Citrus Sinensis ID: 000589
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1403 | 2.2.26 [Sep-21-2011] | |||||||
| F4J5S1 | 1407 | Clustered mitochondria pr | yes | no | 0.927 | 0.924 | 0.717 | 0.0 | |
| B0W2S0 | 1377 | Clustered mitochondria pr | N/A | no | 0.784 | 0.799 | 0.295 | 1e-154 | |
| Q0IHW8 | 1296 | Clustered mitochondria pr | yes | no | 0.779 | 0.843 | 0.289 | 1e-151 | |
| Q17N71 | 1442 | Clustered mitochondria pr | N/A | no | 0.751 | 0.731 | 0.299 | 1e-151 | |
| B3MIW0 | 1450 | Protein clueless OS=Droso | N/A | no | 0.764 | 0.74 | 0.298 | 1e-149 | |
| B4P6P7 | 1451 | Protein clueless OS=Droso | N/A | no | 0.762 | 0.737 | 0.297 | 1e-148 | |
| Q291J5 | 1435 | Protein clueless OS=Droso | yes | no | 0.761 | 0.744 | 0.292 | 1e-148 | |
| B4GAM1 | 1435 | Protein clueless OS=Droso | N/A | no | 0.777 | 0.760 | 0.292 | 1e-148 | |
| B4KT50 | 1487 | Protein clueless OS=Droso | N/A | no | 0.761 | 0.718 | 0.300 | 1e-148 | |
| B4JW99 | 1494 | Protein clueless OS=Droso | N/A | no | 0.761 | 0.714 | 0.295 | 1e-147 |
| >sp|F4J5S1|CLU_ARATH Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1 | Back alignment and function desciption |
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Score = 1917 bits (4967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1369 (71%), Positives = 1125/1369 (82%), Gaps = 68/1369 (4%)
Query: 50 GVPAVSE--STIAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVM 107
VP +E TI +AD ES N+ +PKQGEL LYPV+VKTQS K+ELQLNPGDSVM
Sbjct: 72 AVPEANEVAPTIPKADESESQVENNDAQPKQGELRLYPVSVKTQSGGKMELQLNPGDSVM 131
Query: 108 DIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDD 167
DIRQFLLDAPETC+FTCY+L+L KDG THHLEDYNEISEVADIT GGC+LEMVAALYDD
Sbjct: 132 DIRQFLLDAPETCYFTCYELLLRNKDGETHHLEDYNEISEVADITIGGCSLEMVAALYDD 191
Query: 168 RSIRAHVHRTRDLLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMED 227
RSIRAHVHR RDLLSLSTLH+SLST+LALQY+ A +KV + GD K++VPEL+ LGFMED
Sbjct: 192 RSIRAHVHRARDLLSLSTLHSSLSTTLALQYDAALNKVQNPGDKPKSDVPELECLGFMED 251
Query: 228 VSGSLGKLLSSSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTK 287
V GSL KL++S+++EI+ VE+IVFSSFNP PSHRRLVGDLIYLDVVTLEG+KYCITGTTK
Sbjct: 252 VPGSLKKLINSTSEEIRSVENIVFSSFNPPPSHRRLVGDLIYLDVVTLEGNKYCITGTTK 311
Query: 288 MFYVNSSTGNVLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSL 347
FYVNSS+GN+LDPRPSK+ EA TLIGLLQK+SSKFKKAFRE++++KASAHPFENVQSL
Sbjct: 312 TFYVNSSSGNILDPRPSKSGFEAATLIGLLQKLSSKFKKAFREVMEKKASAHPFENVQSL 371
Query: 348 LPPNSWLGLYPVPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELL 403
LPP+SWL YPVPDHKRDAARAE+ALT+SYGSELIGMQRDWNEELQSCREFP QE +
Sbjct: 372 LPPHSWLRTYPVPDHKRDAARAEEALTISYGSELIGMQRDWNEELQSCREFPHTSPQERI 431
Query: 404 RR--------------AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNH 449
R A+NGAIGVISRCIPPINPTDPEC HMYVHNNIFFSFAVD+D+
Sbjct: 432 LRDRALYKVSSDFVDAALNGAIGVISRCIPPINPTDPECLHMYVHNNIFFSFAVDADIEQ 491
Query: 450 LSRKRASDIIS--INSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQ 507
LS+KR S+ ++ ++SS K S + D N +N +E+ L E+EQ
Sbjct: 492 LSKKRPSNQMTEKVSSSEKVSCTEGTCD-------NEEHNN--------CNEAPLVENEQ 536
Query: 508 ATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYG 567
ATYASANNDLKGTK YQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSD+LLYG
Sbjct: 537 ATYASANNDLKGTKLYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDALLYG 596
Query: 568 SVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYL 627
SVDNGKKI WNEDFH+KVLEAAK LH+KEH+V+D S VFKLAAPVECKGIVGSD+RHYL
Sbjct: 597 SVDNGKKICWNEDFHAKVLEAAKLLHIKEHSVIDASETVFKLAAPVECKGIVGSDNRHYL 656
Query: 628 LDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKP-EGEAIVNPDSSEA 686
LDLMRVTPRDANYTG SRFC++RPELIT+FCQ E+ EKSK ++K EG + S++
Sbjct: 657 LDLMRVTPRDANYTGPESRFCVLRPELITSFCQAESLEKSKFKTKADEGGDDSSNVSADT 716
Query: 687 SGIKES-ANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEF 745
S + ++ + E N + SD Q + + + T ++ + S ESS SCD I FNPN FT+F
Sbjct: 717 SKVGDALIDGEANGASNSD--QKSISDKQNTTAEDYAAGSSESSKSCDQIAFNPNVFTDF 774
Query: 746 KLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR 805
L G+Q+EIAADEENV+KVS YL DVVLPKFI+DLCTLEVSPMDGQTLTEALHAHG+N+R
Sbjct: 775 TLGGNQEEIAADEENVKKVSSYLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVR 834
Query: 806 YIGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQ 865
YIG+VA+G KHLPHLWDLC NEI VRSAKHILKD+LR+ EDHD+G A++H NCFFG+ Q
Sbjct: 835 YIGRVANGVKHLPHLWDLCLNEITVRSAKHILKDILRDIEDHDIGSAVSHFLNCFFGNYQ 894
Query: 866 AVRGKVTASNVQSRNQMKEH-AGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWS 924
GK +A++ ++NQ K A P + K + +++K SSYM V+S+ LWS
Sbjct: 895 TAGGKASANSSTAKNQKKFFGADQPITKKGQGRGKG---KASSKKSFSSYMMVDSNILWS 951
Query: 925 DLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNL 984
D++EFAK KY+FELPE +R KKVSV+RNLCQKVG+S+ ARKYDF+A TPFETSDIL+L
Sbjct: 952 DIQEFAKAKYEFELPELSRTTAKKVSVLRNLCQKVGVSIAARKYDFSANTPFETSDILDL 1011
Query: 985 QPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCR 1044
+PV+KHSVP+CSEAK+LVEMGKVQLAEG+LSE+YT FSEAFSILQQVTGPMHREVANCCR
Sbjct: 1012 RPVIKHSVPVCSEAKDLVEMGKVQLAEGMLSESYTFFSEAFSILQQVTGPMHREVANCCR 1071
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELAL++
Sbjct: 1072 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALQN 1131
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164
M RALLLL LSSGPDHPDVAATFINVAMMYQD+GKMDTALRYLQEALKKNERLLG EHIQ
Sbjct: 1132 MGRALLLLGLSSGPDHPDVAATFINVAMMYQDMGKMDTALRYLQEALKKNERLLGPEHIQ 1191
Query: 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQM 1224
TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG++DSRT+DS NWMKTFKMRELQM
Sbjct: 1192 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGDDDSRTRDSLNWMKTFKMRELQM 1251
Query: 1225 NVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGET 1284
QKQKGQA NAA+TQKAID+LKAHPDLIHAFQ AA G + N+LN+A+LGET
Sbjct: 1252 TAQKQKGQAANAANTQKAIDLLKAHPDLIHAFQNAAATGRT--------NALNSAVLGET 1303
Query: 1285 LPRGRGFDERAARAAAEVRKKAVAKGLLIRPH-GLPAQALPPLTQLLNIINSSGATPDAS 1343
PRGRGFDERAARAAAEVRKKA AKGLL+RP G+P QA+PPL+QL N+IN+ A+
Sbjct: 1304 QPRGRGFDERAARAAAEVRKKAAAKGLLVRPQGGVPVQAMPPLSQLQNMINT------AT 1357
Query: 1344 VSGATDDSKKEANGHSLAEPSDEKKDVSEPGR-EAQAPAGLGKGLGSLD 1391
VS E G + EKK+ SE G+ E APAGLG GL SLD
Sbjct: 1358 VSS-------EKGGENGEAKVQEKKESSENGKTENLAPAGLGAGLTSLD 1399
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Involved in proper cytoplasmic distribution of mitochondria. Arabidopsis thaliana (taxid: 3702) |
| >sp|B0W2S0|CLU_CULQU Clustered mitochondria protein homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 387/1309 (29%), Positives = 612/1309 (46%), Gaps = 208/1309 (15%)
Query: 30 SSEKDSNSPSESVIVDANANGVPAVSESTIAQADVQESDTANSADEPKQGELHLYPVTVK 89
S +K+ P E +V+ N + S+S +A + Q +T +D + TV+
Sbjct: 16 SKDKEPTPPKEQPLVNGNHDMNGHASDS-VAPTEQQNGETKKKSDSEVMEIIQDAGFTVQ 74
Query: 90 TQSN--EKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISE 147
S E L +Q++ + V +I Q L+D +TC TC+ L L DG T L+++ E+
Sbjct: 75 IMSPGVEPLSIQVSSMELVQEIHQLLMDREDTCHRTCFSLQL---DGVT--LDNFAELKN 129
Query: 148 VADITTGGCTLEMVAALYDDRSIRAHVHRTRDLL---------------SLSTLHASLST 192
V + G +++V Y R R HV RDLL SL+ LH +
Sbjct: 130 VEGLKEGS-VIKVVEEPYTMREARIHVRHVRDLLKSMDPADAYNGVDCSSLTFLHTITAG 188
Query: 193 SLALQYEMAQSKVSSSGDAAKTEVPELDGLGFME----DVSGSLGKLLSSSTQEIKCVES 248
+ K D+ PE G E + +GK Q +K + +
Sbjct: 189 DIL-------EKKKGRSDSVDCTPPEYIMPGAKERPLLPLQPGVGK---KGPQPLKVLTT 238
Query: 249 IVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANS 308
S++NP P R+L GDL+YL VVT+E ++ I+ + FY+N ST + +PRP +
Sbjct: 239 ---SAWNPPPGPRKLHGDLMYLYVVTMEDKRFHISACPRGFYINQSTDDTFEPRPDNPSY 295
Query: 309 EATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAAR 368
+LI LL +IS F++ F ++ ++ HPFE V + +W P DH DA R
Sbjct: 296 LCHSLIDLLSQISPTFRRCFAQMQKKRTQRHPFERVATPYQVYTWSA--PTLDHTIDAIR 353
Query: 369 AEDALT--LSYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------N 408
AED + L Y + G RDWNEELQ+ RE P+E LLR RAI
Sbjct: 354 AEDTFSSKLGYEEHIPGQTRDWNEELQTTRELPRETLPERLLRERAIFKVHSDFVTAATR 413
Query: 409 GAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKAS 468
GA+ VI + INP + M++ NNIFFS D +H
Sbjct: 414 GAMAVIDGNVMAINPGEDAKMQMFIWNNIFFSLGFDVR-DH------------------- 453
Query: 469 HNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADV 528
Y E G++ A + + NDL G + Y DV
Sbjct: 454 -----------YKELGGDA--------------------AAFVAPRNDLHGVRVYSAVDV 482
Query: 529 PGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEA 588
GL+ L +IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + +E + + A
