTAAYISQHDV-HIG 240 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 240 (1412)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 799999999875421 2467999999863 344
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
..||.||+.|+....+... .+....++++++.+||++..++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 5799999998753322100 0112245678999999877776654
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 69999999999999999999999999999999999999999999998653 36677778899888876 99999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=334.25 Aligned_cols=226 Identities=17% Similarity=0.209 Sum_probs=179.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--CeEEEEEEEcCc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--GYVTGNITISGY 891 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~ 891 (1412)
.++++|+++.|... ++...+|+|||++|++||++||+|+||||||||+++|+|...+ ...+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 47899999888521 1235699999999999999999999999999999999997542 135799999998
Q ss_pred cCCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCchhhhccc
Q 000576 892 PKKQE---T----FARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPE---VDSKTRKMFIEEVMELVELNLLRQALV 959 (1412)
Q Consensus 892 ~~~~~---~----~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~v 959 (1412)
++... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+..+...
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76431 1 1246899999975 5788999999975422110000 111234557889999999975332221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEe
Q 000576 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1038 (1412)
Q Consensus 960 g~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ 1038 (1412)
. ....|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|+++
T Consensus 154 ~--~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 154 S--FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred C--CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1 13579999999999999999999999999999999999999999999999864 899999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000576 1039 LLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1039 ll~~gG~~~y~G~~ 1052 (1412)
+|.+ |++++.|+.
T Consensus 231 vm~~-G~ive~g~~ 243 (330)
T PRK15093 231 VLYC-GQTVETAPS 243 (330)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999986
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=310.83 Aligned_cols=190 Identities=51% Similarity=0.860 Sum_probs=162.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCC--CCCeEEEEEEEcCc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK--TTGYVTGNITISGY 891 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 891 (1412)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. .+ .+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 478999999885210 001246999999999999999999999999999999999976 43 5799999999
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHH
Q 000576 892 PKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 892 ~~~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGq 971 (1412)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8764445677999999998889999999997542110 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 972 rqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|||++|||+|+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998877999999999987567888999999985 7888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=328.65 Aligned_cols=205 Identities=21% Similarity=0.325 Sum_probs=168.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------ccceEEEEcCCCC-
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------PQRTAAYISQHDV- 237 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 237 (1412)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999887 799999998875421 1356999999852
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc-ccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV-CADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~ 316 (1412)
.+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3445799999988643221100 011123456788899963 34444
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
++.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|++++|+.+++.+++|++
T Consensus 143 -----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 -----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ--SGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhCCEE
Confidence 447999999999999999999999999999999999999999999999864 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=319.75 Aligned_cols=209 Identities=27% Similarity=0.375 Sum_probs=175.0
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 241 (1412)
++.+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+... ++.++|++|++..++.
T Consensus 10 ~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 33456999999999999999999999999999999999999987 7999999998765332 4679999999888888
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+|++||+.++....+.. . .......+.+++.+||++..++.+
T Consensus 87 ~t~~~nl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 128 (232)
T cd03300 87 LTVFENIAFGLRLKKLP--K--------------------------------AEIKERVAEALDLVQLEGYANRKP---- 128 (232)
T ss_pred CcHHHHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhcCCh----
Confidence 99999998865332110 0 001123466889999987776554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|+.++|+..++.+++|++++|++
T Consensus 129 -~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~ 206 (232)
T cd03300 129 -SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNK 206 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 356667688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|++++.|+.+++.
T Consensus 207 G~~~~~~~~~~~~ 219 (232)
T cd03300 207 GKIQQIGTPEEIY 219 (232)
T ss_pred CEEEecCCHHHHH
Confidence 9999999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=329.56 Aligned_cols=217 Identities=24% Similarity=0.288 Sum_probs=180.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCe-EEEEEEEcCcc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-VTGNITISGYP 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 892 (1412)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999988741 12358999999999999999999999999999999999765421 13899999988
Q ss_pred CCc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 893 KKQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
... ...++.+||++|++. .++..||+||+.|..... ....++.++.++++++.++|.+..+... +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 653 234567899999974 567899999998764322 2334455567889999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999873 4 57999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|++
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99986
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=327.16 Aligned_cols=208 Identities=25% Similarity=0.333 Sum_probs=171.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCC--
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHD-- 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 236 (1412)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 456999999999999999999999999999999999999887 7999999988764322 35699999985
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-ccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADT 315 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 315 (1412)
.+.+.+||+||+.+....... .. ..+....++.+++.+||+ +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~------------------~~---------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS------------------LD---------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC------------------CC---------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 356789999999875421100 00 001122356688999996 45554
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
. ++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+...+.+++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcE
Confidence 4 4479999999999999999999999999999999999999999999998653 356777789999999999999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000576 396 IILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~ 414 (1412)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=328.98 Aligned_cols=219 Identities=20% Similarity=0.292 Sum_probs=180.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 478999999885210 00124699999999999999999999999999999999997654 479999999876
Q ss_pred Cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 894 KQ----ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 894 ~~----~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ...++.+||++|++. .+...||.|++.|..... .....+.++.++++++.++|.+..+..+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234567999999974 233469999998875432 2233444567899999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~ 1047 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 354 4999999985 8999
Q ss_pred EEcCC
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=322.77 Aligned_cols=209 Identities=26% Similarity=0.361 Sum_probs=174.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 478999998873 23599999999999999999999999999999999997554 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.++|++|++.+++ .||+||+.+....+ . . ....++++++.+++. +..+.. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567899999988776 69999987653321 1 1 123577889999996 444443 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 57788999999985 79999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|++
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=316.95 Aligned_cols=195 Identities=23% Similarity=0.349 Sum_probs=163.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCCHHHHHH
Q 000576 171 GVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 249 (1412)
Q Consensus 171 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~e~l~ 249 (1412)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999887 7999999998754432 357999999988888899999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhh
Q 000576 250 FSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329 (1412)
Q Consensus 250 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGq 329 (1412)
++...... . . .+.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~~-~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-L--T-------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccC-c--c-------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 75421100 0 0 001123567889999987666554 4799999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEec
Q 000576 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408 (1412)
Q Consensus 330 kqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G 408 (1412)
|||++||+||+.+|++++|||||+|||..++..+.+.|+++++. .+.+|+.++|+..++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998653 3567777999999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=358.51 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=175.8
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+|+|+. ..+.+|+|+|++|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999999852 124699999999999999999999999999999999997664 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.+|||+|++.+++ -|++||+.+.. ++.++ +.++++++..++.+.. |+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 457889999999998875 59999997531 22232 3366777777776543 4555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 467999999999999999999999999999999999999999999986 4899999999986 4577999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=322.79 Aligned_cols=219 Identities=26% Similarity=0.304 Sum_probs=175.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998874 2359999999999999999999999999999999999632 21 1379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.+... ..+++.++|++|+..+++ .||+||+.+....+. .......++.++++++.+++.+....... ....
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 134567999999988777 899999987653321 11122334567788888887531111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 57888999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 225 i~~~g~~ 231 (252)
T PRK14239 225 LIEYNDT 231 (252)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=325.20 Aligned_cols=214 Identities=22% Similarity=0.322 Sum_probs=169.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCC--c---CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDE--F---VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~ 237 (1412)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|+++|+++.. . ..++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 346999999999999999999999999999999999998763 1137999999998752 1 12357999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++.+||+||+.++....+..... .+....++++++.+||........
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRL 143 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhh
Confidence 888999999999865322110000 001123456777888753211111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.+|++++|+.+++.+++|+|+
T Consensus 144 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 144 -NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred -ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCCEEE
Confidence 234557999999999999999999999999999999999999999999999853 3677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=354.69 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-hhcccCCCCCCCCCHHHHHHHHHHHHHhh---CCcEE
Q 000576 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-RQALVGLPGVNGLSTEQRKRLTIAVELVA---NPSII 988 (1412)
Q Consensus 913 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~lSgGqrqRl~ia~~L~~---~p~il 988 (1412)
-++||.|.+.|...+. .. ....++++.++|... .+.. .+.||||||||+.||++|+. +|+++
T Consensus 788 l~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~ll 853 (924)
T TIGR00630 788 LDMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLY 853 (924)
T ss_pred hCCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEE
Confidence 3578888887765432 11 124578888998653 2322 35799999999999999997 59999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe-----cCcEEEEEcCC
Q 000576 989 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-----RGGQEIYVGPL 1052 (1412)
Q Consensus 989 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~-----~gG~~~y~G~~ 1052 (1412)
+|||||+|||+.+...+++.|+++.++|.|||+++|++. +.+.+|+++.|. +||++++.|++
T Consensus 854 ILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 854 ILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 999999999999999999999999888999999999986 346799999994 57999999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=328.14 Aligned_cols=218 Identities=24% Similarity=0.325 Sum_probs=174.1
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC--------ccceEEEEcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV--------PQRTAAYISQH 235 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~ 235 (1412)
+++++|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|+++.... .++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 3456999999999999999999999999999999999999875223699999998774321 13568999999
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
+.+++.+||+||+.++..... . ..... .... ..+....++.+++.+||++..|.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGST--P-------FWRTC--FSWF---------------TREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred cccccCCcHHHHHHhhhcccc--c-------chhhh--cccc---------------cHHHHHHHHHHHHHcCCHHHHhC
Confidence 888889999999987642100 0 00000 0000 00112345678999999876665
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.++ .|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++. .+++|+.++|+.+++.+++|+
T Consensus 149 ~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 149 RVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred Ccc-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 544 69999999999999999999999999999999999999999999998653 357777789999999999999
Q ss_pred EEEEeCCeEEEecChhhH
Q 000576 396 IILISDGQIVYQGPREHV 413 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~ 413 (1412)
+++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.36 Aligned_cols=212 Identities=24% Similarity=0.381 Sum_probs=173.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIG 240 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 240 (1412)
+++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 94 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG 94 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC
Confidence 3456999999999999999999999999999999999999886 7999999998754322 356999999988888
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+||+||+.++..-... .. .... ......++.+++.+||++..++.
T Consensus 95 ~~tv~~~~~~~~~~~~~--~~----------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~---- 140 (265)
T PRK10253 95 DITVQELVARGRYPHQP--LF----------------TRWR------------KEDEEAVTKAMQATGITHLADQS---- 140 (265)
T ss_pred CCcHHHHHHhCcccccc--cc----------------cCCC------------HHHHHHHHHHHHHcCCHHHhcCC----
Confidence 89999999875210000 00 0000 00112356788899997665554
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
++.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|++++|+
T Consensus 141 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~ 218 (265)
T PRK10253 141 -VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALR 218 (265)
T ss_pred -cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (265)
T PRK10253 219 EGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=326.64 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=169.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC---ccceEEEEcCCCC-cCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGEM 242 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 242 (1412)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999887 799999999875432 2357999999864 67888
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|+++|+.|.....+.. . .+....++.+++.+|+.+..|+.+
T Consensus 100 ~v~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y--------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 0 001123456789999987666544
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999764 235667778888888875 9999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=324.02 Aligned_cols=219 Identities=20% Similarity=0.266 Sum_probs=176.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999998874 2359999999999999999999999999999999999654 21 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .....+.++.++++++.+++.+....... ....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87642 2345679999999888875 99999987643321 11223344567888999888542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999987 57789999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|++
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=319.73 Aligned_cols=211 Identities=22% Similarity=0.296 Sum_probs=176.0
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++||+++++. + ..|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 578999988741 1 1389999999999999999999999999999997654 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..+..+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12456899999999999999999997653211 111 1233456889999999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999987 57788999999985 899999885
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.75 Aligned_cols=219 Identities=21% Similarity=0.302 Sum_probs=175.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--C-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--G-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999998874 13599999999999999999999999999999999996432 1 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ....+.++.++++++.+++.+........ ...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKK-SAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhc-CCC
Confidence 87642 134567899999988777 8999999886543211 12233445678888888875311111111 235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999854 899999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=329.71 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=176.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++... .....+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 588999999884210 0013599999999999999999999999999999999997654 479999999875
Q ss_pred Cc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCC
Q 000576 894 KQ--------ETFARISGYCEQNDIH-SPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPG 963 (1412)
Q Consensus 894 ~~--------~~~~~~~~yv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~ 963 (1412)
.. ..+++.++|++|++.. ....|++||+.|..... ....++..+.++++++.+++. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345678999998632 23469999998764322 122334445678899999984 455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3479999999999999999999999999999999999999999999998754 899999999987 57889999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=319.13 Aligned_cols=203 Identities=32% Similarity=0.525 Sum_probs=164.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD---SSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 241 (1412)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 65 79999999887543345679999999888999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHH-HHHHhCCCccccccccCc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDY-ILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-il~~lgL~~~~dt~vg~~ 320 (1412)
+||+||+.|+......... ... ......+. .++.+++++..++.
T Consensus 96 ~tv~enl~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 140 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS---SDA----------------------------IRKKRVEDVLLRDLALTRIGGNL---- 140 (226)
T ss_pred CcHHHHHHHHHHhhccccc---chH----------------------------HHHHHHHHHHHHhhcchhhhccc----
Confidence 9999999987543211000 000 00011233 78888887655544
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hhHHhhcCeEEEE
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPA-PEAYDLFDDIILI 399 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~-~~~~~~~D~vivL 399 (1412)
++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.++++.+ . +.+++.++|+. .++.+++|++++|
T Consensus 141 -~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 141 -VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-R-NRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred -ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCCCHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999764 2 45666677776 6899999999999
Q ss_pred eCCeEEEec
Q 000576 400 SDGQIVYQG 408 (1412)
Q Consensus 400 ~~G~iv~~G 408 (1412)
++|+++++|
T Consensus 218 ~~G~i~~~g 226 (226)
T cd03234 218 SSGEIVYSG 226 (226)
T ss_pred eCCEEEecC
Confidence 999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=322.63 Aligned_cols=219 Identities=19% Similarity=0.264 Sum_probs=175.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcCc
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISGY 891 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g~ 891 (1412)
-+++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46788888773 2469999999999999999999999999999999999753 11 24799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 892 PKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 892 ~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
++.. ...++.++|++|++.+++. |++||+.+....+.. .......++.++++++.+++.+........ ....
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245678999999888875 999999876433311 112233445678899999986522111111 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999987 57788999999985 799
Q ss_pred EEEcCC
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 ~y~G~~ 1052 (1412)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=322.05 Aligned_cols=218 Identities=21% Similarity=0.265 Sum_probs=176.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478999998874 235999999999999999999999999999999999965421 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGV 964 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~ 964 (1412)
.++.. ...++.++|++|++.+++ .|++||+.|....... ....+.++.++++++.+++.+ +.+.. . ...
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~ 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-K-KSA 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCc
Confidence 87642 123567899999988887 8999999876543211 122334456788899998742 11111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G 222 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-G 222 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 689999999986 57888999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 223 ~i~~~~~~ 230 (251)
T PRK14270 223 DLIEFNKT 230 (251)
T ss_pred eEEEeCCH
Confidence 99999986
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=286.30 Aligned_cols=213 Identities=24% Similarity=0.365 Sum_probs=179.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.|+.+++++.+... .....||++|++.|++||-+||+|||||||||||-+|+|...+ .+|+|.+.|++.
T Consensus 6 ii~~~~l~ktvg~~---------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQG---------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCC---------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcch
Confidence 46788888776432 3567899999999999999999999999999999999997654 479999999986
Q ss_pred Cc---c----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 894 KQ---E----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 894 ~~---~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
.. + -..+.+|+|+|.-.+.|++|..||+.....++.... .+......+.++.+||.+-.+... ..
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQ 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cc
Confidence 43 1 234679999999999999999999998888775322 222344677899999987666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
|||||+|||+||||++..|+|||.||||-+||..|...|.+.+=.+. +.|.|.|++||||. +...|||.+-|.. |+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~ 223 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GR 223 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ce
Confidence 99999999999999999999999999999999999999999998876 45999999999986 6788999999985 78
Q ss_pred EEE
Q 000576 1046 EIY 1048 (1412)
Q Consensus 1046 ~~y 1048 (1412)
++.
T Consensus 224 l~~ 226 (228)
T COG4181 224 LVE 226 (228)
T ss_pred ecc
Confidence 763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.82 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=172.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 241 (1412)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 346999999999999999999999999999999999999886 7999999987754322 3569999998888889
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
+||+||+.++..... ... +.. . ......++.+++.+||++..++.++
T Consensus 100 ~tv~e~l~~~~~~~~--~~~-------------~~~--~-------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 146 (265)
T PRK10575 100 MTVRELVAIGRYPWH--GAL-------------GRF--G-------------AADREKVEEAISLVGLKPLAHRLVD--- 146 (265)
T ss_pred ccHHHHHHhCccccc--ccc-------------cCC--C-------------HHHHHHHHHHHHHcCCHHHhcCCcc---
Confidence 999999987531100 000 000 0 0011235678889999876666554
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|+|++|++
T Consensus 147 --~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 147 --SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRG 223 (265)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 356677789999999999999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|++++.|+.+++.
T Consensus 224 G~i~~~~~~~~~~ 236 (265)
T PRK10575 224 GEMIAQGTPAELM 236 (265)
T ss_pred CeEEEecCHHHhc
Confidence 9999999887763
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.75 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=176.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999998874 235899999999999999999999999999999999965421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++ .|++||+.+...... .......++.+++.++.+++.+..+.... ....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChh
Confidence 87642 134567999999988877 899999987654321 11222334557888898888542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999987 57788999999986 79
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14262 223 LIEYGPT 229 (250)
T ss_pred EEEecCH
Confidence 9998875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=334.78 Aligned_cols=211 Identities=24% Similarity=0.374 Sum_probs=178.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+++|+.+ ..++|+|+|+++++||++||+|+||||||||++.|+|...+ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 79999999999743 34699999999999999999999999999999999996554 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcc-------cCCCC
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL-------VGLPG 963 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------vg~~~ 963 (1412)
.. ...++.++++.|...++ .-|+|+||..+. ++.++ +.+.++++.+||.+..... +|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 34667789999966555 569999997642 33343 3478899999998765443 444 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
++.||||||||++|||+|++|.++++|||||.|||+.|++.|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 568999999999999999999999999999999999999999999998764 899999999976 4688999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 899999976
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=319.24 Aligned_cols=204 Identities=27% Similarity=0.445 Sum_probs=172.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCCHHH
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRE 246 (1412)
Q Consensus 168 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~e 246 (1412)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999987 7999999998765322 467999999988888999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCC
Q 000576 247 TLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326 (1412)
Q Consensus 247 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LS 326 (1412)
|+.++....+... .+....++.+++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221100 001123456788899987776655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEE
Q 000576 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVY 406 (1412)
Q Consensus 327 GGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~ 406 (1412)
||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++.. .+++++.++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE-FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 25677778999999999999999999999999
Q ss_pred ecChhhHH
Q 000576 407 QGPREHVL 414 (1412)
Q Consensus 407 ~G~~~~~~ 414 (1412)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=326.05 Aligned_cols=211 Identities=25% Similarity=0.390 Sum_probs=172.3
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIG 240 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 240 (1412)
+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPE 89 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCC
Confidence 3456999999999999999999999999999999999999886 7999999987654321 356999999987788
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+||.||+.++..... ..+. ... .+....++.+++.+||++..++.+
T Consensus 90 ~~tv~~~i~~~~~~~~--~~~~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (255)
T PRK11231 90 GITVRELVAYGRSPWL--SLWG----------------RLS------------AEDNARVNQAMEQTRINHLADRRL--- 136 (255)
T ss_pred CccHHHHHHhccchhh--hhcc----------------CCC------------HHHHHHHHHHHHHcCCHHHHcCCc---
Confidence 8999999988631000 0000 000 001123566888899987666554
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
..|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. .+++++.++|+..++.+++|++++|+
T Consensus 137 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l~ 212 (255)
T PRK11231 137 --TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLA 212 (255)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|+++..|+.+++.
T Consensus 213 ~G~i~~~~~~~~~~ 226 (255)
T PRK11231 213 NGHVMAQGTPEEVM 226 (255)
T ss_pred CCeEEEEcCHHHhc
Confidence 99999999987763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=332.19 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=172.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CceeEEEECCccCCCcCc-------cceEEEEcCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RLYGRVTYNGHNMDEFVP-------QRTAAYISQHD 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 236 (1412)
...+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3569999999999999999999999999999999999986421 137999999998765432 13699999986
Q ss_pred C--cCCCCCHHHHHHHhhhhcCC-CchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 237 V--HIGEMTVRETLAFSARCQGV-GSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 237 ~--~~~~lTV~e~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
. +.+.+||.+++.+....... +..+ . . ..+....+..+|+.+||++..
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~--~-----------~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWW----------------Q--R-----------FGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhcccccc----------------c--c-----------HHHHHHHHHHHHHHCCCCChH
Confidence 4 57889999999764221000 0000 0 0 001123456789999997532
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
+ +-++.+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+. .+.++++++|+...+.+++
T Consensus 150 ~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 150 D--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWA 226 (330)
T ss_pred H--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhC
Confidence 1 113445689999999999999999999999999999999999999999999998653 3677888999999999999
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000576 394 DDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~ 414 (1412)
|+|++|++|+|++.|+.+++.
T Consensus 227 dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.18 Aligned_cols=212 Identities=27% Similarity=0.403 Sum_probs=178.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.+. + .+|+|+|++|+|||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~------------~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK------------E--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC------------C--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 35778887763 1 279999999999999999999999999999999997654 4799999998765
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 895 QE-TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~~-~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.. ..++.++|++|++.+++.+|+.||+.+..... .....+.++.+.++++.+++.+..+..+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 32 22457899999999999999999998764332 1223344456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 899998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=323.15 Aligned_cols=213 Identities=20% Similarity=0.281 Sum_probs=169.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|+..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4569999999999999999999999999999999999986 3211379999999887432 12467999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++.+||+||+.++.+..+.... .+....++.+++.+|+....+...
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL 142 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh
Confidence 88889999999876432110000 001123456788888864221111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|++++|+.+++.+++|+++
T Consensus 143 -~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T PRK14256 143 -KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNMQQAARVSDYTA 218 (252)
T ss_pred -hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCHHHHHhhCCEEE
Confidence 234557999999999999999999999999999999999999999999999853 3567778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+.+++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 219 FFYMGDLVECGETKKIF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.78 Aligned_cols=221 Identities=21% Similarity=0.261 Sum_probs=178.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ...+|+|+|+++++||+++|+|+||||||||+++|+|...+. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 589999999874 135899999999999999999999999999999999975432 1369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|+..+++ .|++||+.+....... ....+..+.++++++.+++.+..+...+. ...
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567999999988887 8999999876433211 12233345678899999885422222222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecC-
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRG- 1043 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g- 1043 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999987 688899999999853
Q ss_pred ---cEEEEEcCC
Q 000576 1044 ---GQEIYVGPL 1052 (1412)
Q Consensus 1044 ---G~~~y~G~~ 1052 (1412)
|++++.|++
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999986
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=325.03 Aligned_cols=224 Identities=19% Similarity=0.259 Sum_probs=179.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||+++|+.+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 3789999998842100 0000124699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCCCC
Q 000576 894 KQE---TFARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVNGL 967 (1412)
Q Consensus 894 ~~~---~~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~l 967 (1412)
... ..++.++|++|++. +.+.+|+.|++.+....+. .....+..+.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 421 22356899999875 5678899999987654332 122334445688999999994 444443 3479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 968 SgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
|||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999987 57778999999985 899
Q ss_pred EEEcCC
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 ~y~G~~ 1052 (1412)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 988875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=327.42 Aligned_cols=209 Identities=23% Similarity=0.328 Sum_probs=171.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 241 (1412)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 358999999999999999999999999999999999998862224999999998764322 357999999863 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
.||+||+.|+.+..+.. .++....++.+++.+||++..++.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~---- 141 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP---- 141 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc----
Confidence 99999998864322110 0011224566889999987666544
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..+|++++|++
T Consensus 142 -~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 579999999999999999999999999999999999999999999998653 356777788888887 57999999999
Q ss_pred CeEEEecChhhHHH
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~iv~~G~~~~~~~ 415 (1412)
|++++.|+++++.+
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=317.77 Aligned_cols=197 Identities=23% Similarity=0.386 Sum_probs=163.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence 3456999999999999999999999999999999999999887 79999999887421 113579999999888
Q ss_pred CCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 239 IGEMTVRETLAFSAR-CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
++.+||+||+.++.. .++.. . .+....++.+++.+|+++..++.+
T Consensus 88 ~~~~t~~e~l~~~~~~~~~~~-----------------------~-----------~~~~~~~~~~l~~~~l~~~~~~~~ 133 (213)
T cd03262 88 FPHLTVLENITLAPIKVKGMS-----------------------K-----------AEAEERALELLEKVGLADKADAYP 133 (213)
T ss_pred CCCCcHHHHHHhHHHHhcCCC-----------------------H-----------HHHHHHHHHHHHHcCCHhHhhhCc
Confidence 888999999988642 11100 0 011123456788899987666554
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.+++|+++
T Consensus 134 -----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~~~~~~~~d~i~ 206 (213)
T cd03262 134 -----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVI 206 (213)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999999865 35667778999999999999999
Q ss_pred EEeCCeE
Q 000576 398 LISDGQI 404 (1412)
Q Consensus 398 vL~~G~i 404 (1412)
+|++|++
T Consensus 207 ~l~~g~i 213 (213)
T cd03262 207 FMDDGRI 213 (213)
T ss_pred EEeCCcC
Confidence 9999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=321.51 Aligned_cols=215 Identities=17% Similarity=0.264 Sum_probs=169.7
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHI 239 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 239 (1412)
++++.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|+++|+++.+... ++.++|++|++.++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 344569999999999999999999999999999999999975311237999999998765322 35799999987777
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+ .||+||+.++...++... .. ......++.+++.+||........ +
T Consensus 92 ~-~tv~eni~~~~~~~~~~~-------------------~~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 137 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIK-------------------NK-------------DEEEALVVDCLQKVGLFEEVKDKL-K 137 (246)
T ss_pred c-ccHHHHhhhHHhhcCccc-------------------Ch-------------HHHHHHHHHHHHHcCCChhhhHHh-c
Confidence 6 699999998643321100 00 001123456788888853221111 2
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+..+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++.+++|++++|
T Consensus 138 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEE
Confidence 34567999999999999999999999999999999999999999999998742 567777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 215 HLGELIEFGESKEFF 229 (246)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=324.75 Aligned_cols=210 Identities=28% Similarity=0.432 Sum_probs=172.3
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIG 240 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 240 (1412)
+++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCC
Confidence 3456999999999999999999999999999999999999887 7999999998765432 346999999987788
Q ss_pred CCCHHHHHHHhhh-hcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 241 EMTVRETLAFSAR-CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 241 ~lTV~e~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
.+||+||+.++.. .... + . .+ ..+....++.+++.+|+.+..++.+
T Consensus 89 ~~tv~e~l~~~~~~~~~~---~-------------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (256)
T TIGR03873 89 PLTVRDVVALGRIPHRSL---W-------------A-GD--------------SPHDAAVVDRALARTELSHLADRDM-- 135 (256)
T ss_pred CCCHHHHHHhcchhhhhh---c-------------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 8999999988521 0000 0 0 00 0011123466788899976666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+++|++++|+.+++.+++|+|++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 136 ---STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999854 3567777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|+++..|+.+++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 211 DGGRVVAAGPPREVL 225 (256)
T ss_pred eCCCEEEecCHHHhh
Confidence 999999999987763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=314.02 Aligned_cols=189 Identities=24% Similarity=0.380 Sum_probs=160.5
Q ss_pred eeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC---c----ccccceEEEeccCCCCC
Q 000576 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK---Q----ETFARISGYCEQNDIHS 912 (1412)
Q Consensus 840 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~~yv~Q~~~~~ 912 (1412)
+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999997654 4799999998743 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000576 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992 (1412)
Q Consensus 913 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDE 992 (1412)
+.+|++||+.+..... .....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 1223344556889999999987666553 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 993 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 993 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
||+|||+.+...+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999986 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.84 Aligned_cols=219 Identities=23% Similarity=0.257 Sum_probs=175.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478999998874 245999999999999999999999999999999999975431 2479999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 891 YPKKQ----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 891 ~~~~~----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
.++.. ...++.++|++|++.+++ .||.||+.+...... .......++.++++++.+++.+........ ....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87531 234567999999988887 899999987643221 111223345577788888875321111111 1357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 689999999986 57888999999985 899
Q ss_pred EEEcCC
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 ~y~G~~ 1052 (1412)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=322.44 Aligned_cols=212 Identities=23% Similarity=0.337 Sum_probs=166.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 3469999999999999999999999999999999999853 4212379999999887431 12457999999877
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
.++ +||+||+.++....+... + ......++.+++.+|+.....+..
T Consensus 97 ~~~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLKGIKD--K-------------------------------QVLDEAVEKSLKGASIWDEVKDRL 142 (252)
T ss_pred cCc-CcHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHHHcCCchhHHHHH
Confidence 666 899999998653322100 0 001122345677777643211111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +++|+.++|+.+++.+++|+++
T Consensus 143 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~ 218 (252)
T PRK14239 143 -HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSMQQASRISDRTG 218 (252)
T ss_pred -hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCHHHHHHhCCEEE
Confidence 234557999999999999999999999999999999999999999999999743 3567778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+.+++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.35 Aligned_cols=220 Identities=21% Similarity=0.262 Sum_probs=177.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---CeEEEEEEEc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT---GYVTGNITIS 889 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 889 (1412)
..++++|+++.++ ++.+|+|+|+.|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3689999999874 23589999999999999999999999999999999997542 1257999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCC
Q 000576 890 GYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964 (1412)
Q Consensus 890 g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 964 (1412)
|.+... ..+++.++|++|+..+++. |++||+.+...... .......++.++++++.+++.+......+. ..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 987642 1345679999999888876 99999987654321 111223345678888988885421111111 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999976 799999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
+++..|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 99999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.19 Aligned_cols=220 Identities=21% Similarity=0.285 Sum_probs=177.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC-e--EEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG-Y--VTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 588999998874 235999999999999999999999999999999999965432 1 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++ .||+||+.+....+. .....+.++.++++++.+++......... ....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLN-KSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87632 234557999999988887 899999987654332 11223334567788898888421111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec---
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR--- 1042 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~--- 1042 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+.
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDES 227 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999865 699999999987 68889999999973
Q ss_pred -CcEEEEEcCC
Q 000576 1043 -GGQEIYVGPL 1052 (1412)
Q Consensus 1043 -gG~~~y~G~~ 1052 (1412)
.|++++.|+.
T Consensus 228 ~~G~i~~~~~~ 238 (259)
T PRK14260 228 RIGQMVEFGVT 238 (259)
T ss_pred CCceEEEeCCH
Confidence 4899999986
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.37 Aligned_cols=220 Identities=24% Similarity=0.274 Sum_probs=175.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCe---EEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY---VTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|+.|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478899998874 2469999999999999999999999999999999999754322 379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++......... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 147 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLK-TPAT 147 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhc-CCcc
Confidence 87642 1345678999999999999999999987643321 11222334456667777766421111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999987 57778999999985 79
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14272 225 LVEHGPT 231 (252)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.89 Aligned_cols=191 Identities=23% Similarity=0.386 Sum_probs=162.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000576 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-------ETFARISGYCEQNDIHSPQVTV 917 (1412)
Q Consensus 845 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~yv~Q~~~~~~~lTv 917 (1412)
|+|+++++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999997654 47999999987531 1235678999999988899999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000576 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997 (1412)
Q Consensus 918 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgL 997 (1412)
+||+.+..... .....++.++++++.+++.+..+.. ...||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223345678899999998765544 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 998 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 998 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 47788999999985 7888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=335.76 Aligned_cols=190 Identities=24% Similarity=0.380 Sum_probs=166.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000576 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-------ETFARISGYCEQNDIHSPQVTV 917 (1412)
Q Consensus 845 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~yv~Q~~~~~~~lTv 917 (1412)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999997654 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000576 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997 (1412)
Q Consensus 918 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgL 997 (1412)
+||+.|... ...++.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999987776653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 998 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 998 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 68889999999985 899999986
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=324.06 Aligned_cols=213 Identities=21% Similarity=0.321 Sum_probs=168.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++++|+|+|++|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 3469999999999999999999999999999999999986410 1379999999886421 12357999999988
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++.+||+||+.++....+...+ +.....++.+++.+||........
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL 142 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh
Confidence 88899999999886532210000 001123456788888742111111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +++|+.++|+..++.+++|+++
T Consensus 143 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 143 -DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEE
Confidence 234457999999999999999999999999999999999999999999999843 3567778999999999999999
Q ss_pred EEe------CCeEEEecChhhHH
Q 000576 398 LIS------DGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~------~G~iv~~G~~~~~~ 414 (1412)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999988774
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=301.94 Aligned_cols=216 Identities=21% Similarity=0.332 Sum_probs=192.4
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCC
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHD 236 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d 236 (1412)
+.++++++++.+++|+||.++||++.+++|||||||||.+++|+|++.|+ +|+|+++|.+++... ..+|||.|.+.
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEER 81 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEER 81 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhh
Confidence 35677889999999999999999999999999999999999999999997 899999999886543 35799999999
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
-+++.+||.|.|.|-++++|+.. ++.....+.+|+.+++......+
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~k 127 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKK 127 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccch
Confidence 99999999999999999988632 12344567889999998766544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+..||-|.+|++.+-.+++++|++++||||+|||||.++..+-+.+.++.. .|+||+..+|.++.+.++||++
T Consensus 128 -----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 128 -----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred -----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhh
Confidence 457999999999999999999999999999999999999999999999864 5788888999999999999999
Q ss_pred EEEeCCeEEEecChhhHHHHH
Q 000576 397 ILISDGQIVYQGPREHVLEFF 417 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~~~f 417 (1412)
++|++|+.|.+|+.+++..-|
T Consensus 201 lmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 201 LMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred heecCCceEEeccHHHHHHhc
Confidence 999999999999999998644
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=317.59 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=162.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEcCCCCcC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDVHI 239 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 239 (1412)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999887 7999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 319 (1412)
+.+||+||+.+.....+... .+....++.+++.+||++..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 88999999988643221000 011223566889999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 355666688888877 559999999
Q ss_pred eCCeEEEe
Q 000576 400 SDGQIVYQ 407 (1412)
Q Consensus 400 ~~G~iv~~ 407 (1412)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=322.57 Aligned_cols=212 Identities=20% Similarity=0.287 Sum_probs=168.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcC---CCCCCCceeEEEECCccCCCcC-----ccceEEEEcCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGK---LDSSLRLYGRVTYNGHNMDEFV-----PQRTAAYISQH 235 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 235 (1412)
+.+++|+|+|+++++|++++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|+
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQR 92 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecC
Confidence 345699999999999999999999999999999999997 3331 13799999999875421 13579999998
Q ss_pred CCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccc
Q 000576 236 DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315 (1412)
Q Consensus 236 d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 315 (1412)
+..++ .||+||+.++.+..+.... ......++++++.+||.+..++
T Consensus 93 ~~~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 138 (250)
T PRK14245 93 PNPFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKD 138 (250)
T ss_pred CccCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhh
Confidence 77776 6999999886533211000 0011234667888888653222
Q ss_pred cccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~ 395 (1412)
.. ++.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|+
T Consensus 139 ~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~ 214 (250)
T PRK14245 139 KL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK---DYTIVIVTHNMQQAARVSDK 214 (250)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhCCE
Confidence 22 234557999999999999999999999999999999999999999999999742 46677789999999999999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000576 396 IILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 396 vivL~~G~iv~~G~~~~~~ 414 (1412)
+++|++|++++.|+++++.
T Consensus 215 v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 215 TAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=317.87 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=168.1
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC----CCCceeEEEECCccCCCcCcc-ceEEEEcCCCC--cCC
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS----SLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDV--HIG 240 (1412)
Q Consensus 168 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~--~~~ 240 (1412)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++.....+ +.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 79999999987654322 57999999864 456
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 320 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 320 (1412)
.+|+.|++.+.....+.. . .+....++.+++.+||++. +...++
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~--~~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDP--EEVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCch--HHHHhC
Confidence 789999998754321100 0 0112235678899999742 011133
Q ss_pred ccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEe
Q 000576 321 MIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400 (1412)
Q Consensus 321 ~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~ 400 (1412)
.+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++. .+++|+.++|+.+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 44579999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000576 401 DGQIVYQGPREHVL 414 (1412)
Q Consensus 401 ~G~iv~~G~~~~~~ 414 (1412)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=318.46 Aligned_cols=202 Identities=26% Similarity=0.346 Sum_probs=166.7
Q ss_pred eeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCccceEEEEcCCCCcCCCCCHHHHH
Q 000576 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 248 (1412)
Q Consensus 169 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~e~l 248 (1412)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999887 7999999998765332 348999998888889999999
Q ss_pred HHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChh
Q 000576 249 AFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328 (1412)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGG 328 (1412)
.++....... . + ..+....++.+++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--L-------------------S-----------KSERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--C-------------------C-----------HHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8863210000 0 0 00111234668889999876666554 69999
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEec
Q 000576 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQG 408 (1412)
Q Consensus 329 qkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G 408 (1412)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|+.++|+.+++.+++|++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998653 3567777899999999999999999999999988
Q ss_pred ChhhH
Q 000576 409 PREHV 413 (1412)
Q Consensus 409 ~~~~~ 413 (1412)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.47 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=166.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
.++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 359999999999999999999999999999999999986 2111379999999887421 123579999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ +||+||+.++.+....... .+....++.+++.+|+........
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 150 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLSR---------------------------------AEMDERVEWALTKAALWNEVKDKL- 150 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCChhhHHHH-
Confidence 76 8999999886532110000 001123456788888743211111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++....||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. +++|+.++|+..++.+++|++++
T Consensus 151 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 151 HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNMQQAARCSDYTAF 227 (260)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999999842 45677789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++..|+.+++.
T Consensus 228 l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 228 MYLGELIEFGNTDTIF 243 (260)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=329.92 Aligned_cols=205 Identities=19% Similarity=0.301 Sum_probs=167.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCC----c----CccceEEEEcCCCC-
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE----F----VPQRTAAYISQHDV- 237 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 237 (1412)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999999886 7999999987642 1 12357999999863
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 316 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 316 (1412)
.+...||+||+.|+....+... .+....++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 2345699999998643211100 00112345678888995 445544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+++|++
T Consensus 148 -----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 -----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred -----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 3479999999999999999999999999999999999999999999998653 3567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=324.62 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=167.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 45999999999999999999999999999999999998741 01379999999887531 123579999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ .||+||+.++.+..+.... + .+....++.+++.+||.+......
T Consensus 112 ~~-~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FP-KSIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CC-CcHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 76 4999999987543211000 0 001123456788888864221111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.+|++++|+.+++.+++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEE
Confidence 233557999999999999999999999999999999999999999999999853 35677789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=364.57 Aligned_cols=210 Identities=24% Similarity=0.398 Sum_probs=175.2
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||++.+. +++.+|+|+|++|+|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999997553 1246899999999999999999999999999999999976 4 37999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-------hhcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 962 (1412)
+.+ ..+++.++||+|++.++. -|++||+.++. ++.++ +.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998876 49999998752 23333 335667777666543 35667755
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
| .+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999885 5899999999985 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 899998873
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=355.12 Aligned_cols=211 Identities=24% Similarity=0.377 Sum_probs=176.3
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+|+|+. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 36999999999851 23589999999999999999999999999999999997664 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.+|||+|++.+++. |++||+.+.. .++.++ +.++++++..++.+.. |+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~----~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGA----KENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccC----CCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 4567889999999988765 9999997642 112232 3356777777765432 5566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999985 4799999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.35 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=173.3
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 242 (1412)
+.+++|+|+|+++.+||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 3456999999999999999999999999999999999999886 7999999998764333 35799999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++||+.+..+..+... .......+.+++.+++....|+.+
T Consensus 88 t~~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 128 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP----- 128 (237)
T ss_pred cHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----
Confidence 99999988654321100 000112456788889876665544
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++.. .+.+++.++|..+++.+++|++++|++|
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 469999999999999999999999999999999999999999999987652 3566777889999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
++++.|+.+++.
T Consensus 208 ~i~~~~~~~~~~ 219 (237)
T TIGR00968 208 KIEQIGSPDEVY 219 (237)
T ss_pred EEEEecCHHHHH
Confidence 999999988774
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=360.59 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=177.8
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+|+|+. ..+.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999999852 124699999999999999999999999999999999997665 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-------hhcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 962 (1412)
.++ ..+++.++|++|++.+++ -|++||+.++. +.+.++ +.++++++..++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 456788999999998886 59999997641 112232 346777777776543 35566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
.++||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4799999999985 5778999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.05 Aligned_cols=201 Identities=24% Similarity=0.416 Sum_probs=169.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-cceEEEEcCCCCcCCCCCHHHHHH
Q 000576 171 GVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQHDVHIGEMTVRETLA 249 (1412)
Q Consensus 171 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~e~l~ 249 (1412)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999887 7999999998754322 357999999988888899999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhh
Q 000576 250 FSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329 (1412)
Q Consensus 250 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGq 329 (1412)
++... ... .. ......++.+++.+||++..|+.+. .|||||
T Consensus 94 ~~~~~-~~~--~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--LN-------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccC--CC-------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 000 00 0011235668899999876666554 699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEEecC
Q 000576 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409 (1412)
Q Consensus 330 kqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~~G~ 409 (1412)
|||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 35667778999999999999999999999999999
Q ss_pred hhhHH
Q 000576 410 REHVL 414 (1412)
Q Consensus 410 ~~~~~ 414 (1412)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.03 Aligned_cols=214 Identities=20% Similarity=0.264 Sum_probs=174.9
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC--eEEEEEEEcC
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG--YVTGNITISG 890 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g 890 (1412)
..++++|++++++ +.+|+|+|+++++||+++|+|+||||||||+++|+|...+. ..+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 4689999998772 24899999999999999999999999999999999976541 1579999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh---hhcccCCCCC
Q 000576 891 YPKKQETF-ARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL---RQALVGLPGV 964 (1412)
Q Consensus 891 ~~~~~~~~-~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~vg~~~~ 964 (1412)
.++..... ++.++|++|++. +.+..|+.+++.+.+..... .. .++.++++++.+++.+. .+.. .
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87653322 356999999974 45678999988664432211 11 22557889999999762 2332 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 899999885
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.16 Aligned_cols=211 Identities=20% Similarity=0.302 Sum_probs=168.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 45999999999999999999999999999999999998641 12379999999987532 124579999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ .||+||+.++.+..+...+ ++....++.+++.+||.++.+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 76 6999999986432211000 011123456788888864332222
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ +.+|+.++|+.+++.+++|++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCEEEE
Confidence 345668999999999999999999999999999999999999999999999742 46777788999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=335.70 Aligned_cols=194 Identities=25% Similarity=0.391 Sum_probs=168.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000576 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-------ETFARISGYCEQNDIHSPQVTV 917 (1412)
Q Consensus 845 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~yv~Q~~~~~~~lTv 917 (1412)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999997654 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000576 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997 (1412)
Q Consensus 918 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgL 997 (1412)
+||+.|..... ...+.++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12234456889999999987776653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 998 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 998 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+.++..+.+.|+++.++ |+|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999987 67888999999985 899999985
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.98 Aligned_cols=212 Identities=20% Similarity=0.317 Sum_probs=167.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCcC-----ccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEFV-----PQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 356999999999999999999999999999999999998651 113799999999875321 2356999999887
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ +||+||+.|+....+.... .+....++.+++.+||........
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 141 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL 141 (251)
T ss_pred cCC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh
Confidence 776 8999999986543221000 001122445677887742111111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+..++.+++|+++
T Consensus 142 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~ 217 (251)
T PRK14270 142 -KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTA 217 (251)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEE
Confidence 234557999999999999999999999999999999999999999999999754 3 567778899999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 218 FFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=388.43 Aligned_cols=213 Identities=22% Similarity=0.352 Sum_probs=170.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------------
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--------------------------------------- 206 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------------------- 206 (1412)
.++|+|+|++|+||+.+||+||+|||||||+++|+|+++|+
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHH
Q 000576 207 ------------LRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271 (1412)
Q Consensus 207 ------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e 271 (1412)
...+|+|++||+++.+... ++.++||+|++.+ ++.||||||.++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~------------------ 1321 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKE------------------ 1321 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCC------------------
Confidence 0138999999999987654 5789999997654 57899999999732
Q ss_pred HHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCC
Q 000576 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEI 351 (1412)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEP 351 (1412)
+.+.++..+++... ...|.+. .|++.+||.||+++. .||||||||++|||||+++|+||+||||
T Consensus 1322 -------~at~eeI~~A~k~A-----~l~~fI~---~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1322 -------DATREDVKRACKFA-----AIDEFIE---SLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred -------CCCHHHHHHHHHHc-----CCHHHHH---hCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 11112222222111 1123332 489999999998766 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC----CeEE-EecChhhHHH
Q 000576 352 STGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD----GQIV-YQGPREHVLE 415 (1412)
Q Consensus 352 tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~----G~iv-~~G~~~~~~~ 415 (1412)
||+||+.++..|.+.|+++.. .++.|+|+++|... ..+.+|+|++|++ |+++ ++|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~-~~~~TvIiIaHRls-ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKD-KADKTIITIAHRIA-SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhc-cCCCEEEEEechHH-HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999998642 23456666777774 4577999999999 9955 8999999863
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=324.01 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=170.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCC--cCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDV--HIG 240 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 240 (1412)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +.+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 7999999988753221 246999999864 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-ccccccccC
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGD 319 (1412)
Q Consensus 241 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 319 (1412)
.+||.|++.+..+...... ..+....++.+++.+||+ +..++.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------------------------------PEQREKQIIETLRQVGLLPDHASYY--- 146 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCChHHHhcC---
Confidence 8899999988643221000 001112356688999994 444444
Q ss_pred cccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL 399 (1412)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 147 --PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 3479999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred eCCeEEEecChhhHH
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~iv~~G~~~~~~ 414 (1412)
++|++++.|+++++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.59 Aligned_cols=211 Identities=19% Similarity=0.307 Sum_probs=166.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|+++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 459999999999999999999999999999999999986 3212379999999987421 123579999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++. ||+||+.|+.+..+.... ++....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-
Confidence 765 999999886432211000 001122455677778753211111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. +.+++.++|+.+++.+++|++++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999999743 45677789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=352.83 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=173.8
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++|+||+|+|+.. +++.+|+|+|++|+|||++||+||||||||||+++|+|...+ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 369999999998521 124699999999999999999999999999999999997664 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.++||+|++.++. .|++||+.++. .+.+ ++.++++++..++.+.. |+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 654 456788999999998875 69999997642 1222 23467778887776543 4555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
..+||||||||++|||+|+++|+||+||||||+||++++..+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999998 22 235899999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 899999985
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=318.51 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=175.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|++|++|++++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478999998874 235999999999999999999999999999999999975532 1369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++. |++||+.+....+... ..+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 9999998875433111 122233456777888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=363.53 Aligned_cols=212 Identities=28% Similarity=0.449 Sum_probs=176.2
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 891 (1412)
...++|+||+|.|+. ++.+|+|+|++++|||++||+||||||||||++.|.|...+ .+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 346999999999962 34699999999999999999999999999999999997664 4799999998
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------hhhhcccCC
Q 000576 892 PKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-------LLRQALVGL 961 (1412)
Q Consensus 892 ~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~vg~ 961 (1412)
++++ ..+++.++||+|+..++. -||+||+.++. ++.++++ ++++++..++. +-.|+.+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecC
Confidence 8654 467788999999988887 79999998753 2233322 34444443332 235778884
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
. +.+||||||||++||||++++|+||+||||||+||+.++..|++.++++. +|+|+++++|+++. ...+|+|++|+
T Consensus 462 ~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~ 537 (567)
T COG1132 462 R-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLD 537 (567)
T ss_pred C-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEE
Confidence 4 45799999999999999999999999999999999999999999999877 57899999999963 45599999999
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|+.
T Consensus 538 ~-G~i~e~G~h 547 (567)
T COG1132 538 N-GRIVERGTH 547 (567)
T ss_pred C-CEEEEecCH
Confidence 6 799999985
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.12 Aligned_cols=219 Identities=24% Similarity=0.269 Sum_probs=175.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 588999998874 246999999999999999999999999999999999964321 1379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2335678999999988874 999999987544321 1222334567788888887531111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9998885
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.59 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=179.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++.. ....+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 47899999987411 123589999999999999999999999999999999997654 479999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDI-HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.+++.+..+.. ...|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 577789999998764322 123334445688999999998776654 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999874 4 46999999985 79999
Q ss_pred EcCC
Q 000576 1049 VGPL 1052 (1412)
Q Consensus 1049 ~G~~ 1052 (1412)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=321.51 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=174.3
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-CeEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--T-GYVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 890 (1412)
.++++|++++++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 589999999874 2359999999999999999999999999999999999532 1 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch----hhhcccCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL----LRQALVGL 961 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 961 (1412)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.. ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1245679999999888875 99999987643221 1112223445677888888742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=312.35 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=166.3
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------ccceEEE
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------PQRTAAY 231 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~y 231 (1412)
++++++++.+ |+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|
T Consensus 6 l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 6 IEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEE
Confidence 3455566555 99999999 999999999999999999999999887 799999998764311 1357999
Q ss_pred EcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 232 v~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
++|++.+++++|++||+.+...... . . .....++.+++.+||++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~-----~------~-------------------------~~~~~~~~~l~~~~l~~ 123 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKR-----N------R-------------------------EDRISVDELLDLLGLDH 123 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCC-----H------H-------------------------HHHHHHHHHHHHcCCHh
Confidence 9999888889999999987642110 0 0 01123456788899976
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
..+..+ ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++.. .+++|++++|+.+++.+
T Consensus 124 ~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 124 LLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHH
Confidence 555444 479999999999999999999999999999999999999999999998653 35677778999999999
Q ss_pred hcCeEEEEeCCeEEEec
Q 000576 392 LFDDIILISDGQIVYQG 408 (1412)
Q Consensus 392 ~~D~vivL~~G~iv~~G 408 (1412)
++|++++|++|+++.+|
T Consensus 198 ~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 198 LADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCEEEEEECCEEEecC
Confidence 99999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.93 Aligned_cols=220 Identities=18% Similarity=0.230 Sum_probs=178.6
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--C-eEEEEEEE
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--G-YVTGNITI 888 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i 888 (1412)
|..+.++++++++. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ + +.+|+|.+
T Consensus 6 ~~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 34678888887763 34699999999999999999999999999999999997543 1 24799999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 889 SGYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 889 ~g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
+|.++.. ..+++.++|++|++.++ .+|+.||+.+....+.. ..+.++.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY----KGDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc----hHHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987632 23456799999998876 59999999887644321 12234568889999998643222222 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe--
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-- 1041 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~-- 1041 (1412)
.+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVD 224 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 45799999999999999999999999999999999999999999999986 4799999999987 5778899999996
Q ss_pred -----cCcEEEEEcCC
Q 000576 1042 -----RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 -----~gG~~~y~G~~ 1052 (1412)
++|+++..|+.
T Consensus 225 ~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 225 ISQGTRTGYLVEMGPT 240 (261)
T ss_pred cccccCCceEEEeCCH
Confidence 46899999985
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=352.06 Aligned_cols=219 Identities=26% Similarity=0.338 Sum_probs=183.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 478999998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 894 KQE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS-PEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
... ..++.++|++|++.+++.+||+|++.+....+.. ......+.++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 421 1235689999999899999999999876432211 11222334456889999999987766554 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|.|||+++|+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999985 89999
Q ss_pred EcCCCC
Q 000576 1049 VGPLGR 1054 (1412)
Q Consensus 1049 ~G~~~~ 1054 (1412)
.|+..+
T Consensus 222 ~~~~~~ 227 (501)
T PRK10762 222 EREVAD 227 (501)
T ss_pred ecCcCc
Confidence 998754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.62 Aligned_cols=219 Identities=24% Similarity=0.296 Sum_probs=178.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 890 (1412)
.+.++|++++++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999884 246999999999999999999999999999999999975431 3589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCC
Q 000576 891 YPKKQ----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 891 ~~~~~----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 966 (1412)
.++.. ...++.++|++|++.+++ .|++||+.+..... .....++.+..+.++++.+++.+..+.... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234567899999988887 79999998764322 112333344456788899988653221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 967 lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57888999999985 899
Q ss_pred EEEcCC
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 ~y~G~~ 1052 (1412)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=319.50 Aligned_cols=215 Identities=24% Similarity=0.270 Sum_probs=175.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc-
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP- 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 892 (1412)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 488999998874 13599999999999999999999999999999999997654 47999999987
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcc
Q 000576 893 ----KKQE---T----FARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQAL 958 (1412)
Q Consensus 893 ----~~~~---~----~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 958 (1412)
+... . .++.++|++|+.. +.+.+|+.|++.+...... .....+.+..++++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5678899999876432111 1112233456788999999863 44433
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccE
Q 000576 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1037 (1412)
Q Consensus 959 vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v 1037 (1412)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred eEEecCcEEEEEcCC
Q 000576 1038 FLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1038 ~ll~~gG~~~y~G~~ 1052 (1412)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=323.54 Aligned_cols=210 Identities=20% Similarity=0.291 Sum_probs=173.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++. +...+|+|||+.|++||+++|+|+||||||||+++|+|... .+|+|.+||.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999998842 12358999999999999999999999999999999999764 369999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCC------CCC
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL------PGV 964 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~------~~~ 964 (1412)
.. ...++.++|++|++.+++. |++||+.... ... ++.++++++.++|.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 3456679999999988874 9999995321 111 23467788899998766654431 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5799999999999999999999999999999999999999999999875 4899999999985 34 45999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999987
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=321.43 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=170.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC---ccceEEEEcCCCC-cCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV---PQRTAAYISQHDV-HIGE 241 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 241 (1412)
..+|+|+|++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 799999998875432 2357999999863 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 321 (1412)
.||.||+.++.+..+.. + .+....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998864321110 0 011123567888899977666544
Q ss_pred cccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeC
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~ 401 (1412)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 3567777899998886 6999999999
Q ss_pred CeEEEecChhhHH
Q 000576 402 GQIVYQGPREHVL 414 (1412)
Q Consensus 402 G~iv~~G~~~~~~ 414 (1412)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=322.47 Aligned_cols=218 Identities=21% Similarity=0.306 Sum_probs=174.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 589999998874 2359999999999999999999999999999999999632 10 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGV 964 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~ 964 (1412)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+++.. +.+.. . ...
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~ 180 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRL-D-KNA 180 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHh-h-CCh
Confidence 87532 1245679999999888775 999999886543211 112223455778888888742 11111 1 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G 257 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-G 257 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 689999999987 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
+++..|+.
T Consensus 258 ~i~~~g~~ 265 (286)
T PRK14275 258 VLVEHAPT 265 (286)
T ss_pred EEEEeCCH
Confidence 99999885
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.88 Aligned_cols=214 Identities=25% Similarity=0.305 Sum_probs=170.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCcC----ccceEEEEcCCC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEFV----PQRTAAYISQHD 236 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d 236 (1412)
++++++|+|+|++|++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.+.. .++.++|++|++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 33456999999999999999999999999999999999998751 013799999998875431 246799999987
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+++ +||+||+.++........ . .+....++.+++.+||.+..++.
T Consensus 111 ~l~~-~tv~eni~~~~~~~~~~~----------------------~-----------~~~~~~~~~~l~~~~l~~~~~~~ 156 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAHKLVP----------------------R-----------KEFRGVAQARLTEVGLWDAVKDR 156 (276)
T ss_pred ccCC-ccHHHHHHHHHHhccCCC----------------------H-----------HHHHHHHHHHHHHcCCCchhhhH
Confidence 7776 899999988643211000 0 00112234567888886543222
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
. ++.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ..+|++++|+.+++.+++|++
T Consensus 157 l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 157 L-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD---RLTVIIVTHNLAQAARISDRA 232 (276)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEE
Confidence 2 234557999999999999999999999999999999999999999999998753 357777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 233 ALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=311.93 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=165.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-ccceEEEEcCCCCcCCCCCHHH
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-PQRTAAYISQHDVHIGEMTVRE 246 (1412)
Q Consensus 168 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~e 246 (1412)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 799999999875432 2467999999988888899999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccccCC
Q 000576 247 TLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326 (1412)
Q Consensus 247 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~~LS 326 (1412)
|+.+...... ... .+....++.+++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 000 001123456888999987666554 4799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCeEEE
Q 000576 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVY 406 (1412)
Q Consensus 327 GGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~iv~ 406 (1412)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+. .+++|++++|+.+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998653 35677778999999999999999999999998
Q ss_pred ecC
Q 000576 407 QGP 409 (1412)
Q Consensus 407 ~G~ 409 (1412)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=360.64 Aligned_cols=210 Identities=23% Similarity=0.366 Sum_probs=178.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|++|+|+. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999999851 13599999999999999999999999999999999997765 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4567889999999999886 9999998752 122 23478888888877544 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||+++|+++ ....||++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 699999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999985
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.49 Aligned_cols=208 Identities=23% Similarity=0.326 Sum_probs=168.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCcc-----CCCcCc-------cceEEEE
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHN-----MDEFVP-------QRTAAYI 232 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv 232 (1412)
++.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|+
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 346999999999999999999999999999999999999887 7999999987 544322 2369999
Q ss_pred cCCC--CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC
Q 000576 233 SQHD--VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310 (1412)
Q Consensus 233 ~Q~d--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 310 (1412)
+|++ .+.+.+|++||+.+.....+.. +. .+....++++++.+|+.
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~-----------~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVGAR----------------------HY-----------GDIRATAGDWLERVEID 141 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhccC----------------------cH-----------HHHHHHHHHHHHHcCCC
Confidence 9986 3567789999997643211000 00 00112346678899996
Q ss_pred c-cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 000576 311 V-CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 311 ~-~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~ 389 (1412)
+ ..++. +..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.+. .+.+|+.++|+..++
T Consensus 142 ~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~ 215 (258)
T PRK11701 142 AARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVA 215 (258)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 3 44443 4479999999999999999999999999999999999999999999987653 366777799999999
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHH
Q 000576 390 YDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 390 ~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
.+++|++++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 216 RLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=310.84 Aligned_cols=201 Identities=23% Similarity=0.300 Sum_probs=171.6
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+++|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 589999998773 23599999999999999999999999999999999997654 479999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHH
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrq 973 (1412)
.....++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.+++.+..+..+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999987654321 11 2234678899999877666543 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 974 Rl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
|++|||+++.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6888999999986
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=311.23 Aligned_cols=224 Identities=22% Similarity=0.313 Sum_probs=182.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC-C-C-eEEEEEEEcCc
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT-T-G-YVTGNITISGY 891 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~-~-~-~~~G~i~i~g~ 891 (1412)
++++||+.++... .+...+++||||++++||++||+|.|||||||+.++|.|... + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5789998877532 124579999999999999999999999999999999999665 2 3 46789999998
Q ss_pred cCC---ccc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCC
Q 000576 892 PKK---QET----FARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962 (1412)
Q Consensus 892 ~~~---~~~----~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 962 (1412)
++- ++. +.+.+++++|++. +.|.+||.+-+.=......... ..++..+++.++++.+++.+-...+...
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 643 221 2357999999964 7899999887764443322111 3445567788999999998754333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
...|||||||||.||.||+.+|++|+.||||++||...+++|++.|+++.+ .|.|+|++|||.. -+.+++|||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 357999999999999999999999999999999999999999999999986 6999999999987 4889999999999
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
.|++|..|+.
T Consensus 229 -aG~iVE~g~~ 238 (316)
T COG0444 229 -AGRIVEEGPV 238 (316)
T ss_pred -CcEEEEeCCH
Confidence 4899999997
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.47 Aligned_cols=212 Identities=22% Similarity=0.351 Sum_probs=167.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 35699999999999999999999999999999999999874 111379999999887532 12357999999887
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ +||+||+.++....+.... ......+++.++.+|+....+..
T Consensus 95 ~~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~- 139 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE- 139 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-
Confidence 776 8999999986532211000 00112235567777775422111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
.++.+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|+++
T Consensus 140 ~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~ 216 (250)
T PRK14262 140 LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIA 216 (250)
T ss_pred HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEE
Confidence 2344568999999999999999999999999999999999999999999999753 3677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 217 FMYRGELIEYGPTREIV 233 (250)
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999988774
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=311.95 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=175.1
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 6789999877410 1125799999999999999999999999999999999997653 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCC
Q 000576 895 QE------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~------~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lS 968 (1412)
.. ..++.++|++|++.+++.+|+.||+.+...... .....+..+.++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999998899999999988654321 1233444556889999999987666543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~ 1046 (1412)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 4588999999985 564
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.45 Aligned_cols=211 Identities=22% Similarity=0.350 Sum_probs=165.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 4599999999999999999999999999999999998753 212379999999987531 124579999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ +||+||+.++....+.... ......++.+++.+++.+......
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-
Confidence 76 8999999986543221000 001122344566666642211111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+.+++.+++|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~v~~ 217 (250)
T PRK14240 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNMQQASRISDKTAF 217 (250)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHHhhCCEEEE
Confidence 234457999999999999999999999999999999999999999999999742 45677789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 218 FLNGEIVEFGDTVDLF 233 (250)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=315.26 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=166.0
Q ss_pred eecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC--eEEEEEEEcCccCCcccc-cceEEEeccCCC--CCCCCC
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG--YVTGNITISGYPKKQETF-ARISGYCEQNDI--HSPQVT 916 (1412)
Q Consensus 842 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lT 916 (1412)
+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999976531 147999999988654322 357899999974 567789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch---hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000576 917 VYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL---LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 993 (1412)
Q Consensus 917 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEP 993 (1412)
+.|++.+....... .....++.++++++.+++.+ ..+.. +..||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999775433211 12333456889999999973 33333 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCC
Q 000576 994 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 994 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~ 1052 (1412)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999985 899998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=358.70 Aligned_cols=212 Identities=28% Similarity=0.417 Sum_probs=178.4
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+++|+. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 123589999999999999999999999999999999997654 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh------hcccCCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR------QALVGLPG 963 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~------~~~vg~~~ 963 (1412)
+++ ..+++.++||+|++.+++ -|++||+.++. ++.+ ++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 456778999999988776 59999997642 1222 33478888888887653 4555544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
...||||||||++|||+|+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++. ...+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999986 48999999999873 467999999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899999874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.62 Aligned_cols=214 Identities=18% Similarity=0.285 Sum_probs=168.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCcC-----ccceEEEEcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEFV-----PQRTAAYISQHD 236 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 236 (1412)
+++++|+|+|++|++|++++|+||||||||||+++|+|..+ |+...+|+|+++|.++.... .++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 34569999999999999999999999999999999999976 21113799999998764321 245799999987
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 316 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 316 (1412)
.+++. ||+||+.++....+..... .+....++.+++.+||.+...+.
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDR 142 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhH
Confidence 77775 9999998864322110000 00112345678888986532222
Q ss_pred ccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000576 317 VGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 317 vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~v 396 (1412)
+ +..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ +.+|+.++|+..++.+++|++
T Consensus 143 ~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 143 L-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred h-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhcCEE
Confidence 2 234557999999999999999999999999999999999999999999998742 567777899999999999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ivL~~G~iv~~G~~~~~~ 414 (1412)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 219 AFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=352.22 Aligned_cols=218 Identities=26% Similarity=0.325 Sum_probs=181.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 488999998874 24699999999999999999999999999999999997654 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 894 KQE----TFARISGYCEQNDIHSPQVTVYESLLYSAWLR----LSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 894 ~~~----~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
... ..++.++|++|++.+++.+||+|++.+..... ........+.++.++++++.+++.+..+..+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346899999998999999999998653210 0000122334456889999999987666554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57788999999985 89
Q ss_pred EEEEcCCC
Q 000576 1046 EIYVGPLG 1053 (1412)
Q Consensus 1046 ~~y~G~~~ 1053 (1412)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 99999874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=317.14 Aligned_cols=219 Identities=24% Similarity=0.316 Sum_probs=174.7
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999999874 2359999999999999999999999999999999999754 11 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++......... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 146 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLD-RNAQ 146 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhc-cChh
Confidence 87532 124567999999988776 7999999876433211 1122234557888898888421111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GD 223 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14251 224 LIEAGPT 230 (251)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.80 Aligned_cols=210 Identities=22% Similarity=0.319 Sum_probs=164.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 459999999999999999999999999999999999986310 1379999999876421 123569999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ .||+||+.+++...+.. + + ....++.+++.+++....+...
T Consensus 106 ~~-~tv~enl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT---G---D-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc---H---H-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 77 59999999875432210 0 0 0012334566666542111111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.+|+.++|+..++.+++|++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999998743 46677789999999999999999
Q ss_pred EeC-----------CeEEEecChhhHHH
Q 000576 399 ISD-----------GQIVYQGPREHVLE 415 (1412)
Q Consensus 399 L~~-----------G~iv~~G~~~~~~~ 415 (1412)
|++ |++++.|+++++.+
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999988753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=317.33 Aligned_cols=212 Identities=21% Similarity=0.274 Sum_probs=167.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 3469999999999999999999999999999999999998741 1259999999887432 12467999999987
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++. ||+||+.++....+.... + +.....+.+++.+||.+......
T Consensus 96 ~~~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~ 141 (251)
T PRK14249 96 PFPK-SIFDNVAFGPRMLGTTAQ-S--------------------------------RLDEVVEKSLRQAALWDEVKDNL 141 (251)
T ss_pred cCcC-cHHHHHhhHHHhcCCChh-h--------------------------------HHHHHHHHHHHHhCCchhhhhHh
Confidence 7764 999999987543221000 0 00112344556666643211111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+.+|+.++|+..++.+++|+++
T Consensus 142 -~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tilivsh~~~~~~~~~d~i~ 217 (251)
T PRK14249 142 -HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK---QNYTIAIVTHNMQQAARASDWTG 217 (251)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhhCCEEE
Confidence 34455799999999999999999999999999999999999999999999873 25677779999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|++++.|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 218 FLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCeEEEeCCHHHHH
Confidence 99999999999988874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=315.98 Aligned_cols=219 Identities=23% Similarity=0.303 Sum_probs=173.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|+++++||++||+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999998874 2469999999999999999999999999999999999643 21 1379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++ .|++||+.+....+... .....++.+.+.++.+++......... ....
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87632 234567999999988887 69999998765433211 122223456677787776421111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ .+.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 589999999987 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=351.94 Aligned_cols=209 Identities=25% Similarity=0.405 Sum_probs=165.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-G 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCccccc-c
Confidence 45899999999999999999999999999999999999987 7999999998876543 468999999876665 5
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++||+.++... . +.+...++.... ..+..++ .+++..||.+|+++
T Consensus 407 ti~~Ni~~~~~~----~---------------------~~~~~~~~~~~~------~~~~~i~--~l~~gl~t~~~~~g- 452 (544)
T TIGR01842 407 TVAENIARFGEN----A---------------------DPEKIIEAAKLA------GVHELIL--RLPDGYDTVIGPGG- 452 (544)
T ss_pred cHHHHHhccCCC----C---------------------CHHHHHHHHHHh------ChHHHHH--hCccccccccCCCc-
Confidence 999999854210 0 001111111000 0122333 35667789998765
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..||||||||++||||++++|++++|||||||||+.++..+.+.|+++.. ++.+++.++|+.+ ..+.+|+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~~-~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRPS-LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHH-HHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999998742 3456666777775 45789999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
++++.|+++++.+
T Consensus 530 ~i~~~g~~~~l~~ 542 (544)
T TIGR01842 530 RIARFGERDEVLA 542 (544)
T ss_pred EEEeeCCHHHHhh
Confidence 9999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=356.34 Aligned_cols=207 Identities=21% Similarity=0.351 Sum_probs=165.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 243 (1412)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.++ +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 4899999999999999999999999999999999999997 8999999999877653 46899999976544 679
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
++|||.++... .+.+...++....+ .+..++ .+++..||.+|+.+.
T Consensus 425 i~~Ni~~~~~~-------------------------~~d~~i~~al~~~~------l~~~i~--~lp~gldt~i~~~g~- 470 (588)
T PRK13657 425 IEDNIRVGRPD-------------------------ATDEEMRAAAERAQ------AHDFIE--RKPDGYDTVVGERGR- 470 (588)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhC------HHHHHH--hCcccccchhcCCCC-
Confidence 99999986310 11111111110000 111111 267788999998644
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
.||||||||++|||||+++|++++||||||+||+.++..|.+.|++.. +++|+++++|+.. ..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~---~~~tvIiitHr~~-~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM---KGRTTFIIAHRLS-TVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---cCCEEEEEEecHH-HHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998763 2456666777764 567899999999999
Q ss_pred EEEecChhhHHH
Q 000576 404 IVYQGPREHVLE 415 (1412)
Q Consensus 404 iv~~G~~~~~~~ 415 (1412)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=358.15 Aligned_cols=212 Identities=26% Similarity=0.435 Sum_probs=177.6
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+|+|+. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999999852 234599999999999999999999999999999999997664 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.++||+|++.+++ .|++||+.+.. ++.++ +.++++++..++.+.. |+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998876 59999997641 12232 3356777777765533 4556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999886 4799999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=317.49 Aligned_cols=209 Identities=24% Similarity=0.296 Sum_probs=167.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CceeEEEECCccCCCcCc-cceEEEEcCCCC--cCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RLYGRVTYNGHNMDEFVP-QRTAAYISQHDV--HIGEM 242 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 242 (1412)
++|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999998711 027999999998754322 256999999864 34567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|+.+++.+.++..+.. .....++.+++.+||.+.. +.. +..+
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~-~~~-~~~~ 138 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAA-RVL-KLYP 138 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChh-hhh-hcCC
Confidence 9999987643221100 0012345678889987521 111 2334
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|++|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 3567777899999999999999999999
Q ss_pred eEEEecChhhHH
Q 000576 403 QIVYQGPREHVL 414 (1412)
Q Consensus 403 ~iv~~G~~~~~~ 414 (1412)
++++.|+.+++.
T Consensus 218 ~i~~~~~~~~~~ 229 (254)
T PRK10418 218 RIVEQGDVETLF 229 (254)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=363.99 Aligned_cols=208 Identities=27% Similarity=0.441 Sum_probs=167.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|++|+||+.++|+|+||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++. +++.
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~-lf~~ 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENV-LFSR 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCe-ehhh
Confidence 35899999999999999999999999999999999999997 7999999999887654 467999999755 5567
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++.. +.+.+...+++...+ .+..++ .|+...||.+|+.+
T Consensus 546 ti~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~t~i~~~g- 591 (694)
T TIGR01846 546 SIRDNIALCNP-------------------------GAPFEHVIHAAKLAG------AHDFIS--ELPQGYNTEVGEKG- 591 (694)
T ss_pred hHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCccCcEecCCC-
Confidence 99999987521 111111111111100 111122 36778899999865
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .+.|++.++|..+.+ +.+|+|++|++|
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~-~~~d~ii~l~~G 667 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC---RGRTVIIIAHRLSTV-RACDRIIVLEKG 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---CCCEEEEEeCChHHH-HhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999999863 345666677877655 569999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++++|+++++.+
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=319.77 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=175.1
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCC---eEEEEEEE
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTG---YVTGNITI 888 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i 888 (1412)
+..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34689999999874 236999999999999999999999999999999999964321 24799999
Q ss_pred cCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCC
Q 000576 889 SGYPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963 (1412)
Q Consensus 889 ~g~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 963 (1412)
+|.++.. ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++.......... .
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~ 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKE-K 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcC-C
Confidence 9987532 2345679999999887765 99999987643321 11 12234466778888774211111111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe--
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK-- 1041 (1412)
Q Consensus 964 ~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~-- 1041 (1412)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE 236 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 357999999999999999999999999999999999999999999999865 799999999987 5788999999997
Q ss_pred ------cCcEEEEEcCC
Q 000576 1042 ------RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ------~gG~~~y~G~~ 1052 (1412)
+.|++++.|++
T Consensus 237 ~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccCceEEEeCCH
Confidence 25899999996
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.65 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=174.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ +++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 588999998873 124599999999999999999999999999999999997654 479999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHH
Q 000576 894 KQETFARISGYCEQNDIHS--PQVTVYESLLYSAWLRL-SPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE 970 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~~~~~--~~lTv~E~l~f~a~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgG 970 (1412)
.....++.++|++|++.+. ...+++|++.+...... .........++.++++++.+++.+..+..+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999987542 23578888765321000 001111223445788899999987766554 469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 971 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 971 qrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999776 4 8999999
Q ss_pred CCC
Q 000576 1051 PLG 1053 (1412)
Q Consensus 1051 ~~~ 1053 (1412)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=308.06 Aligned_cols=199 Identities=22% Similarity=0.304 Sum_probs=165.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 57889988774 24699999999999999999999999999999999997654 4799999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ..+++.++|++|++.+++.+|+.|++.+....+.. ..++.++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 23456789999999889999999999876543211 12345788999999987666543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
||++||++|+++|++++|||||+|||+.+...+++.|+++.++|+|||+++|+++ .+-+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 344433455554
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=317.80 Aligned_cols=210 Identities=23% Similarity=0.326 Sum_probs=166.3
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEEEcCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAYISQHD 236 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 236 (1412)
+++++|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 34569999999999999999999999999999999999987631 1379999999887531 1235799999998
Q ss_pred CcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC----cc
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD----VC 312 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~ 312 (1412)
.+++.+|++||+.++....+... .+ +.....+..++.+++. +.
T Consensus 95 ~~~~~~t~~enl~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~l~~~l~~~ 141 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAGIRD-RD--------------------------------HLMEVAERSLRGAALWDEVKDR 141 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCC-HH--------------------------------HHHHHHHHHHHHcCcchhhhhh
Confidence 88888999999987643221100 00 0011123344445443 22
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.+ ..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ +++++.++|+..++.++
T Consensus 142 ~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~ 213 (252)
T PRK14272 142 LK-----TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNMHQAARV 213 (252)
T ss_pred hc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHh
Confidence 23 33457999999999999999999999999999999999999999999999743 46777789999999999
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000576 393 FDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 393 ~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
+|++++|++|++++.|+++++.
T Consensus 214 ~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 214 SDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=318.08 Aligned_cols=212 Identities=21% Similarity=0.303 Sum_probs=166.1
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCC-c---CccceEEEEcCCCC
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDE-F---VPQRTAAYISQHDV 237 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~ 237 (1412)
+++++|+|+|++|++||+++|+||||||||||+++|+|.++++. ..+|+|.++|.++.. . ..++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 34569999999999999999999999999999999999987520 137999999987642 1 12357999999887
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ .||+||+.++....+...+ ......++..++.+|+.+......
T Consensus 94 ~~~-~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~ 139 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQGIKDK---------------------------------KVLDEVVERSLRGAALWDEVKDRL 139 (249)
T ss_pred cCc-ccHHHHHHhHHHhcCCCch---------------------------------HHHHHHHHHHHHHcCCchhhhHHh
Confidence 776 8999999886432211000 001112344566666643221111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+.....|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +++|+.++|+.+++.+++|+++
T Consensus 140 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 140 -KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK---NYTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred -hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEecCHHHHHHhCCEEE
Confidence 234457999999999999999999999999999999999999999999999853 3677778999999999999999
Q ss_pred EEeCCeEEEecChhhH
Q 000576 398 LISDGQIVYQGPREHV 413 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~ 413 (1412)
+|++|++++.|+.+++
T Consensus 216 ~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 216 FFLMGELVEHDDTQVI 231 (249)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998776
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=279.53 Aligned_cols=202 Identities=28% Similarity=0.406 Sum_probs=172.2
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc-------cceEEEEc
Q 000576 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYIS 233 (1412)
Q Consensus 161 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 233 (1412)
...+..+||++|++.|++||-++|+||+||||||||-+|+|+.+|+ +|+|.+.|+++..... .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3446778999999999999999999999999999999999999998 8999999999876543 26799999
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|...++|+||..||+...+.+++...+ + ........|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------~------------~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------D------------SRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------c------------HHHHHHHHHHHhCccccc
Confidence 999999999999999998877653211 0 112234578999999877
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
+.+. .+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.+. .++|++.++|+. ....-|
T Consensus 141 ~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc 213 (228)
T COG4181 141 THYP-----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARC 213 (228)
T ss_pred ccCc-----cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhh
Confidence 6554 479999999999999999999999999999999999999999999998764 578888787775 566788
Q ss_pred CeEEEEeCCeEEE
Q 000576 394 DDIILISDGQIVY 406 (1412)
Q Consensus 394 D~vivL~~G~iv~ 406 (1412)
||.+-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=307.80 Aligned_cols=196 Identities=28% Similarity=0.331 Sum_probs=166.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 35788888773 23589999999999999999999999999999999997654 4799999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ..+++.++|++|++.+++.+|++|++.+.... . .++.++++++.+++.+..+..+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHH
Confidence 2 23456789999998888899999999875311 1 1345788999999987666543 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEE
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll 1040 (1412)
||++|||+|+.+|++|+|||||+|||+.+...+++.|+++.+.|+|+|+++|++. ++.+.+|+++++
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998777999999999986 577788998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.83 Aligned_cols=216 Identities=19% Similarity=0.247 Sum_probs=171.9
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CceeEEEECCccCCCc-----CccceEEE
Q 000576 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RLYGRVTYNGHNMDEF-----VPQRTAAY 231 (1412)
Q Consensus 159 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~y 231 (1412)
.+.+++++.+|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|+++|+++... ..++.++|
T Consensus 14 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 93 (261)
T PRK14263 14 DKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93 (261)
T ss_pred EEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEE
Confidence 3444566779999999999999999999999999999999999997610 1379999999987432 12356999
Q ss_pred EcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCc
Q 000576 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV 311 (1412)
Q Consensus 232 v~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 311 (1412)
++|++.++ .+|++||+.++....+. + . +....++.+++.+||.+
T Consensus 94 v~q~~~~~-~~tv~enl~~~~~~~~~----~--~-----------------------------~~~~~~~~~l~~~~l~~ 137 (261)
T PRK14263 94 VFQQPNPF-SMSIFDNVAFGLRLNRY----K--G-----------------------------DLGDRVKHALQGAALWD 137 (261)
T ss_pred EecCCccc-cccHHHHHHHHHhhcCc----h--H-----------------------------HHHHHHHHHHHHcCCch
Confidence 99987666 69999999987543210 0 0 01123455677888754
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 000576 312 CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYD 391 (1412)
Q Consensus 312 ~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~ 391 (1412)
..+... ++..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+
T Consensus 138 ~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~ 213 (261)
T PRK14263 138 EVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQQAIR 213 (261)
T ss_pred hhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 332222 234567999999999999999999999999999999999999999999999742 4677778999999999
Q ss_pred hcCeEEEEe--------CCeEEEecChhhHH
Q 000576 392 LFDDIILIS--------DGQIVYQGPREHVL 414 (1412)
Q Consensus 392 ~~D~vivL~--------~G~iv~~G~~~~~~ 414 (1412)
++|++++|+ +|++++.|+.+++.
T Consensus 214 ~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 214 VADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred hCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999996 89999999988864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=320.26 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=163.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 367888887741 124589999999999999999999999999999999997654 4799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhccc-C-----CCCCC
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV-G-----LPGVN 965 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-g-----~~~~~ 965 (1412)
. ..+++.++|++|++.+++ .||.||+.+... .... ..+.+.++..++.+..+.+. + .....
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSM----ERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 2 234567999999987764 699999976421 1111 11223333334333222110 0 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ |+|||+++|+++ .+ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 899999999987 34 56999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=318.57 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=179.4
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++||++.++... ..+. ..++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 378999998874100 0000 0135699999999999999999999999999999999997553 489999999875
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCC
Q 000576 894 KQE------TFARISGYCEQND--IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGV 964 (1412)
Q Consensus 894 ~~~------~~~~~~~yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 964 (1412)
... ..++.++|++|+. .+.+..|+.|++.+..... ......+....++++++.+++. ...+.. .
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 149 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----P 149 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----C
Confidence 431 2356799999997 3667899999987643211 1122334455688999999986 444543 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~- 227 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN- 227 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999998764 899999999986 57778999999985
Q ss_pred cEEEEEcCCC
Q 000576 1044 GQEIYVGPLG 1053 (1412)
Q Consensus 1044 G~~~y~G~~~ 1053 (1412)
|++++.|+..
T Consensus 228 G~i~~~g~~~ 237 (268)
T PRK10419 228 GQIVETQPVG 237 (268)
T ss_pred CEEeeeCChh
Confidence 8999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=305.67 Aligned_cols=197 Identities=24% Similarity=0.391 Sum_probs=171.4
Q ss_pred eceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------ccceEEEEcCCCCcCCCC
Q 000576 170 KGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------PQRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 170 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~l 242 (1412)
=++++..+.--+|||-|+||||||||+|+|+|+..|+ +|.|.+||+.+.+.. .+|++|||+|+-.+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3578888776799999999999999999999999998 899999998764322 148899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
||+.||.|+...- .....|.+.+.||+.|..+.+ +
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P 126 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----P 126 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----C
Confidence 9999999985321 011246688899999988744 5
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
..|||||||||+|||||++.|++|+||||.+.||-....+|+-.|+++.++. ..-|+.++|..+|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCC
Confidence 5799999999999999999999999999999999999999999999998754 566778999999999999999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
++...|+.+++..