Sbjct: 483 EGLYTLGTVVIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHEKYLELLNNA 542
Query: 589 AKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS--- 645
K L + H+VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 543 GKHLKIYPHSVLNDDEEEIELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLDEELS 602
Query: 646 --------------RFCIMRPELITAFC----------------QVEAAEKSKGQSKPEG 675
+ +R EL+ AF Q+ ++ + Q P+
Sbjct: 603 KDCKAFGFPIEHKHKLSCLRQELLEAFIESRYLLFIKHAAFQLQQLNTNKRQQKQDTPKE 662
Query: 676 EA-IVNPDSSEAS--------------------GIKESANHEVNVTATSDVSQDATKEGK 714
E + P + E S G+ + E S +S D E +
Sbjct: 663 ETKAIEPAAKEDSANNNKEEPAAKKGEPKAATGGVPKVETEEAKKLMESLLSSDEKNESR 722
Query: 715 VETVQECRSASEESSDSCDGILFNPNAFT----EFKLAGSQDEIAADEENVRKVSLYLAD 770
E V+ A D I FNP+ ++ + + I ++ V+ + +L
Sbjct: 723 -EVVKRACEAVGSLKDYEFDIRFNPDVYSPGIQHVDNPNAANSIKKQKQLVKDAAEFLVK 781
Query: 771 VVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVAD---GTKHLPHLWDLCSNE 827
+P F+ D +PMDG TLTE LH+ GIN+RY+GKVA+ K L +L + +E
Sbjct: 782 HQIPSFVHDCLDHTAAPMDGSTLTETLHSRGINVRYLGKVANLLAKIKQLEYLHTIAVSE 841
Query: 828 IVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAG 887
+++R+AKHI ++ TE + AI+H NCF TA++V S + + +G
Sbjct: 842 LIIRAAKHIFVTYMQNTEMMSMAAAISHFLNCFL---------TTATSVSSESDVLTKSG 892
Query: 888 HPSSSKSSRSQAR---------WKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFEL 938
SS K R Q + K + ++ + + S +LW+ +++ K + ++L
Sbjct: 893 --SSGKQQRKQNKRTAAGGGKGGKSSFQCTQDNNEWQLLTSKSLWAQIQQELKSYWDYDL 950
Query: 939 ----------PEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATP--FETSDILNLQP 986
P ++K+S++R C K G+ + R+Y+F F +DI+N+ P
Sbjct: 951 LPAGTVDSADPVVTHNHLQKISLLRAFCLKTGVQILLREYNFETKNKPTFNENDIVNVFP 1010
Query: 987 VVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYL 1046
VVKH P S+A N G+ ++ +G + Y L SEA ++L V G MH E A C R L
Sbjct: 1011 VVKHINPRASDAYNFYTTGQTKIQQGYFKDGYDLISEALNLLNNVYGAMHPENAQCLRML 1070
Query: 1047 AMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMS 1106
A + Y GD A+ Q + ++++ER G+DHP T Y +AL+ +Q AL+ +
Sbjct: 1071 ARLSYIMGDPQEALAIQQRAVLMSERVNGIDHPYTIAEYAPLALYCFANSQISTALKLLY 1130
Query: 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166
RA L ++ G +HPD+A N++++ +G+ + +LR+L+ AL N + GE+ ++ A
Sbjct: 1131 RARYLATIVCGDNHPDIALLDSNISLILHAVGEYELSLRFLEHALALNIKYYGEKSLKVA 1190
Query: 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215
V YH +A +CMG F+ + +EK+TY I +QLGE +T++S ++
Sbjct: 1191 VSYHLVARTQSCMGDFRSALNNEKETYAIYKQQLGEAHEKTQESSECLR 1239
|
Culex quinquefasciatus (taxid: 7176) |
| >sp|Q0IHW8|CLU_XENTR Clustered mitochondria protein homolog OS=Xenopus tropicalis GN=cluh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 370/1278 (28%), Positives = 612/1278 (47%), Gaps = 185/1278 (14%)
Query: 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYN 143
+ V V+ E +Q++P + V +I Q L+D +TC TC+ L L DG+ L+++
Sbjct: 45 FTVKVQVPGVETFSIQVSPQEMVQEIHQVLMDREDTCHRTCFSLQL---DGNV--LDNFA 99
Query: 144 EISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLSLSTLHASLSTSLALQ----YE 199
E+ + G L++V Y R R HV RDLL SL S A
Sbjct: 100 ELKTIEGFQEGS-VLKVVEEPYTVREARIHVRHIRDLLK------SLDPSDAFNGVDCNS 152
Query: 200 MAQSKVSSSGDAAKT--------EVPELDGLGFMEDVSGSLGKLLS------SSTQEIKC 245
++ V + GD + E+ ++D + GS + LS + ++C
Sbjct: 153 LSFLSVFTDGDLGDSGKKKKKGNELEQIDCTPPEYILPGSKERPLSPLQPQNKDWKPLQC 212
Query: 246 VESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSK 305
++ S +NP P +R++ GDL+YL V+T+E IT +T+ FY+N ST +P+P+
Sbjct: 213 LKVFTMSGWNPPPGNRKMHGDLMYLYVITMEDRHVSITASTRGFYLNQSTAYNFNPKPAN 272
Query: 306 ANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRD 365
+ + +L+ LL ++S FKK F + ++ HPFE + + SW P +H D
Sbjct: 273 PSFLSHSLVELLNQVSPTFKKNFAALQKKRVQRHPFERIATPFQLYSWTA--PQVEHAMD 330
Query: 366 AARAEDALT--LSYGSELIGMQRDWNEELQSCREF-----PQELLR-RAI---------- 407
RAEDA T L Y + G RDWNEELQ+ RE P+ LLR RAI
Sbjct: 331 CVRAEDAYTSRLGYEEHIPGQTRDWNEELQTTRELTRKNLPERLLRERAIFKVHSDFTAA 390
Query: 408 --NGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSG 465
GA+ VI + INP++ M++ NNIFFS D +H
Sbjct: 391 ATRGAMAVIDGNVMAINPSEETKMQMFIWNNIFFSLGFDVR-DH---------------- 433
Query: 466 KASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQE 525
Y + G+S A Y S NDL G +AY
Sbjct: 434 --------------YKDFGGDS--------------------AAYVSPTNDLNGVRAYNA 459
Query: 526 ADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKV 585
DV GL+ L ++DYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + +
Sbjct: 460 VDVEGLYTLGTVVVDYRGYRVTAQSIIPGILEREQEQSVIYGSIDFGKTVVSHPKYLELL 519
Query: 586 LEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANY----- 640
+ ++ L +++HTVL+ +L + VECKGI+G+D RHY+LDL+R P D N+
Sbjct: 520 EKTSRPLKIQKHTVLNDKDEEVELCSSVECKGIIGNDGRHYILDLLRTFPPDLNFLPVEG 579
Query: 641 -------TGLG------SRFCIMRPELITAFCQ------VEAAEKSKGQSKPEGEAIVNP 681
T +G + C +R EL+ AF + ++ A Q K + ++
Sbjct: 580 ETMPEECTKMGFPKEHRHKLCCLRQELVDAFVEHRYLLFMKLAAMHLMQQKASIKDVLGT 639
Query: 682 DSSEASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDS---------C 732
++S AS E N + D E +++ ++E +A +E+ D+ C
Sbjct: 640 EASTAS-----EQLEGNGPSEEKEDLDLDGEAQLKQLEETMAAHKETVDTRSKEVILKAC 694
Query: 733 DG----------ILFNPNAFTE-FKLAG-SQDEIAADEENVRKVSLYLADVVLPKFIQDL 780
I FNP+ F+ + SQ+E+ ++ ++ + ++ +P I+D
Sbjct: 695 QAVGSISNTSFDIRFNPDIFSPGVRFPNESQEEVQNQKQLLKDAAAFVLTCQIPCLIKDC 754
Query: 781 CTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP------HLWDLCSNEIVVRSAK 834
V PMDG TL EA+H GIN+RY+GKV D + P H++ + +E++ RSAK
Sbjct: 755 LDHSVVPMDGTTLAEAMHQRGINMRYLGKVIDVVRKFPVPSQLDHIYKILISEVITRSAK 814
Query: 835 HILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKS 894
HI K L+ E L AI+H NCF S + +++QS + S
Sbjct: 815 HIFKTYLQGVELSALSAAISHFLNCFLSSFPN-----SVAHLQSDELV-----------S 858
Query: 895 SRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP---EDARLWV---KK 948
+ + ++R ++++ N + LW ++ AK + F L D + V +K
Sbjct: 859 KKKSKKRRNRNLGNTDNTAWANTSPQELWKNICSEAKSYFDFNLECENVDQAMEVYNLQK 918
Query: 949 VSVMRNLCQKVGISVTARKYDFNAA--TPFETSDILNLQPVVKHSVPICSEAKNLVEMGK 1006
+S++R +C KVGI + ++Y+F++ F DILN+ PVVKH P ++A + + G+
Sbjct: 919 ISLLREICIKVGIQILLKEYNFDSKHKPTFTEEDILNIFPVVKHVNPKATDAFHFFQSGQ 978
Query: 1007 VQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKE 1066
++ +G L E L +EA ++ V G MH E+ C R LA + Y GD + A+ Q K
Sbjct: 979 AKVQQGYLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLNYIMGDYSEALSNQQKA 1038
Query: 1067 LIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT 1126
++++ER G++HP T Y ++AL+ NQ +L + RA L+ L G HP++A
Sbjct: 1039 VLMSERIQGVEHPSTVQEYMHLALYCFANNQVSTSLNLLYRARYLMPLVYGEGHPEMALL 1098
Query: 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186
N+ ++ + + D +LR+L+ AL N + G + ++ A+ +H +A + G F+ +
Sbjct: 1099 DSNIGLVLHGVMEYDLSLRFLENALTINSKYHGVKSLKVALSHHLVARVYETKGEFRSAL 1158
Query: 1187 QHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDIL 1246
QHEK Y I QLGE+ +T++S ++K + + + Q+ + + S + +
Sbjct: 1159 QHEKDGYTIYKNQLGEQHEKTRESSEYLKYLTQQAVAL--QRTMNEIYKNGSNANIMPLK 1216
Query: 1247 KAHPDLIHAFQAVAAAGG 1264
P + + + G
Sbjct: 1217 FTAPSMTSVLEQLNIING 1234
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q17N71|CLU_AEDAE Clustered mitochondria protein homolog OS=Aedes aegypti GN=AAEL000794 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 380/1270 (29%), Positives = 605/1270 (47%), Gaps = 215/1270 (16%)
Query: 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYN 143
+ V + + E L +Q++ + V +I Q L+D +TC TC+ L L DG T L+++
Sbjct: 112 FTVQILSPGVEPLSIQVSSMELVQEIHQLLMDREDTCHRTCFSLQL---DGVT--LDNFA 166
Query: 144 EISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSLALQYE 199
E+ + + G +++V Y R R HV RDLL + +SL +
Sbjct: 167 ELKNIEGLKEGS-IIKVVEEPYTMREARIHVRHVRDLLKSMDPADAYNGVDCSSLTFLHT 225
Query: 200 MAQSKV-------SSSGDAAKTE--VPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIV 250
+ Q + S S D E +P + G +GK Q +K + +
Sbjct: 226 ITQGDILEKKKGRSESVDCTPPEHIMPGAKDRPLLPLQPG-VGK---KGPQPLKVLTT-- 279
Query: 251 FSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEA 310
S++NP P R+L GDL+YL VVT+E ++ I+ + F++N S+ +V DPRP +
Sbjct: 280 -SAWNPPPGPRKLHGDLMYLYVVTMEDKRFHISACPRGFFINQSSDDVFDPRPDNPSYLC 338
Query: 311 TTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAE 370
+LI LL +IS F++ F ++ ++ HPFE V + +W P +H DA RAE
Sbjct: 339 HSLIDLLSQISPTFRRCFAQMQKKRTQRHPFERVATPYQVYTWSA--PALEHTIDAIRAE 396
Query: 371 DALT--LSYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGA 410
D + L Y + G RDWNEELQ+ RE P+E LLR RAI GA
Sbjct: 397 DTFSSKLGYEEHIPGQTRDWNEELQTTRELPRETLPERLLRERAIFKVHSDFVTAATRGA 456