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999998853
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.96 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=171.5
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCceeEEEECCccCCCcCc---cceEEEEcC
Q 000576 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LRLYGRVTYNGHNMDEFVP---QRTAAYISQ 234 (1412)
Q Consensus 163 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 234 (1412)
++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 34456999999999999999999999999999999999999874 0126999999998754322 346899999
Q ss_pred CCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccc
Q 000576 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCAD 314 (1412)
Q Consensus 235 ~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 314 (1412)
++..++.+||+||+.++...... ... ... .+....++.+++.+||++..+
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~--~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~ 140 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHAR--RAG-------------ALT---------------HRDGEIAWQALALAGATALVG 140 (272)
T ss_pred cCCCCCCCcHHHHHhhccccccc--ccc-------------cCC---------------HHHHHHHHHHHHHcCcHhhhc
Confidence 87666779999999875311000 000 000 011123566888999976555
Q ss_pred ccccCcccccCChhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLV---------GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQP 385 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~---------~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~ 385 (1412)
+. +..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+. .+++|+.++|+
T Consensus 141 ~~-----~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~ 214 (272)
T PRK13547 141 RD-----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHD 214 (272)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 44 4479999999999999999 599999999999999999999999999998653 25667778999
Q ss_pred hhhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 386 APEAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 386 ~~~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
..++.+++|++++|++|++++.|+.+++.
T Consensus 215 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999987763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=348.80 Aligned_cols=220 Identities=21% Similarity=0.329 Sum_probs=181.2
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++|+ ++.+|+|||+++++||++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 67899998874 24699999999999999999999999999999999997654224799999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCchhh-hcccCCCCCCCCC
Q 000576 895 QET----FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP-EVDSKTRKMFIEEVMELVELNLLR-QALVGLPGVNGLS 968 (1412)
Q Consensus 895 ~~~----~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~lS 968 (1412)
... .++.+||++|++.+++.+||+|++.+........ ....++.++.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2356899999998899999999998764332111 112233445688899999997643 232 34799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 969 gGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999986 79999
Q ss_pred EcCCCC
Q 000576 1049 VGPLGR 1054 (1412)
Q Consensus 1049 ~G~~~~ 1054 (1412)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.80 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=166.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ +...+|+|.++|+++... ..++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 34699999999999999999999999999999999998753 111379999999987543 12356999999987
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ .||+||+.|+.+..+.... .+....++.+++.+++.+...+..
T Consensus 98 ~~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~ 143 (253)
T PRK14261 98 PFP-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL 143 (253)
T ss_pred cCc-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh
Confidence 776 5999999987543211000 001112344566677643211111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.+|+.++|+.+++.+++|+++
T Consensus 144 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 144 -HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK---EYTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred -hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh---CceEEEEEcCHHHHHhhCCEEE
Confidence 234557999999999999999999999999999999999999999999999754 3567778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+.+++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEECCEEEEcCCHHHHH
Confidence 99999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=315.09 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=175.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ .+.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999998874 2359999999999999999999999999999999999621123579999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCC
Q 000576 894 KQE---TFAR-ISGYCEQNDIHSPQVTVYESLLYSAWLRLS----PEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGV 964 (1412)
Q Consensus 894 ~~~---~~~~-~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 964 (1412)
... ...+ .++|++|++.+++.+|+.|++.+....... .+....+..+.++++++.+++. ...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998765432110 1111222335678889999986 34443321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-hccEeEEecC
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLLKRG 1043 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~-fD~v~ll~~g 1043 (1412)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999998877999999999986 34444 799999985
Q ss_pred cEEEEEcCC
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999986
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=319.28 Aligned_cols=213 Identities=23% Similarity=0.298 Sum_probs=173.9
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC---CeEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT---GYVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 890 (1412)
.++++|+++.+. .+.+|+|+|+.|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999998874 23599999999999999999999999999999999997542 12479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch----hhhcccCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL----LRQALVGL 961 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 961 (1412)
.++.. ...++.++|++|+..+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999987654432 112 23456788999998853 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEe-EE
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LL 1040 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~-ll 1040 (1412)
...||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 357999999999999999999999999999999999999999999999976 489999999986 5777899975 56
Q ss_pred ecCcEEEEEcCC
Q 000576 1041 KRGGQEIYVGPL 1052 (1412)
Q Consensus 1041 ~~gG~~~y~G~~ 1052 (1412)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4899998875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=318.73 Aligned_cols=218 Identities=22% Similarity=0.243 Sum_probs=173.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--C-CeEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--T-GYVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 890 (1412)
.++++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999999874 1358999999999999999999999999999999999653 1 12579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcccCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGV 964 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~ 964 (1412)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. .......++.+.+.++.+++.. +.+.. .. ..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~-~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HD-NA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hc-Cc
Confidence 87632 234567999999988877 499999987653321 1112222344667777765431 21111 11 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-G 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 799999999987 57788999999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 243 ~i~~~g~~ 250 (271)
T PRK14238 243 YVNEYDDT 250 (271)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.92 Aligned_cols=235 Identities=26% Similarity=0.398 Sum_probs=193.5
Q ss_pred cCCCcccCCCCceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCe
Q 000576 802 KRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY 881 (1412)
Q Consensus 802 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~ 881 (1412)
..+.|.+|.+...+.++++++..+ ..++.+|+|+||.+.+||.+||+||||||||||.++|.|...+
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-- 388 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-- 388 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--
Confidence 345688888888999999998432 2356899999999999999999999999999999999997654
Q ss_pred EEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHHcCCch
Q 000576 882 VTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSK-----TRKMFIEEVMELVELNL 953 (1412)
Q Consensus 882 ~~G~i~i~g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~-----~~~~~v~~~l~~l~l~~ 953 (1412)
.+|.|++||.+.++ +.+-+.+||.||+-.+++. ||.||+. |+..+.+.+ .+...|.|++- .+.+
T Consensus 389 ~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~ 460 (580)
T COG4618 389 TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELIL--RLPQ 460 (580)
T ss_pred CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHHH--hCcC
Confidence 47999999998765 4567899999998888775 9999994 433333332 12233444443 3445
Q ss_pred hhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh
Q 000576 954 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1033 (1412)
Q Consensus 954 ~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~ 1033 (1412)
-.|+.+|.. ...||||||||+++||||-.+|.+++||||-|+||.+....+.+.|...+++|+|+|+++|.|+ +...
T Consensus 461 GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~ 537 (580)
T COG4618 461 GYDTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALAS 537 (580)
T ss_pred CccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhh
Confidence 568888865 4689999999999999999999999999999999999999999999999999999999999997 6889
Q ss_pred hccEeEEecCcEEEEEcCCCCCchHHHHhhhc
Q 000576 1034 FDELFLLKRGGQEIYVGPLGRHSSHLIKYFEG 1065 (1412)
Q Consensus 1034 fD~v~ll~~gG~~~y~G~~~~~~~~~~~yF~~ 1065 (1412)
+|+|++|+ +|++--|||. ++++.-...
T Consensus 538 ~Dkilvl~-~G~~~~FG~r----~eVLa~~~~ 564 (580)
T COG4618 538 VDKILVLQ-DGRIAAFGPR----EEVLAKVLR 564 (580)
T ss_pred cceeeeec-CChHHhcCCH----HHHHHHhcC
Confidence 99999998 5899999997 566665543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=348.04 Aligned_cols=213 Identities=27% Similarity=0.411 Sum_probs=176.6
Q ss_pred CceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCc
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 891 (1412)
...++++||+|+|+. +.+.+|+|+|+.|+|||++||+|+||||||||+++|+|...+ .+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 346999999999852 224589999999999999999999999999999999997654 4799999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-------hhcccCC
Q 000576 892 PKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGL 961 (1412)
Q Consensus 892 ~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~ 961 (1412)
++++ ..+++.++||+|++.+++ .|++||+.+.. ++.++ +.+.++++..++.+. .|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456788999999988776 59999997531 12222 335666777766543 3455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
. ..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|+|+++|+++ ..+.||++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 4 46799999999999999999999999999999999999999999999985 5899999999986 456799999998
Q ss_pred cCcEEEEEcCC
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~~y~G~~ 1052 (1412)
+ |+++..|+.
T Consensus 666 ~-G~i~~~g~~ 675 (694)
T TIGR01846 666 K-GQIAESGRH 675 (694)
T ss_pred C-CEEEEeCCH
Confidence 5 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=317.39 Aligned_cols=212 Identities=21% Similarity=0.360 Sum_probs=166.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
.+++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 3469999999999999999999999999999999999986 2111379999999886431 12456999999877
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ .||+||+.++....+.... +..+..++.+++.+|+........
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 141 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAGVKDK---------------------------------ELIDQRVEESLKQAAIWKETKDNL 141 (251)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchHHHh
Confidence 665 7999999886432211000 001122455677788742210111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.+ +++|+.++|+..++.+++|+|+
T Consensus 142 -~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 142 -DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred -ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEE
Confidence 234557999999999999999999999999999999999999999999999743 4677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=342.21 Aligned_cols=213 Identities=25% Similarity=0.359 Sum_probs=176.9
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++||+++|+. .++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEe
Confidence 36999999999852 124589999999999999999999999999999999997664 37999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-------hcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 962 (1412)
+++ ..+++.++||+|++.+++ -|++||+.+.. +.+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 643 456778999999998775 59999997542 11222 23467788888876543 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
.++||||||||++|||+++++|+|++||||||+||..+++.+++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC
Confidence 45799999999999999999999999999999999999999999999885 4799999999985 5788999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|+++..|+.
T Consensus 543 -g~i~~~g~~ 551 (571)
T TIGR02203 543 -GRIVERGTH 551 (571)
T ss_pred -CEEEeeCCH
Confidence 899988874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=348.53 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=180.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|++++++ ++.+|+|+|+++++||++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999884 23599999999999999999999999999999999997654 479999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQE---T-FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
... . .++.+||++|++.+++.+||+|++.+... . ..+.++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 12458999999999999999999987531 1 1223456788999999987666554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 899999
Q ss_pred cCCC
Q 000576 1050 GPLG 1053 (1412)
Q Consensus 1050 G~~~ 1053 (1412)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=319.39 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=163.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCcC-----ccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEFV-----PQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 238 (1412)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +....+|+|.++|+++.... .++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 459999999999999999999999999999999999864 10012799999999875321 23579999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ .||+||+.++.+..+... + ...+..++..++.+++........
T Consensus 114 ~~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 158 (268)
T PRK14248 114 FP-KSIYNNITHALKYAGERR--K-------------------------------SVLDEIVEESLTKAALWDEVKDRL- 158 (268)
T ss_pred Cc-ccHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCCcchHHHH-
Confidence 76 499999988643211000 0 000112344566677642111111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +++|+.++|+.+++.+++|++++
T Consensus 159 ~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNMQQALRVSDRTAF 235 (268)
T ss_pred hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999999843 35677789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|++++.|+.+++.
T Consensus 236 l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 236 FLNGDLVEYDQTEQIF 251 (268)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=355.60 Aligned_cols=209 Identities=24% Similarity=0.414 Sum_probs=166.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
+++|+|+|+++++||.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++ ++++.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~-~lf~~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDV-VLFND 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCc-ccccc
Confidence 35899999999999999999999999999999999999997 7999999998876543 46799999975 55577
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++..- +.+.+.+.++....+ .+..++ .|++..||.+|+.+
T Consensus 421 Ti~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~------l~~~i~--~lp~gldt~i~~~g- 467 (571)
T TIGR02203 421 TIANNIAYGRTE------------------------QADRAEIERALAAAY------AQDFVD--KLPLGLDTPIGENG- 467 (571)
T ss_pred cHHHHHhcCCCC------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCcccceecCCC-
Confidence 999999976310 011111111110000 111111 36778899999875
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
+.||||||||++||||++.+|+|++||||||+||..++..|.+.|++.. +++|+|.++|+. ...+.+|+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~---~~~tiIiitH~~-~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM---QGRTTLVIAHRL-STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---CCCEEEEEehhh-HHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999999863 245666577775 567889999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++..|+++++.+
T Consensus 544 ~i~~~g~~~~l~~ 556 (571)
T TIGR02203 544 RIVERGTHNELLA 556 (571)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=317.10 Aligned_cols=218 Identities=20% Similarity=0.249 Sum_probs=173.8
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--C-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--G-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 890 (1412)
.++++|++++++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 588999998874 23589999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKK-----QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~-----~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++. ...+++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+.... ....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567899999988777 499999987653321 11 1223456677888777432111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec---
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR--- 1042 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~--- 1042 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999987 68899999999982
Q ss_pred -----CcEEEEEcCC
Q 000576 1043 -----GGQEIYVGPL 1052 (1412)
Q Consensus 1043 -----gG~~~y~G~~ 1052 (1412)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999985
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=298.74 Aligned_cols=169 Identities=28% Similarity=0.445 Sum_probs=149.4
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|++++++ ...+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 35788888763 13589999999999999999999999999999999997654 4799999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHH
Q 000576 895 Q--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 895 ~--~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqr 972 (1412)
. ..+++.++|++|++.+++..|+.|++. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999998888899999862 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecC
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 973 qRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~g 1043 (1412)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ .+.+.+|++++|++|
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999877899999999987 577789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=291.30 Aligned_cols=218 Identities=25% Similarity=0.368 Sum_probs=186.2
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCcc---ceEEEEc
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYIS 233 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~ 233 (1412)
.++++.++.+.+|+|+|..|++|.+|+++|||||||||||.++++++..+ +|+|+++|.++.....+ +.++..-
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999887 89999999998776543 6678888
Q ss_pred CCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccc
Q 000576 234 QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCA 313 (1412)
Q Consensus 234 Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 313 (1412)
|+...-..+||||-+.||.--..-| | + ..+....++..++.|+|++..
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqG-R-----------------l--------------t~eD~~~I~~aieyl~L~~l~ 129 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQG-R-----------------L--------------TKEDRRIINEAIEYLHLEDLS 129 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCC-C-----------------C--------------chHHHHHHHHHHHHhcccchH
Confidence 9877778899999999984211100 0 0 012334577888999998777
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000576 314 DTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393 (1412)
Q Consensus 314 dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~ 393 (1412)
|.. ...||||||||.-||..++.+.+.++||||.+.||.....++++.|++++++.++|+|+ +.|+...+..++
T Consensus 130 dry-----Ld~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~Ys 203 (252)
T COG4604 130 DRY-----LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYS 203 (252)
T ss_pred HHh-----HHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhh
Confidence 644 55799999999999999999999999999999999999999999999999988666555 789999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHH
Q 000576 394 DDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 394 D~vivL~~G~iv~~G~~~~~~~ 415 (1412)
|+|+-|.+|+++.+|+++++.+
T Consensus 204 D~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 204 DHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred hheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999863
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=321.07 Aligned_cols=212 Identities=19% Similarity=0.332 Sum_probs=164.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
.+.+|+|+|++|++|++++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 3459999999999999999999999999999999999854 3001279999999876432 12457999999987
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
+++ .||+||+.++.+..+.... ......++.+++.+|+........
T Consensus 131 l~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~ 176 (286)
T PRK14275 131 PFP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDRL 176 (286)
T ss_pred CCc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhHh
Confidence 776 4999999986533211000 001122345667777642110011
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
++.+..|||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.+ +.+|++++|+.+++.+++|+++
T Consensus 177 -~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 177 -DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred -hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEE
Confidence 234457999999999999999999999999999999999999999999998753 3677778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+++++.
T Consensus 253 ~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=308.72 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=158.2
Q ss_pred ceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHH
Q 000576 839 RLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVY 918 (1412)
Q Consensus 839 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~ 918 (1412)
.+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHH
Confidence 35799999999999999999999999999999999997654 47999999976421 11123345789999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000576 919 ESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998 (1412)
Q Consensus 919 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD 998 (1412)
||+.+....+. ....+.++.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 103 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987654321 223344456788899999987766554 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEc
Q 000576 999 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVG 1050 (1412)
Q Consensus 999 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G 1050 (1412)
+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999998777899999999986 57778999999985 7888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=318.99 Aligned_cols=211 Identities=21% Similarity=0.305 Sum_probs=166.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 45999999999999999999999999999999999998741 01379999999987531 124679999998877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++. ||+||+.++....+... + ...+..++.+++.+|+.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINN--R-------------------------------RVLDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCChhHHHHh-
Confidence 775 99999988654322100 0 001122445667777753211121
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++..+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.+++.++|+.+++.+++|++++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEeCCHHHHHhhCCEEEE
Confidence 234557999999999999999999999999999999999999999999999853 35667789999999999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000576 399 ISDGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~G~iv~~G~~~~~~ 414 (1412)
|++|+++..|+++++.
T Consensus 240 l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 240 MYMGKLVEYGDTDTLF 255 (272)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999988763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=317.48 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=165.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--ceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR--LYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~--~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
+++|+|+|+++++||+++|+|+||||||||+++|+|.++++.. .+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4599999999999999999999999999999999999875311 379999999887431 123579999998877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ +||+||+.++....+...+ .+....++.+++.+|+....... -
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~-~ 144 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDK-L 144 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhH-h
Confidence 76 8999999886432210000 00112344566777764211111 1
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.+..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ +.+|+.++|+.+++.+++|++++
T Consensus 145 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 145 NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNMQQATRVSDFTAF 221 (259)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCeEEE
Confidence 234557999999999999999999999999999999999999999999999743 36777789999999999999999
Q ss_pred Ee-----CCeEEEecChhhHH
Q 000576 399 IS-----DGQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~-----~G~iv~~G~~~~~~ 414 (1412)
|+ +|+++++|+++++.
T Consensus 222 l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 222 FSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EeccCCCCceEEEeCCHHHHh
Confidence 98 59999999998874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=310.63 Aligned_cols=209 Identities=22% Similarity=0.362 Sum_probs=169.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 588999998873 23599999999999999999999999999999999997543 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCCCCCH
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-LLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~lSg 969 (1412)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 224567899999988876 4999999875433221 1 1124567899999995 344443 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhhccEeEEecCcEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIY 1048 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y 1048 (1412)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .|.|||+++|+++ .+ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999986 34 57999999964443343
Q ss_pred Ec
Q 000576 1049 VG 1050 (1412)
Q Consensus 1049 ~G 1050 (1412)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=351.78 Aligned_cols=207 Identities=21% Similarity=0.360 Sum_probs=165.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCCC
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 167 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 243 (1412)
++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.++ +.|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccC-ccc
Confidence 4899999999999999999999999999999999999987 7999999998876543 46899999986655 579
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCcccc
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 V~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 323 (1412)
++||+.++.... +.++..++.... ...+.+. .++...||.+|+.+ .
T Consensus 425 i~~Ni~~~~~~~-------------------------~~~~~~~a~~~~-----~~~~~i~---~l~~g~~t~~~~~~-~ 470 (585)
T TIGR01192 425 IRENIRLGREGA-------------------------TDEEVYEAAKAA-----AAHDFIL---KRSNGYDTLVGERG-N 470 (585)
T ss_pred HHHHHhcCCCCC-------------------------CHHHHHHHHHHh-----CcHHHHH---hccccccchhcCCC-C
Confidence 999998863210 011111111000 0111121 36667789998764 4
Q ss_pred cCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCCe
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 ~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G~ 403 (1412)
+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. .+.|++.++|+.+.+ +.+|+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~---~~~tvI~isH~~~~~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTV-RNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcChHHH-HcCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999998863 255666678887666 6699999999999
Q ss_pred EEEecChhhHHH
Q 000576 404 IVYQGPREHVLE 415 (1412)
Q Consensus 404 iv~~G~~~~~~~ 415 (1412)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=313.88 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=176.0
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCC--CC-eEEEEEEEcC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT--TG-YVTGNITISG 890 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 890 (1412)
.++++||++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 478899998774 2459999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCC
Q 000576 891 YPKKQ-----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 891 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 965 (1412)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++.+.+.++.+++.......... ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87642 1345679999999888875 99999987643221 112233345678888998885422122222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||+|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999987 68888999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.39 Aligned_cols=219 Identities=22% Similarity=0.307 Sum_probs=175.5
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCC--Ce--EEEEEEEc
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTT--GY--VTGNITIS 889 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~--~~G~i~i~ 889 (1412)
.+.++|++++++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 488999998874 24689999999999999999999999999999999997543 21 23666666
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhh-hcccCCCCCC
Q 000576 890 GYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-QALVGLPGVN 965 (1412)
Q Consensus 890 g~~~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~ 965 (1412)
|.+... ...++.++|++|++.+++.+|++||+.+...... .....+.++.++++++.+++.+.. +.... ...
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 152 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS--PAS 152 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC--Ccc
Confidence 665432 2345678999999999999999999988643321 112233445688899999986321 11111 235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcE
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~ 1045 (1412)
.||+|||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|+++ .+.+.||++++|++ |+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~~y~G~~ 1052 (1412)
++..|+.
T Consensus 230 i~~~g~~ 236 (257)
T PRK14246 230 LVEWGSS 236 (257)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=306.94 Aligned_cols=195 Identities=22% Similarity=0.306 Sum_probs=158.1
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------ccceEEEE
Q 000576 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------PQRTAAYI 232 (1412)
Q Consensus 160 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv 232 (1412)
..+++++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|+
T Consensus 5 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 5 SKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred EEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 34445567999999999999999999999999999999999999886 799999999854221 13579999
Q ss_pred cCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcc
Q 000576 233 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVC 312 (1412)
Q Consensus 233 ~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 312 (1412)
+|++.+++.+||+||+.++....+... .+....++.+++.+||++.
T Consensus 82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~ 127 (206)
T TIGR03608 82 FQNFALIENETVEENLDLGLKYKKLSK----------------------------------KEKREKKKEALEKVGLNLK 127 (206)
T ss_pred ecchhhccCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCchhh
Confidence 999888888999999998643221100 0111235668899999876
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000576 313 ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 313 ~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~ 392 (1412)
.|+.+ +.||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.. .+.+++.++|+... .+.
T Consensus 128 ~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~-~~~ 199 (206)
T TIGR03608 128 LKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND--EGKTIIIVTHDPEV-AKQ 199 (206)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHH-Hhh
Confidence 66554 46999999999999999999999999999999999999999999999864 25666667888765 478
Q ss_pred cCeEEEE
Q 000576 393 FDDIILI 399 (1412)
Q Consensus 393 ~D~vivL 399 (1412)
+|++++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.97 Aligned_cols=210 Identities=26% Similarity=0.398 Sum_probs=169.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++. ..+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 3678999987731 124599999999999999999999999999999999997543 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccC------CCCC
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG------LPGV 964 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg------~~~~ 964 (1412)
.. ...++.++|++|++.+++ .||.|++.+... ... ++.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223567899999988776 699999875321 111 2235678888888876665431 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCc
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG 1044 (1412)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. . .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 89999999986 3 479999999986 7
Q ss_pred EEEEEc
Q 000576 1045 QEIYVG 1050 (1412)
Q Consensus 1045 ~~~y~G 1050 (1412)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=346.11 Aligned_cols=217 Identities=28% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccC
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 893 (1412)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 488999998874 23599999999999999999999999999999999997654 479999999876
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCH
Q 000576 894 KQ----ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLST 969 (1412)
Q Consensus 894 ~~----~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSg 969 (1412)
.. ..+++.++|++|++.+++.+||+||+.+....+........+.++.++++++.+++.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 42 1234678999999989999999999987532111111223344556889999999976555443 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEE
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049 (1412)
Q Consensus 970 GqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~ 1049 (1412)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999987 57788999999985 788877
Q ss_pred cCC
Q 000576 1050 GPL 1052 (1412)
Q Consensus 1050 G~~ 1052 (1412)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.81 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=163.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCceeEEEECCccCCCc-----CccceEEEEcCCCC
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 237 (1412)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3469999999999999999999999999999999999865 3211379999999877421 12357999999987
Q ss_pred cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccc
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 317 (1412)
.++ .||+||+.+.....+.... + .........++.+|+........
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~i~~~~ 142 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGVKDK-A--------------------------------VLDEAVETSLKQAAIWDEVKDHL 142 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCccchhhHH
Confidence 777 7999999986543221000 0 00011233455555532111111
Q ss_pred cCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 g~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vi 397 (1412)
+..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+++.++|+..++.+++|+|+
T Consensus 143 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 143 -HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred -hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEE
Confidence 233457999999999999999999999999999999999999999999999854 3 567778999999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 vL~~G~iv~~G~~~~~~ 414 (1412)
+|++|+++..|+..++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 219 FFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999888763
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=313.90 Aligned_cols=221 Identities=19% Similarity=0.306 Sum_probs=171.7
Q ss_pred hhcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CceeEEEECCccCCCcC---ccceEE
Q 000576 157 NILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL---RLYGRVTYNGHNMDEFV---PQRTAA 230 (1412)
Q Consensus 157 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~---~~~G~V~~~G~~~~~~~---~~~~~~ 230 (1412)
+++.++++++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+. .+.|+|.++|+++.... .++.++
T Consensus 14 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~ 93 (257)
T PRK14246 14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG 93 (257)
T ss_pred eeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceE
Confidence 344555666789999999999999999999999999999999999998762 12355555566554322 246799
Q ss_pred EEcCCCCcCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC
Q 000576 231 YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310 (1412)
Q Consensus 231 yv~Q~d~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 310 (1412)
|++|++.+++.+||+||+.++....+.... .+....++++++.+|+.
T Consensus 94 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~ 140 (257)
T PRK14246 94 MVFQQPNPFPHLSIYDNIAYPLKSHGIKEK---------------------------------REIKKIVEECLRKVGLW 140 (257)
T ss_pred EEccCCccCCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCC
Confidence 999998888899999999986432111000 01112345678888886
Q ss_pred ccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 000576 311 VCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAY 390 (1412)
Q Consensus 311 ~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~ 390 (1412)
+...... ++.+..||||||||++||||++.+|++++|||||+|||..+...+.+.|+++.+ +.+|+.++|+...+.
T Consensus 141 ~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~~~~~ 216 (257)
T PRK14246 141 KEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNPQQVA 216 (257)
T ss_pred ccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCHHHHH
Confidence 3211111 234457999999999999999999999999999999999999999999998743 367777899999999
Q ss_pred hhcCeEEEEeCCeEEEecChhhHH
Q 000576 391 DLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 391 ~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
+++|++++|++|+++..|+.+++.
T Consensus 217 ~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 217 RVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999988764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=350.79 Aligned_cols=208 Identities=26% Similarity=0.386 Sum_probs=165.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc---cceEEEEcCCCCcCCCC
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 242 (1412)
.++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.++ +.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF-SD 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeec-cc
Confidence 45899999999999999999999999999999999999997 7999999998876543 46799999986655 56
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 322 (1412)
|++|||.++... .+.+...++....+ ..+. ...++++.||.+|+.+.
T Consensus 404 ti~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~-----l~~~---i~~lp~gl~t~~~~~g~ 450 (569)
T PRK10789 404 TVANNIALGRPD-------------------------ATQQEIEHVARLAS-----VHDD---ILRLPQGYDTEVGERGV 450 (569)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC-----CHHH---HHhCcCcccceecCCCC
Confidence 999999886311 00011111110000 0111 23477888999998654
Q ss_pred ccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEeCC
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 ~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~vivL~~G 402 (1412)
.||||||||++||||++.+|++++|||||++||+.++..+.+.|+++. ++.|++.++|+.+. .+.+|+|++|++|
T Consensus 451 -~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tii~itH~~~~-~~~~d~i~~l~~G 525 (569)
T PRK10789 451 -MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG---EGRTVIISAHRLSA-LTEASEILVMQHG 525 (569)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEecchhH-HHcCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999999863 34556657777654 5679999999999
Q ss_pred eEEEecChhhHHH
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~iv~~G~~~~~~~ 415 (1412)
+++.+|+++++.+
T Consensus 526 ~i~~~g~~~~l~~ 538 (569)
T PRK10789 526 HIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEecCHHHHHH
Confidence 9999999998864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.00 Aligned_cols=215 Identities=25% Similarity=0.282 Sum_probs=173.1
Q ss_pred eEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc-
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP- 892 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 892 (1412)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 478999998874 13589999999999999999999999999999999997654 47999999976
Q ss_pred ----CCcc-------cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCch-hhhcc
Q 000576 893 ----KKQE-------TFARISGYCEQNDI--HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQAL 958 (1412)
Q Consensus 893 ----~~~~-------~~~~~~~yv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 958 (1412)
+... ..++.++|++|++. ..+.+|+.|++.+..... .. ....+..+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12346899999874 456689999986542211 11 111233456788999999963 44443
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhhccE
Q 000576 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1037 (1412)
Q Consensus 959 vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~i~~~fD~v 1037 (1412)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred eEEecCcEEEEEcCC
Q 000576 1038 FLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1038 ~ll~~gG~~~y~G~~ 1052 (1412)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=348.71 Aligned_cols=213 Identities=28% Similarity=0.423 Sum_probs=173.9
Q ss_pred ceEEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCcc
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 892 (1412)
..++++|++++|+. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 36999999999852 124689999999999999999999999999999999997654 47999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchh-------hhcccCCC
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 962 (1412)
+.. ..+++.++||+|++.+++. |++||+.+.. .+.+++ .++++++..++.+. .|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 653 3466789999999988875 9999997432 122222 24445555554432 24445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEec
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~ 1042 (1412)
..+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++..+|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~ 528 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD 528 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998766899999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~~y~G~~ 1052 (1412)
|++++.|+.
T Consensus 529 -G~i~~~g~~ 537 (544)
T TIGR01842 529 -GRIARFGER 537 (544)
T ss_pred -CEEEeeCCH
Confidence 899999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=315.27 Aligned_cols=213 Identities=23% Similarity=0.312 Sum_probs=169.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCceeEEEECCccCCCc-----CccceEEEEcCCCCc
Q 000576 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRLYGRVTYNGHNMDEF-----VPQRTAAYISQHDVH 238 (1412)
Q Consensus 166 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 238 (1412)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|+..+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999999874 12479999999886421 123569999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 318 (1412)
++ +||+||+.++....+.... .+....+..+++.+|+.+..+...
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 144 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI- 144 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-
Confidence 76 8999999886432110000 001123456777888754222111
Q ss_pred CcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D~viv 398 (1412)
++.+..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++.. .+++|+.++|+..++.+++|+|++
T Consensus 145 ~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~-~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR-SELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhcCEEEE
Confidence 2445579999999999999999999999999999999999999999999997643 356777789999999999999999
Q ss_pred EeC-----CeEEEecChhhHH
Q 000576 399 ISD-----GQIVYQGPREHVL 414 (1412)
Q Consensus 399 L~~-----G~iv~~G~~~~~~ 414 (1412)
|++ |+++++|+++++.
T Consensus 224 l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 224 FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EccCCCcCceEEEeCCHHHHH
Confidence 999 9999999999874
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.68 Aligned_cols=219 Identities=26% Similarity=0.301 Sum_probs=170.5
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|+.|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 67899998874 23599999999999999999999999999999999997321135799999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-hcCC--CC-CCHHHHHHHHHHHHHHcCCc-hhhhcccCCCCCC
Q 000576 895 QE---T-FARISGYCEQNDIHSPQVTVYESLLYSAW-LRLS--PE-VDSKTRKMFIEEVMELVELN-LLRQALVGLPGVN 965 (1412)
Q Consensus 895 ~~---~-~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~-lr~~--~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 965 (1412)
.. . .++.++|++|++.+++.+|+.+++.+... ++.. .+ ....+....+++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 22468999999888888887776543211 1110 00 11122345677888888884 3333322 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-hccEeEEecCc
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLLKRGG 1044 (1412)
Q Consensus 966 ~lSgGqrqRl~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~-fD~v~ll~~gG 1044 (1412)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 34454 799999985 8
Q ss_pred EEEEEcCC
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~~y~G~~ 1052 (1412)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 99999975
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=316.68 Aligned_cols=207 Identities=25% Similarity=0.335 Sum_probs=170.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcCc------cceEEEEcCCC--
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP------QRTAAYISQHD-- 236 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 236 (1412)
++.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 356999999999999999999999999999999999999886 8999999998754322 35799999986
Q ss_pred CcCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC-cccc
Q 000576 237 VHIGEMTVRETLAFSARCQ-GVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD-VCAD 314 (1412)
Q Consensus 237 ~~~~~lTV~e~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~d 314 (1412)
.+.+..|++|++.+..... .. + ..+....++.+++.+|++ ...+
T Consensus 101 ~~~~~~t~~~~l~~~~~~~~~~-----------------------~-----------~~~~~~~~~~~l~~~gl~~~~~~ 146 (268)
T PRK10419 101 AVNPRKTVREIIREPLRHLLSL-----------------------D-----------KAERLARASEMLRAVDLDDSVLD 146 (268)
T ss_pred ccCCCCCHHHHHHHHHHhhccC-----------------------C-----------HHHHHHHHHHHHHHcCCChhHhh
Confidence 3567799999997643210 00 0 001122356788889996 3444
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000576 315 TMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394 (1412)
Q Consensus 315 t~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~~~~~D 394 (1412)
+. .+.||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++++. .+++++.++|+..++.+++|
T Consensus 147 ~~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 147 KR-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ-FGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred CC-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH-cCcEEEEEECCHHHHHHhCC
Confidence 43 4479999999999999999999999999999999999999999999998653 35677778999999999999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 000576 395 DIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 395 ~vivL~~G~iv~~G~~~~~~ 414 (1412)
++++|++|++++.|+.+++.
T Consensus 221 ~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 221 RVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEEECCEEeeeCChhhcc
Confidence 99999999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.29 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=166.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCcc-----CCCcCc-------cceEEEE
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHN-----MDEFVP-------QRTAAYI 232 (1412)
Q Consensus 165 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv 232 (1412)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|+
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 345899999999999999999999999999999999999886 7999999976 443221 2458999
Q ss_pred cCCCC--cCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHhCCC
Q 000576 233 SQHDV--HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLD 310 (1412)
Q Consensus 233 ~Q~d~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 310 (1412)
+|++. ..+.+|+.||+.+....... ..+ .+....++.+++.+|+.
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~~~-~~~--------------------------------~~~~~~~~~~l~~l~l~ 138 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAIGA-RHY--------------------------------GNIRAAAHDWLEEVEID 138 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHhcc-cch--------------------------------HHHHHHHHHHHHHcCCC
Confidence 99863 34567999999754211000 000 00112345688999996
Q ss_pred c-cccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 000576 311 V-CADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 311 ~-~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~~~~~~~ 389 (1412)
+ ..++. ++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++.. .+.++++++|+.+++
T Consensus 139 ~~~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~ 212 (253)
T TIGR02323 139 PTRIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVA 212 (253)
T ss_pred hhhhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 3 44444 4479999999999999999999999999999999999999999999987653 356777789999999
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHH
Q 000576 390 YDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 390 ~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
.+++|++++|++|++++.|+.+++.
T Consensus 213 ~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 213 RLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHhcCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=305.02 Aligned_cols=197 Identities=28% Similarity=0.364 Sum_probs=164.7
Q ss_pred EEEeceeeeeecchhhhhccccCCceeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCC
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 894 (1412)
++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 68899998773 24699999999999999999999999999999999997553 4799999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHH
Q 000576 895 QETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKR 974 (1412)
Q Consensus 895 ~~~~~~~~~yv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqR 974 (1412)
....++.++|++|++.+++.+||+|++.+....+. .. ++.++++++.+++.+..+... ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888889999999987553321 11 234788999999987655443 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEe
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 975 l~ia~~L~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~ 1041 (1412)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999986 3443 8887774
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=281.46 Aligned_cols=213 Identities=26% Similarity=0.342 Sum_probs=179.8
Q ss_pred hcccccccceeeeceeeEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCCceeEEEECCccCCCcC-------c-----
Q 000576 158 ILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-------P----- 225 (1412)
Q Consensus 158 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~----- 225 (1412)
++.++++...+|++||+..+.|+.+.|+|.+||||||+|+||.=+..|+ .|.|.+||+.+.-.. +
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 4567889999999999999999999999999999999999999988887 799999998763211 1
Q ss_pred ----cceEEEEcCCCCcCCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHH
Q 000576 226 ----QRTAAYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVT 300 (1412)
Q Consensus 226 ----~~~~~yv~Q~d~~~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1412)
+.+.++|+|+..+...|||.||+.-+.. .-+. ...++....
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~----------------------------------~k~ea~e~A 133 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV----------------------------------SKAEAIERA 133 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC----------------------------------CHHHHHHHH
Confidence 1247999999999999999999875421 1110 111233445
Q ss_pred HHHHHHhCCCccccccccCcccccCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 000576 301 DYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380 (1412)
Q Consensus 301 ~~il~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsiA~aL~~~p~vllLDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii 380 (1412)
+..|..+||.+..|.+ +..|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++++.. +.|.+
T Consensus 134 e~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv 206 (256)
T COG4598 134 EKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMV 206 (256)
T ss_pred HHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEE
Confidence 6789999999887754 4469999999999999999999999999999999999999999999999873 55666
Q ss_pred EEecChhhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000576 381 SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 381 ~i~~~~~~~~~~~D~vivL~~G~iv~~G~~~~~~ 414 (1412)
.++|.+..+-+...+|+.|.+|.|-++||++++.
T Consensus 207 ~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 207 VVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred EEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 6899999999999999999999999999999983
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=345.37 Aligned_cols=206 Identities=27% Similarity=0.352 Sum_probs=172.3
Q ss_pred eeeecceEEEEeCCeEEEEEcCCCCChhhHHhhhcCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCCCCCCCC
Q 000576 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ----ETFARISGYCEQNDIHSPQV 915 (1412)
Q Consensus 840 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~yv~Q~~~~~~~l 915 (1412)
+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. ...++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999997654 47999999987642 12345689999998888999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCchhhhcccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000576 916 TVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 995 (1412)
Q Consensus 916 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~lSgGqrqRl~ia~~L~~~p~illlDEPTs 995 (1412)
||+|++.+.............+..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123333456889999999986665543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhhccEeEEecCcEEEEEcCCCC
Q 000576 996 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGR 1054 (1412)
Q Consensus 996 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~i~~~fD~v~ll~~gG~~~y~G~~~~ 1054 (1412)
|||+.+...+.+.|+++++.|+|||+++|+++ ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999986 57788999999985 89999998743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1412 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-04 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-04 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1412 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-16 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-12 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-08 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-08 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 9e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 5e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 7e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 7e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-04 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGY-PKKQETFA 899
L +S G + L+G GAGKTT + +++ + ++G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R Y + + E L + A S + + +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1019 VVCTIH 1024
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 60/265 (22%), Positives = 91/265 (34%), Gaps = 72/265 (27%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L R ILKG+S I G + L+GP +GKTT L ++ + S G VT G
Sbjct: 21 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGK 77
Query: 219 NMDE----------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELA 268
N+ E ++P+ AY M E L F A S E+
Sbjct: 78 NVVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIE 124
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGG 328
+ +I GL + + S G
Sbjct: 125 EM-----------------------------VERATEIAGL-----GEKIKDRVSTYSKG 150
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTT-LIS--LL 383
+++ L+ + +DE ++GLD ++ R+ + G T L+S +
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV----RKILKQASQEGLTILVSSHNM 206
Query: 384 QPAPEAYDLFDDIILISDGQIVYQG 408
E L D I LI +G IV G
Sbjct: 207 ---LEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVT---GNITISGYPKKQETFA 899
L ++ G + G G GKTTL+ + + Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTI-----STYLKPLKGEIIYNGVPIT-KVKG 78
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
+I + + I +++V + L A L K K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1018
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1019 VVCTIHQPSIDIFEAFDELFLLKRG 1043
++ + D L +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 38/251 (15%), Positives = 77/251 (30%), Gaps = 70/251 (27%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE---- 222
+L+ ++ I G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 223 --FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
F+P+ +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
L+ + + + +S G +RV L+
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHIL---RGTTLISLLQPAPEAYDLFDDII 397
A+ + +D+ +D + ++ + I + +G +IS + E D
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKV----LKSILEILKEKGIVIIS----SREELSYCDVNE 201
Query: 398 LISDGQIVYQG 408
+
Sbjct: 202 NLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 33/230 (14%)
Query: 826 MPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVT- 883
M M+L+ V + L +SG R G + L+G GAGK+TL+ +AG G +
Sbjct: 1 MSIVMQLQDV-AESTRL-GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 884 GNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIE 943
+ + + A Y Q V+ L + ++ +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTEL----LN 108
Query: 944 EVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 996
+V + L+ N LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 997 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
LD + + + + G +V + H D+ +LLK G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 50/265 (18%), Positives = 81/265 (30%), Gaps = 74/265 (27%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSAT 69
Query: 227 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV--------TT 335
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDV---------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL--- 392
+ Q +DE LD + + L +G ++ +DL
Sbjct: 146 PQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQ--QGLAIVMSS------HDLNHT 196
Query: 393 ---FDDIILISDGQIVYQGPREHVL 414
L+ G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 34/223 (15%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKK 894
L ++ G + A++G G GK+TL+D+L G R G +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------- 63
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLL-----YSAWLRLSPEVDSKTRKMFIEEVMELV 949
+ G+ Q +V + +L + P + ++ +
Sbjct: 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA-KP---KSHDYQVAMQALDYL 116
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
L L + LS QR+ + IA + + +I +DEPTS LD IV+ +
Sbjct: 117 NLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 1010 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051
+ TVV T HQP+ + ++ LL + G
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 56/251 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRLYGRVTYNGHNMDEF 223
+ + ++ + G + +LG GK+TLL L G + + +Y + +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGF-------- 70
Query: 224 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
VPQ +V + + G R + A+ + D
Sbjct: 71 VPQF-------FSSPFA-YSVLDIVLM-------G-RSTHINTFAKPKSH-------DYQ 107
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
V M+A L L L A +SGGQR+ + +
Sbjct: 108 VAMQA---------------LDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASEC 147
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403
+ +DE ++ LD + +++ L T + + QP + + + +L++
Sbjct: 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN 206
Query: 404 IVYQGPREHVL 414
+ G ++L
Sbjct: 207 FKF-GETRNIL 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 8e-19
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 35/237 (14%)
Query: 793 ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLV------LLNSV 846
E I L F +L F + D+ + R L +LN
Sbjct: 312 EGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE 371
Query: 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARISGY 904
G F + +MG G GKTTL+ +LAG + G + +S P+K I+
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK------IA-- 423
Query: 905 CEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGV 964
TV + F +V++ + ++ + V
Sbjct: 424 ------PKFPGTVRQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV----- 465
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1020
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 15/180 (8%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNIT---ISGYPKKQETFARISGYC 905
RPG + L+G G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 906 EQND--IHSPQVTVYESLLYSAWLRLSPE---VDSKTRKMFIEEVMELVELNLLRQALVG 960
E + I PQ ++ E + + ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR--- 217
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
+ LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 218 --DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 56/211 (26%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
+ + +L G + +++G +GKTTL+ LAG L G
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---------EG--- 407
Query: 221 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+ +P+ + Q TVR+
Sbjct: 408 -QDIPKLNVSMKPQKIAPKFPGTVRQ---------------------------------- 432
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
+F K + TD ++K L +D D V +SGG+ +RV L
Sbjct: 433 ---LFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFI 371
PA + +DE S LDS +R+FI
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 54/335 (16%), Positives = 93/335 (27%), Gaps = 78/335 (23%)
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY--------GRVTYNGHNMDEF 223
RPG++ L+G GK+T L LAGK +L + + G + +
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 224 VP-----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
A Q+ +I ++ + + + ++ R
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKR--------- 204
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+KIL L+ V I +SGG+ +R G
Sbjct: 205 ------------------------YIKILQLE-----NVLKRDIEKLSGGELQRFAIGMS 235
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAPEAYDL 392
V A + DE S+ LD +R + +I S+L L
Sbjct: 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA--PTKYVICVEHDLSVLD------YL 287
Query: 393 FDDIILISDGQIVYQGPREH--VLEFFEFMGFKCPERKGV-------ADFLQEVTSRKDQ 443
D + +I VY V E + + + + T
Sbjct: 288 SDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQN 347
Query: 444 EQYWANKEEPYRFVTVKEFADAFQSFSV--GQILG 476
+ P T +F + +IL
Sbjct: 348 DSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILV 382
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 63/307 (20%)
Query: 793 ETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDR---LVLLNSVSGA 849
I E Q + + F P+ + F ++ VD+ +E + + L G
Sbjct: 319 NGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGE 378
Query: 850 FRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFARISGYCEQ 907
R G + ++G G GKTT + +LAG T G V ++T++ K Q I
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK----- 427
Query: 908 NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967
+ TVYE L + E+++ + + L V L
Sbjct: 428 ---AEYEGTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNVE-----DL 472
Query: 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQP 1026
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T + H
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-- 530
Query: 1027 SIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVS-------KIKNGYNPA 1079
D L + + S + FEG PG ++ G N
Sbjct: 531 --------DVLMI--------------DYVSDRLIVFEGEPGRHGRALPPMGMREGMNRF 568
Query: 1080 TWMLEVT 1086
+ +T
Sbjct: 569 LASVGIT 575
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 64/301 (21%), Positives = 108/301 (35%), Gaps = 82/301 (27%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
+ L+ G IR G + ++GP GKTT + LAG + + G+V ++
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWDL--- 417
Query: 221 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
T AY Q+ E TV E +L+++ + +
Sbjct: 418 -------TVAYKPQYIKAEYEGTVYE----------------LLSKIDSSKLNSNFY--- 451
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
T+ +LK LG+ D V D +SGG+ +RV L+
Sbjct: 452 ------------------KTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLL 487
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-----SLLQPAPEAYDLFDD 395
A + +DE S LD + ++R + T L+ ++ D D
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI-------DYVSD 540
Query: 396 IILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE--VTSRKDQEQY--WANKE 451
+++ +G+ G L R+G+ FL +T R+D + ANKE
Sbjct: 541 RLIVFEGEPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDPDSGRPRANKE 590
Query: 452 E 452
Sbjct: 591 G 591
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 18/188 (9%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR----KTTGYVTGNITISGYPKK-- 894
+ + G++ ++G G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 895 QETFARISGYCEQNDIHSPQVTVYESLL-YSAWLRLSPEVDSKTRKMFIEEVMELVEL-N 952
Q F R+ E + PQ Y LL + ++ + EEV++ +EL N
Sbjct: 165 QNYFERLKN-GEIRPVVKPQ---YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELEN 220
Query: 953 LLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
+L + ++ LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 221 VLDRE------LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 1013 VDTGRTVV 1020
+ G+ V+
Sbjct: 275 ANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 45/233 (19%)
Query: 156 LNILSSRKKHIT-------ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR 208
+N+ + + I++ G + ++GP +GKTT + LAG+L +L
Sbjct: 87 VNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL- 145
Query: 209 LYGRVTYNGHN-MDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTEL 267
+ N + F Y + V+ +Y L
Sbjct: 146 --CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP-------------QYVDLLPK 190
Query: 268 ARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISG 327
A + K ++ K + ++K L L+ V D + +SG
Sbjct: 191 AVKGKVR--------ELLKKVDEVG------KFEEVVKELELE-----NVLDRELHQLSG 231
Query: 328 GQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI 380
G+ +RV L+ A +F DE S+ LD ++ +R+ + G ++
Sbjct: 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKAVL 282
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-18
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 51/258 (19%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG---KLDSSLRLYGRV-TYNGHNMDE 222
TILK +S I G +L G +GKTTLL L ++ L+G++ G++ +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAET 94
Query: 223 ------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
FV + V + + S + +G Y+ + + R +A
Sbjct: 95 VRQHIGFVSHSLLEKFQEG------ERVIDVVI-SGAFKSIG-VYQDIDDEIR-NEA--- 142
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
+LK++G+ A I +S G+++RV
Sbjct: 143 ------------------------HQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIA 173
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396
L+G Q +DE + GLD +++ L +I + E F I
Sbjct: 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI 233
Query: 397 ILISDGQIVYQGPREHVL 414
+L+ DGQ + QG E +L
Sbjct: 234 LLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 41/263 (15%)
Query: 796 TEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVL 855
+ + G+V + D + + + +L +S G
Sbjct: 3 SHHHHHHSSGLVPRGSHMLIQLDQIGRM---------KQ---GKTIL-KKISWQIAKGDK 49
Query: 856 TALMGVTGAGKTTLMDVLAGR--KTTGYVT--GNITISGYPKKQETFARISGYCEQNDIH 911
L G+ GAGKTTL+++L T+G V G + + I G+ +
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI-GFVSH-SLL 107
Query: 912 ---SPQVTVYESLL---YSA---WLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP 962
V + ++ + + + + E+ ++ ++++LV ++ Q +G
Sbjct: 108 EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEA-----HQLLKLVGMSAKAQQYIG-- 160
Query: 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTVDTGRTVV 1020
LST +++R+ IA L+ P ++ +DEP +GLD A ++ + + ++
Sbjct: 161 ---YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI 217
Query: 1021 CTIHQPSIDIFEAFDELFLLKRG 1043
H +I F ++ LLK G
Sbjct: 218 YVTHFIE-EITANFSKILLLKDG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L G + G + ++G G GKTT + +LAG T G + ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
I + TVYE L + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1019
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1020 V 1020
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 57/286 (19%), Positives = 104/286 (36%), Gaps = 80/286 (27%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
L+ G I+ G + ++GP GKTT + LAG + + G++ ++ + PQ
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ- 354
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
YI E TV YE+L+++ + +
Sbjct: 355 ---YIKAD----YEGTV----------------YELLSKIDASKLNSNFY---------- 381
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
T+ +LK LG+ D V + +SGG+ +RV L+ A +
Sbjct: 382 -----------KTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-----SLLQPAPEAYDLFDDIILISDG 402
+DE S LD + ++R + T L+ ++ + D +++ +G
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 403 QIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE--VTSRKDQEQY 446
+ G L R+G+ FL +T R+D +
Sbjct: 478 EPGKYG---RALPPM-------GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 36/187 (19%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGR----KTTGYVTGNITISGYPKK--QETFARISGY 904
+ G++ ++G G GK+T + +LAG+ + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 905 CEQNDI---HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
+I PQ ++ K K + E+++ + + +V
Sbjct: 104 ---GEIRPVVKPQYV---------------DLIPKAVKGKVIELLKKADETGKLEEVVKA 145
Query: 962 PGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1013
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 1014 DTGRTVV 1020
+ G++V+
Sbjct: 206 EEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 58/341 (17%), Positives = 114/341 (33%), Gaps = 90/341 (26%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+ +++ G + ++GP +GK+T + LAG+L +L +
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDN-------- 79
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP-----D 281
D I E L + K I+P D
Sbjct: 80 ------DSWDGVIRAFRGNE-----------------LQNYFEKLKNGEIRPVVKPQYVD 116
Query: 282 LDVFMKAAATEGQEASVVT--------DYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
L +G+ ++ + ++K L L+ V + I+ +SGG+ +RV
Sbjct: 117 LIPKA----VKGKVIELLKKADETGKLEEVVKALELE-----NVLEREIQHLSGGELQRV 167
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAP 387
L+ A +F DE S+ LD ++R+ G +++ ++L
Sbjct: 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVLD--- 222
Query: 388 EAYDLFDDIILISDGQIVY------QGPREHVLEFF------EFMGFKCPERKGVADFLQ 435
L D I ++ VY +G R + EF E + F+ P +
Sbjct: 223 ---YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIKFTKTGE 278
Query: 436 EVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQILG 476
V ++ + + Y ++ + G+++G
Sbjct: 279 RVEIERETLVTYPRLVKDYGSFRLE--VEPG-EIKKGEVIG 316
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 33/207 (15%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP-KKQETFARISGYCEQN-D 909
G ++G G+GKTTL+ ++G +GNI I+G +K + R S + +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY---SGNIFINGMEVRKIRNYIRYSTNLPEAYE 85
Query: 910 IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL--NLLRQALVGLPGVNGL 967
I VTV + + L+ + E+++ ++L +LR+ + L
Sbjct: 86 IG---VTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRK------LYKL 129
Query: 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1027
S Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 1028 IDIFEAF---DELFLLKRGGQEIYVGP 1051
++ + G +
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 58/259 (22%)
Query: 160 SSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHN 219
S + L+ ++ + G ++LGP SGKTTLL A++G L S G + NG
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYS----GNIFINGME 66
Query: 220 MDEFVPQ-RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
+ + R + + + ++ +TV + + +G+ R+
Sbjct: 67 VRKIRNYIRYSTNLPEAYEIG---VTVNDIVYLYEELKGL-----------DRDLF---- 108
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
+LK L L + + +S GQ V T
Sbjct: 109 -----------------------LEMLKALKL----GEEILRRKLYKLSAGQSVLVRTSL 141
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
L + +DE +D++ I ++++ G I + +
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLYKEYKA 196
Query: 398 LISDGQIVYQ-GPREHVLE 415
G + +LE
Sbjct: 197 YFLVGNRLQGPISVSELLE 215
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 59/256 (23%), Positives = 91/256 (35%), Gaps = 58/256 (22%)
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETF 898
L +G + G + ++G G GKTT +L G G VT I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
+ TV + +L + + T F EEV + + L+ L ++
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
V N LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1019 VVCTI-HQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFEGNPGVS------- 1070
V I H D + + I F+G P +
Sbjct: 438 VTFIIDH----------DLSIH--------------DYIADRIIVFKGEPEKAGLATSPV 473
Query: 1071 KIKNGYNPATWMLEVT 1086
+K G N LEVT
Sbjct: 474 TLKTGMNEFLRELEVT 489
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 84/296 (28%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
+K L +G + G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQIL 332
Query: 221 DEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 281 DLDV---FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
D V A+ +S + + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-----SLLQPAPEAYDL 392
L A + +D+ S+ LD + + ++++ + T I S+ D
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH-------DY 451
Query: 393 FDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE--VTSRKDQEQY 446
D I++ G+ G + + G+ +FL+E VT R+D E
Sbjct: 452 IADRIIVFKGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-11
Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 64/322 (19%)
Query: 175 IIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQ 234
+ + +LG GKTT+L LAG++ + + F + Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
+ L + Q E ++ + +
Sbjct: 81 ------LYSN--ELKIVHKIQ----YVEYASKFLKGTVNEIL---------------TKI 113
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
+ D + ++L + + ++ +SGG +R+ L+ A + D+ S+
Sbjct: 114 DERGKKDEVKELLNMT-----NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLI------SLLQPAPEAYDLFDDIILISDGQIVYQG 408
LD + ++R+ +L+ +I +L L D I +I VY
Sbjct: 169 LDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDLIHIIYGESSVYGR 219
Query: 409 PRE-----HVLEFF-------EFMGFKCPERKGVADFLQEVTSRKDQEQYWANKEEPYRF 456
+ + F E M + E K + + ++ KD + +
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM---KWTKII 276
Query: 457 VTVKEFADAFQSFSV--GQILG 476
+ +F + G+I+G
Sbjct: 277 KKLGDFQLVVDNGEAKEGEIIG 298
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 25/186 (13%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGY------ 904
+ + ++G G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 905 -----CEQNDIHSPQVTVYESLLYSAWLR-LSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
E +H Q Y S + + ++D + + +EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGK---KDEVKELLNMTNLWN-- 133
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1018
N LS +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 134 ---KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKY 189
Query: 1019 VVCTIH 1024
V+ H
Sbjct: 190 VIVVDH 195
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 4e-16
Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 43/243 (17%)
Query: 814 SLTFDDV--TYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
+ +V + P E K L++ VS G + G TG+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKK---ALEN-------VSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 872 VLAG--RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSP--QV---TVYESLLYS 924
++AG T +G++ G KK R G Q P Q V++ + ++
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFDEVAFA 103
Query: 925 AW-LRLSPEVDSKTRKMFIEEVMELVELN---LLRQALVGLPGVNGLSTEQRKRLTIAVE 980
+ +++ ME V L+ + P LS +++R+ IA
Sbjct: 104 VKNFYPDRDPVPL-----VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASV 152
Query: 981 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040
+V P I+ +DEP GLD ++R V G+TV+ H + D + +L
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVL 211
Query: 1041 KRG 1043
++G
Sbjct: 212 EKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 54/256 (21%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
L+ VS +I G L+ G SGK+TLL +AG ++ + G V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 229 AAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
Q+ + V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG-----ISGGQRKRVTTGEMLVGP 342
++ +GLD + + +SGG+++RV ++V
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRVAIASVIVHE 156
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402
+DE GLD ++ + ++ G T+I + + D ++++ G
Sbjct: 157 PDILILDEPLVGLDREGKTDLLRIVEKWKT--LGKTVILISHDIETVINHVDRVVVLEKG 214
Query: 403 QIVYQGPREHVLEFFE 418
+ V+ G R LE ++
Sbjct: 215 KKVFDGTRMEFLEKYD 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 102/691 (14%), Positives = 201/691 (29%), Gaps = 209/691 (30%)
Query: 138 LPTFF-NFCANIIEGLLNSLNILSSRK-KHITILKG-VSGIIRPGRMTLLLGPPASGKTT 194
F NF ++ + S ILS + HI + K VSG +R LL + +
Sbjct: 26 EDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLR--LFWTLL---SKQEEM 78
Query: 195 LLLALAGKLDSSLRLYG------RVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETL 248
+ + L + Y + +M T YI Q D + V
Sbjct: 79 VQKFVEEVLRIN---YKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQV---- 125
Query: 249 AFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF-MKAAATEGQEASVVTDYILKIL 307
F+ V SR + +L R+ ++P ++ + + + G+ + +
Sbjct: 126 -FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS---GK--TW--------V 166
Query: 308 GLDVCADTMVGDEMIRGI---SGGQRKRVTTGEMLVGPAQAFFMD---EISTGLDSSTTF 361
LDVC V +M I + E ++ Q ++ D S+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSS-- 221
Query: 362 QIVNSLRQFIHILRGTTLISLL--QPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEF 419
+++ IH ++ L LL +P + ++ + +
Sbjct: 222 ----NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNV---QNAKAW------------NA 261
Query: 420 MGFKCP----ER-KGVADFLQEVTSRKDQEQYWANKEEPYRFVTVKEFADAFQSFSVGQI 474
C R K V DFL T+ +++ + V +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTH---------------ISLDHHSMTLTPDEVKSL 306
Query: 475 LGDELGIPFDK-----TKSHPAALTTKKYGVGKKESLKACNSRELLLMKRNSFVYFFKLF 529
L L ++P L S+ A E + ++ + +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL-----------SIIA----ESIRDGLATWDNWKHVN 351
Query: 530 --QLTTIALVTMTLFFRTKMHRDSVTDGVIYAGATFFIIIMIMFNGMAEISMTIAKL-PI 586
+LTTI I ++ L P
Sbjct: 352 CDKLTTI------------------------------------------IESSLNVLEPA 369
Query: 587 FYKQRDLQFYPSWAYAFPTWIPKIPISFVEVAVWVFSTYYVIGFDPNAGRFFRQYLLLLF 646
Y++ + + FP IP + + +W + N + + L+
Sbjct: 370 EYRKM----FDRLS-VFPPSA-HIPTILLSL-IWFDVIKSDVMVVVN--KLHKYSLVEKQ 420
Query: 647 VNQMAS---ALFRLIAATGRNLVV--ANTFGAFALLLLYALGGFVLNREDIKSWWIWAYW 701
+ +++ + N + + + + + D Y+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-------QYF 473
Query: 702 CSPLMY----AQNAIMVNEF----LGHSW--RKILPNTTEPLG----VEVLQS----RGF 743
S + + ++ + F L + +KI ++T + LQ + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 744 FTDSY-WYWLGVGALLGFIILFNIGFALALS 773
D+ Y V A+L F L I L S
Sbjct: 534 ICDNDPKYERLVNAILDF--LPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 4e-11
Identities = 90/640 (14%), Positives = 171/640 (26%), Gaps = 196/640 (30%)
Query: 720 HSWRKILPNTTEP----LGV-EVLQS-RGFFTDS-YWYWLGV-----GALLGFIILFNIG 767
+ ++ IL + +V + + + + G L F L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 768 FALALSFL--------NWSADDIRRRDSSSQSLETITEANQPKRRGMVLPFEPHSLTFDD 819
+ F+ + I+ TE QP + E ++D
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIK------------TEQRQPSMM-TRMYIEQRDRLYND 122
Query: 820 VT----YSVDMPQEM-KLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTL-MDVL 873
Y+V Q KLR L L RP + GV G+GKT + +DV
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALL-EL----------RPAKNVLIDGVLGSGKTWVALDVC 171
Query: 874 AGRKTTGYVTGNI---TISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
K + I + + + Q D P T + LR+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIH 228
Query: 931 PEVDSKTRKMFIE----------------EVMELVELN---LL--RQALVGLPGVNGLST 969
+ ++ R++ + L+ LL R V + LS
Sbjct: 229 -SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLSA 283
Query: 970 EQRKRLTI-----------AVELVANPSIIFMDEPTSGLDARAAAI----------VMRT 1008
+++ L+ ++D L +R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 1009 VRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYFE 1064
T D + V C TI + S+++ E E ++++ + F
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEP-AEY-------RKMF---------DRLSVFP 382
Query: 1065 GNPGVSKIKNGYNPAT-----WMLEVTSPSQETALGIDFADIYKSSELYRRNK------- 1112
+ + I P W + S ++K S + ++ K
Sbjct: 383 PS---AHI-----PTILLSLIWFDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIP 429
Query: 1113 ALIKDLSKPAPGSKDLH--FDTQYAQSFFTQCMACLWKQRWSYW-RNPPYTAVRFLSTTI 1169
++ +L LH Y + + PPY
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNI-----------PKTFDSDDLIPPYL--------- 469
Query: 1170 TSLTFGAMFWDMG--TKMTKQQDLFNAMGSMYTAVLFIGILNAVAVQPVVAIERTVFYRE 1227
+ +G K + + ++ F+ E+ + +
Sbjct: 470 ----DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--------------EQKIRHDS 511
Query: 1228 RAAGMYSGMAYAFAQVLIEIPYIFVQAVTYGLIVYAMMQF 1267
A + Q+ PYI Y +V A++ F
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-10
Identities = 82/586 (13%), Positives = 178/586 (30%), Gaps = 171/586 (29%)
Query: 73 DVDNLGLQE--RQLL----IDKLVKVPDVDNEKFLL------KLKNRFDRVGISMPEIEV 120
+ D +Q+ + +L ID ++ D + L K + + + I
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 121 RF--EHLKVEAEAYVGSRALPT-FFNFCANIIEGLLNSLNILS----SRKKHITILKGVS 173
+F +K E ++ T + + L N + + SR + L+
Sbjct: 92 KFLMSPIKTEQRQ----PSMMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 174 GIIRPGRMTLLLGPPASGKTTLLLALA------------------GKLDSS-------LR 208
+RP + L+ G SGKT + L + +S +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 209 LYGRVTYNGHNMDEF---VPQRTAAYISQHDVHIGEMTVRETL-------------AFSA 252
L ++ N + + + R + ++ + L AF+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 253 RCQG-VGSRYEMLT---------ELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDY 302
C+ + +R++ +T ++ + + PD + +K Q+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--- 321
Query: 303 ILKILGLDVCADTMVGDEMIRGISGGQR-KRVTTGEM---------LVGPAQ-------- 344
+L + ++ + + G++ K V ++ ++ PA+
Sbjct: 322 VLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 345 AFFMDE--ISTGL--------DSSTTFQIVNSLRQFIHILRGTTLISLL--QPAPEAY-- 390
+ F I T L S +VN L ++ SL+ QP
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTISI 428
Query: 391 -DLFDDIILISDG------QIV--YQGPREHVLE----------FFEFMGFKCPERKGVA 431
++ ++ + + IV Y P+ + F+ +G
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------- 480
Query: 432 DFLQEVTSRKDQEQYWANKEEPY---RFVTVKEFADAFQSFSVGQILGDELGIPFDK--- 485
L+ + + + + RF+ K D+ + G IL + F K
Sbjct: 481 --LKNI----EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 486 TKSHPA----ALTTKKYGVGKKESLKACNSRELL---LMKRNSFVY 524
+ P + +E+L +LL LM + ++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 49/215 (22%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYP--KKQETF 898
L ++ + G +TA++G G GK+TL G + ++G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG----RILFDNKPIDYSRKGI 79
Query: 899 ARIS---GYCEQNDIHSP--QV---TVYESLLYSAW-LRLSPEVDSKTRKMFIEEVMELV 949
++ G Q+ P Q+ +VY+ + + A ++L + + + R ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED-EIRKR---VDNALKRT 131
Query: 950 ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1009
+ L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1010 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ G T++ H + D +F++K G
Sbjct: 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 56/279 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRT 228
LKG++ I+ G +T +LG GK+TL G L S GR+ ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 229 AAYISQH--------DVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+ + D + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
LK G++ D +S GQ+KRV +LV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400
+ +DE + GLD +I+ L + + G T+I D++ ++
Sbjct: 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVMK 218
Query: 401 DGQIVYQGPREHVL---EFFEFMGFKCPERKGVADFLQE 436
+G+++ QG + V E + + P + + L+E
Sbjct: 219 EGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTG-YVTGNITISGYPKKQETFA 899
L +S + + G +++G +G+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 900 R---ISGYCEQ--NDIHSPQVTVYES----LLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
R + G+ Q I P++T E+ +L K K E L+
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAK---ERGEYLLS 126
Query: 951 LNLLRQALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
+GL P LS +++R+ IA L P ++F DEPT LD+
Sbjct: 127 E-------LGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 1004 IVMRTVRNTVDTGRTVVCTIHQPSI 1028
VM + G ++V H+ +
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 64/251 (25%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEFVP 225
ILKG+S ++ G ++G SGK+TLL L G LD + G+V G +D
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTE----GKVFLEGKEVDYTNE 73
Query: 226 QRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275
+ + ++ +G E+T E + G + +E+
Sbjct: 74 KELSLLRNRK---LGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG-- 121
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTT 335
+ L LGL D + +SGG+++RV
Sbjct: 122 ------------------EYL-------LSELGL---GDKL--SRKPYELSGGEQQRVAI 151
Query: 336 GEMLVGPAQAFFMDEISTG-LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394
L F DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPILLFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELTH 207
Query: 395 DIILISDGQIV 405
+ + DG++V
Sbjct: 208 RTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 40/207 (19%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTG-YVTGNITISGYPKKQETFA 899
L +V+ + G ++MG +G+GK+T+++++ + T G NI + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 900 R---ISGYCEQ--NDIHSPQVTVYES----LLYSAWLRLSPEVDSKTRKMFIEEVMELVE 950
R I G+ Q N I P +T E+ L++ + + + R+ + +E ++
Sbjct: 81 RRDKI-GFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERR---KRALECLK 130
Query: 951 LNLLRQALVGL--------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1002
+ L P N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 131 M-------AELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 1003 AIVMRTVRN-TVDTGRTVVCTIHQPSI 1028
+M+ ++ + G+TVV H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 79/263 (30%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLYGRVTYNGHNMDEF 223
I LK V+ I+ G ++GP SGK+T+L + G LD + G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTE----GEVYIDNIKTNDL 72
Query: 224 VPQRTAAYISQHDVHIG----------EMTVRET----LAFSARCQGVGSRYEMLTELAR 269
IG +T E L F R + R
Sbjct: 73 DDDELTKIRRDK---IGFVFQQFNLIPLLTALENVELPLIFKYR-GAMSGE-------ER 121
Query: 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG---DEMIRGIS 326
R++A E LK+ L + +++ S
Sbjct: 122 RKRA--------------------LEC-------LKMAEL---EERFANHKPNQL----S 147
Query: 327 GGQRKRVTTGEMLVGPAQAFFMDEISTG-LDSSTTFQIVNSLRQFIHILRGTTLISL--- 382
GGQ++RV L D+ T LDS T +I+ L++ ++ G T++ +
Sbjct: 148 GGQQQRVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVVVVTHD 205
Query: 383 LQPAPEAYDLFDDIILISDGQIV 405
+ A + II + DG++
Sbjct: 206 INVARFG----ERIIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQ- 895
L+ VS + G +T ++G G+GK+TL++V+ G + G V N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 896 ------ETFARISGYCEQNDIHS-PQVTVYE-----------SLLYSAWLRLSPEVDSKT 937
TF Q ++TV E S L S + + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 938 RKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 997
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 998 DARAAAIVMRTVRNTVDTGRTVV 1020
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 55/221 (24%), Positives = 81/221 (36%), Gaps = 45/221 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFVPQ 226
L GVS + G +TL++GP SGK+TL+ + G K D GRV + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE-----GRVYFENKDITNKEPA 77
Query: 227 RTAAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPD 281
Y I Q EMTV E L C G + + ++
Sbjct: 78 ELYHYGIVRTFQT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 282 LDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVG 341
M A + IL+ L L D G+ +SGGQ K V G L+
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 170
Query: 342 PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR--GTTLI 380
+ MDE G+ + + + L+ G T +
Sbjct: 171 NPKMIVMDEPIAGVAPGLA----HDIFNHVLELKAKGITFL 207
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 9e-11
Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 74/259 (28%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTYNGHNMD 221
IL+ +S +P + GP GK+T+ LL R Y G +T +G +D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL---------ERFYQPTAGEITIDGQPID 67
Query: 222 EFVPQ--RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+ R+ ++SQ D I T+RE L + G++
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEG 102
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGI--SGGQRKRVTT 335
D + + + + ++ + L +T VG+ RG+ SGGQR+R+
Sbjct: 103 DYTDEDLWQVL-----DLAFARSFVENMPDQL----NTEVGE---RGVKISGGQRQRLAI 150
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPAPEA 389
+ + +DE + LDS + + +L +++G TTL+ S + A
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAHRLSTIVDA--- 204
Query: 390 YDLFDDIILISDGQIVYQG 408
D I I GQI G
Sbjct: 205 ----DKIYFIEKGQITGSG 219
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 53/225 (23%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM---- 870
L+ V ++ D D +L +S +P + A G +G GK+T+
Sbjct: 2 LSARHVDFAYD-----------DSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Query: 871 ---DVLAGRKTTGYVTGNITISGYPKKQETFA----RISGYCEQ-----NDIHSPQVTVY 918
AG ITI G P + +I G+ Q T+
Sbjct: 50 RFYQPTAGE---------ITIDGQPIDNISLENWRSQI-GFVSQDSAIMAG------TIR 93
Query: 919 ESLLYSAWLRLSP-EVDSKTRKMFIEE-VMELVE-LNLLRQALVGLPGVNGLSTEQRKRL 975
E+L Y + ++ F V + + LN VG GV +S QR+RL
Sbjct: 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN----TEVGERGVK-ISGGQRQRL 148
Query: 976 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
IA + NP I+ +DE T+ LD+ + ++V + + +++ GRT +
Sbjct: 149 AIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTL 192
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 50/253 (19%)
Query: 808 LPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKT 867
L F+ + F++V +S D R L VS PG AL+G +GAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA-----------DGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94
Query: 868 TLM-------DVLAGRKTTGYVTGNITISGYPKKQETFA---RISGYCEQ-----NDIHS 912
T++ D+ +G I I G Q T A G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 913 PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELVELNLLRQALVGLPGVNGLSTEQ 971
T+ +++ Y + EV++ + I + +M E + VG G+ LS +
Sbjct: 143 ---TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEG---YRTQVGERGLK-LSGGE 195
Query: 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1031
++R+ IA ++ P II +DE TS LD + ++ V RT + H+ S +
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VV 253
Query: 1032 EAFDELFLLKRGG 1044
A D++ ++K G
Sbjct: 254 NA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 85/272 (31%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDE 222
L+ VS + PG+ L+GP +GK+T+L L R Y G + +G ++ +
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-------FRFYDISSGCIRIDGQDISQ 120
Query: 223 F-----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
VPQ T + +D T+ + + + R E+ E
Sbjct: 121 VTQASLRSHIGVVPQDTVLF---ND------TIADNIRY-GRVTA--GNDEV-------E 161
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG--ISGGQ 329
AA +AA I+ T VG+ RG +SGG+
Sbjct: 162 AAA------------QAAGIHD-----------AIMAFPEGYRTQVGE---RGLKLSGGE 195
Query: 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLL 383
++RV ++ +DE ++ LD+S I SL + + TT++ S +
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTV 252
Query: 384 QPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
A D I++I DG IV +G E +L
Sbjct: 253 VNA-------DQILVIKDGCIVERGRHEALLS 277
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARI 901
LLN + + G G GK+TLM +A + + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEE--CRT 497
Query: 902 SGYCEQN-DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
Y E + D +V + + E T++ I++ + A+
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVL 873
++ F DV +S L ++ G AL+G TG+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTN---HRTLKS-------INFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 874 AGRKTTGY-VTGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPQVTVYESLLYS 924
R Y G+I I G + I G Q N+ T+ ++LY
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 925 AWLRLSPEVDSKTRKMFIEE-VMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVA 983
EV T+ + + + L + +VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEALPKK---WDTIVGNKGMK-LSGGERQRIAIARCLLK 172
Query: 984 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + LL +G
Sbjct: 173 DPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKG 229
Query: 1044 G 1044
Sbjct: 230 K 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 86/276 (31%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY---GRVTYNGHN 219
+ + LK ++ I G L+G SGK+T+ L R Y G + G N
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKN 82
Query: 220 MDEF-----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELA 268
++++ VPQ D + T++ + +
Sbjct: 83 VNKYNRNSIRSIIGIVPQ---------DTILFNETIKYNILYG----------------- 116
Query: 269 RREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGI-- 325
K D + +KA +++ + D+I + D T+VG+ +G+
Sbjct: 117 --------KLDATDEEVIKAT-----KSAQLYDFIEALPKKWD----TIVGN---KGMKL 156
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI---- 380
SGG+R+R+ L+ + DE ++ LDS T + ++ + + T +I
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED---LRKNRTLIIIAHR 213
Query: 381 -SLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
S + A + IIL++ G+IV +G + +L+
Sbjct: 214 LSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 83/244 (34%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM---- 870
+TF ++ + D V+L++++ + + G + ++G +G+GK+TL
Sbjct: 8 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56
Query: 871 ---DVLAGRKTTGYVTGNITISGYPKK---------------QET--FARISGYCEQNDI 910
G+ + I G+ Q+ R
Sbjct: 57 RFYIPENGQ---------VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR---------- 97
Query: 911 HSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-------NLLRQA---LVG 960
++ +++ + +P + +E+V+ +L + LR+ +VG
Sbjct: 98 -----SIIDNISLA-----NPGMS-------VEKVIYAAKLAGAHDFISELREGYNTIVG 140
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
G LS QR+R+ IA LV NP I+ DE TS LD + ++MR + GRTV+
Sbjct: 141 EQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVI 198
Query: 1021 CTIH 1024
H
Sbjct: 199 IIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 75/260 (28%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTYNGHNM 220
IL ++ I+ G + ++G SGK+TL L+ R Y G+V +GH++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---------QRFYIPENGQVLIDGHDL 73
Query: 221 DEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
P R + Q D + ++ + ++ +
Sbjct: 74 ALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------N 107
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGI--SGGQRKRVT 334
P ++ + AA + + D+I ++ G + T+VG+ +G SGGQR+R+
Sbjct: 108 PGMSVEKVIYAA-----KLAGAHDFISELREGYN----TIVGE---QGAGLSGGQRQRIA 155
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPAPE 388
LV + DE ++ LD + I+ ++ + I +G T +I S ++ A
Sbjct: 156 IARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAHRLSTVKNA-- 210
Query: 389 AYDLFDDIILISDGQIVYQG 408
D II++ G+IV QG
Sbjct: 211 -----DRIIVMEKGKIVEQG 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 59/287 (20%), Positives = 105/287 (36%), Gaps = 78/287 (27%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
L G++ I G + ++G GK++LL AL ++D ++ G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP---DPDLDV 284
+ AY+ Q I ++RE + F G + E I+ PDL++
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLEE----PYYRSV--IQACALLPDLEI 112
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKRVTTGEMLVGP 342
TE +G+ +G+ SGGQ++RV+ +
Sbjct: 113 LPSGDRTE------------------------IGE---KGVNLSGGQKQRVSLARAVYSN 145
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISL----LQPAPEAYDLFDDIIL 398
A + D+ + +D+ I ++ +L+ T I L + P+ D II+
Sbjct: 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMSYLPQV----DVIIV 200
Query: 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVTSRKDQEQ 445
+S G+I G + +L A+FL+ S
Sbjct: 201 MSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 60/247 (24%)
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDV 872
+S+T + T++ L G+ + + G L A++G G GK++L+
Sbjct: 2 NSITVRNATFTWARSDPPTLNGI-----------TFSIPEGALVAVVGQVGCGKSSLLSA 50
Query: 873 LAG--RKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLS 930
L K G+V +++ Y Q AW++
Sbjct: 51 LLAEMDKVEGHVAIKGSVA--------------YVPQ----------------QAWIQND 80
Query: 931 PEVD-----SKTRKMFIEEVME---LVE-LNLLR---QALVGLPGVNGLSTEQRKRLTIA 978
+ + + + V++ L+ L +L + +G GVN LS Q++R+++A
Sbjct: 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLA 139
Query: 979 VELVANPSIIFMDEPTSGLDARAAAIVMRTV--RNTVDTGRTVVCTIHQPSIDIFEAFDE 1036
+ +N I D+P S +DA + V + +T + H + D
Sbjct: 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHS--MSYLPQVDV 197
Query: 1037 LFLLKRG 1043
+ ++ G
Sbjct: 198 IIVMSGG 204
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV 224
I +KG+ + G++ L+G +GKTT L A+AG + + G++ +NG ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKP 74
Query: 225 PQRTAAY-ISQHDV----HI-GEMTVRETL---AFSAR-CQGVGSRYEMLTEL-----AR 269
I+ V I E+TV E L A++ + +G+ E + L R
Sbjct: 75 AHVINRMGIAL--VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 132
Query: 270 REKAAG 275
++ G
Sbjct: 133 LKQLGG 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 6e-05
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 22/185 (11%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
+ + G + L+G GAGKTT + +AG G I +G + I
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVI- 78
Query: 903 GYCEQNDIHSPQ-------VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNLL 954
P+ +TVYE+L+ A+ R D + K +E + L L
Sbjct: 79 --NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKER 132
Query: 955 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1014
+ L G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 133 LKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 1015 TGRTV 1019
G T+
Sbjct: 188 EGTTI 192
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 8e-08
Identities = 50/241 (20%), Positives = 84/241 (34%), Gaps = 75/241 (31%)
Query: 814 SLTFDDVT--YSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMD 871
+T D+T Y+ +L ++S + PG L+G TG+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGN------------AIL-ENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 872 VLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHS-------------PQVTVY 918
T G I I G S PQ
Sbjct: 66 AFLRLLNT---EGEIQIDGV-----------------SWDSITLEQWRKAFGVIPQ---- 101
Query: 919 ESLLYSAWLR--LSP---EVDSKTRKMFIEEVMELVELNLLRQALVGLP---------GV 964
+ ++S R L P D + I +V + V L R + P G
Sbjct: 102 KVFIFSGTFRKNLDPNAAHSDQE-----IWKVADEVGL---RSVIEQFPGKLDFVLVDGG 153
Query: 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
LS ++ + +A +++ I+ +DEP++ LD I+ RT++ TV+
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEA 212
Query: 1025 Q 1025
+
Sbjct: 213 R 213
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 66/330 (20%), Positives = 117/330 (35%), Gaps = 87/330 (26%)
Query: 739 QSRGFFTDSYWYWLGVGALLG-----FIILFNIGFALALSFLNWS-----ADDIRRRDSS 788
Q+ +F+ + + G L+ F + + A+ + A D + S
Sbjct: 942 QAMMYFSYAAAFRFG-AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVS 1000
Query: 789 SQS----LETITEANQPKRRGMVLPFEPHSLTFDDVTYS----VDMPQEMKLRGVLDDRL 840
+ +E E + +G+ ++ F V ++ +P VL
Sbjct: 1001 ASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-------VLQG-- 1051
Query: 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPK 893
+S + G AL+G +G GK+T++ D +AG + + G
Sbjct: 1052 -----LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 894 KQETFARISGYCEQNDIHS--P---QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
KQ + Q I S P ++ E++ Y R+ + I
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRA--- 1144
Query: 949 VELNLLRQA-----LVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPT 994
++A + LP G G LS Q++R+ IA LV P I+ +DE T
Sbjct: 1145 -----AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199
Query: 995 SGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1024
S LD + +V + + GRT + H
Sbjct: 1200 SALDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 70/218 (32%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKK- 894
L ++ + G AL+G +G GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 895 --------------QET--FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTR 938
QE FA T+ E++ Y + T
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGR--------EDVTM 493
Query: 939 KMFIEEVMELVELNLLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIF 989
+E+ + V+ ++ LP G G LS Q++R+ IA LV NP I+
Sbjct: 494 ----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549
Query: 990 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1027
+DE TS LD + A+V + GRT + H+ S
Sbjct: 550 LDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 72/271 (26%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYN 216
SRK + ILKG++ ++ G+ L+G GK+T + + RLY G V+ +
Sbjct: 399 SRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM-------QRLYDPLDGMVSID 450
Query: 217 GHNMDEFVPQ--RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
G ++ + R +SQ V + T+ E + +
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPV-LFATTIAENIRY----------------------- 486
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGI--SGGQR 330
G + ++ + A + + D+I+K+ DT+VG+ RG SGGQ+
Sbjct: 487 -GREDVTMDEI--EKAV----KEANAYDFIMKLPHQF----DTLVGE---RGAQLSGGQK 532
Query: 331 KRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQ 384
+R+ LV + +DE ++ LD+ + + +L + G TT++ S ++
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK---AREGRTTIVIAHRLSTVR 589
Query: 385 PAPEAYDLFDDIILISDGQIVYQGPREHVLE 415
A D I G IV QG + ++
Sbjct: 590 NA-------DVIAGFDGGVIVEQGNHDELMR 613
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 51/266 (19%), Positives = 98/266 (36%), Gaps = 74/266 (27%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
+LK ++ I G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP---DPDLDV 284
++ SQ I T++E + F G Y+ R IK + D+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI--SGGQRKRVTTGEMLVGP 342
F + +G+ GI SGGQR R++ +
Sbjct: 116 FAEKDNIV------------------------LGE---GGITLSGGQRARISLARAVYKD 148
Query: 343 AQAFFMDEISTGLDSSTTFQIVNSLRQFIH-ILRGTTLI---SLLQPAPEAYDLFDDIIL 398
A + +D LD T +I + ++ T I S ++ +A D I++
Sbjct: 149 ADLYLLDSPFGYLDVLTEKEIFE---SCVCKLMANKTRILVTSKMEHLKKA----DKILI 201
Query: 399 ISDGQIVYQGPREHVL----EFFEFM 420
+ +G + G + +F +
Sbjct: 202 LHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 39/211 (18%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L ++ G L A+ G TGAGKT+L+ ++ G + G + SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----HSG---------R 70
Query: 901 ISGYCEQND-IHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME---LVE-LNLLR 955
IS +C Q I T+ E++++ + V++ L E ++
Sbjct: 71 IS-FCSQFSWIMP--GTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 956 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ +T + + ++ + D++ +L G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 857 ALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFARISGYCEQNDIHSP 913
L+G TGAGK+ ++++AG + G V I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 914 QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973
++VY ++ Y LR V+ R + E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 974 RLTIAVELVANPSIIFMDEPTSGLDAR 1000
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 71/260 (27%)
Query: 184 LLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFVP-QRTAAYISQ------ 234
LLGP +GK+ L +AG K D G V NG ++ P +R ++ Q
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDR-----GEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 235 HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQ 294
H ++V +A+ R V E RR +
Sbjct: 84 H------LSVYRNIAYGLR--NVERV-----ERDRRVREM-------------------- 110
Query: 295 EASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354
+ LG+ + D +SGG+R+RV LV + +DE +
Sbjct: 111 ---------AEKLGIA-----HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156
Query: 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVL 414
+D T ++ LR + ++ + EA L D++ ++ +G+IV +G + +
Sbjct: 157 VDLKTKGVLMEELRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215
Query: 415 EFFEFMGFKCPERKGVADFL 434
+ VA+FL
Sbjct: 216 S---------AKNGEVAEFL 226
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 53/272 (19%), Positives = 94/272 (34%), Gaps = 63/272 (23%)
Query: 754 VGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSL-ETITEANQPKRRGMVLPFEP 812
G + L L +R ++ Q+L + + V+
Sbjct: 281 AGTITVVFSSMIA-LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRAT 339
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM-- 870
L F +VT++ + L +++ G AL+G +G+GK+T+
Sbjct: 340 GDLEFRNVTFTYPG----------REVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 871 -----DVLAGRKTTGYVTGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPQVTV 917
D+ G I + G+ ++ T A Q ND TV
Sbjct: 389 ITRFYDIDEGH---------ILMDGHDLREYTLASLRNQVALVSQNVHLFND------TV 433
Query: 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP-------GVNG--LS 968
++ Y+ + +R E++ E + + + G NG LS
Sbjct: 434 ANNIAYA-------RTEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-06
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 74/263 (28%)
Query: 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTYNG 217
+ + L+ ++ I G+ L+G SGK+T+ L+ R Y G + +G
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT---------RFYDIDEGHILMDG 404
Query: 218 HNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
H++ E+ A +SQ +VH+ TV +A+ +R E + + E+AA
Sbjct: 405 HDLREYTLASLRNQVALVSQ-NVHLFNDTVANNIAY--------ARTEEYSR-EQIEEAA 454
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRG--ISGGQRK 331
+ A D+I K+ GL DT++G+ G +SGGQR+
Sbjct: 455 ------------RMAY--------AMDFINKMDNGL----DTIIGE---NGVLLSGGQRQ 487
Query: 332 RVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQP 385
R+ L+ + +DE ++ LD+ + I +L + + T+L+ S ++
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALD---ELQKNRTSLVIAHRLSTIEQ 544
Query: 386 APEAYDLFDDIILISDGQIVYQG 408
A D+I+++ DG IV +G
Sbjct: 545 A-------DEIVVVEDGIIVERG 560
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 81/283 (28%)
Query: 154 NSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG---KLDSSLRLY 210
+SL+ + +LK ++ I G++ + G +GKT+LL+ + G + ++
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 211 GRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270
GR+++ Q ++I T++E + +G Y+ R
Sbjct: 99 GRISF--------CSQN--SWI-MP------GTIKENI--------IGVSYDE----YRY 129
Query: 271 EKAAGIKP---DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI-- 325
IK + D+ F + +G+ GI
Sbjct: 130 RSV--IKACQLEEDISKFAEKDNIV------------------------LGE---GGITL 160
Query: 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNS-LRQFIHILRGTTLI---S 381
SGGQR R++ + A + +D LD T +I S + + + T I S
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTRILVTS 217
Query: 382 LLQPAPEAYDLFDDIILISDGQIVYQGPREHVL----EFFEFM 420
++ +A D I+++ +G + G + +F +
Sbjct: 218 KMEHLKKA----DKILILHEGSSYFYGTFSELQNLRPDFSSKL 256
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 44/213 (20%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L ++ G L A+ G TGAGKT+L+ ++ G + G + SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----HSG---------R 100
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLR---LSPEVDSKTRKMFIEEVME---LVE-LNL 953
IS +C Q S + ++ + D V++ L E ++
Sbjct: 101 IS-FCSQ-----------NSWIMPGTIKENIIGVSYDEY----RYRSVIKACQLEEDISK 144
Query: 954 LR---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1010
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1011 NTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
+ +T + + ++ + D++ +L G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 5e-07
Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 904 YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPG 963
++ +A ++ + + E+V + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 964 VNG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1011
LS +R L +A L S++ +DEPT LD ++ +
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 1012 TVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYV 1049
+ V+ H ++ +A D + + V
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 9e-07
Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 74/259 (28%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTYNGHNMD 221
L VS I G+ L+G SGK+T+ L R Y G + +GH++
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT---------RFYDVDSGSICLDGHDVR 408
Query: 222 EFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
++ R A +SQ +VH+ T+ +A+ +
Sbjct: 409 DYKLTNLRRHFALVSQ-NVHLFNDTIANNIAY------------------------AAEG 443
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRG--ISGGQRKRVTT 335
+ + +AA + ++I + GL DT++G+ G +SGGQR+RV
Sbjct: 444 EYTREQIEQAA-----RQAHAMEFIENMPQGL----DTVIGE---NGTSLSGGQRQRVAI 491
Query: 336 GEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI-----SLLQPAPEA 389
L+ A +DE ++ LD+ + I +L + + T L+ S ++ A
Sbjct: 492 ARALLRDAPVLILDEATSALDTESERAIQAALD---ELQKNKTVLVIAHRLSTIEQA--- 545
Query: 390 YDLFDDIILISDGQIVYQG 408
D+I+++ +G+I+ +G
Sbjct: 546 ----DEILVVDEGEIIERG 560
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 63/272 (23%)
Query: 754 VGALLGFIILFNIGFALALSFLNWSADDIRRRDSSSQSL-ETITEANQPKRRGMVLPFEP 812
G L L + +R ++ Q+L + +
Sbjct: 281 PGTFTVVFSAMFG-LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVN 339
Query: 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM-- 870
+ DVT++ ++ L + VS + G AL+G +G+GK+T+
Sbjct: 340 GEVDVKDVTFTYQ----------GKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 871 -----DVLAGRKTTGYVTGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPQVTV 917
DV +G I + G+ + R Q ND T+
Sbjct: 389 FTRFYDVDSGS---------ICLDGHDVRDYKLTNLRRHFALVSQNVHLFND------TI 433
Query: 918 YESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLP-------GVNG--LS 968
++ Y+A + E ++ + + + +P G NG LS
Sbjct: 434 ANNIAYAAEGEYTRE-----------QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 56/265 (21%), Positives = 101/265 (38%), Gaps = 71/265 (26%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVT 214
+ ++ +L+G++ + PG++T L+GP SGK+T+ LL LY G+V
Sbjct: 28 NHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL---------QNLYQPTGGKVL 77
Query: 215 YNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARRE 271
+G + ++ A + Q + + + RE +A+
Sbjct: 78 LDGEPLVQYDHHYLHTQVAAVGQEPL-LFGRSFRENIAY--------------------- 115
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIRGI--SGG 328
G+ P ++ A S D+I G DT VG+ G SGG
Sbjct: 116 ---GLTRTPTMEEITAVA-----MESGAHDFISGFPQGY----DTEVGE---TGNQLSGG 160
Query: 329 QRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLI-----SLL 383
QR+ V L+ + +D ++ LD+ ++ L + T L+ SL
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220
Query: 384 QPAPEAYDLFDDIILISDGQIVYQG 408
+ A I+ + +G + QG
Sbjct: 221 ERA-------HHILFLKEGSVCEQG 238
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 81/222 (36%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLM-------DVLAGRKTTGYVTGNITISGYPKK- 894
L ++ PG +TAL+G G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 895 --------------QET--FARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTR 938
QE F R + E++ Y + T
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL-------TRTPTM 123
Query: 939 KMFIEEVMELVELNLLRQA---------------LVGLPGVNGLSTEQRKRLTIAVELVA 983
EE+ + ++ VG G LS QR+ + +A L+
Sbjct: 124 ----EEITAVA-----MESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIR 173
Query: 984 NPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1024
P ++ +D TS LDA V R + + RTV+
Sbjct: 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 66/299 (22%), Positives = 109/299 (36%), Gaps = 97/299 (32%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
IL+G+S + PG + ++GP SGK+TL LAG+ D Y G V + G ++
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-----YEVTGGTVEFKGKDLLAL 89
Query: 224 VP-QRTAAYISQHDVHIGEMTVRETLAFSARCQ------GVGSRYEMLTELARREKAAGI 276
P R I +AF Q GV +++ + T L G
Sbjct: 90 SPEDRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQ 131
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR-----GISGGQRK 331
+ D F + + +L + ++++ G SGG++K
Sbjct: 132 ETLDRFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKK 171
Query: 332 RVTTGEMLV-GPAQAFFMDEISTGLDSSTTFQI---------VNSLRQ----FIHILRGT 377
R +M V P +DE +GLD I VNSLR FI +
Sbjct: 172 RNDILQMAVLEPELC-ILDESDSGLD------IDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 378 TLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436
++ ++P D + ++ G+IV G V + E +G ++
Sbjct: 225 RILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQL---------EEQGYGWLTEQ 266
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 59/195 (30%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-VT-GNITISG---------- 890
L +S PG + A+MG G+GK+TL LAGR+ Y VT G + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 891 -----------YPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAW-----LRLSPEVD 934
YP E I G V+ L +A R +D
Sbjct: 94 RAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 935 SKTRKMFIEEVMELVELN---LLRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFM 990
+ +EE + L+++ L R VN G S ++KR I V P + +
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRS-------VNVGFSGGEKKRNDILQMAVLEPELCIL 188
Query: 991 DEPTSGLDARAAAIV 1005
DE SGLD A +V
Sbjct: 189 DESDSGLDIDALKVV 203
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 103/301 (34%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLY----GRVTYNGHNMDEF 223
ILKGV+ ++ G + L+GP +GK+TL LAG + Y G + +G N+ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-----YTVERGEILLDGENILEL 72
Query: 224 VP-QRTAAYISQHDVHIGEMTVRETLAFSARCQ------GVGSRYEMLTEL-ARREKAAG 275
P +R + LAF Q GV + L A+ +
Sbjct: 73 SPDERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR--- 111
Query: 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR-----GISGGQR 330
+ + F L++L D + + G SGG++
Sbjct: 112 ---EVGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEK 149
Query: 331 KRVTTGEMLV-GPAQAFFMDEISTGLDSSTTFQI---------VNSLRQ----FIHILRG 376
KR ++LV P A +DE +GLD I VN++R + I
Sbjct: 150 KRNEILQLLVLEPTYA-VLDETDSGLD------IDALKVVARGVNAMRGPNFGALVITHY 202
Query: 377 TTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQE 436
+++ +QP D + ++ DG++V G E LE E KG ++
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALEL---------EAKGYEWLKEK 245
Query: 437 V 437
V
Sbjct: 246 V 246
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 52/186 (27%), Positives = 73/186 (39%), Gaps = 53/186 (28%)
Query: 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGY-VT-GNITISG------------------ 890
G + ALMG GAGK+TL +LAG Y V G I + G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDERARKGLFL 84
Query: 891 ---YPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVME 947
YP E + G VT+ L + +L EV +++ +E
Sbjct: 85 AFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFWTKVKKALE 127
Query: 948 LVELN---LLRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003
L++ + L R +N G S ++KR I LV P+ +DE SGLD A
Sbjct: 128 LLDWDESYLSR-------YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 1004 IVMRTV 1009
+V R V
Sbjct: 181 VVARGV 186
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
LN+VS G + ++G +GAGK+TL+ + R T G V ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 900 RIS-GYCEQ--NDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELVELNLLR 955
R G Q N + S TV+ ++ L L T K ++ V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-----NTPKDEVKRRVTELLSL---- 150
Query: 956 QALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 998
VGL + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ---VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 60/197 (30%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRLY--GRVTYNGHNMD 221
+ L V+ I G +LGP +GKTT + +AG LD S+ LY R+ +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLV-ASNGKL 75