Query: 411 IGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHN 470
+ VI + INP + M++ NNIFFS D +H
Sbjct: 457 MAVIDGNVMAINPGEDAKMQMFIWNNIFFSLGFDVR-DH--------------------- 494
Query: 471 FTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPG 530
Y E G++ A + + NDL G + Y DV G
Sbjct: 495 ---------YKELGGDA--------------------AAFVAPRNDLHGVRVYSAVDVEG 525
Query: 531 LHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAK 590
L+ L +IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + +E + + A K
Sbjct: 526 LYTLGTVVIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHEKYLELLNNAGK 585
Query: 591 RLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS----- 645
L + H+VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 586 HLKILPHSVLNEKEEEIELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLDEELSKD 645
Query: 646 ------------RFCIMRPELITAFCQV-------------------------EAAEKSK 668
+ +R EL+ AF + EA +
Sbjct: 646 CKALGFPIEHKHKLSCLRQELLEAFVESRYLMFIKHAAFQLQQLNSAKLKQKQEAKDSKD 705
Query: 669 GQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDV----SQDATKEG-----KVET-- 717
+ K E +AI ++ K++A NV + + S D K+ KVET
Sbjct: 706 SEKKEEPKAIEAAPVAKEPAKKDAAESNNNVESKEECPKKGSTDKAKDKSAGVPKVETEE 765
Query: 718 ---VQECRSASEESSDS-------CDG----------ILFNPNAFTE-FKLAGSQ---DE 753
+ E +S+E ++S C+ I FNP+ ++ K +Q +
Sbjct: 766 AKKLMESLLSSDEKNESKEVVKRACEAVGSLKEYEFDIRFNPDVYSPGIKHVDNQSAANS 825
Query: 754 IAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVAD- 812
+ ++ V+ + +L +P F+ D +PMDG TLTE LH+ GIN+RY+GKVA+
Sbjct: 826 LKKQKQLVKDAAEFLVKHQIPSFVHDCLDHTAAPMDGTTLTETLHSRGINVRYLGKVANL 885
Query: 813 --GTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVR-- 868
K L +L + +E+++R+AKHI ++ TE + AI+H NCF + AV
Sbjct: 886 LAKIKQLEYLHTIAVSELIIRAAKHIFTSYMQNTEMMSMAAAISHFLNCFLTATTAVSHS 945
Query: 869 GKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARK----------HHSSYMNVN 918
G ++ S+ ++ S S + Q R R A K ++ + +
Sbjct: 946 GSLSESDALTK----------SGSSGGKQQRRQNKRSAGSKGGKPSFQCTQDNNEWQLLT 995
Query: 919 SDTLWSDLKEFAKLKYQFEL----------PEDARLWVKKVSVMRNLCQKVGISVTARKY 968
+LWS +++ K + +EL P + ++K+S++R C K G+ + R+Y
Sbjct: 996 PKSLWSQIEKELKSYWDYELLPAGAHDSADPVVSHYRLQKISLLRAFCLKTGVQILLREY 1055
Query: 969 DF---NAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAF 1025
+F N T F SDI+N+ PVVKH P S+A N G+ ++ +G + Y L SEA
Sbjct: 1056 NFEMKNKPT-FGESDIVNVFPVVKHINPRASDAYNFYTTGQSKIQQGYFKDGYDLISEAL 1114
Query: 1026 SILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085
++L V G MH E A C R LA + Y GD A+ Q + ++++ER G+DHP T Y
Sbjct: 1115 NLLNNVYGAMHPENAQCLRMLARLSYIMGDPQEALAIQQRAVLMSERVNGIDHPYTIAEY 1174
Query: 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145
+AL+ +Q AL+ + RA L ++ G +HPD+A N++++ +G+ + +LR
Sbjct: 1175 APLALYCFANSQISTALKLLYRARYLATIVCGENHPDIALLDSNISLILHAVGEYELSLR 1234
Query: 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
+L+ AL N + GE+ ++ AV YH +A +CMG F+ + +EK+TY I +QLGE
Sbjct: 1235 FLEHALALNIKYYGEKSLKVAVSYHLVARTQSCMGDFRSALNNEKETYAIYKQQLGETHE 1294
Query: 1206 RTKDSQNWMK 1215
+T++S ++
Sbjct: 1295 KTQESSECLR 1304
|
Aedes aegypti (taxid: 7159) |
| >sp|B3MIW0|CLU_DROAN Protein clueless OS=Drosophila ananassae GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust.
Identities = 372/1245 (29%), Positives = 592/1245 (47%), Gaps = 172/1245 (13%)
Query: 81 LHLYPVTVKTQS--NEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHH 138
LH +TV S + L +QL+ + V +I Q L+D ETC TC+ L L D T
Sbjct: 137 LHEVGITVNISSPGADILSVQLSSMELVQEIHQLLMDREETCHRTCFSLQL---DNVT-- 191
Query: 139 LEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSL 194
L+++ E+ + + G T+ +V Y R R HV RDLL + TSL
Sbjct: 192 LDNFAELKTIEQLEQGS-TIRVVEEPYTMREARIHVRHVRDLLKNLDPADAYNGIDCTSL 250
Query: 195 ALQYEMAQS----KVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIV 250
+ Q K + D+ PE G E L + ++ + + ++ +
Sbjct: 251 TYLNTITQGDLLDKKKTRPDSVDCTPPEYVTPGVSEPPLLPLHPNIKNA-KGPQALKVLT 309
Query: 251 FSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEA 310
S++NP P R+L GDL+YL VVT+E ++ I+ +K FY+N ST + +P+P + +
Sbjct: 310 TSAWNPPPGPRKLHGDLMYLYVVTMEDKRFHISACSKGFYINQSTDDTFNPKPDNPSHLS 369
Query: 311 TTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAE 370
+LI LL IS F++AF+ I R+ + H FE V + W PV +H DA RAE
Sbjct: 370 HSLIDLLSHISPSFRRAFQTIQKRRTTRHAFERVATPYQVYQWAS--PVLEHTVDAIRAE 427
Query: 371 DALT--LSYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGA 410
DA + L Y + G RDWNEELQ+ RE P++ LLR RAI GA
Sbjct: 428 DAFSSKLGYEEHIPGQTRDWNEELQTTRELPRKTLPERLLRERAIFKVHGDFVTAATRGA 487
Query: 411 IGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHN 470
+ VI + INP + M++ NNIFFS D +H
Sbjct: 488 MAVIDGNVLAINPGEDAKMQMFIWNNIFFSLGFDVR-DH--------------------- 525
Query: 471 FTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPG 530
Y E G++ A + + DL G + Y DV G
Sbjct: 526 ---------YKELGGDA--------------------AAFVAPRYDLHGVRVYNAVDVEG 556
Query: 531 LHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAK 590
L+ L +IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + + +A K
Sbjct: 557 LYTLGTVVIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLDLLRQAGK 616
Query: 591 RLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS----- 645
L + H VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 617 HLKILPHAVLNERDEPVELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLPEVQLSK 676
Query: 646 -------------RFCIMRPELITAFCQ-------------VEAAEKSKGQSKPEGEAI- 678
+ C +R EL+ AF + ++ K K E +A+
Sbjct: 677 ELVDMGFPIEHRHKLCCLRQELLEAFIEDRYVSFIRIAAVHLQQLNAKKQSEKTEEKALP 736
Query: 679 -VNPDSSEASGIKESANHEVNVTATSDVSQDATKEGK-----VETVQECRS--------- 723
+ E+S KE+ + + Q ++ E K V ++E +S
Sbjct: 737 ALEEAEKESSETKEAEAEKPVEKKEEEKQQPSSNETKTAEAMVNAIREAQSNVATSNEVQ 796
Query: 724 ASEESSDSCDGI----------LFNPNAFTEFKL-----AGSQDEIAADEENVRKVSLYL 768
A+E +C + FNP+ F+ G+ +A + V+ + +L
Sbjct: 797 AAEVVKRACAAVGSLKEKEFDFRFNPDVFSNGIRHVDGEEGTCSSLAKQKVLVQDAAEFL 856
Query: 769 ADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP---HLWDLCS 825
+P FI++ P+DGQ+LTE+LH+HGIN+RY+GKV +P +L +
Sbjct: 857 VVKQIPAFIKEHLAHSSPPIDGQSLTESLHSHGINVRYLGKVIKLLAQMPRMDYLHRIAV 916
Query: 826 NEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEH 885
E++VR+ KHI ++ TE L AI+H NC + + + R+ +H
Sbjct: 917 LELIVRATKHIYYTYMQNTEPLHLSAAISHFLNCLLTTGPVNPAVSSEEAHKKRSNGNKH 976
Query: 886 AGHPSSSKSSRSQARWKDRVAARKHHSS-------YMNVNSDTLWSDLKEFAKLKYQFEL 938
H SK ++ QA ++ S + V +LW ++ AK + +EL
Sbjct: 977 NKH--KSKGNKQQASGNQNGSSAGSSSGGSSSSSDWTLVTPRSLWQQIRREAKSYWDWEL 1034
Query: 939 PED------ARLWVKKVSVMRNLCQKVGISVTARKYDFNA--ATPFETSDILNLQPVVKH 990
D ++ + ++S++R C KVGI V R+Y+F + F DI+N+ PVVKH
Sbjct: 1035 DCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDEDIVNVFPVVKH 1094
Query: 991 SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVL 1050
P ++A N G+ ++ +G+ E Y L SEA ++L V G MH+E +C R LA +
Sbjct: 1095 ISPRATDAYNFYTTGQAKIQQGMFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLS 1154
Query: 1051 YHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110
Y GD A+ Q + +I++ER G+DHP T Y +++L+ ++L+ + RA
Sbjct: 1155 YLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLYSFANGHVGMSLKLLYRARY 1214
Query: 1111 LLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYH 1170
L+ L G DHP+VA N++++ +G+ + +LR+++ ALK N + G + + A YH
Sbjct: 1215 LMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKLNIKYFGSKAMHVAFSYH 1274
Query: 1171 ALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215
+A +CMG F+ + +EK+TY I Q+GE+ +T+DS ++
Sbjct: 1275 LMARTQSCMGDFRSALNNEKETYSIYKSQVGEKHEKTRDSAECLR 1319
|
Drosophila ananassae (taxid: 7217) |
| >sp|B4P6P7|CLU_DROYA Protein clueless OS=Drosophila yakuba GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 369/1241 (29%), Positives = 595/1241 (47%), Gaps = 171/1241 (13%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEI 145
V + + + L +QL+ + V +I Q L+D ETC TC+ L L D +T L+++ E+
Sbjct: 143 VNISSPGADVLCVQLSSMELVQEIHQLLMDREETCHRTCFSLQL---DNAT--LDNFAEL 197
Query: 146 SEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSLALQYEMA 201
++++ G T+++V Y R R HV RDLL + TSL +
Sbjct: 198 KAISNLEQGS-TIKVVEEPYTMREARIHVRHVRDLLKNLDPADAYNGIDCTSLTYLNTIT 256
Query: 202 QS----KVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPS 257
Q K + D+ PE G E L + ++ + + ++ + S++NP
Sbjct: 257 QGDLLDKKKTRPDSVDCTPPEYVTPGVSEPPLLPLHPNVKNA-KGPQALKVLTTSAWNPP 315
Query: 258 PSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLL 317
P R+L GDL+YL VVT+E ++ I+ +K FY+N ST + +P+P + + +LI LL
Sbjct: 316 PGPRKLHGDLMYLYVVTMEEKRFHISACSKGFYINQSTDDTFNPKPDNPSHLSHSLIDLL 375
Query: 318 QKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALT--L 375
IS F++AF+ I R+ H FE V + W P +H DA RAEDA + L
Sbjct: 376 SHISPSFRRAFQTIQKRRTMRHAFERVATPYQVYQWAS--PTLEHTVDAIRAEDAFSSKL 433
Query: 376 SYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGAIGVISRC 417
Y + G RDWNEELQ+ RE P++ LLR RAI GA+ VI
Sbjct: 434 GYEEHIPGQTRDWNEELQTTRELPRKTLPERLLRERAIFKVHGDFVTAATRGAMAVIDGN 493
Query: 418 IPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGG 477
+ INP + M++ NNIFFS D +H
Sbjct: 494 VLAINPGEDPKMQMFIWNNIFFSLGFDVR-DH---------------------------- 524
Query: 478 ISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMA 537
Y E G++ A + + DL G + Y DV GL+ L
Sbjct: 525 --YKELGGDA--------------------AAFVAPRYDLHGVRVYNAVDVEGLYTLGTV 562
Query: 538 IIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEH 597
+IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + + +A K L + H
Sbjct: 563 VIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRQAGKHLKILPH 622
Query: 598 TVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS------------ 645
VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 623 AVLNERDEPVELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLQDVQLSKELVDMGF 682
Query: 646 ------RFCIMRPELITAFC----------------QVEA---AEKSKGQSKP--EG-EA 677
+ C +R EL+ AF Q+ A +EK++G+ P EG +A
Sbjct: 683 PIEHRHKLCCLRQELLEAFIEDRHVSFIRIAAVHLQQLNAKKQSEKTEGKPVPALEGADA 742
Query: 678 IVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRS---------ASEES 728
+ ++ + +KE N E A S + T E V ++E +S A+E
Sbjct: 743 ASKVNGADKTDVKEEKNEENEEKAQSTTGESKTAEAMVNAIREAQSNVATSNEVQAAEVV 802
Query: 729 SDSCDGI----------LFNPNAFTEFKL-----AGSQDEIAADEENVRKVSLYLADVVL 773
+C + FNP+ F+ G+ +A + V++ + +L +
Sbjct: 803 KRACAAVGSLKEKEFDFRFNPDVFSPGIRHVDGEEGTCSSLAKQKVLVQEAAEFLVLKQI 862
Query: 774 PKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP---HLWDLCSNEIVV 830
P FI++ T P+DGQ+LTE+LH+HGIN+RY+GKV +P +L + E++V
Sbjct: 863 PAFIKEHMTHSSPPIDGQSLTESLHSHGINVRYLGKVIKILGQMPRMDYLHRIAVLELIV 922
Query: 831 RSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPS 890
R+ KHI ++ TE L AI+H NC + + + R +H H S
Sbjct: 923 RATKHIYYTYMQNTEPLHLSAAISHFLNCLLTNGPVNPAVSSEEAHKKRGNGGKHNKHKS 982
Query: 891 SSKSSRSQARWKDRVAARKHHSS--------YMNVNSDTLWSDLKEFAKLKYQFELPEDA 942
S Q + + + V +LW +++ AK+ + +EL D+
Sbjct: 983 SKGGKGQQQQQTTGNQNGSSSGTSNGSSVSDWTLVTPRSLWQQIRKEAKVYWDWELDCDS 1042
Query: 943 ------RLWVKKVSVMRNLCQKVGISVTARKYDFNAA--TPFETSDILNLQPVVKHSVPI 994
+ + ++S++R C KVGI V R+Y+F + F D++N+ PVVKH P
Sbjct: 1043 IETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESKHKPTFGDDDVVNVFPVVKHISPR 1102
Query: 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1054
++A N G+ ++ +G+ E Y L S A ++L V G +H+E +C R LA + Y G
Sbjct: 1103 ATDAYNFYTTGQAKIQQGMFKEGYELISGALNLLNNVFGALHQENGSCLRMLARLSYLLG 1162
Query: 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114
D A+ Q + +I++ER G+DHP T Y +++L+ ++L+ + RA L+ L
Sbjct: 1163 DAQDALAIQQRAVIMSERVNGMDHPSTILEYTHLSLYSFANGHVGMSLKLLYRARYLMVL 1222
Query: 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174
G DHP+VA N++++ +G+ + +LR+++ ALK N + G++ + A+ YH +A
Sbjct: 1223 ICGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKLNLKYFGDKAMPVALSYHLMAR 1282
Query: 1175 AFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215
+CMG F+ + +EK+TY QLGE +T+DS ++
Sbjct: 1283 TQSCMGDFRSALNNEKETYSFYKSQLGENHEKTRDSAECLR 1323
|
Drosophila yakuba (taxid: 7245) |
| >sp|Q291J5|CLU_DROPS Protein clueless OS=Drosophila pseudoobscura pseudoobscura GN=clu PE=3 SV=2 | Back alignment and function description |
|---|
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 362/1236 (29%), Positives = 585/1236 (47%), Gaps = 167/1236 (13%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEI 145
V + +E L +QL+ + V +I Q L+D E+C TC+ L L D T L+++ E+
Sbjct: 139 VNISCPGSELLTVQLSSMELVQEIHQLLMDREESCHRTCFSLQL---DNVT--LDNFAEL 193
Query: 146 SEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSLALQYEMA 201
+ + +G T+++V Y R R HV RDLL + TSL +
Sbjct: 194 KTIEQLESGS-TIKVVEEPYTMREARIHVRHVRDLLKNLDPADAYNGIECTSLTYLNTIT 252
Query: 202 QS----KVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPS 257
Q K + D+ P+ G E L ++ + + ++ + S++NP
Sbjct: 253 QGDLLDKKKTRPDSVDCTPPDYVTPGVFEPPLLPLHPNFKNA-KGPQALKVLTTSAWNPP 311
Query: 258 PSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLL 317
P R+L GDL+YL V+T+E +Y I+ ++ F++N ST + +P+P + + +LI LL
Sbjct: 312 PGPRKLHGDLMYLYVITMEEKRYHISACSRGFFINQSTDDTFNPKPDNPSYLSHSLIDLL 371
Query: 318 QKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALT--L 375
IS F++AF+ I R+ H FE V + W P +H DA RAEDA + L
Sbjct: 372 SHISPSFRRAFQAIQKRRTLRHAFERVATPYQVYQWAA--PNLEHTVDAIRAEDAFSSKL 429
Query: 376 SYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGAIGVISRC 417
Y + G RDWNEELQ+ RE P++ LLR RAI GA+ VI
Sbjct: 430 GYEEHIPGQTRDWNEELQTTRELPRKTLPERLLRERAIFKVHGDFVTAATRGAMAVIDGN 489
Query: 418 IPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGG 477
+ INP + M++ NNIFFS F D
Sbjct: 490 VLAINPGEDSKMQMFIWNNIFFSLG----------------------------FDVRD-- 519
Query: 478 ISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMA 537
Y E G+ A Y + DL G + Y DV GL+ L
Sbjct: 520 -HYKELGGD--------------------YAAYVAPRYDLHGVRVYNAVDVEGLYTLGTV 558
Query: 538 IIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEH 597
+IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + + +A K L + H
Sbjct: 559 VIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRQAGKHLKILPH 618
Query: 598 TVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS------------ 645
+V + +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 619 SVYNERDEPVELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLQEVKLSTELVEMGF 678
Query: 646 ------RFCIMRPELITAFCQ------------------VEAAEKSKGQSKPEGEAI--- 678
+ C +R EL+ AF + + E+++ + K + AI
Sbjct: 679 PIEHRHKLCCLRQELLEAFVEDRYVNFIRIAAVHLQQLNAKKPEETQSEEKKQLPAIEEA 738
Query: 679 ---------VN--PDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETV----QECRS 723
VN P+ E E+ N E V A + + +++ Q C +
Sbjct: 739 EKENKENLNVNETPNEKEKDTPVETKNAEAMVNAIREAQSNVATSNEIQAAEVVKQACAA 798
Query: 724 ASEESSDSCDGILFNPNAFTEFKL-----AGSQDEIAADEENVRKVSLYLADVVLPKFIQ 778
D FNP+ F+ G+ +A + V+ + +L +P F++
Sbjct: 799 VGSMKEKEFD-FRFNPDVFSPGIRHVDGEEGTSGSVAKQKLLVQDAAEFLVVKQIPAFVK 857
Query: 779 DLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP---HLWDLCSNEIVVRSAKH 835
+ + P+DGQ LTE+LH+HGIN+RY+GKV +P +L+ + E++VR+ KH
Sbjct: 858 EHLSHSSPPIDGQNLTESLHSHGINVRYLGKVIKALGQMPRMDYLYRIAVMELIVRATKH 917
Query: 836 ILKDVLRETEDHDLGPAIAHLFNCFF--GSCQAVRG-----KVTASNVQSRNQMKEHAGH 888
I ++ T+ L AI+H NC G V K N N+ K G
Sbjct: 918 IYYTYMQSTDPMHLSVAISHFLNCLLTNGPINPVVSNDEMHKKRGGNGGKHNKHKSSKGG 977
Query: 889 PSSSKSSRSQARWKDRVAARKHHS-SYMNVNSDTLWSDLKEFAKLKYQFELPED------ 941
+ + +Q ++ ++ + V +LW +++ +K + ++L D
Sbjct: 978 KGQQQPAINQNGGSTTSSSSSANAYDWTLVTPRSLWQQIRKESKAYWDWDLDCDSMDSAM 1037
Query: 942 ARLWVKKVSVMRNLCQKVGISVTARKYDFNA--ATPFETSDILNLQPVVKHSVPICSEAK 999
++ + ++ ++R C KVGI V R+Y+F++ F DI+N+ PVVKH P S+A
Sbjct: 1038 SKFGIMRICLLRAFCLKVGIQVLLREYNFDSKHKPTFGDDDIVNVFPVVKHISPRASDAY 1097
Query: 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGA 1059
N G+ ++ +GL E Y L SEA ++L V G MH+E +C R LA + Y GD A
Sbjct: 1098 NFYTTGQAKIQQGLFKEGYELISEALNLLNNVFGAMHQENGSCLRMLARLSYLLGDAQDA 1157
Query: 1060 IMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119
+ Q + +I++ER G+D+P T Y +++L+ ++L+ + RA LL L+ G D
Sbjct: 1158 LAIQQRAVIMSERVNGIDNPSTILEYTHLSLYSFANGHVGMSLKLLYRARYLLVLTCGED 1217
Query: 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM 1179
HP+VA N++++ +G+ + +LR+++ ALK N + G + + AV YH +A +CM
Sbjct: 1218 HPEVALIDSNISLILHALGEYELSLRFIEHALKLNLKYFGNKAMHVAVSYHLMARTQSCM 1277
Query: 1180 GAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215
G F+ + +EK+TY I QLGE+ +T+DS ++
Sbjct: 1278 GDFRSALNNEKETYSIYKSQLGEKHEKTRDSAECLR 1313
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAM1|CLU_DROPE Protein clueless OS=Drosophila persimilis GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 369/1262 (29%), Positives = 595/1262 (47%), Gaps = 171/1262 (13%)
Query: 61 QADVQESDTAN-SADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPET 119
+AD E DT + D +H V + +E L +QL+ + V +I Q L+D E+
Sbjct: 116 EADAAELDTEDIDLDALHDAGIH---VNISCPGSELLTVQLSSMELVQEIHQLLMDREES 172
Query: 120 CFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRD 179
C TC+ L L D T L+++ E+ + + +G T+++V Y R R HV RD
Sbjct: 173 CHRTCFSLQL---DNVT--LDNFAELKTIEQLESGS-TIKVVEEPYTMREARIHVRHVRD 226