Query: 222 EFVPQ-RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-EKA 273
P+ R + Q + +T E +AF + E+ +R E+
Sbjct: 76 IVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKMSK-----EEIRKRVEEV 124
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
A KIL + V + R +SG Q++RV
Sbjct: 125 A------------------------------KILDIH-----HVLNHFPRELSGAQQQRV 149
Query: 334 TTGEMLVGPAQAFFMDE 350
LV +DE
Sbjct: 150 ALARALVKDPSLLLLDE 166
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 38/160 (23%)
Query: 858 LMGVTGAGKTTLMDVLAG--RKTTG-------YVTGNITISGYPKKQET---FARISGYC 905
++G +GAGKTT M ++AG +TG V N + P+ ++ F
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF------- 88
Query: 906 EQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVEL-NLL----RQALVG 960
Q P +T +E++ + + + + R +EEV +++++ ++L R+
Sbjct: 89 -QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHVLNHFPRE---- 140
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 141 ------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 53/173 (30%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDEFV 224
++GVS IR G M LLGP SGKTT+L +AG + G V G + +
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-----GDVWIGGKRVTDLP 83
Query: 225 P-QRTAAYISQHDV---HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
P +R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 84 PQKRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL------ 129
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
L+ + L+ + +SGGQ++RV
Sbjct: 130 -----------------------LRFMRLE-----SYANRFPHELSGGQQQRV 154
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 837 DDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPK 893
+ VS R G + L+G +G+GKTT++ ++AG R T G V G ++ P
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL 953
++ R G QN +TVY+++ + + P+ + R V EL+
Sbjct: 85 QK----RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRF-- 132
Query: 954 LRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
+ L LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 133 -----MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 63/180 (35%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRLYGRVTYNGHNMDE-- 222
+L +S + PG + ++G GKTTLL LAG + DS G ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-----GEISLSGKTIFSKN 72
Query: 223 -FVP--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
+P +R Y+ Q H +TV +A+ + + +R +A
Sbjct: 73 TNLPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEA 121
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
L++ G+ A +SGGQ++R
Sbjct: 122 M-----------------------------LELTGISELA-----GRYPHELSGGQQQRA 147
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
LN +S + PG + ++G +G GKTTL+ LAG + +G ++ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 900 RISGYCEQNDIHS--PQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
R GY Q P +TVY ++ Y + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 958 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
G+ + G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 80/218 (36%)
Query: 816 TFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLM----- 870
D V++ + D+ +L ++ + G A +G++G GK+TL+
Sbjct: 341 DIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 871 --DVLAGRKTTGYVTGNITISGYPKK---------------QETFARISGYCEQNDIHSP 913
DV +G+ I I G+ K Q+ S
Sbjct: 390 FYDVTSGQ---------ILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSD---------- 429
Query: 914 QVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTE--- 970
TV E++L P T EEV+E ++ ++ LP G TE
Sbjct: 430 --TVKENILLG-----RPTA---TD----EEVVEAAKMANAHDFIMNLP--QGYDTEVGE 473
Query: 971 --------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
Q++RL+IA + NP I+ +DE TS LD
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 60/273 (21%), Positives = 101/273 (36%), Gaps = 91/273 (33%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLRLY----GRVTY 215
ILK ++ I G +G GK+TL L+ R Y G++
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP---------RFYDVTSGQILI 400
Query: 216 NGHNMDEF-----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 264
+GHN+ +F V Q D + TV+E +
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQ---------DNILFSDTVKENILLG------------- 438
Query: 265 TELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMIR 323
+P + ++AA + + D+I+ + G DT VG+ R
Sbjct: 439 ------------RPTATDEEVVEAA-----KMANAHDFIMNLPQGY----DTEVGE---R 474
Query: 324 G--ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRG-TTLI 380
G +SGGQ++R++ + + +DE ++ LD + I +L + + TTLI
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTLI 531
Query: 381 -----SLLQPAPEAYDLFDDIILISDGQIVYQG 408
S + A D I++I +G IV G
Sbjct: 532 VAHRLSTITHA-------DKIVVIENGHIVETG 557
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 63/199 (31%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS---LRLYGRVTYNGHNMDE 222
+T ++ +S ++ G +LLGP GKTT L +AG + S + + ++
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV-ADPEKGI 74
Query: 223 FVP----------QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-E 271
FVP Q A Y H MTV + +AF + + V E+ +R
Sbjct: 75 FVPPKDRDIAMVFQSYALY--PH------MTVYDNIAFPLKLRKVPR-----QEIDQRVR 121
Query: 272 KAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRK 331
+ A ++LGL T + + R +SGGQR+
Sbjct: 122 EVA------------------------------ELLGL-----TELLNRKPRELSGGQRQ 146
Query: 332 RVTTGEMLVGPAQAFFMDE 350
RV G +V Q F MDE
Sbjct: 147 RVALGRAIVRKPQVFLMDE 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 65/197 (32%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
T L ++ I+ G LLGP SGK+TLL +AG + G++ ++ ++ E P
Sbjct: 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPP 72
Query: 226 Q-RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-EKAAGIK 277
+ R + Q H MTV + +AF + E+ ++ + A
Sbjct: 73 KDRNVGLVFQNWALYPH------MTVYKNIAFPLELRKAPR-----EEIDKKVREVA--- 118
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI----RGISGGQRKRV 333
K+L +D +++ +SGGQ++RV
Sbjct: 119 ---------------------------KMLHID---------KLLNRYPWQLSGGQQQRV 142
Query: 334 TTGEMLVGPAQAFFMDE 350
LV + +DE
Sbjct: 143 AIARALVKEPEVLLLDE 159
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 65/197 (32%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
+ + GVS ++ G LLGP GKTT LL LAG + G + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 226 -QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-EKAAGIK 277
R + Q H MTV E +AF R + + E+ +R + A
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRISK-----DEVEKRVVEIA--- 118
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI----RGISGGQRKRV 333
+ L +D ++ +SGGQ++RV
Sbjct: 119 ---------------------------RKLLID---------NLLDRKPTQLSGGQQQRV 142
Query: 334 TTGEMLVGPAQAFFMDE 350
LV + DE
Sbjct: 143 ALARALVKQPKVLLFDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 57/193 (29%)
Query: 166 ITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP 225
T + ++ I+ G +LLGP GKTT L +AG + + GR+ + ++ P
Sbjct: 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 80
Query: 226 Q-RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR-EKAAGIK 277
+ R + + Q H MTV E +AF + + E+ +R AA
Sbjct: 81 KDRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPK-----DEIDKRVRWAA--- 126
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
++L + + + +SGGQR+RV
Sbjct: 127 ---------------------------ELLQI-----EELLNRYPAQLSGGQRQRVAVAR 154
Query: 338 MLVGPAQAFFMDE 350
+V MDE
Sbjct: 155 AIVVEPDVLLMDE 167
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 19/126 (15%)
Query: 934 DSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVEL------VANPSI 987
+ K ++ + V L ++ + P + LS +R L +A L S+
Sbjct: 27 EGKYSEVVVRAEENKVRLFVVWEGK-ERP-LTFLSGGERIALGLAFRLAMSLYLAGEISL 84
Query: 988 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047
+ +DEPT LD ++ + + V+ H ++ +A D + I
Sbjct: 85 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV---------I 133
Query: 1048 YVGPLG 1053
+
Sbjct: 134 RISLEN 139
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
L+++S G ++G TGAGKT ++++AG +G + ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEE-VMELVELNLLRQAL 958
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 959 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1000
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 22/149 (14%)
Query: 172 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAY 231
+ ++ G + L+ P +GK+ L L LA ++ L +P Y
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEV---------GELPTGPVIY 73
Query: 232 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAAT 291
+ E R +G+ R+ A G+ P + A
Sbjct: 74 LP------AEDPPTA---IHHRLHALGAHLS---AEERQAVADGLLIQPLIGSLPNIMAP 121
Query: 292 EGQEASVVTDYILKILGLDVCADTMVGDE 320
E + +++ LD + +E
Sbjct: 122 EWFDGLKRAAEGRRLMVLDTLRRFHIEEE 150
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1412 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-23 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-19 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-24 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-20 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-17 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-20 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-20 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-14 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 6e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.001 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 0.003 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (277), Expect = 2e-27
Identities = 55/277 (19%), Positives = 102/277 (36%), Gaps = 52/277 (18%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L+ R + T + ++ I+ G +LLGP GKTT L +AG + + GR+ +
Sbjct: 12 LTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDR 68
Query: 219 NMDEFVPQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
++ P+ R + + Q MTV E +AF + + ++
Sbjct: 69 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD-------EIDKRV---- 117
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
+ ++L ++ + +SGGQR+RV
Sbjct: 118 -----------------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVAR 149
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
+V MDE + LD+ + +++ + T I + EA + D I
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIA 208
Query: 398 LISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+++ GQ++ G V + P VA F+
Sbjct: 209 VMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 98.7 bits (246), Expect = 2e-23
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 21/207 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQ-ETFAR 900
+N ++ + G L+G +G GKTT + ++AG + T G I R
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPKDR 78
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
Q+ P +TVYE++ + ++ + + EL+++ L
Sbjct: 79 NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA 135
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1019
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ T
Sbjct: 136 -----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 1020 VCTIHQPSIDIFEAF---DELFLLKRG 1043
+ H D EA D + ++ RG
Sbjct: 191 IYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (264), Expect = 9e-26
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 8/208 (3%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L+ VS + G +T ++G G+GK+TL++V+ G + G V + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
Q ++TV E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 961 LPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1015
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1016 GRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
G T + H+ + D L+++ G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (260), Expect = 3e-25
Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 35/261 (13%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
+ L GVS + G +TL++GP SGK+TL+ + G L + GRV +
Sbjct: 10 IVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENK 66
Query: 219 NMDEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
++ P Q + EMTV E L C G + + ++
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
M A + IL+ L L D G+ +SGGQ K V
Sbjct: 127 -----------MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVE 160
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394
G L+ + MDE G+ I N + + +G T + + + D
Sbjct: 161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYID 218
Query: 395 DIILISDGQIVYQGPREHVLE 415
+ ++ +GQI+ +G E ++
Sbjct: 219 HLYVMFNGQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (262), Expect = 9e-26
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 834 GVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISG 890
+ ++ + L +V+ + G ++MG +G+GK+T+++++ + T G V NI +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 891 YPKKQETFARIS--GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
+ T R G+ Q P +T E++ + + + R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
EL + P N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1009 VRNTVD-TGRTVVCTIHQPSIDIFEA--FDELFLLKRG 1043
++ + G+TVV H DI A + + LK G
Sbjct: 188 LKKLNEEDGKTVVVVTH----DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 86.0 bits (213), Expect = 3e-19
Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 47/256 (18%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
++ I LK V+ I+ G ++GP SGK+T+L + + G V +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKT 69
Query: 221 DEFVPQRTA-------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKA 273
++ ++ Q I +T E + + G+ ++ RR++A
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKRA 125
Query: 274 AGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRV 333
LK+ L + + +SGGQ++RV
Sbjct: 126 L---------------------------ECLKMAEL----EERFANHKPNQLSGGQQQRV 154
Query: 334 TTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLF 393
L D+ + LDS T +I+ L++ ++ G T++ ++
Sbjct: 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFG 212
Query: 394 DDIILISDGQIVYQGP 409
+ II + DG++ +
Sbjct: 213 ERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 102 bits (256), Expect = 8e-25
Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 17/206 (8%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
+ + G + L+G GAGKTT + +AG R G + N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
+ P++TVYE+L+ A+ R E + + L E + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER---LKQLGG 138
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1021 CTIHQPSIDIFEAF---DELFLLKRG 1043
+ A ++L+ G
Sbjct: 194 LVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 87.3 bits (216), Expect = 2e-19
Identities = 49/258 (18%), Positives = 91/258 (35%), Gaps = 42/258 (16%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-SSLRLYGRVTYNG 217
L I +KG+ + G++ L+G +GKTT L A+AG + ++
Sbjct: 12 LHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71
Query: 218 HNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
+ + + A + + E+TV E L A + + E +
Sbjct: 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWIFSLF 126
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
P L + G +SGG+++ + G
Sbjct: 127 P-----------------------------RLKERLKQLGGT-----LSGGEQQMLAIGR 152
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
L+ + MDE S GL ++ +++ GTT++ + Q A A +
Sbjct: 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGY 210
Query: 398 LISDGQIVYQGPREHVLE 415
++ GQIV +G +L+
Sbjct: 211 VLETGQIVLEGKASELLD 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 101 bits (254), Expect = 2e-24
Identities = 52/256 (20%), Positives = 92/256 (35%), Gaps = 43/256 (16%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMD 221
ILK ++ I G +G GK+TL+ + D + G++ +GHN+
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDGHNIK 83
Query: 222 EFVPQRTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
+F+ I Q D + TV+E + G E+ K A
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF 136
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
I+ L DT VG E +SGGQ++R++ +
Sbjct: 137 --------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIF 169
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
+ +DE ++ LD + I +L + + T + ++ D I++I
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVI 225
Query: 400 SDGQIVYQGPREHVLE 415
+G IV G ++
Sbjct: 226 ENGHIVETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.4 bits (240), Expect = 2e-22
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 21/238 (8%)
Query: 808 LPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKT 867
+ + + D V++ + D+ +L ++ + G A +G++G GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 868 TLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCE--QNDIHSPQVTVYESLLYSA 925
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 926 WLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANP 985
EV + + + + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGY--DTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 986 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.2 bits (247), Expect = 2e-23
Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 42/256 (16%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
+ + +L+G++ +RPG +T L+GP SGK+T+ L + G++ +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 223 FVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPD 279
+ + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 280 PDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEML 339
P ++ AA G I GL DT V + + +SGGQR+ V L
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399
+ +D+ ++ LD+++ Q+ L + + L+ + D I+ +
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 400 SDGQIVYQGPREHVLE 415
G I G + ++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (220), Expect = 5e-20
Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 22/244 (9%)
Query: 805 GMVLPFEPH-SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTG 863
G++ P + F DV+++ ++ VL ++ RPG +TAL+G G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVL---VLQG-------LTFTLRPGEVTALVGPNG 50
Query: 864 AGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQETFARISGYCEQNDIHSPQVTVYES 920
+GK+T+ +L + + G P + R Q + ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQ--LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQEN 107
Query: 921 LLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVE 980
+ Y + + E + + L V G LS QR+ + +A
Sbjct: 108 IAYGLTQKPTMEEITAAAVK-SGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARA 165
Query: 981 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1039
L+ P ++ +D+ TS LDA + V + + + + R+V+ S + E D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILF 223
Query: 1040 LKRG 1043
L+ G
Sbjct: 224 LEGG 227
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.6 bits (248), Expect = 2e-23
Identities = 44/257 (17%), Positives = 92/257 (35%), Gaps = 34/257 (13%)
Query: 787 SSSQSLETITEANQPKRRGMVLPFEPHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSV 846
+ + E Q + ++++F + VL ++
Sbjct: 11 FWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCL--------------VGNPVL-KNI 55
Query: 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCE 906
+ G + A+ G TG+GKT+L+ ++ G G I SG R+ +C
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV-SFCS 103
Query: 907 QNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966
Q P T+ E++++ E K+ + ++ + ++G G
Sbjct: 104 QFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-EGGVT 158
Query: 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1026
LS QR R+++A + + + +D P LD V + + +T + +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 218
Query: 1027 SIDIFEAFDELFLLKRG 1043
D++ +L +G
Sbjct: 219 E--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.2 bits (234), Expect = 2e-21
Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 52/248 (20%)
Query: 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR 227
+LK ++ I G M + G SGKT+LL+ + G+L++S G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--VSFCSQ- 104
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
I +T++G E +SGGQR R++ + A +
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQ 407
+D LD T Q+ S ++ T I L+ E D I+++ G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 408 GPREHVLE 415
G +
Sbjct: 239 GTFSELQS 246
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.9 bits (241), Expect = 3e-23
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG-RKTTGYVTGNITISGYPKKQETFARI 901
L ++ G + G G GKTTL+ ++ K I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG---EIIYNGVPITK--VKGK 71
Query: 902 SGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
+ + I +++V + L A L K K I + +E VE+ L++
Sbjct: 72 IFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK---- 122
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1020
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 --LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 180
Query: 1021 CTIHQPSI 1028
+ + S
Sbjct: 181 SSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 78.4 bits (193), Expect = 7e-17
Identities = 35/215 (16%), Positives = 76/215 (35%), Gaps = 48/215 (22%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
+L+ ++ I G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 227 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
++ + + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 287 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAF 346
L+ + + + +S G +RV L+ A+ +
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 347 FMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLIS 381
+D+ +D + +++ S+ + I +G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.8 bits (241), Expect = 1e-22
Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 22/232 (9%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
L F +VT++ + L +++ G AL+G +G+GK+T+ ++
Sbjct: 14 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 875 GRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
G+I + G+ ++ + QN
Sbjct: 63 R--FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
+++ R + + + ++ L ++G GV LS QR+R+ IA L+ + I+ +D
Sbjct: 121 QIEEAARMAYAMDFINKMDNGL--DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILD 177
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
E TS LD + + + + RT + H+ S E DE+ +++ G
Sbjct: 178 EATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.1 bits (226), Expect = 1e-20
Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 42/255 (16%)
Query: 163 KKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE 222
+ + L+ ++ I G+ L+G SGK+T+ + D G + +GH++ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 223 FVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDP 280
+ R + +VH+ TV +A+ + ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAY------ARTEEYSREQIEEAARMAYAMDF- 134
Query: 281 DLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLV 340
I +D DT++G E +SGGQR+R+ L+
Sbjct: 135 -------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALL 168
Query: 341 GPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILIS 400
+ +DE ++ LD+ + I +L + + + T + ++ + D+I+++
Sbjct: 169 RDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVE 224
Query: 401 DGQIVYQGPREHVLE 415
DG IV +G +L
Sbjct: 225 DGIIVERGTHSELLA 239
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 47/261 (18%), Positives = 89/261 (34%), Gaps = 49/261 (18%)
Query: 161 SRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNM 220
+ I L VS + G++ ++G +GK+TL+ + + G V +G +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL 69
Query: 221 DEFVPQRTA------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274
I QH + TV +A + +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV- 121
Query: 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVT 334
+L ++GL D+ + +SGGQ++RV
Sbjct: 122 --------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRVA 150
Query: 335 TGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFD 394
L + DE ++ LD +TT I+ L + I+ G T++ + + D
Sbjct: 151 IARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICD 209
Query: 395 DIILISDGQIVYQGPREHVLE 415
+ +IS+G+++ Q V
Sbjct: 210 CVAVISNGELIEQDTVSEVFS 230
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.0 bits (231), Expect = 1e-21
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
LN+VS G + ++G +GAGK+TL+ + R T G V ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 900 RIS-GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R G Q+ TV+ ++ L +P+ + K R + E++ LV L +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1017
LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 PS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRG 1043
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 4e-22
Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 27/218 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
L VS R G + +++G +G+GK+T + + + + G + I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 900 RIS-----------GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMEL 948
Q+ +TV E+++ + + + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKYLAK 135
Query: 949 VELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1008
V + +A P LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 V--GIDERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1009 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
++ + G+T+V H ++ A + L +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 89.9 bits (223), Expect = 3e-20
Identities = 61/300 (20%), Positives = 105/300 (35%), Gaps = 68/300 (22%)
Query: 154 NSLNI--LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYG 211
N L++ L R +LKGVS R G + ++G SGK+T L + S G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 212 RVTYNGHNMDEFVPQ----------------RTAAYISQHDVHIGEMTVRETLAFSARCQ 255
+ NG N++ + + QH MTV E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 115
Query: 256 GVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADT 315
+ L++ RE+A L +G+D A
Sbjct: 116 ----QVLGLSKHDARERA---------------------------LKYLAKVGIDERAQ- 143
Query: 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILR 375
+ +SGGQ++RV+ L DE ++ LD +++ ++Q
Sbjct: 144 ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--E 198
Query: 376 GTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQ 435
G T++ + A + +I + G+I +G E V F P+ + FL+
Sbjct: 199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.3 bits (234), Expect = 5e-22
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 13/203 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQETFAR 900
L +S G + L+G GAGKTT + +++ + ++G VT + ++ +
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPHEVRK 75
Query: 901 ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVG 960
+ Y + + E L + A S + +E E+ L + V
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS 132
Query: 961 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1020
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 133 -----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 1021 CTIHQPSIDIFEAFDELFLLKRG 1043
+ H ++ D + L+ G
Sbjct: 188 VSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.4 bits (224), Expect = 1e-20
Identities = 61/282 (21%), Positives = 97/282 (34%), Gaps = 54/282 (19%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
L R ILKG+S I G + L+GP +GKTT L ++ + S G VT G
Sbjct: 8 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGK 64
Query: 219 NMDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGI 276
N+ E + + +Y+ + M E L F A S E
Sbjct: 65 NVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-------EIEEMV--- 114
Query: 277 KPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTG 336
+ +I GL V S G +++
Sbjct: 115 ------------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIA 145
Query: 337 EMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396
L+ + +DE ++GLD ++ L+Q G T++ E L D I
Sbjct: 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRI 203
Query: 397 ILISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFLQEVT 438
LI +G IV G E + + + + + + +EV
Sbjct: 204 ALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP---KKQETFA 899
L +SG R G + L+G GAGK+TL+ +AG + G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 900 RISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALV 959
Y Q V+ L KTR + +V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDDKLGRST 123
Query: 960 GLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1012
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1013 VDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
G +V + H + +LLK G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (212), Expect = 4e-19
Identities = 46/257 (17%), Positives = 77/257 (29%), Gaps = 56/257 (21%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSAT 68
Query: 227 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLD 283
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 284 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPA 343
+ + + + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 344 QAFFMDEISTGLDSSTTFQIVNSLRQFIHILR-----GTTLISLLQPAPEAYDLFDDIIL 398
LD V IL G ++ L
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWL 204
Query: 399 ISDGQIVYQGPREHVLE 415
+ G+++ G RE VL
Sbjct: 205 LKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 6e-21
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 23/231 (9%)
Query: 816 TFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875
TF ++ + D V+L++++ + + G + ++G +G+GK+TL ++
Sbjct: 3 TFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 876 RKTTGYVTGNITISGYP---KKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPE 932
+ I G+ R G Q D ++ +++ + +
Sbjct: 52 FYIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEK 108
Query: 933 VDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992
V + + + + +VG G LS QR+R+ IA LV NP I+ DE
Sbjct: 109 VIYAAKLAGAHDFISELREGY--NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDE 165
Query: 993 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
TS LD + ++MR + + GRTV+ H+ S + D + ++++G
Sbjct: 166 ATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 87.7 bits (217), Expect = 1e-19
Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 45/257 (17%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMD 221
+ IL ++ I+ G + ++G SGK+TL + +V +GH++
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLA 68
Query: 222 EFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
P R + Q D + ++ + ++ + + ++ K AG
Sbjct: 69 LADPNWLRRQVGVVLQ-DNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGA-- 118
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+ + E G+SGGQR+R+
Sbjct: 119 -------------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
LV + DE ++ LD + I+ ++ + I +G T+I + D II+
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIV 209
Query: 399 ISDGQIVYQGPREHVLE 415
+ G+IV QG + +L
Sbjct: 210 MEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 4e-20
Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 52/277 (18%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
++ + + K ++ I G + +GP GK+TLL +AG + G +
Sbjct: 6 VTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEK 62
Query: 219 NMDEFVPQRTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIK 277
M++ P + Q ++V E ++F + G ++
Sbjct: 63 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---- 111
Query: 278 PDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGE 337
+ + ++L L D +SGGQR+RV G
Sbjct: 112 -----------------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGR 143
Query: 338 MLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397
LV F +DE + LD++ Q+ +H G T+I + EA L D I+
Sbjct: 144 TLVAEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIV 202
Query: 398 LISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
++ G++ G + + P + VA F+
Sbjct: 203 VLDAGRVAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.1 bits (205), Expect = 4e-18
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 19/206 (9%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARIS 902
++ G +G +G GK+TL+ ++AG +T + I A
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPAERG 73
Query: 903 -GYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGL 961
G Q+ P ++V E++ + L + + R + +V E+++L L
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRKPK- 129
Query: 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1020
LS QR+R+ I LVA PS+ +DEP S LDA + + GRT++
Sbjct: 130 ----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 1021 CTIHQPSIDIFEAF---DELFLLKRG 1043
H D EA D++ +L G
Sbjct: 186 YVTH----DQVEAMTLADKIVVLDAG 207
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.5 bits (214), Expect = 3e-19
Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ 226
IL+ +S +P + GP GK+T+ L + G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 227 RTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDV 284
+ I D I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 285 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQ 344
+T VG E ISGGQR+R+ + +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 345 AFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404
+DE + LDS + + +L +++G T + + D I I GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 405 VYQGPREHVLE 415
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 82.2 bits (203), Expect = 9e-18
Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 23/232 (9%)
Query: 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874
L+ V ++ D D +L +S +P + A G +G GK+T+ +L
Sbjct: 2 LSARHVDFAYD-----------DSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Query: 875 G--RKTTGYVT-GNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSP 931
+ T G +T I + + G+ Q+
Sbjct: 50 RFYQPTAGEITIDGQPIDNISLEN--WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE 107
Query: 932 EVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 991
++ F +E + VG GV +S QR+RL IA + NP I+ +D
Sbjct: 108 DLWQVLDLAFARSFVENMPD--QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLD 164
Query: 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043
E T+ LD+ + ++V + + + + GRT + H+ S D+++ +++G
Sbjct: 165 EATASLDSESESMVQKALDS-LMKGRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.4 bits (208), Expect = 2e-18
Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 51/276 (18%)
Query: 162 RKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS---LRLYGRVTYNGH 218
+K + L V+ I G +LGP +GKTT + +AG S L R+ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 219 NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+ R + Q +T E +AF + R++
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKRV----- 121
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+ + KIL + + R +SG Q++RV
Sbjct: 122 ----------------------EEVAKILDIHHVLNHF-----PRELSGAQQQRVALARA 154
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
LV +DE + LD+ +++ L T L+ PA + + + D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
+ G++V G E + + P VA +
Sbjct: 214 LVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.8 bits (191), Expect = 3e-16
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 14/206 (6%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVTGNITISGYPKKQET--F 898
L++V+ G ++G +GAGKTT M ++AG +TG + + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
R G Q P +T +E++ + ++ + + +EEV ++++++ +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN-- 135
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1017
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ G
Sbjct: 136 ---HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRG 1043
T++ H P+ DIF D + +L +G
Sbjct: 193 TLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.8 bits (204), Expect = 4e-18
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 55/267 (20%)
Query: 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQR- 227
L +S + G ++LGP +GKT L +AG GR+ +G ++ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 228 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMK 287
A++ Q+ M V++ L F R + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRV-------------- 108
Query: 288 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFF 347
+ L ++ D +SGG+++RV LV +
Sbjct: 109 -------------LDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 348 MDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQ 407
+DE + LD T + + +H T++ + EA + D I ++ DG+++
Sbjct: 151 LDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 408 GPREHVLEFFEFMGFKCPERKGVADFL 434
G E + F+ P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 70.1 bits (171), Expect = 9e-14
Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 22/206 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG----RKTTGYVTGNITISGYPKKQETF 898
L+++S G ++G TGAGKT ++++AG + G P+K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 899 ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQAL 958
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLL 121
Query: 959 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1017
P LS +++R+ +A LV NP I+ +DEP S LD R +
Sbjct: 122 DRNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1018 TVVCTIHQPSIDIFEAFDELFLLKRG 1043
TV+ H + + D + ++ G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVVMDG 204
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.7 bits (204), Expect = 6e-18
Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 44/276 (15%)
Query: 159 LSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGH 218
+ +T ++ +S ++ G +LLGP GKTT L +AG + S G++
Sbjct: 9 VWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDK 65
Query: 219 NMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKP 278
+ + + + + + + ++
Sbjct: 66 LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV----- 120
Query: 279 DPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338
+ ++LGL + + +SGGQR+RV G
Sbjct: 121 ----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRA 153
Query: 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398
+V Q F MDE + LD+ ++ L++ L TT+ EA + D I +
Sbjct: 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAV 212
Query: 399 ISDGQIVYQGPREHVLEFFEFMGFKCPERKGVADFL 434
++ G + G + V + P VA F+
Sbjct: 213 MNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.3 bits (190), Expect = 4e-16
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 21/210 (10%)
Query: 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFA 899
+ +S + G L+G +G GKTT + ++AG + G + G+ ++ K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 900 RISG--YCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQA 957
+ Q+ P +TVY+++ + LR P + R + EV EL+ L L
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNR 135
Query: 958 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1016
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 KPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1017 RTVVCTIHQPSIDIFEAF---DELFLLKRG 1043
T + H D EA D + ++ RG
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 4e-13
Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 55/258 (21%)
Query: 178 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTA-AYISQHD 236
+LLGP +GK+ L +AG + G V NG ++ P+R ++ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEA 296
++V +A+ R R + E+
Sbjct: 80 ALFPHLSVYRNIAYGLRNVERVERDRRVREM----------------------------- 110
Query: 297 SVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLD 356
+ + D +SGG+R+RV LV + +DE + +D
Sbjct: 111 ------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 357 SSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLEF 416
T ++ LR L EA L D++ ++ +G+IV +G + +
Sbjct: 159 LKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS- 216
Query: 417 FEFMGFKCPERKGVADFL 434
+ VA+FL
Sbjct: 217 --------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.5 bits (154), Expect = 2e-11
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 852 PGVLTALMGVTGAGKTTLMDVLAG--RKTTGYVT-GNITISGYPKKQETFARISGYCEQN 908
L+G TGAGK+ ++++AG + G V I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 909 DIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLS 968
P ++VY ++ Y V+ R + E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 969 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1027
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1028 IDIFEAFDELFLLKRG 1043
+ DE+ ++ G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.4 bits (101), Expect = 5e-05
Identities = 28/198 (14%), Positives = 43/198 (21%), Gaps = 36/198 (18%)
Query: 857 ALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVT 916
+ G G GKTTL+ + R G R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVER--LGKRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 917 VYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLT 976
+ + S + V S + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 977 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1036
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1037 LFLLKRGGQEIYVGPLGR 1054
+ L G I + P R
Sbjct: 149 IRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 0.001
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 5/105 (4%)
Query: 183 LLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ--RTAAYISQHDVHIG 240
++ G P GKTTL+ + +L E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA---IGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVF 285
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.4 bits (98), Expect = 4e-04
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 923 YSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELV 982
+A L + E + + L + G V L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 983 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1038
+DE + LD + +R + + + +FE D L
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 11/144 (7%)
Query: 153 LNSLNILSSRKKHITILKGVSGI-------IRPGRMTLLLGPPASGKTTLLLALAGKLDS 205
+ + + R + I + G + + G +T L G +GK+ L LA
Sbjct: 1 VTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI 60
Query: 206 SL---RLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYE 262
L G+ Y F P R + + + + A + +
Sbjct: 61 PLDIGGGEGKCLYIDTEGT-FRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLD 119
Query: 263 MLTELARREKAAGIKPDPDLDVFM 286
++ + + I D + ++
Sbjct: 120 AAAQMMSESRFSLIVVDSVMALYR 143
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 2/116 (1%)
Query: 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDE--FVPQRTAA 230
G I G +T + G +GKT + LA + G + E F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 231 YISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFM 286
++ + ++ A + + + + A + D ++
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 132
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.3 bits (90), Expect = 0.002
Identities = 22/177 (12%), Positives = 39/177 (22%), Gaps = 16/177 (9%)
Query: 154 NSLNILSSRKKHITILKGVSGI-------IRPGRMTLLLGPPASGKTTLLLALAGKLDSS 206
+ +++L R + S + + +T G SGKT ++ L
Sbjct: 2 SGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL--- 58
Query: 207 LRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTE 266
V Q A YI E T R +L
Sbjct: 59 QNPEFLFYDEEAVSKGEVAQPKAVYID------TEGTFRPERIMQMAEHAGIDGQTVLDN 112
Query: 267 LARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323
+ VV D + + + + +
Sbjct: 113 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQK 169
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 0.002
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 156 LNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTY 215
+NIL + L V + G + L+ P +GK+ L L LA ++ L
Sbjct: 6 INILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGEL 65
Query: 216 NGHN 219
Sbjct: 66 PTGP 69
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 38.7 bits (90), Expect = 0.003
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 655 FRLIAATGRNLVVANTFGAFALLLLYALGGFVLN-------REDIKSWWIWAYWCSPLMY 707
R++AAT RN+ G F L Y LG + +EDI Y
Sbjct: 136 VRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKY 195
Query: 708 AQNAIMVNE-----FLGHSW 722
A+ + L + W
Sbjct: 196 AKEVEGFTKSAQELLLSYPW 215
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.004
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 3/137 (2%)
Query: 186 GPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVR 245
+GKTTLL L L R H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILK 305
+ A E+ + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 306 ILGLDVCADTMVGDEMI 322
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1412 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.79 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.22 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.19 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.07 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.96 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.84 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.37 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.94 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.68 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.51 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.5 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.39 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.11 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.99 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.97 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.8 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.68 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.57 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.55 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.44 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.37 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.34 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.3 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.27 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.23 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.21 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.11 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.09 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.09 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.03 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.02 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.01 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.95 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.94 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.89 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.86 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.84 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.82 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.76 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.72 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.7 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.69 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.66 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.59 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.58 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.55 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.53 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.52 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.44 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.41 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.38 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.38 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.36 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.36 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.34 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.33 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.33 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.24 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.23 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.22 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.16 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.15 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.14 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.14 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.13 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.12 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.12 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.12 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.1 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.1 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.08 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.08 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.08 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.06 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.05 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.97 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.97 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.96 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.91 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.87 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.86 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.86 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.86 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.84 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.84 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.8 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.77 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.77 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.76 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.72 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.68 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.65 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.65 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.64 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.63 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.62 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.61 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.6 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.54 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.54 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.52 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.5 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.42 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.4 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.39 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.38 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.37 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.34 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.34 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.34 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.32 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.28 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.28 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.27 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.12 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.08 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.08 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.07 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.05 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.02 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.96 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.84 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.77 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.67 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.66 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.61 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.5 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.46 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.34 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.29 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.28 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.27 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.25 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.17 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.13 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.12 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.11 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.07 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.07 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.06 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.99 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.91 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.89 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.88 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.87 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.87 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.85 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.83 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.83 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.8 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.78 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.71 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.7 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.63 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.53 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.53 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.53 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.49 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.46 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.46 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.45 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.45 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.42 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.34 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.31 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.22 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.21 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.2 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.19 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.16 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.12 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.12 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.04 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.03 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.01 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.89 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.87 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.79 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.78 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.6 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.59 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.59 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.55 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.5 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.47 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.43 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.4 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.39 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.37 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.33 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.31 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.31 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.3 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.23 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.2 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.19 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.18 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.18 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.13 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.11 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.08 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.08 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.96 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.96 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.92 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.91 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.83 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.67 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.6 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.53 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.51 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.43 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.39 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.35 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.27 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.25 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.24 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.21 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.2 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.17 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.11 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.07 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.04 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.03 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.97 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.94 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.9 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.89 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.81 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.77 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.75 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.68 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.68 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.66 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.66 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.61 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.5 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.46 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.39 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.38 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.36 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.36 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.31 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 89.3 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.25 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.24 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.23 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.17 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.08 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.01 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.9 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.89 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.81 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.68 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.67 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.63 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.59 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.56 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.49 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.47 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.42 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.29 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.19 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.15 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.12 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.08 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.08 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.05 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.02 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.94 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.85 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.84 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.75 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.73 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.68 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.67 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.66 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.64 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.58 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.55 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.42 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.38 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.33 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.33 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.28 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.22 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.2 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.19 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.16 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.05 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.87 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.67 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.65 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.63 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.61 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.6 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.49 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.37 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.35 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.29 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.21 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.2 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.03 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.0 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.99 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.76 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.53 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.47 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.26 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.81 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.75 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.7 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.38 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.36 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.91 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.6 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.47 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 83.42 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.34 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.91 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.82 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 82.82 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.37 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.91 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.77 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.72 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.7 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.64 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.16 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.1 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=332.31 Aligned_cols=209 Identities=24% Similarity=0.385 Sum_probs=178.5
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCC
Q ss_conf 553153030567828839999859999789999998459799997000999988237876754-1089976788768999
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEM 242 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~l 242 (1412)
+...+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+..+. +.++||+|++.+++.+
T Consensus 11 g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~ 87 (232)
T d2awna2 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87 (232)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC----
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCH
T ss_conf 9999981117788699899999899982999999996587888---8889999997788864443222343342026433
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999997644027873245758978999872999999958999999751134569999999992998655533357555
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~ 322 (1412)
||+||+.|+.++++.. + .+....++.+++.+||++.+|..+.