Query: 180 LLS----LSTLHASLSTSLALQYEMAQS----KVSSSGDAAKTEVPELDGLGFMEDVSGS 231
LL + TSL + Q K + D+ P+ G E
Sbjct: 227 LLKNLDPADAYNGIECTSLTYLNTITQGDLLDKKKTRPDSVDCTPPDYVTPGVFEPPLLP 286
Query: 232 LGKLLSSSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYV 291
L ++ + + ++ + S++NP P R+L GDL+YL V+T+E +Y I+ ++ F++
Sbjct: 287 LHPNFKNA-KGPQALKVLTTSAWNPPPGPRKLHGDLMYLYVITMEEKRYHISACSRGFFI 345
Query: 292 NSSTGNVLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPN 351
N ST + +P+P + + +LI LL IS F++AF+ I R+ H FE V +
Sbjct: 346 NQSTDDTFNPKPDNPSYLSHSLIDLLSHISPSFRRAFQAIQKRRTLRHAFERVATPYQVY 405
Query: 352 SWLGLYPVPDHKRDAARAEDALT--LSYGSELIGMQRDWNEELQSCREFPQE-----LLR 404
W P +H DA RAEDA + L Y + G RDWNEELQ+ RE P++ LLR
Sbjct: 406 QWAA--PNLEHTVDAIRAEDAFSSKLGYEEHIPGQTRDWNEELQTTRELPRKTLPERLLR 463
Query: 405 -RAI------------NGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLS 451
RAI GA+ VI + INP + M++ NNIFFS
Sbjct: 464 ERAIFKVHGDFVTAATRGAMAVIDGNVLAINPGEDSKMQMFIWNNIFFSLG--------- 514
Query: 452 RKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYA 511
F D Y E G+ A Y
Sbjct: 515 -------------------FDVRD---HYKELGGD--------------------YAAYV 532
Query: 512 SANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDN 571
+ DL G + Y DV GL+ L +IDYRG+RV AQS++PGIL+ ++ S++YGS+D
Sbjct: 533 APRYDLHGVRVYNAVDVEGLYTLGTVVIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDF 592
Query: 572 GKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLM 631
GK + + + + +A K L + H+V + +L + VECKGI+G+D RHY+LDL+
Sbjct: 593 GKTVLSHPKYLELLRQAGKHLKILPHSVYNERDEPVELCSSVECKGIIGNDGRHYILDLL 652
Query: 632 RVTPRDANYTGLGS------------------RFCIMRPELITAFCQ------------- 660
R P D N+ L + C +R EL+ AF +
Sbjct: 653 RTFPPDVNFLKLQEVKLSTELVEMGFPIEHRHKLCCLRQELLEAFVEDRYVNFIRIAAVH 712
Query: 661 -----VEAAEKSKGQSKPEGEAI------------VN--PDSSEASGIKESANHEVNVTA 701
+ E+++ + K + AI VN P+ E E+ N E V A
Sbjct: 713 LQQLNAKKPEETQSEEKKQLPAIEEAEKENKENLNVNETPNEKEKDTPVETKNAEAMVNA 772
Query: 702 TSDVSQDATKEGKVETV----QECRSASEESSDSCDGILFNPNAFTEFKL-----AGSQD 752
+ + +++ Q C + D FNP+ F+ G+
Sbjct: 773 IREAQSNVATSNEIQAAEVVKQACAAVGSMKEKEFD-FRFNPDVFSPGIRHVDGEEGTSG 831
Query: 753 EIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVAD 812
+A + V+ + +L +P F+++ + P+DGQ LTE+LH+HGIN+RY+GKV
Sbjct: 832 SVAKQKLLVQDAAEFLVVKQIPAFVKEHLSHSSPPIDGQNLTESLHSHGINVRYLGKVIK 891
Query: 813 GTKHLP---HLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFF--GSCQAV 867
+P +L+ + E++VR+ KHI ++ T+ L AI+H NC G V
Sbjct: 892 TLGQMPRMDYLYRIAVMELIVRATKHIYYTYMQSTDPMHLSVAISHFLNCLLTNGPINPV 951
Query: 868 RG-----KVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHS-SYMNVNSDT 921
K N N+ K G + + +Q ++ ++ + V +
Sbjct: 952 VSNDEMHKKRGGNGGKHNKHKSSKGGKGQQQPAINQNGGSTTSSSSSANAYDWTLVTPRS 1011
Query: 922 LWSDLKEFAKLKYQFELPEDA------RLWVKKVSVMRNLCQKVGISVTARKYDFNA--A 973
LW +++ +K + ++L D+ + + ++ ++R C KVGI V R+Y+F++
Sbjct: 1012 LWQQIRKESKAYWDWDLDCDSMDSAMNKFGIMRICLLRAFCLKVGIQVLLREYNFDSKHK 1071
Query: 974 TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTG 1033
F DI+N+ PVVKH P S+A N G+ ++ +GL E Y L SEA ++L V G
Sbjct: 1072 PTFGDDDIVNVFPVVKHISPRASDAYNFYTTGQAKIQQGLFKEGYELISEALNLLNNVFG 1131
Query: 1034 PMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYH 1093
MH+E +C R LA + Y GD A+ Q + +I++ER G+D+P T Y +++L+
Sbjct: 1132 AMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDNPSTILEYTHLSLYSF 1191
Query: 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153
++L+ + RA LL L+ G DHP+VA N++++ +G+ + +LR+++ ALK
Sbjct: 1192 ANGHVGMSLKLLYRARYLLVLTCGEDHPEVALIDSNISLILHALGEYELSLRFIEHALKL 1251
Query: 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNW 1213
N + G + + AV YH +A +CMG F+ + +EK+TY I QLGE+ +T+DS
Sbjct: 1252 NLKYFGNKAMHVAVSYHLMARTQSCMGDFRSALNNEKETYSIYKSQLGEKHEKTRDSAEC 1311
Query: 1214 MK 1215
++
Sbjct: 1312 LR 1313
|
Drosophila persimilis (taxid: 7234) |
| >sp|B4KT50|CLU_DROMO Protein clueless OS=Drosophila mojavensis GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 380/1263 (30%), Positives = 597/1263 (47%), Gaps = 195/1263 (15%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEI 145
V + + + L +QL+ + V +I Q L+D ETC TC+ L L D T L+++ E+
Sbjct: 157 VNISSPGADVLSVQLSSMELVQEIHQLLMDREETCHRTCFSLQL---DNVT--LDNFAEL 211
Query: 146 SEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSLALQYEMA 201
+ + G T+ +V Y R R HV RDLL + TSL +
Sbjct: 212 KTIEGLEQGS-TIRVVEEPYTMREARIHVRHVRDLLKNLDPADAYNGIDCTSLTYLITIT 270
Query: 202 QS----KVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPS 257
Q K + D+ P+ G E L + ++ + + ++ + S++NP
Sbjct: 271 QGDLLDKKRTRPDSVDCTPPDYVIPGVREPPLLPLHPNIKNA-KGPQALKVLTTSAWNPP 329
Query: 258 PSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLL 317
P R+L GDL+YL VVT+E ++ I+ +K FY+N ST +P+P + + +LI LL
Sbjct: 330 PGPRKLHGDLMYLYVVTMEDKRFHISACSKGFYINQSTDECFNPKPDNPSHLSHSLIDLL 389
Query: 318 QKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALT--L 375
IS F++AF+ I R+ H FE V + W P +H DA RAEDA + L
Sbjct: 390 SHISPSFRRAFQTIQKRRTMRHAFERVATPYQVYQWSA--PQLEHTVDAIRAEDAFSSKL 447
Query: 376 SYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGAIGVISRC 417
Y + G RDWNEELQ+ RE P++ LLR RAI GA+ VI
Sbjct: 448 GYEEHIPGQTRDWNEELQTTRELPRKTLPERLLRERAIFKVHGDFVTAATRGAMAVIDGN 507
Query: 418 IPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGG 477
+ INP + M++ NNIFFS D +H
Sbjct: 508 VLAINPGEDPKMQMFIWNNIFFSLGFDVR-DH---------------------------- 538
Query: 478 ISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMA 537
Y E G+ A + + DL G + Y D+ GL+ L
Sbjct: 539 --YKELGGD--------------------HAAFVAPRYDLHGVRVYNAVDIEGLYTLGTV 576
Query: 538 IIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEH 597
+IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + + A K L + H
Sbjct: 577 VIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRLAGKHLKILPH 636
Query: 598 TVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANY------------TGLG- 644
+VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ T +G
Sbjct: 637 SVLNERDEPVELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLQDVQLSKELTDMGF 696
Query: 645 -----SRFCIMRPELITAFCQ--------VEAAE----KSKGQSKPEGEAIVNPDSSEAS 687
+ C +R EL+ AF + + A +K Q++ E +I
Sbjct: 697 PIEHRHKLCCLRQELLEAFIEDRYVTFIRIAAVHLQQLNAKKQAEKELPSITEKQEEPEK 756
Query: 688 GIKESAN------------HEVNVTATSDVSQDATK--EGKVETVQECRS---------A 724
E ++ + + S S TK E V ++E +S A
Sbjct: 757 EQAEKSSAEQPEKEKEKEKDKEDEQKESKPSPTETKSAEAMVNAIREAQSNVAVSNEVQA 816
Query: 725 SEESSDSCDGI----------LFNPNAFT------EFKLAGSQDEIAADEENVRKVSLYL 768
+E +C + FNP+ F+ + +G+Q +A + V+ + +L
Sbjct: 817 AEVVKRACAAVGSLKEKEFDFRFNPDVFSPGIRHVDSPESGAQS-LAKQKRLVQDAAEFL 875
Query: 769 ADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP---HLWDLCS 825
+P FI++ P+DGQ+LTE+LH+HGIN+RY+GKV +P +L +
Sbjct: 876 VLKQIPAFIKEHMAHSSPPIDGQSLTESLHSHGINVRYLGKVIKMLSQMPRMDYLHRIAI 935
Query: 826 NEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNV---QSRNQM 882
E++VR+ KHI ++ TE L AI+H NC + V V++ V QSRN
Sbjct: 936 LELIVRATKHIYYTYMQSTEPLHLSAAISHFLNCLL-TTGPVNPAVSSEEVHKKQSRNNG 994
Query: 883 KEHAGHPSSSKSSRSQARWKDRVAARKHHSSYM---------------NVNSD------- 920
+H H S+KS + Q+ H S+ N N D
Sbjct: 995 GKHNKHNKSNKSGKPQSTSAAAATQNGHSSTAANGSANSAANTASTSGNSNYDWTLVTPR 1054
Query: 921 TLWSDLKEFAKLKYQFELPED------ARLWVKKVSVMRNLCQKVGISVTARKYDFNAA- 973
+LW +++ K + +EL D A+ + ++S++R C KVGI V R+Y+F +
Sbjct: 1055 SLWQQIRKEIKSYWNWELDCDSIESACAKYGLLRISLLRAFCLKVGIQVLLREYNFESKH 1114
Query: 974 -TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT 1032
F DI+N+ PVVKH P ++A N G+ ++ +GLL E Y L SEA ++L V
Sbjct: 1115 KPTFGDDDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGLLKEGYELISEALNLLNNVF 1174
Query: 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFY 1092
G MH+E +C R LA + Y GD A+ Q + +I++ER G+DHP T Y +++L+
Sbjct: 1175 GAMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLYS 1234
Query: 1093 HGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
++L+ + RA LL L G DHP+VA N++++ +G+ + +LR+++ ALK
Sbjct: 1235 FANGHVGMSLKLLYRARYLLVLVCGEDHPEVALIDSNISLILHALGEYELSLRFIEHALK 1294
Query: 1153 KNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212
N + G + + AV YH +A +CMG F+ + +EK+TY I QLGE+ +T++S
Sbjct: 1295 LNLKYFGNKAMHVAVSYHLMARIQSCMGDFRSALNNEKETYSIYKSQLGEKHDKTRESAE 1354
Query: 1213 WMK 1215
++
Sbjct: 1355 CLR 1357
|
Drosophila mojavensis (taxid: 7230) |
| >sp|B4JW99|CLU_DROGR Protein clueless OS=Drosophila grimshawi GN=clu PE=3 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust.
Identities = 374/1267 (29%), Positives = 597/1267 (47%), Gaps = 199/1267 (15%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEI 145
V + + + L +QL+ + V +I Q L+D ETC TC+ L L D T L+++ E+
Sbjct: 151 VNISSPGTDVLSVQLSSMELVQEIHQLLMDREETCHRTCFSLQL---DNVT--LDNFAEL 205
Query: 146 SEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLS----LSTLHASLSTSLALQYEMA 201
+ + G T+ +V Y R R HV RDLL + TSL +
Sbjct: 206 KTIEPLEQGS-TIRVVEEPYTMREARIHVRHVRDLLKNLDPADAYNGIDCTSLTYLNTIT 264
Query: 202 QS----KVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPS 257
Q K + D+ P+ G E L + ++ + ++ + S++NP
Sbjct: 265 QGDLLDKKRTRPDSVDCTPPDYVTPGVREPPLLPLHPNIKNAKGP-QALKVLTTSAWNPP 323
Query: 258 PSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLL 317
P R+L GDL+YL VVT+E ++ I+ +K FY+N ST + +P+P + + +LI LL
Sbjct: 324 PGPRKLHGDLMYLYVVTMEDKRFHISACSKGFYINQSTDDNFNPKPDNPSHLSHSLIDLL 383
Query: 318 QKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALT--L 375
IS F++AF+ I R+ H FE V + W P +H DA RAEDA + L
Sbjct: 384 SHISPSFRRAFQAIQKRRTMRHAFERVATPYQVYQWSA--PQLEHTVDAIRAEDAFSSKL 441
Query: 376 SYGSELIGMQRDWNEELQSCREFPQE-----LLR-RAI------------NGAIGVISRC 417
Y + G RDWNEELQ+ RE P++ LLR RAI GA+ VI
Sbjct: 442 GYEEHIPGQTRDWNEELQTTRELPRKTLPERLLRERAIFKVHGDFVTAATRGAMAVIDGN 501
Query: 418 IPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGG 477
+ INP + M++ NNIFFS D +H
Sbjct: 502 VLAINPGEDAKMQMFIWNNIFFSLGFDVR-DH---------------------------- 532
Query: 478 ISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMA 537
Y E G+ A + + DL G + Y DV GL+ L
Sbjct: 533 --YKELGGD--------------------HAAFVAPRYDLHGVRVYNAVDVEGLYTLGTV 570
Query: 538 IIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEH 597
+IDYRG+RV AQS++PGIL+ ++ S++YGS+D GK + + + + A K L + H
Sbjct: 571 VIDYRGYRVTAQSIIPGILEREQEQSVVYGSIDFGKTVLSHPKYLELLRLAGKHLKILPH 630
Query: 598 TVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGS------------ 645
+VL+ +L + VECKGI+G+D RHY+LDL+R P D N+ L
Sbjct: 631 SVLNERDEPVELCSSVECKGIIGNDGRHYILDLLRTFPPDVNFLKLEDVQMSKDLSEMGF 690
Query: 646 ------RFCIMRPELITAFCQ--------VEAAEKSKGQSKPEGEAIVNPDSSEASGIKE 691
+ C +R EL+ AF + + AA + +K + + + + S ++
Sbjct: 691 PIEHRHKLCCLRQELLEAFIEDRYVTFIRIAAAHLQRLNAKKQADKDLPEEQSTEKPTEQ 750
Query: 692 SANHE-----------VNVTATSDVSQDATK--EGKVETVQECRS---------ASEESS 729
SA + + A + S TK E V ++E +S A+E
Sbjct: 751 SAEKDPMEKEQDKEKEKDKEAKPNTSSTETKSAEAMVNAIREAQSNVAVSNEVQAAEVVK 810
Query: 730 DSCDGI----------LFNPNAFTEFKLA-----GSQDEIAADEENVRKVSLYLADVVLP 774
+C + FNP+ F+ G +A + V+ + +L +P
Sbjct: 811 RACATVGSLKEKEFDFRFNPDVFSPGIRHIDGPDGGGQSLAKQKRLVQDAAEFLVLKQIP 870
Query: 775 KFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP---HLWDLCSNEIVVR 831
FI++ P+DGQ+LTE+LH+HGIN+RY+GKV +P +L + E++VR
Sbjct: 871 AFIKEHTAHSSPPIDGQSLTESLHSHGINVRYLGKVIKMLGQMPRMDYLHRIAILELIVR 930
Query: 832 SAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAG-HPS 890
+ KHI ++ TE L AI+H NC + V V++ V + Q++ + G H
Sbjct: 931 ATKHIYYTYMQSTEPLHLSAAISHFLNCLL-TTGPVNPAVSSEEVH-KKQLRNNGGKHNK 988
Query: 891 SSKSSRSQARWKDRVAARKHHSS----------------------------------YMN 916
+KSS+SQA+ + ++ ++ +
Sbjct: 989 HNKSSKSQAKPQSSSSSSSSAAASTQNGGNNHNSNNSTAAAAGAASSSSASNNSSADWTL 1048
Query: 917 VNSDTLWSDLKEFAKLKYQFELPED------ARLWVKKVSVMRNLCQKVGISVTARKYDF 970
V +LW +++ K + FEL D A+ ++S++R C KVGI V R+Y+F
Sbjct: 1049 VTPRSLWQQIRKETKAYWNFELDCDSVETAGAKYGFLRISLLRAFCLKVGIQVLLREYNF 1108
Query: 971 NAA--TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSIL 1028
+ F DI+N+ PVVKH P ++A N G+ ++ +GLL E Y L SEA ++L
Sbjct: 1109 ESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGLLKEGYELISEALNLL 1168
Query: 1029 QQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM 1088
V G MH+E +C R LA + Y GD A+ Q + +I++ER G+DHP T Y ++
Sbjct: 1169 NNVFGAMHQENGSCLRMLARLSYLLGDAGDALAIQQRAVIMSERVNGIDHPSTILEYTHL 1228
Query: 1089 ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148
+L+ ++L+ + RA LL L G DHP+VA N++++ +G+ + +LR+++
Sbjct: 1229 SLYSFANGHVGMSLKLLYRARYLLVLICGEDHPEVALIDSNISLILHALGEYELSLRFIE 1288
Query: 1149 EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208
ALK N + G++ + AV YH +A +CMG F+ + +EK+TY I Q+GE+ +T+
Sbjct: 1289 HALKLNRKYFGDKAMHVAVSYHLMARTQSCMGDFRSALSNEKETYSIYKSQMGEKHEKTR 1348
Query: 1209 DSQNWMK 1215
+S ++
Sbjct: 1349 ESAECLR 1355
|
Drosophila grimshawi (taxid: 7222) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1403 | ||||||
| 255544272 | 1424 | eukaryotic translation initiation factor | 0.992 | 0.978 | 0.788 | 0.0 | |
| 297736213 | 1445 | unnamed protein product [Vitis vinifera] | 0.994 | 0.965 | 0.775 | 0.0 | |
| 359487430 | 1442 | PREDICTED: protein KIAA0664 homolog [Vit | 0.992 | 0.965 | 0.772 | 0.0 | |
| 356555293 | 1433 | PREDICTED: protein KIAA0664 homolog [Gly | 0.992 | 0.971 | 0.731 | 0.0 | |
| 356528568 | 1442 | PREDICTED: protein KIAA0664 homolog [Gly | 0.995 | 0.968 | 0.733 | 0.0 | |
| 449463775 | 1410 | PREDICTED: clustered mitochondria protei | 0.977 | 0.973 | 0.740 | 0.0 | |
| 449501567 | 1406 | PREDICTED: LOW QUALITY PROTEIN: clustere | 0.975 | 0.973 | 0.739 | 0.0 | |
| 224055259 | 1349 | predicted protein [Populus trichocarpa] | 0.924 | 0.961 | 0.775 | 0.0 | |
| 224106035 | 1343 | predicted protein [Populus trichocarpa] | 0.918 | 0.959 | 0.762 | 0.0 | |
| 357457613 | 1540 | hypothetical protein MTR_3g027610 [Medic | 0.982 | 0.895 | 0.728 | 0.0 |
| >gi|255544272|ref|XP_002513198.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223547696|gb|EEF49189.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2195 bits (5688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1131/1434 (78%), Positives = 1229/1434 (85%), Gaps = 41/1434 (2%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSSEKDSNSPSESVIVDANANGVPAVSESTIA 60
MAGKSN+GRNRK S+ T +++ SA + KD+ SE+ A+ANGVPAV EST A
Sbjct: 1 MAGKSNRGRNRKGSNTTTNSSSESAVTASAPVKDNLIASETA--KADANGVPAVIESTNA 58
Query: 61 -QADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPET 119
ES+T SA+EPKQGELHLYPV+VKTQS+EKLELQLNPGDSVMDIRQFLLDAPET
Sbjct: 59 IPPGGSESETTTSANEPKQGELHLYPVSVKTQSSEKLELQLNPGDSVMDIRQFLLDAPET 118
Query: 120 CFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRD 179
CFFTCYDLVL TKDGSTH LEDYNEISEVADITTGGC+LEMVAA YDDRS+RAHVHRTR+
Sbjct: 119 CFFTCYDLVLRTKDGSTHQLEDYNEISEVADITTGGCSLEMVAAPYDDRSVRAHVHRTRE 178
Query: 180 LLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSS 239
LLSLSTLH+SLSTSLAL+YE AQ+K + KTEVPELDGLGFM+DV+GSLGKLLSS
Sbjct: 179 LLSLSTLHSSLSTSLALEYETAQTK---GPETVKTEVPELDGLGFMDDVAGSLGKLLSSP 235
Query: 240 TQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVL 299
++EIKCVESIVFSSFNP PS+RRLVGDLIYLDVVTLEG KYCITGTTK FYVNSSTGN L
Sbjct: 236 SKEIKCVESIVFSSFNPPPSYRRLVGDLIYLDVVTLEGTKYCITGTTKTFYVNSSTGNAL 295
Query: 300 DPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPV 359
DP+PSK+ SEATTLIGLLQKISSKFKKAFREIL+RKASAHPFENVQSLLPPNSWLGL+P+
Sbjct: 296 DPKPSKSTSEATTLIGLLQKISSKFKKAFREILERKASAHPFENVQSLLPPNSWLGLHPI 355
Query: 360 PDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR---------- 405
PDH+RDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP QE + R
Sbjct: 356 PDHRRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFPHTTPQERILRDRALYKVTSD 415
Query: 406 ----AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDI--- 458
AI+GAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVD+DL LS+K +D
Sbjct: 416 FVDAAISGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDADLEQLSKKHTADTNSK 475
Query: 459 -----ISINSSGKASHNFTSADGGISYGE----NAGESNGVVELAQVSSESQLAESEQAT 509
+S N+S K S++F+ DGGIS G+ AGESNGV+E SESQLAESEQAT
Sbjct: 476 TLNVAVSPNTSEKVSNDFSHGDGGISNGDCDVSTAGESNGVME--STPSESQLAESEQAT 533
Query: 510 YASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSV 569
YASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSV
Sbjct: 534 YASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSV 593
Query: 570 DNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLD 629
DNGKKI WNEDFHSKVLEAAKRLHLKEHTV+DGSGN FKLAAPVECKGIVGSDDRHYLLD
Sbjct: 594 DNGKKICWNEDFHSKVLEAAKRLHLKEHTVVDGSGNAFKLAAPVECKGIVGSDDRHYLLD 653
Query: 630 LMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGI 689
LMRVTPRDANY+GLGSRFCI+RPELI AFCQ EAA+ SK K EGEA PDSSE +GI
Sbjct: 654 LMRVTPRDANYSGLGSRFCILRPELIAAFCQAEAAKNSKTLPKSEGEAHATPDSSEVAGI 713
Query: 690 KESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAG 749
+E A E N S +Q+ +EGKVETV+EC SA S+S D ILFNPN FTEFKLAG
Sbjct: 714 EEQAKPEANFPVASTETQEIVQEGKVETVEECASAPSVGSESYDEILFNPNVFTEFKLAG 773
Query: 750 SQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGK 809
+ +EI DEENVRK S YLA VLPKFIQDLCTLEVSPMDGQTLTEALHAHGIN+RYIG+
Sbjct: 774 NPEEIENDEENVRKASSYLAATVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYIGR 833
Query: 810 VADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRG 869
VA+GTKHLPHLWDLCSNEIVVRSAKHI KDVLR+TED DLGP I+H FNCFFG+CQAV
Sbjct: 834 VAEGTKHLPHLWDLCSNEIVVRSAKHIFKDVLRDTEDQDLGPVISHFFNCFFGNCQAVGA 893
Query: 870 KVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEF 929
K ++ Q R Q K+ +GH SS KSSR Q RWK +ARK+ SS MNV+S+T+WS+++EF
Sbjct: 894 KGGSNGSQPRTQKKDQSGHHSSGKSSRGQTRWKG-ASARKNQSSSMNVSSETVWSEIQEF 952
Query: 930 AKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVK 989
AKLKYQFEL EDAR VKKVSV+RNLCQKVG++V ARKYD NAA PF+ +DIL+LQPVVK
Sbjct: 953 AKLKYQFELLEDARARVKKVSVIRNLCQKVGVTVAARKYDLNAAAPFQMTDILDLQPVVK 1012
Query: 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMV 1049
HSVP+CSEAK+LVE GK+QLAEG+LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMV
Sbjct: 1013 HSVPVCSEAKDLVETGKIQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMV 1072
Query: 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1109