T Consensus 88 tv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~l~~~~~~~~~---- 129 (232)
T d2awna2 88 SVAENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLDRKPK---- 129 (232)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHHCCHH----
T ss_conf 3788978999875998----------8------------------------9999999999975788656648965----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECC
Q ss_conf 55783235579999997289837698479889998999999999999998529859999845923698425849998199
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G 402 (1412)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+..+ ++++.++|...++..++|+|++|.+|
T Consensus 130 -~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G 207 (232)
T d2awna2 130 -ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAG 207 (232)
T ss_dssp -----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred -HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf -6999999999999997039988997588878898899899999999987429-87999948999999969999999799
Q ss_pred EEEEECCHHHHHH
Q ss_conf 3999549444999
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~ivy~G~~~~~~~ 415 (1412)
+++.+|+++++++
T Consensus 208 ~iv~~G~~~el~~ 220 (232)
T d2awna2 208 RVAQVGKPLELYH 220 (232)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEECHHHHHH
T ss_conf 9999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=328.93 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=177.7
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCC
Q ss_conf 53153030567828839999859999789999998459799997000999988237876754-10899767887689999
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lT 243 (1412)
...+|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++||+|+..+++.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCH
T ss_conf 999981306788799899999999982999999997589998---78799916413547700015899800335342220
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999976440278732457589789998729999999589999997511345699999999929986555333575555
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 VrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~r 323 (1412)
|+||+.|+++.++.. +. +....++.+|+.+||++.+|..+.
T Consensus 95 v~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 135 (239)
T d1v43a3 95 VYENIAFPLKIKKFP----------KD------------------------EIDKRVRWAAELLQIEELLNRYPA----- 135 (239)
T ss_dssp HHHHHHTTCC--CCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCTT-----
T ss_pred HHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 999999999873999----------99------------------------999999999987598556609954-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCE
Q ss_conf 57832355799999972898376984798899989999999999999985298599998459236984258499981993
Q 000576 324 GISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQ 403 (1412)
Q Consensus 324 gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ 403 (1412)
.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.++++.+..+.| ++.++|...++..++|+|++|.+|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 699999889999766404998243068866689899989999999998731980-7999489999998699999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999549444999
Q 000576 404 IVYQGPREHVLE 415 (1412)
Q Consensus 404 ivy~G~~~~~~~ 415 (1412)
++.+|+++++.+
T Consensus 215 iv~~G~~~el~~ 226 (239)
T d1v43a3 215 LLQIGSPTEVYL 226 (239)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-45 Score=324.96 Aligned_cols=207 Identities=28% Similarity=0.390 Sum_probs=136.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-------CCEEEEECCCCC
Q ss_conf 5315303056782883999985999978999999845979999700099998823787675-------410899767887
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP-------QRTAAYISQHDV 237 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 237 (1412)
...+|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHH
T ss_conf 999985606688699899999999980999999996487889---89899999980356644424532255120022122
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68999999999976440278732457589789998729999999589999997511345699999999929986555333
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~V 317 (1412)
+++.+||+||+.|+.+..+.. +. +....++++++.+||++.+|..+
T Consensus 92 L~~~ltV~eni~~~~~~~~~~----------~~------------------------e~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRKVP----------RQ------------------------EIDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCG
T ss_pred HCCHHHHHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHCCCH
T ss_conf 231011667633068772999----------89------------------------99999999998759966762993
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 57555557832355799999972898376984798899989999999999999985298599998459236984258499
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 G~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~Ii 397 (1412)
+ .|||||||||+||++|+.+|+++++||||+|||+.++.+|.+.++++.+..+ ++++.++|..+++..++|+|+
T Consensus 138 ~-----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~ 211 (240)
T d1g2912 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIA 211 (240)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEE
T ss_pred H-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEE
T ss_conf 3-----4999999999999998269988982588765698999899999999986369-889999599999999699999
Q ss_pred EEECCEEEEECCHHHHH
Q ss_conf 98199399954944499
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 lL~~G~ivy~G~~~~~~ 414 (1412)
+|.+|++++.|++++++
T Consensus 212 vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99899999985999998
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=324.76 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=150.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC-----C-CCEEEEECCCCCC
Q ss_conf 531530305678288399998599997899999984597999970009999882378767-----5-4108997678876
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFV-----P-QRTAAYISQHDVH 238 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~-~~~~~yv~Q~d~~ 238 (1412)
...+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... . ++.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999764402787324575897899987299999995899999975113456999999999299865553335
Q 000576 239 IGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 318 (1412)
Q Consensus 239 ~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG 318 (1412)
+|++||+||+.|+.+..+... .+....++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 666657777665567613799----------------------------------9999999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 75555578323557999999728983769847988999899999999999999852985999984592369842584999
Q 000576 319 DEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIIL 398 (1412)
Q Consensus 319 ~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~Iil 398 (1412)
.|||||||||+|||+|+.+|+++++||||+|||+.++.++.+.++++.+..+ ++++.++|...++.+++|+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g-~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHCCEEEE
T ss_conf -----5999998589987577604661454478667998998899899999986359-8799997999999996999999
Q ss_pred EECCEEEEECCHHHHHH
Q ss_conf 81993999549444999
Q 000576 399 ISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 399 L~~G~ivy~G~~~~~~~ 415 (1412)
|.+|+++..|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999869999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-45 Score=323.20 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=175.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 153030567828839999859999789999998459799997000999988237876754-1089976788768999999
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEMTVR 245 (1412)
Q Consensus 167 ~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVr 245 (1412)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+. +.++||+|+..+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99997644027873245758978999872999999958999999751134569999999992998655533357555557
Q 000576 246 ETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGI 325 (1412)
Q Consensus 246 Etl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgL 325 (1412)
||+.|+.+.++... ...++.+++.+||.+-.|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HC
T ss_conf 88888776405538-------------------------------------9999999998256555758955-----47
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEE
Q ss_conf 83235579999997289837698479889998999999999999998529859999845923698425849998199399
Q 000576 326 SGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIV 405 (1412)
Q Consensus 326 SGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~iv 405 (1412)
||||||||+|||+|+.+|++++|||||+|||+.+..++.+.++++.+.. +++++.++|...++..++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 9998401403043443677144347876799899999999999998647-968999749999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 9549444999
Q 000576 406 YQGPREHVLE 415 (1412)
Q Consensus 406 y~G~~~~~~~ 415 (1412)
++|+++++.+
T Consensus 208 ~~g~~~el~~ 217 (229)
T d3d31a2 208 QVGKPEEIFE 217 (229)
T ss_dssp EEECHHHHHS
T ss_pred EECCHHHHHH
T ss_conf 9869999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-45 Score=321.50 Aligned_cols=200 Identities=23% Similarity=0.293 Sum_probs=98.7
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---C---CCCCEEEEECCCCCCCCC
Q ss_conf 5400307777188099997679998446996461997787078999996930781---0---112157786158888999
Q 000576 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---E---TFARISGYCEQNDIHSPQ 914 (1412)
Q Consensus 841 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~---~---~~~~~~~yv~Q~d~~~~~ 914 (1412)
.+|+|||+.+++||.++|+|+||||||||+++|+|... +.+|+|.++|.+... . .+++.+|||+|+..++|.
T Consensus 19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98615057886997999989998988899998758863--6677328867685208755511554166430225222799
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 89999999998720799999889999999999992992010100279988777988887899999996099689995999
Q 000576 915 VTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 994 (1412)
Q Consensus 915 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPT 994 (1412)
+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|++||||
T Consensus 97 ~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEPt 168 (240)
T d3dhwc1 97 RTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (240)
T ss_dssp SBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred CCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 649999999999849---998999999999999769903554894-----349999998999864010589868744655
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999999999999999857-9989999558858999864517688159499998599
Q 000576 995 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 995 sgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
+|||+.++..|++.++++.+. |.|||+++|+.. ++...+|++++|.+ |+++..|++
T Consensus 169 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 225 (240)
T d3dhwc1 169 SALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTV 225 (240)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 6589888567999999998646978999838999-99986999999979-999998799
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-45 Score=318.71 Aligned_cols=223 Identities=23% Similarity=0.379 Sum_probs=179.6
Q ss_pred EEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69993016999982588777880466799999888652101256655315303056782883999985999978999999
Q 000576 119 EVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLA 198 (1412)
Q Consensus 119 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~ 198 (1412)
+|+|+|+++.++ .....+|+|+|+.+++|+.++|+||+|||||||+++
T Consensus 1 eI~~~nvsf~Y~--------------------------------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~l 48 (241)
T d2pmka1 1 DITFRNIRFRYK--------------------------------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48 (241)
T ss_dssp EEEEEEEEEESS--------------------------------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEEC--------------------------------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 929999999908--------------------------------999603742489984999999999999989999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 845979999700099998823787675---41089976788768999999999976440278732457589789998729
Q 000576 199 LAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAG 275 (1412)
Q Consensus 199 LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~ 275 (1412)
|+|.++|+ +|+|.+||.++.+... ++.++||+|+ .++++.||+||+.|+....
T Consensus 49 l~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~-~~lf~~Ti~eNi~~~~~~~-------------------- 104 (241)
T d2pmka1 49 IQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQD-NVLLNRSIIDNISLANPGM-------------------- 104 (241)
T ss_dssp HTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSS-CCCTTSBHHHHHCTTSTTC--------------------
T ss_pred HHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECC-CCCCCCCCCCCCCCCCCCC--------------------
T ss_conf 97357888---88999999994400246553528898244-6557840003522357554--------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999958999999751134569999999992998655533357555557832355799999972898376984798899
Q 000576 276 IKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGL 355 (1412)
Q Consensus 276 i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgL 355 (1412)
+.+...+++...+. .+ .+..++...||.+|+.+. .|||||||||+|||+++.+|++++||||||+|
T Consensus 105 -----~~~~~~~~~~~~~~-----~~---~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalARal~~~p~ililDEpts~L 170 (241)
T d2pmka1 105 -----SVEKVIYAAKLAGA-----HD---FISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170 (241)
T ss_dssp -----CHHHHHHHHHHHTC-----HH---HHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred -----CHHHHHHHHHHHHH-----HH---HHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf -----38889999999755-----78---887632013443278788-66988989875443444165135564776555
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 989999999999999985298599998459236984258499981993999549444999
Q 000576 356 DSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 356 Ds~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~ 415 (1412)
|+.++.+|++.|+++.+ +.|+| .++|... ....+|+|++|++|+++++|++++++.
T Consensus 171 D~~~~~~i~~~l~~l~~--~~Tvi-~itH~l~-~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 171 DYESEHVIMRNMHKICK--GRTVI-IIAHRLS-TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CHHHHHHHHHHHHHHHT--TSEEE-EECSSGG-GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHC--CCEEE-EEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98999999999999858--99899-9978899-998499999998999999889999982
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-44 Score=317.48 Aligned_cols=214 Identities=25% Similarity=0.332 Sum_probs=189.8
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.+.++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
Q ss_conf 810-------1121577861588889998999999999872079999988999999999999299201010027998877
Q 000576 894 KQE-------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNG 966 (1412)
Q Consensus 894 ~~~-------~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~g 966 (1412)
... ..++.+|||+|++.+.|.+||+|++.|...++ ..+.++.+++++++++.+++.+.++..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7988887899999996099689995999999999999999999999857-998999955885899986451768815949
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~ 1045 (1412)
||||||||++||++|+.+|++|++||||+|||+.+...+++.++++.+. |.|||+++|+.. ++.+..|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-9999699999998-999
Q ss_pred EEEECCC
Q ss_conf 9998599
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~vy~G~~ 1052 (1412)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-45 Score=320.94 Aligned_cols=214 Identities=22% Similarity=0.348 Sum_probs=190.7
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.++++|++.+++ ...+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 81-01121577861588889998999999999872079999988999999999999299201010027998877798888
Q 000576 894 KQ-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQR 972 (1412)
Q Consensus 894 ~~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqr 972 (1412)
.. ...+|.+|||+|+..++|.+||+|++.|.+.++ ..+.++.+++++++++.++|.+.++..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 7899999996099689995999999999999999999999857-998999955885899986451768815949999859
Q 000576 973 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 973 kRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~ 1051 (1412)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.+. |.|||+++|++. ++.+..|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000576 1052 L 1052 (1412)
Q Consensus 1052 ~ 1052 (1412)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=322.77 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=187.9
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951012231440123115457750540030777718809999767999844699646199778707899999693078
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~ 894 (1412)
++++|++++++ ...+|+|||+.+++||.++|+||||||||||+++++|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 1-011215778615888899989999999998720799999889999999999992992010100279988777988887
Q 000576 895 Q-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 973 (1412)
. ...+|.+|||+|+..++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 89999999609968999599999999999999999999985-79989999558858999864517688159499998599
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+..|++++|. +|+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-9999699999997-9999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.1e-44 Score=314.40 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=176.5
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951012231440123115457750540030777718809999767999844699646199778707899999693078
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~ 894 (1412)
++++|+++++... .....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CCC------C-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCH-HHHCCCCCCCCCC
Q ss_conf 101------1-2157786158888999899999999987207999998899999999999929920-1010027998877
Q 000576 895 QET------F-ARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNL-LRQALVGLPGVNG 966 (1412)
Q Consensus 895 ~~~------~-~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~g 966 (1412)
... + ++.+|||+|+..+.|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7988887899999996099689995999999999999999999999857-998999955885899986451768815949
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~ 1045 (1412)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|||+++|++. ..+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9998599
Q 000576 1046 EIYVGPL 1052 (1412)
Q Consensus 1046 ~vy~G~~ 1052 (1412)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-45 Score=319.06 Aligned_cols=228 Identities=23% Similarity=0.367 Sum_probs=181.0
Q ss_pred EEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 16999301699998258877788046679999988865210125665531530305678288399998599997899999
Q 000576 118 IEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKTTLLL 197 (1412)
Q Consensus 118 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~ 197 (1412)
..|+|+|+++.+. .++...+|+|+|+.+++|+.++|+||||||||||++
T Consensus 10 g~I~~~nvsf~Y~-------------------------------~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 58 (251)
T d1jj7a_ 10 GLVQFQDVSFAYP-------------------------------NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58 (251)
T ss_dssp CCEEEEEEEECCT-------------------------------TSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHH
T ss_pred CEEEEEEEEEECC-------------------------------CCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 3699999899889-------------------------------999997674438998499899999999984999999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98459799997000999988237876754---108997678876899999999997644027873245758978999872
Q 000576 198 ALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAA 274 (1412)
Q Consensus 198 ~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~ 274 (1412)
+|+|.++|+ +|+|.+||.++.+...+ +.++||+|+. +++..||+||+.|+...... .+...+.+.+
T Consensus 59 li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~tv~eni~~g~~~~~~---~~~~~~~~~~---- 127 (251)
T d1jj7a_ 59 LLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEP-QVFGRSLQENIAYGLTQKPT---MEEITAAAVK---- 127 (251)
T ss_dssp HHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSC-CCCSSBHHHHHHCSCSSCCC---HHHHHHHHHH----
T ss_pred HHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHCCCCH---HHHHHHHHHH----
T ss_conf 986143787---689988998531101378887765404565-00276346554542101302---7889999999----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 99999995899999975113456999999999299865553335755555783235579999997289837698479889
Q 000576 275 GIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTG 354 (1412)
Q Consensus 275 ~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsg 354 (1412)
......+.+|++..+|.+++.+. .|||||||||+|||+++.+|++++||||||+
T Consensus 128 -------------------------~~~~~~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs~ 181 (251)
T d1jj7a_ 128 -------------------------SGAHSFISGLPQGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATSA 181 (251)
T ss_dssp -------------------------HTCHHHHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred -------------------------HHHHHHHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf -------------------------98999998561211136751676-6895470489986044568707871675765
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9989999999999999985298599998459236984258499981993999549444999
Q 000576 355 LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 355 LDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~ 415 (1412)
||+.+..+|++.|+++.+..+.|+++ ++|... ....+|+|++|++|+++++|+++++++
T Consensus 182 LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~-~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 182 LDANSQLQVEQLLYESPERYSRSVLL-ITQHLS-LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp CCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHH-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 68536899999999976506989999-959799-998599999998999999889999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.8e-45 Score=318.68 Aligned_cols=216 Identities=26% Similarity=0.393 Sum_probs=189.3
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.++++|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf 81------011215778615888899989999999998720799999889999999999992992010100279988777
Q 000576 894 KQ------ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 894 ~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~gl 967 (1412)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEE
Q ss_conf 988887899999996099689995999999999999999999999857-9989999558858999864517688159499
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQE 1046 (1412)
Q Consensus 968 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~ 1046 (1412)
|||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.+. |.|||.++|++. ++.+.+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 998599
Q 000576 1047 IYVGPL 1052 (1412)
Q Consensus 1047 vy~G~~ 1052 (1412)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-44 Score=315.22 Aligned_cols=208 Identities=23% Similarity=0.333 Sum_probs=181.9
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC------CEEEEECCCCC
Q ss_conf 553153030567828839999859999789999998459799997000999988237876754------10899767887
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ------RTAAYISQHDV 237 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~------~~~~yv~Q~d~ 237 (1412)
....+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++||+|+..
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCC
T ss_conf 1489861505788699799998999898889999875886366---7732886768520875551155416643022522
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68999999999976440278732457589789998729999999589999997511345699999999929986555333
Q 000576 238 HIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 317 (1412)
Q Consensus 238 ~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~V 317 (1412)
+++.+||+||+.|+.+..+... .+....++.+|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred CCCCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCCH
T ss_conf 2799649999999999849998----------------------------------999999999999769903554894
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 57555557832355799999972898376984798899989999999999999985298599998459236984258499
Q 000576 318 GDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 318 G~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~Ii 397 (1412)
+ .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+ ++++.++|...++..++|+|+
T Consensus 139 ~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 S-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp S-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEE
T ss_pred H-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEE
T ss_conf 3-----4999999899986401058986874465565898885679999999986469-789998389999998699999
Q ss_pred EEECCEEEEECCHHHHH
Q ss_conf 98199399954944499
Q 000576 398 LISDGQIVYQGPREHVL 414 (1412)
Q Consensus 398 lL~~G~ivy~G~~~~~~ 414 (1412)
+|.+|++++.|+++++.
T Consensus 213 vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 213 VISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEETTEEEEEEETTTTT
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799999987999997
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.3e-44 Score=314.21 Aligned_cols=229 Identities=23% Similarity=0.403 Sum_probs=180.3
Q ss_pred CCCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCH
Q ss_conf 99994169993016999982588777880466799999888652101256655315303056782883999985999978
Q 000576 113 ISMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGK 192 (1412)
Q Consensus 113 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGK 192 (1412)
++.....++|+|+++.+. ....++|+|+|+.+++|+.++|+||+||||
T Consensus 10 l~~~~g~I~~~nvsf~Y~--------------------------------~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 57 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYN--------------------------------DNEAPILKDINLSIEKGETVAFVGMSGGGK 57 (255)
T ss_dssp CCCCSCCEEEEEEEECSC--------------------------------SSSCCSEEEEEEEECTTCEEEEECSTTSSH
T ss_pred CCCCCCEEEEEEEEEEEC--------------------------------CCCCCCEECEEEEECCCCEEEEECCCCCCH
T ss_conf 777788799998899959--------------------------------999760644389983998999988999809
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999845979999700099998823787675---41089976788768999999999976440278732457589789
Q 000576 193 TTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELAR 269 (1412)
Q Consensus 193 STLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~ 269 (1412)
|||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|+ .++++.||+||+.|+...
T Consensus 58 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~-~~lf~~Ti~eNi~~g~~~--------------- 118 (255)
T d2hyda1 58 STLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD-NILFSDTVKENILLGRPT--------------- 118 (255)
T ss_dssp HHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS-CCCCSSBHHHHHGGGCSS---------------
T ss_pred HHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECC-CCCCCCCHHHHHHCCCCC---------------
T ss_conf 99999997127863---00015399875307888863414565101-568998799998515867---------------
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99872999999958999999751134569999999992998655533357555557832355799999972898376984
Q 000576 270 REKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMD 349 (1412)
Q Consensus 270 ~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllD 349 (1412)
.+.+...+++...+ ..+. +..|+++.||.+|+.+. .||||||||++|||+++.+|++++||
T Consensus 119 ----------~~~~~~~~al~~~~-----l~~~---i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ililD 179 (255)
T d2hyda1 119 ----------ATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILD 179 (255)
T ss_dssp ----------CCHHHHHHHHHHTT-----CHHH---HHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----------CCHHHHHHHHHHHC-----CHHH---HHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf ----------99999999999969-----7999---97362420103338889-84999999999999985599899983
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 798899989999999999999985298599998459236984258499981993999549444999
Q 000576 350 EISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 350 EptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~ 415 (1412)
||||+||+.+...|.+.++++.+ ++|+|+ ++|... ....+|+|++|++|+++..|+++++++
T Consensus 180 Epts~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 180 EATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp STTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 76544797799999999998753--888999-968999-998599999998999999889999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.4e-43 Score=308.14 Aligned_cols=206 Identities=22% Similarity=0.259 Sum_probs=171.5
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-------CEEEEECCCC
Q ss_conf 553153030567828839999859999789999998459799997000999988237876754-------1089976788
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-------RTAAYISQHD 236 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-------~~~~yv~Q~d 236 (1412)
....+|+|+|+.+++||+++|+|||||||||||++|+|...|+ +|+|.++|.++.....+ +.++||+|+.
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCH
T ss_conf 2089871337788499799998899998216557506887777---6626999998576885551231255577880412
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 768999999999976440278732457589789998729999999589999997511345699999999929986-5553
Q 000576 237 VHIGEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDV-CADT 315 (1412)
Q Consensus 237 ~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~-~~dT 315 (1412)
.+++++||+||+.|+...+..+... . .+....+..+|+.+||++ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAMS-------G------------------------EERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCCC-------H------------------------HHHHHHHHHHHHHTTCCGGGTTC
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCCC-------H------------------------HHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 4176866888775788872247899-------9------------------------99999999988762423455348
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCE
Q ss_conf 33575555578323557999999728983769847988999899999999999999852985999984592369842584
Q 000576 316 MVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDD 395 (1412)
Q Consensus 316 ~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~ 395 (1412)
.+. .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+ ++++.++|...++ .++|+
T Consensus 142 ~p~-----~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 KPN-----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC-CEEEEECSCHHHH-TTSSE
T ss_pred CHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC-CEEEEECCCHHHH-HHCCE
T ss_conf 802-----3899999999987565227888994687654698999999999999998439-9999987888999-86998
Q ss_pred EEEEECCEEEEECCH
Q ss_conf 999819939995494
Q 000576 396 IILISDGQIVYQGPR 410 (1412)
Q Consensus 396 IilL~~G~ivy~G~~ 410 (1412)
|++|.+|+++..|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEECCC
T ss_conf 999989999995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-43 Score=309.55 Aligned_cols=207 Identities=28% Similarity=0.310 Sum_probs=106.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--CCEEEEECCCCCCCCCC
Q ss_conf 5315303056782883999985999978999999845979999700099998823787675--41089976788768999
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP--QRTAAYISQHDVHIGEM 242 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~l 242 (1412)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+... ++.++||+|.+..++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999997644027873245758978999872999999958999999751134569999999992998655533357555
Q 000576 243 TVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMI 322 (1412)
Q Consensus 243 TVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~ 322 (1412)
||+|++.|.+.+.+... .+....++.+++.++|.+-.|..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred CHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf 67788898998617998----------------------------------9999999999986797888850453----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECC
Q ss_conf 55783235579999997289837698479889998999999999999998529859999845923698425849998199
Q 000576 323 RGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDG 402 (1412)
Q Consensus 323 rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G 402 (1412)
.+|||||||++||++|+.+|++++|||||+|||+.++.+|.+.+++++. . +++|+..+|...++..++|+|++|.+|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred -HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf -3799898999999998659998873379889798999999999999996-5-998999959899999969999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 3999549444999
Q 000576 403 QIVYQGPREHVLE 415 (1412)
Q Consensus 403 ~ivy~G~~~~~~~ 415 (1412)
++++.|+++++.+
T Consensus 210 ~iv~~g~~~el~~ 222 (238)
T d1vpla_ 210 TIVETGTVEELKE 222 (238)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999928999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.6e-44 Score=312.59 Aligned_cols=229 Identities=24% Similarity=0.401 Sum_probs=179.9
Q ss_pred CCCCEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHH
Q ss_conf 99941699930169999825887778804667999998886521012566553153030567828839999859999789
Q 000576 114 SMPEIEVRFEHLKVEAEAYVGSRALPTFFNFCANIIEGLLNSLNILSSRKKHITILKGVSGIIRPGRMTLLLGPPASGKT 193 (1412)
Q Consensus 114 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GSGKS 193 (1412)
+-++.+++|+|+++.+. ....++|+|+|+.+++|+.++|+||||||||
T Consensus 8 ~~~~g~I~~~nvsf~Y~--------------------------------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKS 55 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYP--------------------------------GREVPALRNINLKIPAGKTVALVGRSGSGKS 55 (253)
T ss_dssp SCCCCCEEEEEEEECSS--------------------------------SSSCCSEEEEEEEECTTCEEEEEECTTSSHH
T ss_pred CCCCEEEEEEEEEEEEC--------------------------------CCCCCEEECEEEEECCCCEEEEECCCCCHHH
T ss_conf 77830799998899929--------------------------------9997635332899859999999999998599
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999998459799997000999988237876754---10899767887689999999999764402787324575897899
Q 000576 194 TLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLTELARR 270 (1412)
Q Consensus 194 TLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~ 270 (1412)
||+++|+|.++|+ +|+|.++|.++.+.... +.++||+|+ .+++..|+++|+.|+.....
T Consensus 56 TLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-~~l~~~ti~~n~~~~~~~~~-------------- 117 (253)
T d3b60a1 56 TIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAYARTEEY-------------- 117 (253)
T ss_dssp HHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSS-CCCCSSBHHHHHHTTTTSCC--------------
T ss_pred HHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEEC-CCCCCCCHHHHHHHCCCCCC--------------
T ss_conf 9999986216888---46898788012111066542068799502-54478620243320572208--------------
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98729999999589999997511345699999999929986555333575555578323557999999728983769847
Q 000576 271 EKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDE 350 (1412)
Q Consensus 271 e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDE 350 (1412)
+.+...+++...+ ..+. +-.|+++.||.+|+.+. .|||||||||+|||+|+.+|++++|||
T Consensus 118 ----------~~~~i~~a~~~~~-----l~~~---i~~l~~gl~t~~~~~~~-~LSGGqkQRvaiARal~~~p~ililDE 178 (253)
T d3b60a1 118 ----------SREQIEEAARMAY-----AMDF---INKMDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILDE 178 (253)
T ss_dssp ----------CHHHHHHHHHTTT-----CHHH---HHHSTTGGGSBCCTTSC-SSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred ----------CHHHHHHHHHHHH-----HHHH---HHHCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf ----------9999999999981-----7999---97355441014348889-849999999999999954998899516
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98899989999999999999985298599998459236984258499981993999549444999
Q 000576 351 ISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 351 ptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~~~~~~~ 415 (1412)
|||+||+.+...|++.|+++.+ ++|+| .++|... ....+|+|++|.+|+|+++|+++++++
T Consensus 179 pts~LD~~~~~~i~~~l~~l~~--~~Tvi-~itH~l~-~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 179 ATSALDTESERAIQAALDELQK--NRTSL-VIAHRLS-TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHT--TSEEE-EECSCGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--CCEEE-EEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4445898899999999987522--78899-9988799-998599999998999999889999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.2e-44 Score=313.73 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=184.0
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951012231440123115457750540030777718809999767999844699646199778707899999693078
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~ 894 (1412)
++++|+++++. + .+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~------------~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK------------N--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS------------S--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC------------C--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949------------9--78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 1-011215778615888899989999999998720799999889999999999992992010100279988777988887
Q 000576 895 Q-ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 895 ~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 973 (1412)
. ...+|.+|||+|+..++|.+||+|++.|...++... . +++++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 89999999609968999599999999999999999999985-79989999558858999864517688159499998599
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 974 Rl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++.+..|++++|.+ |+++..|+.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.3e-43 Score=306.79 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=178.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 30567828839999859999789999998459799997000999988237876754-10899767887689999999999
Q 000576 171 GVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ-RTAAYISQHDVHIGEMTVRETLA 249 (1412)
Q Consensus 171 ~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~ 249 (1412)
|+|+.++ ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 76440278732457589789998729999999589999997511345699999999929986555333575555578323
Q 000576 250 FSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQ 329 (1412)
Q Consensus 250 f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGq 329 (1412)
|+.+... +. +....++++++.+||++.+|..+. .|||||
T Consensus 93 ~~l~~~~------------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNVE------------RV------------------------ERDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTSC------------HH------------------------HHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCCC------------HH------------------------HHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 5323367------------78------------------------899999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 55799999972898376984798899989999999999999985298599998459236984258499981993999549
Q 000576 330 RKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409 (1412)
Q Consensus 330 rkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~ 409 (1412)
||||+||++++.+|++++|||||+|||+.++..+.+.++++.+..+.| ++.++|...++..++|+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976-9998189999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 44499999863987999999668898
Q 000576 410 REHVLEFFEFMGFKCPERKGVADFLQ 435 (1412)
Q Consensus 410 ~~~~~~~F~~lGf~cp~~~~~adfl~ 435 (1412)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-42 Score=304.76 Aligned_cols=205 Identities=24% Similarity=0.373 Sum_probs=149.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCC
Q ss_conf 53153030567828839999859999789999998459799997000999988237876754----10899767887689
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAYISQHDVHIG 240 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 240 (1412)
...+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. ..++|++|+...++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 988883025788899799999999985999999996788888---03898424434466088888742355676554577
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 9999999997644027873245758978999872999999958999999751134569999999992-998655533357
Q 000576 241 EMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGD 319 (1412)
Q Consensus 241 ~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~L-gL~~~~dT~VG~ 319 (1412)
.+||+||+.+++........ .....+.++..+ +|++.+|..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred CCCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH-
T ss_conf 63699999988873278889-----------------------------------999999999874176888758543-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 55555783235579999997289837698479889998999999999999998529859999845923698425849998
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL 399 (1412)
.|||||||||+||++|+.+|++++|||||+|||+.+..++++.++++.+ . +++|+.++|...++..++|+|++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEE
T ss_conf ----3899999999999999829987400398867999999999999999996-8-998999958899999969999999
Q ss_pred ECCEEEEECCHHHHH
Q ss_conf 199399954944499
Q 000576 400 SDGQIVYQGPREHVL 414 (1412)
Q Consensus 400 ~~G~ivy~G~~~~~~ 414 (1412)
.+|++++.|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEECCHHHHH
T ss_conf 899999984899984
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-42 Score=303.70 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=193.4
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.+.++|++.++. ++.+|+|+|+.+++||.+||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEEC-------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 789995899999-------------9999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHH
Q ss_conf 81--0112157786158888999899999999987207999998899999999999929920101002799887779888
Q 000576 894 KQ--ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQ 971 (1412)
Q Consensus 894 ~~--~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGq 971 (1412)
.. ...++.++||+|+..+++.+|+.|++.|.+.++. .+..+.++.++++++.+++.+..+..+ +.+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHH
T ss_conf 46839887218675001546878667788898998617---998999999999998679788885045-----3379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 87899999996099689995999999999999999999999857998999955885899986451768815949999859
Q 000576 972 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGP 1051 (1412)
Q Consensus 972 rkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~ 1051 (1412)
|||++||++|+.+|++|+|||||+|||+.+...+++.++++.+.|+|||+++|+.+ ++...+|++++|. +|++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-9999699999998-999999928
Q ss_pred CCCCCHHHHHH
Q ss_conf 99890379875
Q 000576 1052 LGRHSSHLIKY 1062 (1412)
Q Consensus 1052 ~g~~~~~~~~y 1062 (1412)
+ +++.+-
T Consensus 217 ~----~el~~~ 223 (238)
T d1vpla_ 217 V----EELKER 223 (238)
T ss_dssp H----HHHHHH
T ss_pred H----HHHHHC
T ss_conf 9----999865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-43 Score=307.97 Aligned_cols=221 Identities=27% Similarity=0.371 Sum_probs=177.0
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCC
Q ss_conf 553153030567828839999859999789999998459799997000999988237876754----1089976788768
Q 000576 164 KHITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ----RTAAYISQHDVHI 239 (1412)
Q Consensus 164 ~~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 239 (1412)
+..++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|+...+
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9968871217998899799999999984999999997797688---7379999996640569999983387257764247
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999997644027873245758978999872999999958999999751134569999999992998655533357
Q 000576 240 GEMTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 319 (1412)
Q Consensus 240 ~~lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~ 319 (1412)
+++||+||+.+++...+..... ..-.. ...+ +. .+....++.+++.+++++.+|..++
T Consensus 92 ~~ltv~enl~~~~~~~~~~~~~-------~~~~~-~~~~--~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~- 149 (254)
T d1g6ha_ 92 KEMTVLENLLIGEICPGESPLN-------SLFYK-KWIP--KE-----------EEMVEKAFKILEFLKLSHLYDRKAG- 149 (254)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHH-------HHHHC-SSCC--CC-----------HHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCCEEEEEEEEHHHHCCCCCHH-------HHHHH-CCCC--CH-----------HHHHHHHHHHHHHCCCCHHCCCCHH-
T ss_conf 8874232143013330345045-------66542-1353--28-----------9999999999876196302059535-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 55555783235579999997289837698479889998999999999999998529859999845923698425849998
Q 000576 320 EMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILI 399 (1412)
Q Consensus 320 ~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL 399 (1412)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|.+.++++.. .+++|+.++|..+++.+++|+|++|
T Consensus 150 ----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm 223 (254)
T d1g6ha_ 150 ----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVM 223 (254)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred ----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEE
T ss_conf ----6991888899999999759272324397656999999999999999997--8998999947699999869999999
Q ss_pred ECCEEEEECCHHHHHH
Q ss_conf 1993999549444999
Q 000576 400 SDGQIVYQGPREHVLE 415 (1412)
Q Consensus 400 ~~G~ivy~G~~~~~~~ 415 (1412)
++|+++..|+.+++.+
T Consensus 224 ~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 224 FNGQIIAEGRGEEEIK 239 (254)
T ss_dssp ETTEEEEEEESHHHHH
T ss_pred ECCEEEEEECHHHHHH
T ss_conf 6998999966899865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.7e-42 Score=301.92 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=137.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC----------------CCE
Q ss_conf 5315303056782883999985999978999999845979999700099998823787675----------------410
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP----------------QRT 228 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----------------~~~ 228 (1412)
...+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCC
T ss_conf 999881506688699799999899982999999997476678---99779999993367752000023517679997454
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899767887689999999999764-4027873245758978999872999999958999999751134569999999992
Q 000576 229 AAYISQHDVHIGEMTVRETLAFSA-RCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKIL 307 (1412)
Q Consensus 229 ~~yv~Q~d~~~~~lTVrEtl~f~a-~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~L 307 (1412)
++||+|+...++.+||.||+.|+. +..+. .+. +....+..+++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKH------------------------DARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CHH------------------------HHHHHHHHHHHHT
T ss_pred EEEEEECHHHCCCHHCCHHHHHHHHHHCCC----------CHH------------------------HHHHHHHHHHHHC
T ss_conf 489983323141101021365657876299----------989------------------------9999999999982
Q ss_pred CCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCH
Q ss_conf 99865-55333575555578323557999999728983769847988999899999999999999852985999984592
Q 000576 308 GLDVC-ADTMVGDEMIRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPA 386 (1412)
Q Consensus 308 gL~~~-~dT~VG~~~~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~ 386 (1412)
||.+- .|...+ .|||||||||+||++|+.+|+++++||||+|||+.++.+|.+.++++.+ . +++++.++|..