LYHAGDMAGAI+QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL
Sbjct: 1073 LYHAGDMAGAIIQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1132
Query: 1110 LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169
LLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQTAVCY
Sbjct: 1133 LLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCY 1192
Query: 1170 HALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ 1229
HALAIAFNCMGAFKLSHQHEKKTY ILVKQLGEEDSRT+DSQNWMKTFKMRELQMN QKQ
Sbjct: 1193 HALAIAFNCMGAFKLSHQHEKKTYHILVKQLGEEDSRTRDSQNWMKTFKMRELQMNAQKQ 1252
Query: 1230 KGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETLPRGR 1289
KGQA NAAS QKAIDILKAHPDLI AFQA AA GGSG+S AS N SLNAA++GETLPRGR
Sbjct: 1253 KGQALNAASAQKAIDILKAHPDLIQAFQAAAATGGSGSSSASINKSLNAAIIGETLPRGR 1312
Query: 1290 GFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASVSGATD 1349
G DERAARAAAEVRKKA A+GLLIRPHG+P QALPPLTQLLNIIN SG TPDA + +
Sbjct: 1313 GVDERAARAAAEVRKKAAARGLLIRPHGVPVQALPPLTQLLNIIN-SGMTPDAVDNEEPN 1371
Query: 1350 DSKKEANGHSLAEPSDEKKDVSEPGREAQAPAGLGKGLGSLDAKKQKTKAKVAA 1403
+KKEANG P+D KD P +E AP GLGKGL SLD KKQKTK K A
Sbjct: 1372 GAKKEANGQPTDGPADSNKD-QIPAQEDPAPVGLGKGLTSLDNKKQKTKPKSVA 1424
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736213|emb|CBI24851.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2173 bits (5631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1453 (77%), Positives = 1243/1453 (85%), Gaps = 58/1453 (3%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSSE---KDSNSPSESVIVDANANGVPAVSES 57
MAGKSNKGRNR+ SH+AT NS++ V SS+ KD+ + S S A ANGV A +ES
Sbjct: 1 MAGKSNKGRNRRGSHSAT----NSSEPVGSSDSQMKDNVTASGSN--QAEANGVMATAES 54
Query: 58 TIAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAP 117
++V+ES+TAN+ D KQGE++LYPV+VKTQ EKLELQLNPGDSVMD+RQFLLDAP
Sbjct: 55 NSTNSEVKESETANTKDGSKQGEINLYPVSVKTQGGEKLELQLNPGDSVMDVRQFLLDAP 114
Query: 118 ETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRT 177
ETCFFTCYDL+LHTKDGS HHLEDYNEISEVADITTG C+LEMVAALYDDRSIRAHV+R
Sbjct: 115 ETCFFTCYDLLLHTKDGSVHHLEDYNEISEVADITTGDCSLEMVAALYDDRSIRAHVNRA 174
Query: 178 RDLLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLS 237
R+LLSLS+LHASLSTSLALQ+E +Q+ SSSGD KTEVPELDGLGFM++V+GSL LLS
Sbjct: 175 RELLSLSSLHASLSTSLALQHETSQTTASSSGDPVKTEVPELDGLGFMDNVAGSLSNLLS 234
Query: 238 SSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGN 297
S ++EIKCVESIVFSSFNP PS+RRLVGDLIYLDVVTLEG+K+CITGTTK+FYVNSSTGN
Sbjct: 235 SHSKEIKCVESIVFSSFNPPPSNRRLVGDLIYLDVVTLEGNKFCITGTTKVFYVNSSTGN 294
Query: 298 VLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLY 357
LDPR SK+ EATTLIGLLQKISSKFKKAFREIL+RKASAHPFENVQSLLPP+SWLGLY
Sbjct: 295 TLDPRLSKSTFEATTLIGLLQKISSKFKKAFREILERKASAHPFENVQSLLPPSSWLGLY 354
Query: 358 PVPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR-------- 405
PVPDH RDAARAE+ALTLSYGSELIGMQRDWNEELQSCREFP QE + R
Sbjct: 355 PVPDHIRDAARAEEALTLSYGSELIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVT 414
Query: 406 ------AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDII 459
AI+GAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVD+DL+ LS+KRASD I
Sbjct: 415 SDFVDAAISGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDADLDQLSKKRASDPI 474
Query: 460 SI--------NSSGKASHNFTSADGGISYGENAG-----ESNGVVELA-QVSSESQLAES 505
S NSS KAS++ G S GEN E NGV ELA VSSE+Q +S
Sbjct: 475 SKVESRNLSHNSSEKASNDLLHGTSGTSNGENCDGSMKLELNGVQELAPDVSSETQSIDS 534
Query: 506 EQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 565
EQATYASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL
Sbjct: 535 EQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 594
Query: 566 YGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRH 625
YGSVDNGKKI WNEDFHSKVLEAAK LHLKEHTV DGSGNVFKLAAPVECKGIVGSDDRH
Sbjct: 595 YGSVDNGKKICWNEDFHSKVLEAAKHLHLKEHTVRDGSGNVFKLAAPVECKGIVGSDDRH 654
Query: 626 YLLDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSE 685
YLLDLMRVTPRDANYTG GSRFCI+RPELITAFCQ E AE+ K ++K GE V DS +
Sbjct: 655 YLLDLMRVTPRDANYTGPGSRFCILRPELITAFCQAEVAERLKRKTKSGGEVHVASDSPK 714
Query: 686 ASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEF 745
AS + E + N SD SQD T EGK+E + SA ES++SC+ + FNPN FTEF
Sbjct: 715 ASSVDEQVRTDANDAVASD-SQDLTIEGKIEAAPDSASAHAESTESCEEMFFNPNVFTEF 773
Query: 746 KLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR 805
KLAGS +EIAADEENVRK S +L DVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGIN+R
Sbjct: 774 KLAGSPEEIAADEENVRKASSHLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVR 833
Query: 806 YIGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQ 865
YIGKVAD TKHLPHLW+LCSNEIVVRSAKHILKDVLR TEDHD+GPAI+H FNCFFGS Q
Sbjct: 834 YIGKVADRTKHLPHLWELCSNEIVVRSAKHILKDVLRNTEDHDIGPAISHFFNCFFGSYQ 893
Query: 866 AVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSD 925
AV K TA++ Q+R K+HAGH +SS+SS++QA+WK +ARK+ SSYMNV+SD+LW D
Sbjct: 894 AVGVKATANSTQARTSKKDHAGHHTSSRSSKAQAKWKAGASARKNQSSYMNVSSDSLWLD 953
Query: 926 LKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQ 985
+ EFAKLKY+FELPEDAR VKKVSV+RNLCQKVGI++ ARKYD ++A+PF+T+DILNLQ
Sbjct: 954 ILEFAKLKYEFELPEDARARVKKVSVIRNLCQKVGITIAARKYDLDSASPFQTADILNLQ 1013
Query: 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRY 1045
PVVKHSVP+CSEAK+LVE GKVQLAEG+L+EAYTLFSEAFSILQQVTGPMHREVANCCRY
Sbjct: 1014 PVVKHSVPVCSEAKDLVETGKVQLAEGMLTEAYTLFSEAFSILQQVTGPMHREVANCCRY 1073
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM
Sbjct: 1074 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1133
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQT
Sbjct: 1134 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQT 1193
Query: 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMN 1225
AVCYHALAIAFNCMGAFKLSHQHEKKTY+ILVKQLGEEDSRT+DSQNWMKTFKMRE+Q+N
Sbjct: 1194 AVCYHALAIAFNCMGAFKLSHQHEKKTYEILVKQLGEEDSRTRDSQNWMKTFKMREIQLN 1253
Query: 1226 VQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETL 1285
QKQKGQA NAAS QKAIDILK++PDL+HAFQA AAAGGSG+SGASA+ SLNAA++G+ +
Sbjct: 1254 AQKQKGQALNAASAQKAIDILKSNPDLMHAFQAAAAAGGSGSSGASASKSLNAAVIGDAV 1313
Query: 1286 PRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASVS 1345
PRGRG DERAARAAAEVRKKA A+GLLIRPHG+P QA PPLTQLLNIIN SG TPDA +
Sbjct: 1314 PRGRGIDERAARAAAEVRKKAAARGLLIRPHGVPVQAFPPLTQLLNIIN-SGMTPDAVDN 1372
Query: 1346 GATDDSKKEANGHSLAEPSDEK-----KDVSEP----------GREAQAPAGLGKGLGSL 1390
+ +KKEANGH EP+D K K EP G++ QAP GLGKGL SL
Sbjct: 1373 DEAEAAKKEANGHQGNEPADSKNEPPPKSGKEPADAKSEQPKSGKDDQAPVGLGKGLASL 1432
Query: 1391 DAKKQKTKAKVAA 1403
D KKQKTK KVAA
Sbjct: 1433 DGKKQKTKPKVAA 1445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487430|ref|XP_002263417.2| PREDICTED: protein KIAA0664 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2162 bits (5601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1123/1453 (77%), Positives = 1240/1453 (85%), Gaps = 61/1453 (4%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSSE---KDSNSPSESVIVDANANGVPAVSES 57
MAGKSNKGRNR+ SH+AT NS++ V SS+ KD+ + S S A ANGV A +ES
Sbjct: 1 MAGKSNKGRNRRGSHSAT----NSSEPVGSSDSQMKDNVTASGSN--QAEANGVMATAES 54
Query: 58 TIAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAP 117
++V+ES+TAN+ D KQGE++LYPV+VKTQ EKLELQLNPGDSVMD+RQFLLDAP
Sbjct: 55 NSTNSEVKESETANTKDGSKQGEINLYPVSVKTQGGEKLELQLNPGDSVMDVRQFLLDAP 114
Query: 118 ETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRT 177
ETCFFTCYDL+LHTKDGS HHLEDYNEISEVADITTG C+LEMVAALYDDRSIRAHV+R
Sbjct: 115 ETCFFTCYDLLLHTKDGSVHHLEDYNEISEVADITTGDCSLEMVAALYDDRSIRAHVNRA 174
Query: 178 RDLLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLS 237
R+LLSLS+LHASLSTSLALQ+E +Q+ S + KTEVPELDGLGFM++V+GSL LLS
Sbjct: 175 RELLSLSSLHASLSTSLALQHETSQTTAS---NPVKTEVPELDGLGFMDNVAGSLSNLLS 231
Query: 238 SSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGN 297
S ++EIKCVESIVFSSFNP PS+RRLVGDLIYLDVVTLEG+K+CITGTTK+FYVNSSTGN
Sbjct: 232 SHSKEIKCVESIVFSSFNPPPSNRRLVGDLIYLDVVTLEGNKFCITGTTKVFYVNSSTGN 291
Query: 298 VLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLY 357
LDPR SK+ EATTLIGLLQKISSKFKKAFREIL+RKASAHPFENVQSLLPP+SWLGLY
Sbjct: 292 TLDPRLSKSTFEATTLIGLLQKISSKFKKAFREILERKASAHPFENVQSLLPPSSWLGLY 351
Query: 358 PVPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR-------- 405
PVPDH RDAARAE+ALTLSYGSELIGMQRDWNEELQSCREFP QE + R
Sbjct: 352 PVPDHIRDAARAEEALTLSYGSELIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVT 411
Query: 406 ------AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDII 459
AI+GAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVD+DL+ LS+KRASD I
Sbjct: 412 SDFVDAAISGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDADLDQLSKKRASDPI 471
Query: 460 SI--------NSSGKASHNFTSADGGISYGENAG-----ESNGVVELA-QVSSESQLAES 505
S NSS KAS++ G S GEN E NGV ELA VSSE+Q +S
Sbjct: 472 SKVESRNLSHNSSEKASNDLLHGTSGTSNGENCDGSMKLELNGVQELAPDVSSETQSIDS 531
Query: 506 EQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 565
EQATYASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL
Sbjct: 532 EQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 591
Query: 566 YGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRH 625
YGSVDNGKKI WNEDFHSKVLEAAK LHLKEHTV DGSGNVFKLAAPVECKGIVGSDDRH
Sbjct: 592 YGSVDNGKKICWNEDFHSKVLEAAKHLHLKEHTVRDGSGNVFKLAAPVECKGIVGSDDRH 651
Query: 626 YLLDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSE 685
YLLDLMRVTPRDANYTG GSRFCI+RPELITAFCQ E AE+ K ++K GE V DS +
Sbjct: 652 YLLDLMRVTPRDANYTGPGSRFCILRPELITAFCQAEVAERLKRKTKSGGEVHVASDSPK 711
Query: 686 ASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEF 745
AS + E + N SD SQD T EGK+E + SA ES++SC+ + FNPN FTEF
Sbjct: 712 ASSVDEQVRTDANDAVASD-SQDLTIEGKIEAAPDSASAHAESTESCEEMFFNPNVFTEF 770
Query: 746 KLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR 805