T Consensus 137 ~l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl 209 (258)
T d1b0ua_ 137 GIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEM 209 (258)
T ss_dssp TCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCH
T ss_pred CCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-C-CCCEEEEECCH
T ss_conf 995244306822-----0567788898999998439987885245556887888899876554103-6-88338994899
Q ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 36984258499981993999549444999
Q 000576 387 PEAYDLFDDIILISDGQIVYQGPREHVLE 415 (1412)
Q Consensus 387 ~e~~~lfD~IilL~~G~ivy~G~~~~~~~ 415 (1412)
.++..++|+|++|.+|++++.|++++++.
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998699999997999999849999983
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.9e-44 Score=315.37 Aligned_cols=210 Identities=24% Similarity=0.355 Sum_probs=166.0
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5315303056782883999985999978999999845979999700099998823787675---4108997678876899
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVP---QRTAAYISQHDVHIGE 241 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 241 (1412)
.+++|+|||+.++||+.++|+||+|||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++ +++.
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~ 89 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDS-AIMA 89 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSS-CCCC
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCC-CCCC
T ss_conf 984142258998599999999999997999999999960989---877988998844246788874367975665-4578
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999764402787324575897899987299999995899999975113456999999999299865553335755
Q 000576 242 MTVRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 321 (1412)
Q Consensus 242 lTVrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~ 321 (1412)
.||+||+.++...... . +...+.. +.++.. -.+..+++..||.+|+.+
T Consensus 90 ~ti~eNi~~~~~~~~~--~-~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~i~~~g 137 (242)
T d1mv5a_ 90 GTIRENLTYGLEGDYT--D-EDLWQVL---DLAFAR--------------------------SFVENMPDQLNTEVGERG 137 (242)
T ss_dssp EEHHHHTTSCTTSCSC--H-HHHHHHH---HHHTCT--------------------------TTTTSSTTGGGCEESTTS
T ss_pred CCHHHHEECCCCCCCC--H-HHHHHHH---HHHHHH--------------------------HHHCCCCCCCCCCCCCCC
T ss_conf 5345430124455542--3-5677899---999755--------------------------542037421015236878
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEEC
Q ss_conf 55578323557999999728983769847988999899999999999999852985999984592369842584999819
Q 000576 322 IRGISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 322 ~rgLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~ 401 (1412)
. .|||||||||+|||+++.+|++++|||||++||+.+...|++.++++.+ +.|+|+ ++|....+ ..+|+|++|++
T Consensus 138 ~-~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~-~~~D~i~vl~~ 212 (242)
T d1mv5a_ 138 V-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLV-IAHRLSTI-VDADKIYFIEK 212 (242)
T ss_dssp B-CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEE-ECCSHHHH-HHCSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHH-HHCCEEEEEEC
T ss_conf 9-8799999999999998529989996588655698899999887888717--998999-97879999-84999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 93999549444999
Q 000576 402 GQIVYQGPREHVLE 415 (1412)
Q Consensus 402 G~ivy~G~~~~~~~ 415 (1412)
|+++++|+++++++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.9e-42 Score=299.19 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=184.8
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.|+++||+.++. ...+|+|||+.+++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH-H
Q ss_conf 810----------------11215778615888899989999999998720799999889999999999992992010-1
Q 000576 894 KQE----------------TFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-Q 956 (1412)
Q Consensus 894 ~~~----------------~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-~ 956 (1412)
... ..++.+|||+|+..+.|.+||.|++.+..... ...+..+.++.+.++++.+++.+.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCC
Q ss_conf 00279988777988887899999996099689995999999999999999999999857998999955885899986451
Q 000576 957 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1036 (1412)
Q Consensus 957 ~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~ 1036 (1412)
... ..|||||+||++||++|+.+|++|++||||+|||+.+...|++.++++.+.|.|||+++|+.. ++...+|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 7688159499998599
Q 000576 1037 LFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1037 llll~~gG~~vy~G~~ 1052 (1412)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-42 Score=304.33 Aligned_cols=214 Identities=22% Similarity=0.326 Sum_probs=181.1
Q ss_pred CEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 16899510122314401231154577505400307777188099997679998446996461997787078999996930
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~ 892 (1412)
.-++++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHCCCCCCCCCCC
Q ss_conf 7810---1121-5778615888899989999999998720799999889999999999992-992010100279988777
Q 000576 893 KKQE---TFAR-ISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELV-ELNLLRQALVGLPGVNGL 967 (1412)
Q Consensus 893 ~~~~---~~~~-~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~vg~~~~~gl 967 (1412)
.... ...+ -++|++|+..++|.+||+|++.+.+..+.. .+..+..++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHC
T ss_conf 446608888874235567655457763699999988873278----88999999999987417688875854-----338
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 98888789999999609968999599999999999999999999985799899995588589998645176881594999
Q 000576 968 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEI 1047 (1412)
Q Consensus 968 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~v 1047 (1412)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.++++.+.|.||++++|+.. ++.+.+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCC
Q ss_conf 98599
Q 000576 1048 YVGPL 1052 (1412)
Q Consensus 1048 y~G~~ 1052 (1412)
+.|+.
T Consensus 219 ~~g~~ 223 (240)
T d1ji0a_ 219 LEGKA 223 (240)
T ss_dssp EEEEH
T ss_pred EECCH
T ss_conf 98489
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-42 Score=302.86 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.3
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
-+.++|++.+++ ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCHHHHCCC
Q ss_conf 8101----12157786158888999899999999987207----------999998899999999999929920101002
Q 000576 894 KQET----FARISGYCEQNDIHSPQVTVYESLLYSAWLRL----------SPEVDSKTRKMFIEEVMELVELNLLRQALV 959 (1412)
Q Consensus 894 ~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~l~~~~~~~v 959 (1412)
.... .++-++|++|+...++.+||+|++.+.+..+. ......++..+.++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 79988777988887899999996099689995999999999999999999999857998999955885899986451768
Q 000576 960 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1039 (1412)
Q Consensus 960 g~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~lll 1039 (1412)
+ .||||||||+.||++|+.+|++|+|||||+|||+.+...+++.++++.+.|.||++++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 81594999985999
Q 000576 1040 LKRGGQEIYVGPLG 1053 (1412)
Q Consensus 1040 l~~gG~~vy~G~~g 1053 (1412)
|.+ |+++..|+..
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-43 Score=307.52 Aligned_cols=211 Identities=25% Similarity=0.427 Sum_probs=172.4
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.++|+||+|+|+. +...+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------HHHHCCCCCCC
Q ss_conf 81---011215778615888899989999999998720799999889999999999992992-------01010027998
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-------LLRQALVGLPG 963 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~vg~~~ 963 (1412)
.. ..+++.++||+|+..++ ..||+|++.+.. ...+.++ ++++.+..++. .-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 87779888878999999960996899959999999999999999999998579989999558858999864517688159
Q 000576 964 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRG 1043 (1412)
Q Consensus 964 ~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~g 1043 (1412)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++.+ ++|+|+++|+++ ..+.+|++++|. +
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf -86698898987544344416513556477655598999999999999858-998999978899--998499999998-9
Q ss_pred CEEEEECCC
Q ss_conf 499998599
Q 000576 1044 GQEIYVGPL 1052 (1412)
Q Consensus 1044 G~~vy~G~~ 1052 (1412)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7e-42 Score=299.15 Aligned_cols=213 Identities=24% Similarity=0.395 Sum_probs=175.5
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 71689951012231440123115457750540030777718809999767999844699646199778707899999693
Q 000576 812 PHSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 812 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~ 891 (1412)
...++++||+|+|+. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHH-------HHCCCCC
Q ss_conf 0781---01121577861588889998999999999872079999988999999999999299201-------0100279
Q 000576 892 PKKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLL-------RQALVGL 961 (1412)
Q Consensus 892 ~~~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~ 961 (1412)
+... ..+++.++||+|+..++ ..||+|++.|.. .+.+++ .+.++++..++.+. .++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 753078888634145651015689-987999985158-----679999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE
Q ss_conf 98877798888789999999609968999599999999999999999999985799899995588589998645176881
Q 000576 962 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLK 1041 (1412)
Q Consensus 962 ~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~ 1041 (1412)
.+ ..||||||||++|||+|+.+|+|++||||||+||..++..|++.++++.+ ++|+|+++|+++ ....+|++++|.
T Consensus 151 ~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 88-98499999999999998559989998376544797799999999998753-888999968999--998599999998
Q ss_pred CCCEEEEECCC
Q ss_conf 59499998599
Q 000576 1042 RGGQEIYVGPL 1052 (1412)
Q Consensus 1042 ~gG~~vy~G~~ 1052 (1412)
+|+++..|+.
T Consensus 227 -~G~iv~~G~~ 236 (255)
T d2hyda1 227 -NGHIVETGTH 236 (255)
T ss_dssp -TTEEEEEECH
T ss_pred -CCEEEEECCH
T ss_conf -9999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-41 Score=296.52 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=173.8
Q ss_pred CEEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 16899510122314401231154577505400307777188099997679998446996461997787078999996930
Q 000576 813 HSLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 813 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~ 892 (1412)
..++|+||+|+|+. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH-------HCCCCCC
Q ss_conf 781---011215778615888899989999999998720799999889999999999992992010-------1002799
Q 000576 893 KKQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLR-------QALVGLP 962 (1412)
Q Consensus 893 ~~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~vg~~ 962 (1412)
... ..+++.++||+|+..++ ..|+++++.+.. +...+.+ .++++++..++.+.. ++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----2208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 88777988887899999996099689995999999999999999999999857998999955885899986451768815
Q 000576 963 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 963 ~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~ 1042 (1412)
...||||||||++|||+|+.+|+||+||||||+||..++..|++.|+++.+ ++|||+++|+++ ..+.+|++++|.
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~- 224 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE- 224 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf -898499999999999999549988995164445898899999999987522-788999988799--998599999998-
Q ss_pred CCEEEEECCC
Q ss_conf 9499998599
Q 000576 1043 GGQEIYVGPL 1052 (1412)
Q Consensus 1043 gG~~vy~G~~ 1052 (1412)
+|+++..|+.
T Consensus 225 ~G~Iv~~G~~ 234 (253)
T d3b60a1 225 DGIIVERGTH 234 (253)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
T ss_conf 9999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-41 Score=296.13 Aligned_cols=216 Identities=24% Similarity=0.342 Sum_probs=172.7
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.++|+||+|+|+.. ....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH-----HHHHHHHHHHCCCCHHHHCCCCCCCCC
Q ss_conf 81---0112157786158888999899999999987207999998899-----999999999929920101002799887
Q 000576 894 KQ---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTR-----KMFIEEVMELVELNLLRQALVGLPGVN 965 (1412)
Q Consensus 894 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~-----~~~v~~vl~~l~l~~~~~~~vg~~~~~ 965 (1412)
.. ..+++.++||+|+..++ ..||+|++.|.. ......... +....+.++ .+.+-.++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~----~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGL----TQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSC----SSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 1101378887765404565002-763465545421----01302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 77988887899999996099689995999999999999999999999857-99899995588589998645176881594
Q 000576 966 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 966 glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG 1044 (1412)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.++++.+. |+|||+++|+++ ..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--998599999998-99
Q ss_pred EEEEECCC
Q ss_conf 99998599
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~vy~G~~ 1052 (1412)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-42 Score=303.20 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=171.0
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951012231440123115457750540030777718809999767999844699646199778707899999693078
Q 000576 815 LTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKK 894 (1412)
Q Consensus 815 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~ 894 (1412)
++++||+|+|+. .+.+|+|||+.++||+++||+|+||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------HHHHCCCCCCCC
Q ss_conf 1---011215778615888899989999999998720799999889999999999992992-------010100279988
Q 000576 895 Q---ETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELN-------LLRQALVGLPGV 964 (1412)
Q Consensus 895 ~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~vg~~~~ 964 (1412)
. ..+++.++||+|+..+++. |++|++.+.. ....+.+. +++.++..++. +..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-3454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 77798888789999999609968999599999999999999999999985799899995588589998645176881594
Q 000576 965 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGG 1044 (1412)
Q Consensus 965 ~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG 1044 (1412)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|||+++|+++ ....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCC
Q ss_conf 99998599
Q 000576 1045 QEIYVGPL 1052 (1412)
Q Consensus 1045 ~~vy~G~~ 1052 (1412)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.4e-41 Score=295.53 Aligned_cols=193 Identities=24% Similarity=0.376 Sum_probs=171.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 307777188099997679998446996461997787078999996930781-0112157786158888999899999999
Q 000576 845 SVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ-ETFARISGYCEQNDIHSPQVTVYESLLY 923 (1412)
Q Consensus 845 ~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 923 (1412)
|||+.+. +|.++|+||||||||||+++|+|... +.+|+|.+||.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98720799999889999999999992992010100279988777988887899999996099689995999999999999
Q 000576 924 SAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1003 (1412)
Q Consensus 924 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~ 1003 (1412)
.. + ..+..+++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999999857-9989999558858999864517688159499998599
Q 000576 1004 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 1004 ~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-41 Score=292.85 Aligned_cols=199 Identities=24% Similarity=0.342 Sum_probs=158.6
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 53153030567828839999859999789999998459799997000999988237876754108997678876899999
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTV 244 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 244 (1412)
..++|+|+|+.+++|++++|+||+|||||||+++|+|.++|+ +|+|.++| .++|++|+ .+++..||
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~-~~l~~~tv 113 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQF-SWIMPGTI 113 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSS-CCCCSEEH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECC-CCCCCCEE
T ss_conf 976773759998599999999899982999999995797478---82899999----------99998164-30267603
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999764402787324575897899987299999995899999975113456999999999299865553335755555
Q 000576 245 RETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRG 324 (1412)
Q Consensus 245 rEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rg 324 (1412)
+||+.|+.... ..+++...+.+ +....+..+.+..+|.+|+.+. .
T Consensus 114 ~eni~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~i~~l~~~~~~~~~~~~~-~ 158 (281)
T d1r0wa_ 114 KENIIFGVSYD--EYRYKSVVKAC--------------------------------QLQQDITKFAEQDNTVLGEGGV-T 158 (281)
T ss_dssp HHHHTTTSCCC--HHHHHHHHHHT--------------------------------TCHHHHTTSTTGGGCEECTTCT-T
T ss_pred ECCCCCCCCCC--CHHHHHHHHHH--------------------------------HHHHHHHHCHHHHHHHHHHHCC-C
T ss_conf 21420333456--05799999997--------------------------------7699998461233235555423-7
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEE
Q ss_conf 78323557999999728983769847988999899999999999999852985999984592369842584999819939
Q 000576 325 ISGGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQI 404 (1412)
Q Consensus 325 LSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~i 404 (1412)
|||||||||+|||+|+.+|++++|||||++||+.+..++++.+..... .++|+ +.++|.. +....+|+|++|.+|++
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tv-i~itH~~-~~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTR-ILVTSKM-EHLRKADKILILHQGSS 235 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEE-EEECSCH-HHHHTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEE-EEEECHH-HHHHHCCEEEEEECCEE
T ss_conf 799999999999999869635133385544898999999999998862-89999-9992528-99985999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 99549444999
Q 000576 405 VYQGPREHVLE 415 (1412)
Q Consensus 405 vy~G~~~~~~~ 415 (1412)
+++|+++++..
T Consensus 236 ~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 YFYGTFSELQS 246 (281)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHC
T ss_conf 99878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-38 Score=272.08 Aligned_cols=193 Identities=25% Similarity=0.388 Sum_probs=104.3
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 400307777188099997679998446996461997787078999996930781---01121577861588889998999
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQ---ETFARISGYCEQNDIHSPQVTVY 918 (1412)
Q Consensus 842 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTV~ 918 (1412)
.|++||+.+++||++||+|+||||||||+++|+|... .+|+|.++|.+... .......+|+.|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999987207999998899999999999929920101002799887779888878999999960-------99689995
Q 000576 919 ESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 991 (1412)
Q Consensus 919 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~-------~p~il~lD 991 (1412)
+.+.+... . ..+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999998579989999558858999864517688159499998599
Q 000576 992 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 992 EPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
|||+|||..+...+++.++++.+.|.|||+++|+++ ++.+..|++++|+ +|++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 877778989999999999999867999999967799-9999799999997-9989998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.7e-38 Score=270.86 Aligned_cols=186 Identities=22% Similarity=0.359 Sum_probs=149.8
Q ss_pred EEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 05400307777188099997679998446996461997787078999996930781011215778615888899989999
Q 000576 840 LVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYE 919 (1412)
Q Consensus 840 ~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 919 (1412)
..+|+|||+.+++||++||+|+||||||||+++|+|... +.+|.|.++|. ++|++|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999998720799999889999999999992-------9920101002799887779888878999999960996899959
Q 000576 920 SLLYSAWLRLSPEVDSKTRKMFIEEVMELV-------ELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992 (1412)
Q Consensus 920 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-------~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDE 992 (1412)
++.|.. ...... .+++++.. .+.+..++.++..+ ..||||||||++|||+|+.+|+|++|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999999999999999998579989999558858999864517688159499998599
Q 000576 993 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPL 1052 (1412)
Q Consensus 993 PTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1052 (1412)
||++||+.+...+++.+......++|+|+++|+++ ....+|++++|. +|++++.|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~-~G~i~~~Gt~ 241 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILH-QGSSYFYGTF 241 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEE-TTEEEEEECH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 55448989999999999988628999999925289--998599999998-9999998789
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.8e-37 Score=265.10 Aligned_cols=198 Identities=23% Similarity=0.353 Sum_probs=167.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 153030567828839999859999789999998459799997000999988237876754---10899767887689999
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ---RTAAYISQHDVHIGEMT 243 (1412)
Q Consensus 167 ~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 243 (1412)
+.|+|||+.+++||+++|+||||||||||+++|+|..+ + +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-C---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 15558888994898999998999809999999948879-9---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999976440278732457589789998729999999589999997511345699999999929986555333575555
Q 000576 244 VRETLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIR 323 (1412)
Q Consensus 244 VrEtl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~r 323 (1412)
+.+++.++..-+. .....+.+++.++|++..+..++
T Consensus 89 v~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHHHHCCCHHH---------------------------------------HHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 9887641001466---------------------------------------89999999986598767676844-----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 578323557999999728-------9837698479889998999999999999998529859999845923698425849
Q 000576 324 GISGGQRKRVTTGEMLVG-------PAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDI 396 (1412)
Q Consensus 324 gLSGGqrkRvsia~~l~~-------~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~I 396 (1412)
.|||||||||++|++++. +|++++|||||+|||..+...+.+.++++.. . +++|+.++|...++.+++|+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7-999999967799999979999
Q ss_pred EEEECCEEEEECCHHHHH
Q ss_conf 998199399954944499
Q 000576 397 ILISDGQIVYQGPREHVL 414 (1412)
Q Consensus 397 ilL~~G~ivy~G~~~~~~ 414 (1412)
++|.+|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-35 Score=255.46 Aligned_cols=196 Identities=21% Similarity=0.289 Sum_probs=146.4
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995101223144012311545775054003077771880999976799984469964619977870789999969307
Q 000576 814 SLTFDDVTYSVDMPQEMKLRGVLDDRLVLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPK 893 (1412)
Q Consensus 814 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~ 893 (1412)
.++++|+++.++ +.+|+|+|+.+++|++++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 81011215778615888899989999999998720799999889999999999992992010100279988777988887
Q 000576 894 KQETFARISGYCEQNDIHSPQVTVYESLLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRK 973 (1412)
Q Consensus 894 ~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 973 (1412)
.. .+..++|++|+..+...+|++|.+.+.+.++... ...+ .+.+.++.+++.+++.. + ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCCC-C-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----99999987488563012-6-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 899999996099689995999999999999999999999857998999955885899986451768815
Q 000576 974 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKR 1042 (1412)
Q Consensus 974 Rl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~ 1042 (1412)
|+.||++|+.+|++++|||||+|||..+...+++.++++.+.+.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.4e-34 Score=244.35 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=148.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 15303056782883999985999978999999845979999700099998823787675410899767887689999999
Q 000576 167 TILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRE 246 (1412)
Q Consensus 167 ~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 246 (1412)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976440278732457589789998729999999589999997511345699999999929986555333575555578
Q 000576 247 TLAFSARCQGVGSRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGIS 326 (1412)
Q Consensus 247 tl~f~a~~~~~~~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLS 326 (1412)
++.+.+...+.... .+ .+...++.+++.+. +..++ .||
T Consensus 90 ~l~~~~~~~~~~~~---------------------~~---------------~~~~~l~~~~~~~~-~~~~~-----~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------------------KN---------------EIMDALESVEVLDL-KKKLG-----ELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC---------------------HH---------------HHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHHCCCCCC---------------------HH---------------HHHHHHHHCCCCCC-CCCCC-----CCC
T ss_conf 99999975488637---------------------99---------------99999987488563-01268-----689
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEEC
Q ss_conf 323557999999728983769847988999899999999999999852985999984592369842584999819
Q 000576 327 GGQRKRVTTGEMLVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISD 401 (1412)
Q Consensus 327 GGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~ 401 (1412)
||||||+.+|++++.+|++++|||||+|||..+...+++.++++.+. +++++++.+|.. +++|.+..|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 71888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=1.9e-13 Score=104.87 Aligned_cols=80 Identities=18% Similarity=0.068 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 798888789999999609968999599999999999999999999985-7998999955885899986451768815949
Q 000576 967 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLLKRGGQ 1045 (1412)
Q Consensus 967 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~ 1045 (1412)
+++|++++..+++++..+|+++++|||+...+ .....+..+.+..+ .+.+++.++|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999859
Q 000576 1046 EIYVGP 1051 (1412)
Q Consensus 1046 ~vy~G~ 1051 (1412)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.19 E-value=2e-12 Score=97.92 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=94.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999859999789999998459799997000999988237876754--10899767887689999999999764402787
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVG 258 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~--~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~~~~ 258 (1412)
-++|.||||||||||+++++|.+.+. .|.+...+.+......+ ..+.+...........+..+...+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV-------- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 89999899938999999998148888---6469987713288887653112336677788754113455443--------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32457589789998729999999589999997511345699999999929986555333575555578323557999999
Q 000576 259 SRYEMLTELARREKAAGIKPDPDLDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMIRGISGGQRKRVTTGEM 338 (1412)
Q Consensus 259 ~r~~~~~~~~~~e~~~~i~p~~~~~~~~~~~~~~~~~~~~~~d~il~~LgL~~~~dT~VG~~~~rgLSGGqrkRvsia~~ 338 (1412)
.++ .+ +.....+++|+++|.+++++
T Consensus 71 ~~~------------------------------------------------------~~-~~~~~~~~~~~~~~~~l~~~ 95 (178)
T d1ye8a1 71 GSY------------------------------------------------------GV-NVQYFEELAIPILERAYREA 95 (178)
T ss_dssp TTE------------------------------------------------------EE-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------------------------------------------------------HC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 023------------------------------------------------------03-76256653201378999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 72898376984798899989999999999999985298599998459236984258499981993999549
Q 000576 339 LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDIILISDGQIVYQGP 409 (1412)
Q Consensus 339 l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~IilL~~G~ivy~G~ 409 (1412)
+...|+++++|||.... .........+.+.....+.+++++ +|. .+...+.|++..+.+|+++.-++
T Consensus 96 ~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~-~h~-~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 96 KKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVAT-IPI-RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEE-CCS-SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEE-ECC-HHHHHHHCEEEEEECCEEEEECC
T ss_conf 74099742302777310--045799999998750579789999-744-77898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=4.3e-08 Score=68.38 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 7798888789999999----6099689995999999999999999999999857998999955885899986451768
Q 000576 966 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1039 (1412)
Q Consensus 966 glSgGqrkRl~ia~~L----~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~lll 1039 (1412)
.+|.|||+...++..+ ..++++++.|||-++||+.....+.+.++..++ +.-||+|+|.|. +.+.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-887999989889--9973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=9.4e-08 Score=66.05 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 55578323557999999----72898376984798899989999999999999985298599998459236984258499
Q 000576 322 IRGISGGQRKRVTTGEM----LVGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 322 ~rgLSGGqrkRvsia~~----l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~Ii 397 (1412)
...+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+..+. .+-++ +++|+|++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qvi-itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFI-VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEE-EECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC---CCEEE-EEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554---88799-9989889997324289
Q ss_pred E--EECC
Q ss_conf 9--8199
Q 000576 398 L--ISDG 402 (1412)
Q Consensus 398 l--L~~G 402 (1412)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=3.7e-08 Score=68.78 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEE
Q ss_conf 77798888789999999----60996899959999999999999999999998579989999558858999864517688
Q 000576 965 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLL 1040 (1412)
Q Consensus 965 ~glSgGqrkRl~ia~~L----~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll 1040 (1412)
.-+|||||.++++|.-+ ..+++++++|||+++||......+.+.|++++..+.-+|+|+|+|. +.+..|.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--99736617999
Q ss_pred E
Q ss_conf 1
Q 000576 1041 K 1041 (1412)
Q Consensus 1041 ~ 1041 (1412)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.4e-06 Score=58.08 Aligned_cols=75 Identities=17% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 555783235579999997----2898376984798899989999999999999985298599998459236984258499
Q 000576 322 IRGISGGQRKRVTTGEML----VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDLFDDII 397 (1412)
Q Consensus 322 ~rgLSGGqrkRvsia~~l----~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~lfD~Ii 397 (1412)
++-+|||||.++++|-.+ +.+++++++|||.++||......+.+.|++++. ..+-++ +.+|.|++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 98
Q 000576 398 LI 399 (1412)
Q Consensus 398 lL 399 (1412)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.81 E-value=0.00047 Score=40.77 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=23.7
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 53030567828839999859999789999998459
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 168 iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-|+++.+=+.||++++|.|+||+|||||+.-++-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.68 E-value=0.00063 Score=39.91 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 9999999609968999599999999999999-999999985799899995588589998
Q 000576 975 LTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFE 1032 (1412)
Q Consensus 975 l~ia~~L~~~p~il~lDEPTsgLD~~ta~~i-~~~l~~~~~~g~Tvi~t~Hqps~~i~~ 1032 (1412)
+.-....+.+.+++++||.-+|-|+.....+ ...+..+.+.+..+++++|.+ ++.+
T Consensus 105 ~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 105 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 98775028977278554545686233200258888888862376137865202--3332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.62 E-value=4.8e-05 Score=47.51 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=73.0
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 400307777188099997679998446996461997--787078999996930781011215778615888899989999
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK--TTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYE 919 (1412)
Q Consensus 842 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~--~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 919 (1412)
-|+++.+-++||+++.|.|++|+|||||+.-++-.. ..|. . +.|+. ..++..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~---~----------------v~~~s------~E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK---K----------------VGLAM------LEESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC---C----------------EEEEE------SSSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC---C----------------EEEEE------ECCCHHH
T ss_conf 688874697898089999479997999999999726553366---3----------------45764------0111135
Q ss_pred HHH-HHH-HHCCCCCCCHHHHH-----HHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999-998-72079999988999-----99999999929920101002799887779888878999999960996899959
Q 000576 920 SLL-YSA-WLRLSPEVDSKTRK-----MFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 992 (1412)
Q Consensus 920 ~l~-f~a-~lr~~~~~~~~~~~-----~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDE 992 (1412)
... +.+ ....+.......+. ...++..+.+.-.. .+.-.+........+.....-...--.+|+++++|-
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGND---TFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSS---CEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 77699998645871010122222145677888988740352---146621433106899999865432136762599705
Q ss_pred CC-----CCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----9999--99999999999999857-9989999558
Q 000576 993 PT-----SGLD--ARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1025 (1412)
Q Consensus 993 PT-----sgLD--~~ta~~i~~~l~~~~~~-g~Tvi~t~Hq 1025 (1412)
.+ .+-+ ......+++.++++++. +++|+++.|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.0015 Score=37.23 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=28.3
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 60996899959999999999999999-99999857-998999955885
Q 000576 982 VANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1027 (1412)
Q Consensus 982 ~~~p~il~lDEPTsgLD~~ta~~i~~-~l~~~~~~-g~Tvi~t~Hqps 1027 (1412)
..+.+++++||+-+|=++.....+.. .++.+... +..+++|+|...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 546608853222358774566678987645432045442898524687
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0023 Score=36.01 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=30.3
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
Q ss_conf 28983769847988---9--998999999999999998529859999845923
Q 000576 340 VGPAQAFFMDEIST---G--LDSSTTFQIVNSLRQFIHILRGTTLISLLQPAP 387 (1412)
Q Consensus 340 ~~~~~vlllDEpts---g--LDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~ 387 (1412)
..+++++++|..+. + -|.....++++.|+.++...+.++ +.+||...
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~v-i~v~H~~K 181 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI-VFLHHASK 181 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE-EEEEEC--
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EHHHHCCC
T ss_conf 26765896281354226652322568999988777764479754-01310055
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.39 E-value=0.0016 Score=37.15 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567828839999859999789999998459
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.|=+++|++++|.|+||||||+|+.-++-.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 689869849999918999999999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.11 E-value=0.00017 Score=43.73 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=32.2
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
Q ss_conf 28983769847988999899999999999999852985999984592369842
Q 000576 340 VGPAQAFFMDEISTGLDSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEAYDL 392 (1412)
Q Consensus 340 ~~~~~vlllDEptsgLDs~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~~~l 392 (1412)
.+...++++||+.+|-|+.....+...+-+.....+.+++++.|+ .++.++
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY--FELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC--HHHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEC--HHHHHH
T ss_conf 897727855454568623320025888888886237613786520--233322
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00032 Score=41.93 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+|+.++++|+||.|||||+|+|.|...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.007 Score=32.76 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=73.3
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 54003077771880999976799984469964619977870789999969307810112157786158888999899999
Q 000576 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYES 920 (1412)
Q Consensus 841 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 920 (1412)
.++.+ +.||+++.|.|++|+|||||+.-|+.....| .-...+.+.. ...+-|+.-++.. -.+.+-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~~~~~~~~----~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDLLEVGELP----TGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCTTCCCCCC----CCCEEEEESSSCH---HHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCCCCCCCCC----CCCEEEEECCCHH---HHHHHH
T ss_conf 98689----5589589999289998999999999999769----9721112357----8736898512349---999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C-
Q ss_conf 999987207999998899999999999929920101002799887779888878999999960996899959999---9-
Q 000576 921 LLYSAWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 996 (1412)
Q Consensus 921 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs---g- 996 (1412)
+ .+.. .+...... ....+.+.+....+... ....- ..+.--.....+++++++|--+. +
T Consensus 86 l--~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 L--HALG---AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp H--HHHH---TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred H--HHHH---HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 9--9986---23686665----31233323214567420-----35789---9999988752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -9999999999999999857-99899995588
Q 000576 997 -LDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1026 (1412)
Q Consensus 997 -LD~~ta~~i~~~l~~~~~~-g~Tvi~t~Hqp 1026 (1412)
-|......+++.++.++.. +++|+++.|..
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.87 E-value=0.00046 Score=40.85 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0015 Score=37.26 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 289837698479889998999999999-99999852985999984
Q 000576 340 VGPAQAFFMDEISTGLDSSTTFQIVNS-LRQFIHILRGTTLISLL 383 (1412)
Q Consensus 340 ~~~~~vlllDEptsgLDs~t~~~i~~~-L~~~a~~~~~t~ii~l~ 383 (1412)
..+..++++||+.+|=++.....+... +..+.......++++.|
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH 162 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 162 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 546608853222358774566678987645432045442898524
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.00073 Score=39.47 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88099997679998446996461997
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+|..++++|+||+|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00047 Score=40.76 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999789999998459799
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
+++|.|++|||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.57 E-value=0.00047 Score=40.75 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=35.7
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCE
Q ss_conf 9999960996899959999999999999999999998579989999558858999864517
Q 000576 977 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1037 (1412)
Q Consensus 977 ia~~L~~~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l 1037 (1412)
+..+|=.+|++|+..|.. |..++...+ +.+.+|..|+.|+|-.+. +..++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCH--HHHHHHH
T ss_conf 999984138889845768---759999999----997249858998336766--7665432
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.55 E-value=0.00063 Score=39.88 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999978999999845979
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|++..|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00062 Score=39.93 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=20.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..+.+..|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.44 E-value=0.00057 Score=40.19 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7777188099997679998446996461997
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
...++.|.-+.|.|++||||||||++|.+..
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999837888999403566257899986530
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0014 Score=37.49 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=24.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6782883999985999978999999845979
Q 000576 174 GIIRPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 174 ~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|=+++|+++.|.||||||||||+.-++....
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8985997999995899999999999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.37 E-value=0.00073 Score=39.46 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 39999859999789999998459799997000999988
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG 217 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG 217 (1412)
+...|+|++|||||||+..|+.++......-|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.37 E-value=0.00034 Score=41.72 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8839999859999789999998459799997000999
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVT 214 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~ 214 (1412)
+|..++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.34 E-value=0.0014 Score=37.62 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.|..+.+.|+|||||||+.++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.30 E-value=0.0012 Score=38.05 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++|-..+|.|||||||||+.+.|+-++.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.27 E-value=0.0013 Score=37.80 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999789999998459799
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
..+++.||||+|||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.23 E-value=0.0013 Score=37.81 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0011 Score=38.28 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.++|.||||||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.16 E-value=0.002 Score=36.47 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 288399998599997899999984597
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
++|-...++|||||||||..+.|+-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.11 E-value=0.0016 Score=37.13 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099997679998446996461997
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
|.++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.09 E-value=0.029 Score=28.53 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=15.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 77771880999976799984469964
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDV 872 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~ 872 (1412)
.|-+++|+++.|.|++|+|||+|..-
T Consensus 20 ~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 20 HGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 68996983999994799999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.09 E-value=0.0022 Score=36.19 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999789999998459
Q 000576 180 RMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
+++.+.|+|||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.07 E-value=0.0018 Score=36.82 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=16.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999978999999845979
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0023 Score=36.04 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.|.+..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.03 E-value=0.0022 Score=36.20 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++|+|++|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.0021 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.++|+|+||+|||||+++|.|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0026 Score=35.66 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=25.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567828839999859999789999998459
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.00 E-value=0.0017 Score=36.94 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=23.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82883999985999978999999845979
Q 000576 176 IRPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 176 i~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++.+.++.|+|||||||||+.+.|+-++.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 46782899989999987999999999869
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0011 Score=38.30 Aligned_cols=27 Identities=48% Similarity=0.679 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 399998599997899999984597999
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDSS 206 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~~ 206 (1412)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.95 E-value=0.0023 Score=36.12 Aligned_cols=23 Identities=52% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.94 E-value=0.0028 Score=35.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599997899999984597
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.029 Score=28.54 Aligned_cols=28 Identities=39% Similarity=0.673 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++.+-+++.||||+|||++.++|+.++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9888678668998882289999999829
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.89 E-value=0.0026 Score=35.72 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 18809999767999844699646199778707899999693
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGY 891 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~ 891 (1412)
..|+++.|.|++||||||+.+.|+.+... --+.+++.
T Consensus 2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~----~~~~~~~d 38 (176)
T d1zp6a1 2 LGGNILLLSGHPGSGKSTIAEALANLPGV----PKVHFHSD 38 (176)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSS----CEEEECTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEEECHH
T ss_conf 99859999889999889999999999599----97990689
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0024 Score=35.98 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999978999999845979
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-....|+|||||||||+.+.|+.++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 72899989999998999999999859
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.86 E-value=0.0039 Score=34.46 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=23.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 56782883999985999978999999845
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG 201 (1412)
.|=+++|++++|.||||||||||..-++-
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69955887999985898988999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.84 E-value=0.0061 Score=33.17 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=28.1
Q ss_pred EEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 303-056782883999985999978999999845979
Q 000576 169 LKG-VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 169 L~~-vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|++ +.|=+++|+++.|.|+||+|||+|..-++-...
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9972079862885999991799998999999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0024 Score=35.91 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++|+|.+|+|||||++.|+|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.003 Score=35.32 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88099997679998446996461997
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.|.++.|+||||+||+||.+.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.0028 Score=35.52 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++|.|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.0039 Score=34.46 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=17.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 883999985999978999999845
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG 201 (1412)
+-++++++|+|||||||+.+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.69 E-value=0.004 Score=34.43 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 839999859999789999998459799
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.++++|.|+|||||||+.+.|+-++..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.025 Score=28.95 Aligned_cols=25 Identities=48% Similarity=0.744 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.-+++.||||+|||+|.++++.++.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.001 Score=38.40 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 880999976799984469964619977870789999
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNIT 887 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~ 887 (1412)
.|..++++|+||+|||||+|.|.+... ...|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.59 E-value=0.0038 Score=34.54 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0044 Score=34.11 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++|+|||||||||..+.|+-++.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0024 Score=35.96 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.|..+.+.|+|||||||+.+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0039 Score=34.50 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..-.++|.||||||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.52 E-value=0.0039 Score=34.50 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
...|+|||||||||+.+.|+-++.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999998999999999879
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.44 E-value=0.0041 Score=34.35 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|+.-.+++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0049 Score=33.81 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0064 Score=33.01 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567828839999859999789999998459
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.|=+++|+++.|.||||||||+|...++..
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 699768979999889988788999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.00025 Score=42.70 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=25.8
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 303056782883999985999978999999845979
Q 000576 169 LKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 169 L~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++.++.+.+| +++|+|||||||||+|.+|.--+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 70279974998-089988999987999999999966
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0048 Score=33.89 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 188099997679998446996461997
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0039 Score=34.48 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+.+.|||||||||+.+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.38 E-value=0.0047 Score=33.92 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.++++|+||+|||||+++|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.36 E-value=0.055 Score=26.65 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=27.0
Q ss_pred EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 53030-56782883999985999978999999845
Q 000576 168 ILKGV-SGIIRPGRMTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 168 iL~~v-s~~i~pG~~~~ilGp~GSGKSTLL~~LaG 201 (1412)
-|+++ .|=+++|+++.|.|+||+|||+|..-++.
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79885568996983999994799999999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.0061 Score=33.16 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.34 E-value=0.0053 Score=33.59 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+.|+|||||||||+.+.|+-++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.33 E-value=0.0042 Score=34.30 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++|+|||||||||+.+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.33 E-value=0.0053 Score=33.56 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.++|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.005 Score=33.73 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
...++.||||+||||+.++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.23 E-value=0.0063 Score=33.09 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.0042 Score=34.28 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|+|++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0066 Score=32.91 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=11.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-.++++|++|+|||||++.|+|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999899999899999999688
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.15 E-value=0.0074 Score=32.58 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.14 E-value=0.0069 Score=32.81 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599997899999984597
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
..-.+.|.||||+|||||+..|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.0076 Score=32.51 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|++|+|||||+++|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0068 Score=32.82 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997899999984597
Q 000576 182 TLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
..++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.12 E-value=0.007 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-++|+|.||+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.12 E-value=0.0069 Score=32.79 Aligned_cols=23 Identities=57% Similarity=0.842 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.0046 Score=34.02 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999789999998459799
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
-++|+|||||||+||++.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0054 Score=33.54 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+..-+.+.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.10 E-value=0.0067 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 188099997679998446996461997
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+.|.++.|.|.|||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.10 E-value=0.0075 Score=32.57 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099997679998446996461997
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0064 Score=33.03 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.0054 Score=33.55 Aligned_cols=27 Identities=41% Similarity=0.690 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+..-+++.||||+|||+|.+++++++.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 887578878998763047788787718
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.08 E-value=0.0071 Score=32.69 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 188099997679998446996461997
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
++|-.++|+|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.005 Score=33.73 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.07 E-value=0.0058 Score=33.34 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.06 E-value=0.0051 Score=33.68 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|-.-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.05 E-value=0.0045 Score=34.06 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997679998446996461997
Q 000576 856 TALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+||+|++++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0068 Score=32.83 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++.|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.01 E-value=0.005 Score=33.75 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECC
Q ss_conf 99997679998446996461997-7870789999969
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK-TTGYVTGNITISG 890 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~I~i~G 890 (1412)
.++|+|.+|||||||+..|..+. ..|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9999809999899999999999986798379998316
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.97 E-value=0.0067 Score=32.87 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-+.+.||+|+|||+|.+++++.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4887668988835999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.97 E-value=0.008 Score=32.35 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..++|+|||||||+.+.||-++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0067 Score=32.90 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-.+||+|.+|+|||||+|+|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.011 Score=31.51 Aligned_cols=25 Identities=44% Similarity=0.721 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599997899999984597
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
|=-++++|++++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.90 E-value=0.007 Score=32.76 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.88 E-value=0.0096 Score=31.82 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++|-|||||||||..+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0076 Score=32.51 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.|+||||||||||.+.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.0078 Score=32.44 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+=+++.||||+|||++.++++.+..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.86 E-value=0.009 Score=31.99 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+.++|+|||||||+.+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.86 E-value=0.0066 Score=32.95 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.84 E-value=0.011 Score=31.46 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++|+|.+|+|||||++.|+|.
T Consensus 8 I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999688
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.00036 Score=41.54 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=26.3
Q ss_pred ECCEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 00307777188099997679998446996461
Q 000576 843 LNSVSGAFRPGVLTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 843 L~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~ 874 (1412)
.++.+..+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.80 E-value=0.0059 Score=33.25 Aligned_cols=24 Identities=50% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999859999789999998459799
Q 000576 182 TLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
+++.||||+||||+.+++++++.-
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.77 E-value=0.0057 Score=33.35 Aligned_cols=25 Identities=48% Similarity=0.717 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999789999998459799
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
-+++.||||+||||+.++++.++..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.0089 Score=32.05 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.|++|||||+++|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.76 E-value=0.0068 Score=32.86 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.72 E-value=0.0066 Score=32.91 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|+|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.01 Score=31.59 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.0097 Score=31.78 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.65 E-value=0.0067 Score=32.89 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.++|+|||||||+.+.|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.014 Score=30.63 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=31.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 39999859999789999998459799997000999988237876754108997678876899
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGE 241 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 241 (1412)
-+++|.|++||||||+.+.|...+.... . ...+..++++|-|.+.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~--~---------------~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWP--E---------------HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTST--T---------------CCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHC--C---------------CCCEEEEEEEEEECCC
T ss_conf 8999968999987689999999973046--8---------------9965999521568984
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.015 Score=30.43 Aligned_cols=29 Identities=41% Similarity=0.630 Sum_probs=16.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67828839999859999789999998459
Q 000576 174 GIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 174 ~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
|=+++|++|.+.||||||||||+..++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99667358998057774789999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0072 Score=32.68 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 77771880999976799984469964619
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.62 E-value=0.0073 Score=32.63 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999789999998459799
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.+..|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.013 Score=30.84 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|.+|+|||||++.|.|+.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.60 E-value=0.011 Score=31.30 Aligned_cols=23 Identities=57% Similarity=0.720 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++.||||+||||+.++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.0091 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.++|+|.+++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.54 E-value=0.009 Score=32.00 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-++++|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.54 E-value=0.0092 Score=31.93 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.52 E-value=0.012 Score=31.06 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|+|.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.014 Score=30.80 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++|-|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.50 E-value=0.011 Score=31.42 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|+||+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.46 E-value=0.008 Score=32.37 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997679998446996461997
Q 000576 856 TALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.42 E-value=0.013 Score=30.87 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.41 E-value=0.015 Score=30.59 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.40 E-value=0.012 Score=31.13 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999976799984469964619
Q 000576 854 VLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.40 E-value=0.014 Score=30.65 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-++++|++|+|||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.009 Score=32.01 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999976799984469964619977
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.38 E-value=0.0087 Score=32.10 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5678288399998599997899999984597999
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS 206 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~ 206 (1412)
...++.+.-++|.|++||||||||++|++..++.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999837888999403566257899986530145
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.013 Score=31.02 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
..+.|+||||+||+||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.011 Score=31.47 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99976799984469964619977
Q 000576 856 TALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
+.|+|||||||+||++.|+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.34 E-value=0.018 Score=29.90 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=20.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.|.++.+.|.|||||||+.+.|+-++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9986999989999998999999998877
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.011 Score=31.44 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=33.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 828839999859999789999998459799997000999988237876754108997678
Q 000576 176 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQH 235 (1412)
Q Consensus 176 i~pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~ 235 (1412)
+.|. =++++||+|+|||-|.+.||+.++- -=+..++-.. -.+|||..+
T Consensus 47 i~ks-NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~D 94 (443)
T d1g41a_ 47 VTPK-NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGKE 94 (443)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCCC
T ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEECC
T ss_conf 5656-4799899998899999999987389-----8898625511------411111044
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.013 Score=31.00 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997899999984597
Q 000576 182 TLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
++++|+|++|||||++.|.+.-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.28 E-value=0.018 Score=29.95 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999789999998459799
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
+...++|.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.28 E-value=0.0095 Score=31.83 Aligned_cols=28 Identities=43% Similarity=0.395 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.++.+++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.27 E-value=0.014 Score=30.73 Aligned_cols=29 Identities=45% Similarity=0.635 Sum_probs=24.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 28839999859999789999998459799
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.|+=++++.||.||||||.|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.14 E-value=0.015 Score=30.49 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.0084 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599997899999984597
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-.++++|+|++|||||+++|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.014 Score=30.63 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.08 E-value=0.016 Score=30.34 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++++|.||+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.08 E-value=0.017 Score=30.10 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.07 E-value=0.017 Score=30.19 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099997679998446996461997
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.07 E-value=0.013 Score=30.81 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.022 Score=29.39 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.02 Score=29.64 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.014 Score=30.63 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.|+||||+|||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.90 E-value=0.019 Score=29.86 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.86 E-value=0.06 Score=26.37 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=21.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 53030567828839999859999789999998459
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 168 iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.+|.... .-.|.=+++.|+||+||||+...|..+
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLL-EVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEE-EETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEE-EECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1789999-999999999818999989999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.84 E-value=0.016 Score=30.35 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.016 Score=30.28 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999789999998459799
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.+.+.+|-|+.||||||+++.|+..+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9988999878887799999999999735
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.77 E-value=0.021 Score=29.51 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.++|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.67 E-value=0.0087 Score=32.12 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999789999998459799
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
-+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.017 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1880999976799984469964619
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
...-.+||.|++|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9832897438999989999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.023 Score=29.20 Aligned_cols=23 Identities=48% Similarity=0.823 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++-||||+||||+.++++.++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.54 E-value=0.018 Score=29.95 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-+||+|.++||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.50 E-value=0.023 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.++.|+|++||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=0.029 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999789999998459799
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.|.+.++-|+.||||||+.+.|+..+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.44 E-value=0.025 Score=28.94 Aligned_cols=26 Identities=42% Similarity=0.511 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 18809999767999844699646199
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++|-.+.|+|++||||||.-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.012 Score=31.23 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88099997679998446996461997
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.022 Score=29.40 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|.|++|+|||||+..++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.28 E-value=0.035 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
|.-.+.+.||+|+|||.|.+.|++.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8863888779985088999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.27 E-value=0.035 Score=28.02 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=18.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+..++++||+|+||||.+-=||..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.25 E-value=0.03 Score=28.48 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=27.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 88099997679998446996461997-787078999996
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRK-TTGYVTGNITIS 889 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~I~i~ 889 (1412)
..-.++|.|+.|||||||++.|.... ..|.--|-|.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.17 E-value=0.033 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.++|+|..+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.023 Score=29.25 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.12 E-value=0.031 Score=28.35 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999978999999845
Q 000576 181 MTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG 201 (1412)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.11 E-value=0.066 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=19.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567828839999859999789999998459
Q 000576 173 SGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 173 s~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
+...-.|.-+++.|+||+||||+...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.032 Score=28.28 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.07 E-value=0.028 Score=28.67 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.06 E-value=0.031 Score=28.33 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++.||||+||||+.++++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.99 E-value=0.03 Score=28.42 Aligned_cols=22 Identities=55% Similarity=0.646 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.95 E-value=0.023 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.5
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 077771880999976799984469964619
Q 000576 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 846 is~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+.|-+++|+++.|.|++|+|||+|..-++-
T Consensus 27 l~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 079862885999991799998999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.91 E-value=0.062 Score=26.28 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|-|.+|||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.89 E-value=0.019 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+..+.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.034 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099997679998446996461997
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-..+.|+||+||||||+-+.|+.+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.87 E-value=0.024 Score=29.12 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
++.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.87 E-value=0.033 Score=28.14 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.85 E-value=0.033 Score=28.17 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.++.++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.038 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1880999976799984469964619
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+.-+++.++|++||||||+.+-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.024 Score=29.07 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=25.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 77771880999976799984469964619
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
.|-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.80 E-value=0.021 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=27.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99998599997899999984597999970009999882378767541089976788768
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHI 239 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 239 (1412)
+++|.|++||||||+.+.|...+... | -.++.++|++-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----G---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----T---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C---------------CCEEEEECCCCCC
T ss_conf 99998999780999999999997156----9---------------9769994777875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.78 E-value=0.028 Score=28.68 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.71 E-value=0.038 Score=27.73 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.70 E-value=0.057 Score=26.53 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99998599997899999984597999970009999882378767541089976
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYIS 233 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~ 233 (1412)
-++|+|-|.+|||||+++|++--. ....++.+...|+--+..|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~---------~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI---------EAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC---------CCCCCCCCCCCCCEEEEECC
T ss_conf 488889999988999999977997---------41369988877845899643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.63 E-value=0.053 Score=26.73 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999789999998459799
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.|.++++-|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=0.055 Score=26.66 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 8839999859999789999998459799997000999988
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNG 217 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG 217 (1412)
|....+++||+|+|||.|.+.||..+.. --+.++.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~-----~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC-----CEEEECC
T ss_conf 7658999778750069999999863367-----7067415
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.048 Score=27.07 Aligned_cols=52 Identities=25% Similarity=0.465 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 99998599997899999984597999970009999882378767541089976788768999999999976
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDSSLRLYGRVTYNGHNMDEFVPQRTAAYISQHDVHIGEMTVRETLAFS 251 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrEtl~f~ 251 (1412)
+++|-|++|||||||...|.-.+... .| ....++.++.+|-+. |-.|-...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~---t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL---THEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC---CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC---CHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------786067635677778---889999985
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.53 E-value=0.038 Score=27.77 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.53 E-value=0.041 Score=27.51 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|.|.+|||||+++|.|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.52 E-value=0.028 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.49 E-value=0.059 Score=26.41 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999978999999845979
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
....+++||+|+||||.+--||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.46 E-value=0.038 Score=27.75 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+||.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.041 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.45 E-value=0.054 Score=26.69 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++|.+.+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.45 E-value=0.033 Score=28.18 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099997679998446996461997
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
...+.|.||+|+|||||.++|++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9799988979988999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.42 E-value=0.035 Score=27.99 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997899999984597
Q 000576 182 TLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
+++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.34 E-value=0.032 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.|+|++||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.31 E-value=0.036 Score=27.92 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997679998446996461997
Q 000576 856 TALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+.|+|++||||||+-+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.049 Score=26.96 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.31 E-value=0.086 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=24.3
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 53030567828839999859999789999998459
Q 000576 168 ILKGVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 168 iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.+|. +.....|.=+++.|+||+||||+...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.30 E-value=0.048 Score=27.05 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=28.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 188099997679998446996461997787078999996930
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRKTTGYVTGNITISGYP 892 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~I~i~G~~ 892 (1412)
+.|.++-+.|.|||||||+.+.|+.+.......-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.22 E-value=0.17 Score=23.21 Aligned_cols=24 Identities=42% Similarity=0.386 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999767999844699646199
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
..++.++||+|+||||.+--||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=0.037 Score=27.78 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|.|++||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.20 E-value=0.051 Score=26.84 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 880999976799984469964619977
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
+.-.++++|.+|+|||||++.|.+...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 857999999999898999999966888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.19 E-value=0.043 Score=27.39 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=21.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 718809999767999844699646199
Q 000576 850 FRPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 850 i~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+|+. .+||+|..+||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.044 Score=27.30 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.16 E-value=0.056 Score=26.59 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=16.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6782883999985999978999999845
Q 000576 174 GIIRPGRMTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 174 ~~i~pG~~~~ilGp~GSGKSTLL~~LaG 201 (1412)
|=++.|+++.+.||+|||||||+..++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.14 E-value=0.051 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-.++|-|..||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.12 E-value=0.0089 Score=32.04 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.12 E-value=0.051 Score=26.89 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.++|+|.-+||||||+++|+|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.13 Score=24.12 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.07 Score=25.93 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++++|.+|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.047 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.03 E-value=0.22 Score=22.52 Aligned_cols=29 Identities=48% Similarity=0.744 Sum_probs=16.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67828839999859999789999998459
Q 000576 174 GIIRPGRMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 174 ~~i~pG~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
|=++.|++|.+-||+|||||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.01 E-value=0.034 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 18809999767999844699646199
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.+.++.|+||+||||||+-+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.05 Score=26.93 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.049 Score=27.01 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.|+||+||||||.-+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.85 E-value=0.074 Score=25.77 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=25.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7771880999976799984469964619
Q 000576 848 GAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 848 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
|-++.|.++-+.|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.047 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997899999984597
Q 000576 182 TLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
++++|++|+|||||++.+.+.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.80 E-value=0.062 Score=26.30 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599997899999984597
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
+-...+++||+|+||||.+--||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.80 E-value=0.044 Score=27.32 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
|+.-+.+.||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.79 E-value=0.045 Score=27.22 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997679998446996461997
Q 000576 856 TALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+.|+|++||||||+-+.||.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.78 E-value=0.062 Score=26.31 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997899999984
Q 000576 181 MTLLLGPPASGKTTLLLALA 200 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~La 200 (1412)
+++|.|++||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.07 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.60 E-value=0.065 Score=26.13 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=17.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599997899999984597
Q 000576 179 GRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 179 G~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-..++++||+|+||||.+-=||-++
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999999899999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.59 E-value=0.1 Score=24.82 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=26.8
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 400307777188099997679998446996461997
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 842 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+|..... -.|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLE-VFGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 17899999-999999998189999899999999859
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.071 Score=25.89 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999978999999845
Q 000576 181 MTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG 201 (1412)
+++|.|++||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.55 E-value=0.043 Score=27.40 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 7777188099997679998446996461
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~L~ 874 (1412)
.|-+.+|+++.|.|++|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.53 E-value=0.059 Score=26.44 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.50 E-value=0.011 Score=31.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|.+++|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.059 Score=26.44 Aligned_cols=26 Identities=42% Similarity=0.500 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 18809999767999844699646199
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.067 Score=26.06 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
..+.|+||.++||||||+.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999889999979999999809987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.42 E-value=0.059 Score=26.44 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.|+|++||||||+-+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.06 Score=26.39 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.072 Score=25.86 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.06 Score=26.37 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997899999984597
Q 000576 182 TLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
++++|.+|+|||||++.+.+.-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.057 Score=26.55 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.33 E-value=0.058 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+||+|.+.+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.067 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999976799984469964619977
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
+..++|-|+.||||||+++.|+.+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.31 E-value=0.041 Score=27.54 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-.++++|.+|+|||||++.+.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989999999996487
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.30 E-value=0.057 Score=26.52 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
++||.|.+||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.063 Score=26.22 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.06 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.069 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-++++|.+|+|||||++.+.+.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.048 Score=27.02 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 7777188099997679998446996461
Q 000576 847 SGAFRPGVLTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 847 s~~i~pG~~~ai~G~sGaGKTTLl~~L~ 874 (1412)
.|-+.+|.++.|.|++|+|||+|..-++
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6997689799998899887889999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.19 E-value=0.032 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997809999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.18 E-value=0.049 Score=26.98 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=75.5
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 07777188099997679998446996461997-78707899999693078101121577861588889998999999999
Q 000576 846 VSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK-TTGYVTGNITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLLYS 924 (1412)
Q Consensus 846 is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~I~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 924 (1412)
+.|-+.+|.++.|.|++|+|||+|..-++... ..+. ...|+.- ..+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------4411212------67999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHH
Q ss_conf 87207999998899999999999929920101002799887779888878999999-960996899959999---99999
Q 000576 925 AWLRLSPEVDSKTRKMFIEEVMELVELNLLRQALVGLPGVNGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDAR 1000 (1412)
Q Consensus 925 a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~-L~~~p~il~lDEPTs---gLD~~ 1000 (1412)
..+ ..+ . ++. ...+.....+.. .......+. .-.|... --.+|++++.|--+. +.+..
T Consensus 74 ~~~--~~~--~-------~~~-~~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSW--GMD--F-------EEM-ERQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTT--SCC--H-------HHH-HHTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHC--CCC--H-------HHH-HHCCCEEEEEEE-----CCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 982--998--6-------998-545861799730-----001017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHHCCEEEEE
Q ss_conf 9999999999998-5799899995588---------589998645176881
Q 000576 1001 AAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLLK 1041 (1412)
Q Consensus 1001 ta~~i~~~l~~~~-~~g~Tvi~t~Hqp---------s~~i~~~fD~llll~ 1041 (1412)
.....+..+.+.+ +.+.+++++.|.. +..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.18 E-value=0.096 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=26.6
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 400307777188099997679998446996461997
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 842 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+|. +...-.|.-+.++|+||+|||||...|..+-
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899-9999999999998089999899999999859
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.13 E-value=0.049 Score=26.99 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+++|-|+.||||||+++.|..++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.11 E-value=0.048 Score=27.05 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.1 Score=24.79 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.08 E-value=0.06 Score=26.40 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997679998446996461997
Q 000576 856 TALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.074 Score=25.76 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.96 E-value=0.065 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.96 E-value=0.1 Score=24.74 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=21.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82883999985999978999999845979
Q 000576 176 IRPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 176 i~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+||.++++-|+=|||||||.+.++..+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.92 E-value=0.086 Score=25.30 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999978999999845979
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
...+++||+|+||||.+--||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.91 E-value=0.071 Score=25.90 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|+|++||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.068 Score=26.03 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.068 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.67 E-value=0.057 Score=26.53 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-++++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.60 E-value=0.07 Score=25.91 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599997899999984597
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-+++|-|.-||||||||+-+....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.53 E-value=0.068 Score=26.02 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.1 Score=24.83 Aligned_cols=35 Identities=37% Similarity=0.668 Sum_probs=27.3
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 54003077771880999976799984469964619977
Q 000576 841 VLLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 841 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
.+|+.++. |=..++|+|+.++|||||||.|+|...
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99970799---879999889999979999999809987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.43 E-value=0.064 Score=26.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.40 E-value=0.084 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+..+.|.|++|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.39 E-value=0.088 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.35 E-value=0.094 Score=25.05 Aligned_cols=49 Identities=6% Similarity=0.160 Sum_probs=30.6
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 2898376984798899-9899999999999999852985999984592369
Q 000576 340 VGPAQAFFMDEISTGL-DSSTTFQIVNSLRQFIHILRGTTLISLLQPAPEA 389 (1412)
Q Consensus 340 ~~~~~vlllDEptsgL-Ds~t~~~i~~~L~~~a~~~~~t~ii~l~q~~~e~ 389 (1412)
+...+++++||.-.=. +..+...+...+-... ..++.++++-..++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHC
T ss_conf 762130101126550586577889999999876-31663899548751001
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.27 E-value=0.099 Score=24.91 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+..++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.25 E-value=0.091 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999976799984469964619
Q 000576 854 VLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
-++||-|++|||||||-+.|..
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.24 E-value=0.053 Score=26.76 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.21 E-value=0.088 Score=25.25 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.078 Score=25.61 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999789999998459
Q 000576 180 RMTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
+.++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.17 E-value=0.096 Score=24.99 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.085 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.11 E-value=0.082 Score=25.44 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.++|++||||||.-+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.07 E-value=0.13 Score=24.15 Aligned_cols=34 Identities=26% Similarity=0.162 Sum_probs=26.9
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 40030777718809999767999844699646199
Q 000576 842 LLNSVSGAFRPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 842 iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-+|. +...-.|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.04 E-value=0.18 Score=23.15 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
|.=-++++|+..+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.04 E-value=0.092 Score=25.10 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.|+|++||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.03 E-value=0.093 Score=25.10 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|+|++||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.1 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.96 E-value=0.11 Score=24.67 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.+.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.94 E-value=0.08 Score=25.51 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.091 Score=25.14 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997899999984597
Q 000576 181 MTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
-++|+|.+|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.90 E-value=0.071 Score=25.89 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999985999978999999
Q 000576 181 MTLLLGPPASGKTTLLLA 198 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~ 198 (1412)
-++|.|+|||||||.|-.
T Consensus 16 ~~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHH
T ss_conf 989996288438999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.89 E-value=0.099 Score=24.90 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|...||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.1 Score=24.78 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.81 E-value=0.1 Score=24.85 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.++++|...||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.19 Score=22.98 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.75 E-value=0.1 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.68 E-value=0.078 Score=25.60 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=18.9
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 5315303056782883999985999978999999
Q 000576 165 HITILKGVSGIIRPGRMTLLLGPPASGKTTLLLA 198 (1412)
Q Consensus 165 ~~~iL~~vs~~i~pG~~~~ilGp~GSGKSTLL~~ 198 (1412)
+..++++.. |. ++|.|+|||||||.|-.
T Consensus 16 Q~~~v~~~~-----g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 16 QQEAVRTTE-----GP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHHCCS-----SC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHHCCC-----CC-EEEEECCCCCHHHHHHH
T ss_conf 999982999-----99-89995298668999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.1 Score=24.87 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.069 Score=25.95 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.66 E-value=0.13 Score=24.15 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=13.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 71880999976799984469964619
Q 000576 850 FRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 850 i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+-.|+..+|.|++|+|||||+..++.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 45787556867999887899999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.61 E-value=0.13 Score=24.05 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=17.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHH
Q ss_conf 8839999859999789999998
Q 000576 178 PGRMTLLLGPPASGKTTLLLAL 199 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~L 199 (1412)
.+.++.|.||||+||||++..+
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHHH
T ss_conf 0885999768988752169999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=0.12 Score=24.43 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.50 E-value=0.091 Score=25.13 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999767999844699646199
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
--.++++|.+|+|||||++.+.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.14 Score=23.79 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7771880999976799984469964619
Q 000576 848 GAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 848 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
|-+.+|.++-+.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.11 Score=24.46 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999978999999845
Q 000576 182 TLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG 201 (1412)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.38 E-value=0.12 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.12 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.36 E-value=0.12 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.13 Score=24.16 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.31 E-value=0.1 Score=24.80 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.30 E-value=0.11 Score=24.48 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.|+|+.||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.081 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.24 E-value=0.098 Score=24.93 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.23 E-value=0.12 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.12 Score=24.28 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.08 E-value=0.12 Score=24.23 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88099997679998446996461997
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.|.++++-|..||||||+.+.|+.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76899998998886999999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.01 E-value=0.11 Score=24.48 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=25.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 188099997679998446996461997-787078999996
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRK-TTGYVTGNITIS 889 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~I~i~ 889 (1412)
++-..++++||+|+||||.+-=||.+. ..+..-+=|..|
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~D 48 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9998999989999988999999999999779906999601
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.90 E-value=0.13 Score=24.00 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.099 Score=24.90 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.81 E-value=0.12 Score=24.39 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 898799997388999999850
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.73 E-value=0.12 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.13 Score=23.99 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.|..+++-|+.||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.68 E-value=0.17 Score=23.29 Aligned_cols=20 Identities=50% Similarity=0.541 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997899999984
Q 000576 181 MTLLLGPPASGKTTLLLALA 200 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~La 200 (1412)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=0.16 Score=23.45 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.12 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-+++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.59 E-value=0.2 Score=22.79 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7188099997679998446996461997
Q 000576 850 FRPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 850 i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+|.--+|++|.-.+|||||++.|.+..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.11 Score=24.68 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.51 E-value=0.15 Score=23.59 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997899999984
Q 000576 181 MTLLLGPPASGKTTLLLALA 200 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~La 200 (1412)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.49 E-value=0.14 Score=23.80 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
....++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.47 E-value=0.076 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999767999844699646199
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+-.+||+|-+.+|||||+++|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=0.17 Score=23.32 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 18809999767999844699646199
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+|...+.++||+|.|||.|.+.||..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.13 Score=24.03 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.29 E-value=0.19 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9997679998446996461
Q 000576 856 TALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~ 874 (1412)
+||+|..|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999589899899999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.13 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.15 Score=23.64 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999789999998459799
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
...+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.15 E-value=0.17 Score=23.34 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999789999998
Q 000576 182 TLLLGPPASGKTTLLLAL 199 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~L 199 (1412)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.12 E-value=0.18 Score=23.15 Aligned_cols=21 Identities=38% Similarity=0.278 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999978999999845
Q 000576 181 MTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG 201 (1412)
-.+++|++++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.16 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.08 E-value=0.18 Score=23.07 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=0.14 Score=23.85 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++|+|.+|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.15 Score=23.63 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.02 E-value=0.18 Score=23.04 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=24.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 771880999976799984469964619
Q 000576 849 AFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 849 ~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
..+||.++.|-|.=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 579982999966877658899999876
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.00 E-value=0.16 Score=23.47 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8809999767999844699646199
Q 000576 852 PGVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 852 pG~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
|-.-+.+.||+|+|||++.++|+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.97 E-value=0.11 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.15 Score=23.63 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.85 E-value=0.11 Score=24.52 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-+.++||||+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.84 E-value=0.25 Score=22.15 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999978999999845979
Q 000576 178 PGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 178 pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+-.++|+|-|.+|||||+|+|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.17 Score=23.24 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.73 E-value=0.13 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-+++++|.+|+|||||++.+.+.
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 28999998990889999999719
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.68 E-value=0.24 Score=22.29 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997679998446996461
Q 000576 855 LTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~ 874 (1412)
++||.|.-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.67 E-value=0.22 Score=22.52 Aligned_cols=28 Identities=46% Similarity=0.560 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+|....+++||+|+|||.+.+.|+-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.66 E-value=0.14 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.64 E-value=0.15 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.15 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.58 E-value=0.17 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.55 E-value=0.15 Score=23.57 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999767999844699646199
Q 000576 853 GVLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 853 G~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-..++++||+|+||||.+-=||.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979999899999989999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.42 E-value=0.12 Score=24.28 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+.+.||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.38 E-value=0.13 Score=24.01 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCH----------HHHHHHHHHHHHH---H-HCCCEEEEEECCCCHHHHHHHC
Q ss_conf 888789999999609968999599999999----------9999999999999---8-5799899995588589998645
Q 000576 970 EQRKRLTIAVELVANPSIIFMDEPTSGLDA----------RAAAIVMRTVRNT---V-DTGRTVVCTIHQPSIDIFEAFD 1035 (1412)
Q Consensus 970 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~----------~ta~~i~~~l~~~---~-~~g~Tvi~t~Hqps~~i~~~fD 1035 (1412)
.++-+-.+..+-...|.|+++||.-.=+.. .....+...+..+ . +.+.-||+|++.|.. .|
T Consensus 86 ~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld 160 (265)
T d1r7ra3 86 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----ID 160 (265)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TS
T ss_pred HHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CC
T ss_conf 8999999999986398435687546324557876788737999999999999628677799899991799222-----79
Q ss_pred CEEEE-ECCCEEEEECCCCCC
Q ss_conf 17688-159499998599989
Q 000576 1036 ELFLL-KRGGQEIYVGPLGRH 1055 (1412)
Q Consensus 1036 ~llll-~~gG~~vy~G~~g~~ 1055 (1412)
.-++= .+=.+.++.+++.+.
T Consensus 161 ~al~r~gRf~~~i~~~~p~~~ 181 (265)
T d1r7ra3 161 PAILRPGRLDQLIYIPLPDEK 181 (265)
T ss_dssp CGGGSSTTSEEEEECCCCCCH
T ss_pred HHHHCCCCCCEEEEECCHHHH
T ss_conf 978078776479995660788
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.33 E-value=0.19 Score=22.91 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1880999976799984469964619
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+|---++++|..++|||||++.|..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971999994789849999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.33 E-value=0.18 Score=23.06 Aligned_cols=23 Identities=52% Similarity=0.755 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.19 Score=22.96 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=0.27 Score=21.93 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-.+++||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.20 E-value=0.2 Score=22.85 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++|+|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.19 E-value=0.17 Score=23.37 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-+|++|.-++|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.16 E-value=0.18 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
-.+.++|.+|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.15 E-value=0.22 Score=22.51 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-.+++|.+.+|||||++.|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.05 E-value=0.22 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099997679998446996461997
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
..+.|.||+|.||||+++.++...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 816888989998999999999997
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.19 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+++++|.+|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.87 E-value=0.18 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999767999844699646199
Q 000576 856 TALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 856 ~ai~G~sGaGKTTLl~~L~gr 876 (1412)
..+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.19 Score=22.98 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.67 E-value=0.22 Score=22.52 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.65 E-value=0.17 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-.+||+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.63 E-value=0.22 Score=22.47 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=41.3
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHHHH----H-CCCEEEEEECCCCHHHHHHHCCEEEEEC--CCEEEE
Q ss_conf 609968999599999999999------99999999998----5-7998999955885899986451768815--949999
Q 000576 982 VANPSIIFMDEPTSGLDARAA------AIVMRTVRNTV----D-TGRTVVCTIHQPSIDIFEAFDELFLLKR--GGQEIY 1048 (1412)
Q Consensus 982 ~~~p~il~lDEPTsgLD~~ta------~~i~~~l~~~~----~-~g~Tvi~t~Hqps~~i~~~fD~llll~~--gG~~vy 1048 (1412)
...|.|||+||.=+=...+.. ..+...+.... . .+.-||+|+++|.. .|.-++ .. =.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred ECCCCCCCHHHHHHHHCC
Q ss_conf 859998903798755209
Q 000576 1049 VGPLGRHSSHLIKYFEGN 1066 (1412)
Q Consensus 1049 ~G~~g~~~~~~~~yF~~~ 1066 (1412)
.+++.. ..-...++..
T Consensus 169 ~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCCH--HHHHHHHHHT
T ss_pred CCCCCH--HHHHHHHHHH
T ss_conf 899998--8999873220
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.61 E-value=0.22 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=24.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC---CCCCEEEEEEEECC
Q ss_conf 09999767999844699646199---77870789999969
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR---KTTGYVTGNITISG 890 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr---~~~~~~~G~I~i~G 890 (1412)
-++.++|.+|+|||||++-+..- .|.|...-.+.+++
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~ 46 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDK 46 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECC
T ss_conf 7799998999988999998950982788886789999776
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.21 Score=22.72 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=25.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78288399998599997899999984597
Q 000576 175 IIRPGRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 175 ~i~pG~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.17 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.49 E-value=0.23 Score=22.40 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 099997679998446996461
Q 000576 854 VLTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~ 874 (1412)
-++.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=0.3 Score=21.60 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999789999998459799
Q 000576 180 RMTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
...++-||||+||||+..+++..+..
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 05988889987589999999998468
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.35 E-value=0.31 Score=21.55 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
-.++.||+|+||||+...++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.29 E-value=0.23 Score=22.45 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
++.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.21 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.20 E-value=0.2 Score=22.86 Aligned_cols=20 Identities=50% Similarity=0.723 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997679998446996461
Q 000576 855 LTALMGVTGAGKTTLMDVLA 874 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~ 874 (1412)
-++|+|..|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.23 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.00 E-value=0.25 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.99 E-value=0.3 Score=21.64 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1880999976799984469964619977
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRKT 878 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 878 (1412)
..+-.++++|.+.+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.76 E-value=0.2 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 39999859999789999998---459799
Q 000576 180 RMTLLLGPPASGKTTLLLAL---AGKLDS 205 (1412)
Q Consensus 180 ~~~~ilGp~GSGKSTLL~~L---aG~l~~ 205 (1412)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 29999958989989999999996485340
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.27 Score=21.90 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999976799984469964619
Q 000576 855 LTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.53 E-value=0.23 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.47 E-value=0.31 Score=21.55 Aligned_cols=27 Identities=44% Similarity=0.658 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2883999985999978999999845979
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
+|+. .+.+||+|+|||-|.+.||..++
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8753-24418998637899999986443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.26 E-value=0.27 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.29 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.81 E-value=0.26 Score=21.99 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=39.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99689995999999999999999999999857998999955885899986451768815949999859998903798755
Q 000576 984 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYF 1063 (1412)
Q Consensus 984 ~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~g~~~~~~~~yF 1063 (1412)
+.+++++||.-. +...+...+...+.... ....++++.++.+. +... +.++ -+++.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-1067-----8877-77765313322--4567888
Q ss_pred HC
Q ss_conf 20
Q 000576 1064 EG 1065 (1412)
Q Consensus 1064 ~~ 1065 (1412)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
T ss_conf 77
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.75 E-value=0.29 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.70 E-value=0.42 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999789999998459799
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLDS 205 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~~ 205 (1412)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.38 E-value=0.37 Score=21.01 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
.+++|.+.+|||||+..|+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=0.28 Score=21.82 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
.+.|-|.-|||||||++-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.97 E-value=0.53 Score=19.90 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=15.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 782883999985999978999999845
Q 000576 175 IIRPGRMTLLLGPPASGKTTLLLALAG 201 (1412)
Q Consensus 175 ~i~pG~~~~ilGp~GSGKSTLL~~LaG 201 (1412)
.+-.|+-.+|.|++|+|||+|+.-++.
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 636788777667999898999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.91 E-value=0.32 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997679998446996461997
Q 000576 855 LTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.70 E-value=0.35 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999767999844699646199
Q 000576 854 VLTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 854 ~~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.60 E-value=0.41 Score=20.68 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++|+||.|||++...|+.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.47 E-value=0.36 Score=21.04 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
+++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.42 E-value=0.32 Score=21.41 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 968999599999999999999999999985799899-9955885899986451768815949999859998903798755
Q 000576 985 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYF 1063 (1412)
Q Consensus 985 p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi-~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~g~~~~~~~~yF 1063 (1412)
.+++++||.- .+.......+.+.+.+.. ..+++ ++.+++. .+... +.++ ...+.+-|+.. .++.++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-000237899998863112--0023201267087-75999-----9988-75401235652--0001102
Q ss_pred HCC
Q ss_conf 209
Q 000576 1064 EGN 1066 (1412)
Q Consensus 1064 ~~~ 1066 (1412)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.36 E-value=0.33 Score=21.29 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
++.++|.+|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.34 E-value=0.41 Score=20.70 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7771880999976799984469964619
Q 000576 848 GAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 848 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
|-+..|.++.+.|++|+|||||.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.91 E-value=0.34 Score=21.21 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=42.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99689995999999999999999999999857998999955885899986451768815949999859998903798755
Q 000576 984 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSSHLIKYF 1063 (1412)
Q Consensus 984 ~p~il~lDEPTsgLD~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~g~~~~~~~~yF 1063 (1412)
+.+++++||.-. |...+...+.+.+.... ....+|++++.+..-.-.+-+ + =..+.+-|+.. .++.++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~~l~s------R-~~~i~~~~~~~--~~~~~~l 199 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKS------Q-CLLIRCPAPSD--SEISTIL 199 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHT------T-SEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCCHHHHHHC------C-HHEEEECCCCH--HHHHHHH
T ss_conf 724999424333-45431112210022135-664300010211100254421------0-00243035330--4689999
Q ss_pred HCC
Q ss_conf 209
Q 000576 1064 EGN 1066 (1412)
Q Consensus 1064 ~~~ 1066 (1412)
+.+
T Consensus 200 ~~i 202 (252)
T d1sxje2 200 SDV 202 (252)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.82 E-value=0.42 Score=20.62 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999789999998459
Q 000576 181 MTLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
-++++|.+|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.82 E-value=0.19 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999767999844699646199
Q 000576 855 LTALMGVTGAGKTTLMDVLAGR 876 (1412)
Q Consensus 855 ~~ai~G~sGaGKTTLl~~L~gr 876 (1412)
.+.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.37 E-value=0.45 Score=20.40 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1880999976799984469964619
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
+|.--+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.91 E-value=0.43 Score=20.52 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999978999999845979
Q 000576 182 TLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+++|+||.|||++...|+-++.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 76879999889999999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.77 E-value=0.4 Score=20.72 Aligned_cols=48 Identities=4% Similarity=0.051 Sum_probs=31.8
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 6099689995999999-99999999999999985799899995588589
Q 000576 982 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1029 (1412)
Q Consensus 982 ~~~p~il~lDEPTsgL-D~~ta~~i~~~l~~~~~~g~Tvi~t~Hqps~~ 1029 (1412)
+.+.+++++|+--.=. +......+...+....+.|+.+|+|...|..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.72 E-value=0.45 Score=20.39 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999978999999845979
Q 000576 181 MTLLLGPPASGKTTLLLALAGKLD 204 (1412)
Q Consensus 181 ~~~ilGp~GSGKSTLL~~LaG~l~ 204 (1412)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.70 E-value=0.54 Score=19.86 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=22.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 188099997679998446996461997
Q 000576 851 RPGVLTALMGVTGAGKTTLMDVLAGRK 877 (1412)
Q Consensus 851 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 877 (1412)
+|.....++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
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| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.64 E-value=0.28 Score=21.78 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 288399998599997899999984597
Q 000576 177 RPGRMTLLLGPPASGKTTLLLALAGKL 203 (1412)
Q Consensus 177 ~pG~~~~ilGp~GSGKSTLL~~LaG~l 203 (1412)
+.-....+.||+++|||+|+++|...+
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 761799998589887789999999983
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.16 E-value=0.6 Score=19.57 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999789999998459
Q 000576 182 TLLLGPPASGKTTLLLALAGK 202 (1412)
Q Consensus 182 ~~ilGp~GSGKSTLL~~LaG~ 202 (1412)
++++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.10 E-value=0.68 Score=19.18 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7771880999976799984469964619
Q 000576 848 GAFRPGVLTALMGVTGAGKTTLMDVLAG 875 (1412)
Q Consensus 848 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 875 (1412)
..+-.|+..+|.|.+|.|||+|+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|