KLAGS +EIAADEENVRK S +L DVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGIN+R
Sbjct: 771 KLAGSPEEIAADEENVRKASSHLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVR 830
Query: 806 YIGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQ 865
YIGKVAD TKHLPHLW+LCSNEIVVRSAKHILKDVLR TEDHD+GPAI+H FNCFFGS Q
Sbjct: 831 YIGKVADRTKHLPHLWELCSNEIVVRSAKHILKDVLRNTEDHDIGPAISHFFNCFFGSYQ 890
Query: 866 AVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSD 925
AV K TA++ Q+R K+HAGH +SS+SS++QA+WK +ARK+ SSYMNV+SD+LW D
Sbjct: 891 AVGVKATANSTQARTSKKDHAGHHTSSRSSKAQAKWKAGASARKNQSSYMNVSSDSLWLD 950
Query: 926 LKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQ 985
+ EFAKLKY+FELPEDAR VKKVSV+RNLCQKVGI++ ARKYD ++A+PF+T+DILNLQ
Sbjct: 951 ILEFAKLKYEFELPEDARARVKKVSVIRNLCQKVGITIAARKYDLDSASPFQTADILNLQ 1010
Query: 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRY 1045
PVVKHSVP+CSEAK+LVE GKVQLAEG+L+EAYTLFSEAFSILQQVTGPMHREVANCCRY
Sbjct: 1011 PVVKHSVPVCSEAKDLVETGKVQLAEGMLTEAYTLFSEAFSILQQVTGPMHREVANCCRY 1070
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM
Sbjct: 1071 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1130
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQT
Sbjct: 1131 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQT 1190
Query: 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMN 1225
AVCYHALAIAFNCMGAFKLSHQHEKKTY+ILVKQLGEEDSRT+DSQNWMKTFKMRE+Q+N
Sbjct: 1191 AVCYHALAIAFNCMGAFKLSHQHEKKTYEILVKQLGEEDSRTRDSQNWMKTFKMREIQLN 1250
Query: 1226 VQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETL 1285
QKQKGQA NAAS QKAIDILK++PDL+HAFQA AAAGGSG+SGASA+ SLNAA++G+ +
Sbjct: 1251 AQKQKGQALNAASAQKAIDILKSNPDLMHAFQAAAAAGGSGSSGASASKSLNAAVIGDAV 1310
Query: 1286 PRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASVS 1345
PRGRG DERAARAAAEVRKKA A+GLLIRPHG+P QA PPLTQLLNIIN SG TPDA +
Sbjct: 1311 PRGRGIDERAARAAAEVRKKAAARGLLIRPHGVPVQAFPPLTQLLNIIN-SGMTPDAVDN 1369
Query: 1346 GATDDSKKEANGHSLAEPSDEK-----KDVSEP----------GREAQAPAGLGKGLGSL 1390
+ +KKEANGH EP+D K K EP G++ QAP GLGKGL SL
Sbjct: 1370 DEAEAAKKEANGHQGNEPADSKNEPPPKSGKEPADAKSEQPKSGKDDQAPVGLGKGLASL 1429
Query: 1391 DAKKQKTKAKVAA 1403
D KKQKTK KVAA
Sbjct: 1430 DGKKQKTKPKVAA 1442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555293|ref|XP_003545968.1| PREDICTED: protein KIAA0664 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2097 bits (5432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1057/1444 (73%), Positives = 1182/1444 (81%), Gaps = 52/1444 (3%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSSEKDSNSPSESVIVDANANGVPAVSESTIA 60
MAGKS KGRNRK SH A++A+ V + + ES DA A ST+A
Sbjct: 1 MAGKSGKGRNRKGSHNASSASEPPVHSNVPVKDNVEVTLESAKTDA----ADAAGNSTVA 56
Query: 61 QADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETC 120
+V+E++T + KQG+L LYPV+VKTQ+ EKLELQLNPGDSVMD+RQFLLDAPETC
Sbjct: 57 NPEVKENETTTEGSQQKQGDLQLYPVSVKTQTGEKLELQLNPGDSVMDVRQFLLDAPETC 116
Query: 121 FFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDL 180
F TCYDL+LHTKDGSTHHLEDYNEISEVADITTGGC+LEMV A YDDRSIRAHVHRTR+L
Sbjct: 117 FITCYDLLLHTKDGSTHHLEDYNEISEVADITTGGCSLEMVPAFYDDRSIRAHVHRTREL 176
Query: 181 LSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSST 240
LSLS LHASLSTSLALQ E+AQ+K ++SGD K EVPELDGLG+MED+SGSLG LLSS
Sbjct: 177 LSLSNLHASLSTSLALQNEIAQNKGANSGDTLKPEVPELDGLGYMEDISGSLGNLLSSPL 236
Query: 241 QEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLD 300
++IKCVESIVFSSFNP PS+RRLVGDLIYLDVVTLEG+K+CITG+TKMFYVNSS+ N LD
Sbjct: 237 KDIKCVESIVFSSFNPPPSYRRLVGDLIYLDVVTLEGNKFCITGSTKMFYVNSSSANNLD 296
Query: 301 PRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVP 360
PRPSKA EATTL+ LLQKIS KFKKAFRE+L+ +A+AHPFENVQSLLPPNSWLGLYPVP
Sbjct: 297 PRPSKATFEATTLVALLQKISPKFKKAFREVLEGRAAAHPFENVQSLLPPNSWLGLYPVP 356
Query: 361 DHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR----------- 405
DH+RDAARAE+ALTL YG+E IGMQRDWNEELQSCREFP QE + R
Sbjct: 357 DHRRDAARAENALTLLYGNEPIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDF 416
Query: 406 ---AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRA------- 455
AINGAIGVIS CIPPINPTDPECFHMYVHNNIFFSFA+D+DL L +KR
Sbjct: 417 VDAAINGAIGVISGCIPPINPTDPECFHMYVHNNIFFSFAIDADLEKLPKKRVDANSKSW 476
Query: 456 --------SDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQ 507
SD SI G++ +GG ++ + NG VS E+QLAE+EQ
Sbjct: 477 SSSTLQSSSDKDSIPLHGESQ----VPNGGKDDSSSSEDLNGTEITQDVSPEAQLAENEQ 532
Query: 508 ATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYG 567
ATYASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYG
Sbjct: 533 ATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYG 592
Query: 568 SVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYL 627
SVDNGKKI WNEDFHSKV EAAK LHLKEH VLDGSGN+FKLAAPVECKGIVG DDRHYL
Sbjct: 593 SVDNGKKICWNEDFHSKVSEAAKCLHLKEHLVLDGSGNLFKLAAPVECKGIVGGDDRHYL 652
Query: 628 LDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEAS 687
LDL+RVTPRDANYTG GSRFCI+RPELITA+CQ +AAE K + K EA N ++E+
Sbjct: 653 LDLLRVTPRDANYTGPGSRFCILRPELITAYCQAQAAEALKSKEKNFQEA--NSLATESQ 710
Query: 688 GIKESANHEVNVTATSDVSQ-DATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFK 746
E+ + +D + D+TKE K E V+E S ++SD C+ I+FNPN FTEFK
Sbjct: 711 NAAEADQLVNDSQNAADADKLDSTKEEKAEDVKELASVIAKASDGCEDIVFNPNVFTEFK 770
Query: 747 LAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRY 806
LAGS +EIAADE+NVRKVS YL DVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGIN+RY
Sbjct: 771 LAGSPEEIAADEDNVRKVSQYLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRY 830
Query: 807 IGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQA 866
IG+VA GTKHLPHLWDLC++EIVVRSAKHI+KD+LRETEDHDL PA++H NC FGSCQA
Sbjct: 831 IGRVAGGTKHLPHLWDLCNSEIVVRSAKHIIKDLLRETEDHDLAPAVSHFLNCLFGSCQA 890
Query: 867 VRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDL 926
GKV A++ QS KEHAG S K S+ ARWK R + RK Y +++S+ LW D+
Sbjct: 891 PSGKVPANSTQSNTPKKEHAGQRSPGKHSKGLARWKGRASLRKTQPLYASISSEALWLDI 950
Query: 927 KEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQP 986
+EFA +KY+FELP DAR VKK+S++RNLC KVGI+V ARKYD ++ATPF+TSD+L+L+P
Sbjct: 951 QEFAMVKYKFELPADARSRVKKISLIRNLCLKVGITVAARKYDLSSATPFQTSDVLDLRP 1010
Query: 987 VVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYL 1046
VVKHSVP CSEAK LVE GK+QLAEG+LSEAYTLFSEAFSILQQVTGPMHREVANCCRYL
Sbjct: 1011 VVKHSVPACSEAKELVETGKLQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYL 1070
Query: 1047 AMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMS 1106
AMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMS
Sbjct: 1071 AMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMS 1130
Query: 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166
RA LLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQTA
Sbjct: 1131 RAFLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTA 1190
Query: 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNV 1226
VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGE+DSRT+DSQNWM TFKMRELQMN
Sbjct: 1191 VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEDDSRTRDSQNWMNTFKMRELQMNA 1250
Query: 1227 QKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETLP 1286
QKQKGQ NAAS QKAIDILKAHPDL+HAFQA A AGGSG+SGASAN SLNAA++GE L
Sbjct: 1251 QKQKGQTLNAASAQKAIDILKAHPDLMHAFQAAAIAGGSGSSGASANKSLNAAVMGEALS 1310
Query: 1287 RGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASVSG 1346
RGRG DERAARAAAEVRKKA A+GL +RPHG+P Q+LPPLTQLLNIIN SG TPDA +G
Sbjct: 1311 RGRGIDERAARAAAEVRKKAAARGLSVRPHGVPVQSLPPLTQLLNIIN-SGVTPDAVDNG 1369
Query: 1347 ATDDSKKEANGHSLAEPSDEKKDVSEPGRE-------AQAPAGLGKGLGSLDAKKQKTKA 1399
D +KKEAN ++ D KK + P +E + +P GLGKGL SLDAKKQK+K
Sbjct: 1370 NADGAKKEANDIPPSDSIDAKKGQTMPVQEQEHAPVGSHSPVGLGKGLSSLDAKKQKSKP 1429
Query: 1400 KVAA 1403
K A
Sbjct: 1430 KAGA 1433
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528568|ref|XP_003532873.1| PREDICTED: protein KIAA0664 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2086 bits (5404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1062/1448 (73%), Positives = 1195/1448 (82%), Gaps = 51/1448 (3%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSSEKDSNSPSESVIVDANANGVPAVSESTIA 60
MAGKS KGRNRK SH A++A+ ++ V + + ES DA +S +A
Sbjct: 1 MAGKSGKGRNRKGSHNASSASESAVHSDVPVKDNVEVTLESAKADAAEVAAGG--DSIVA 58
Query: 61 QADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETC 120
+V+E++TA + KQG+L LYPV+VKTQ+ EKLELQLNPGDSVMD+RQFLLDAPETC
Sbjct: 59 NPEVKENETATEGSQQKQGDLQLYPVSVKTQTGEKLELQLNPGDSVMDVRQFLLDAPETC 118
Query: 121 FFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDL 180
F TCYDL+LHTKDGSTHHLEDYNEISEVADITTGGC+LEMV+A Y+DRSIRAHVHRTR+L
Sbjct: 119 FITCYDLLLHTKDGSTHHLEDYNEISEVADITTGGCSLEMVSAFYEDRSIRAHVHRTREL 178
Query: 181 LSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSST 240
LSLS LHASLSTSLALQ E+A +K ++SGD K EVPELDGLG+MED++GSLG LLSS
Sbjct: 179 LSLSNLHASLSTSLALQNEIAHNKSANSGDTLKPEVPELDGLGYMEDIAGSLGNLLSSPL 238
Query: 241 QEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLD 300
++IKCVESIVFSSFNP PS+RRLVGDLIYLDV+TLEG+K+CITG+TKMFYVNSS+ N LD
Sbjct: 239 KDIKCVESIVFSSFNPPPSYRRLVGDLIYLDVITLEGNKFCITGSTKMFYVNSSSANNLD 298
Query: 301 PRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVP 360
P+PSKA EATTL+ LLQKIS KFKKAFRE+L+ +++AHPFENVQSLLPPNSWLGLYPVP
Sbjct: 299 PKPSKATFEATTLVALLQKISPKFKKAFREVLEGRSAAHPFENVQSLLPPNSWLGLYPVP 358
Query: 361 DHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR----------- 405
DH+RDAARAE+ALTL YG+E IGMQRDWNEELQSCREFP QE + R
Sbjct: 359 DHRRDAARAENALTLLYGNEPIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDF 418
Query: 406 ---AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRA------- 455
AINGAIGVIS CIPPINPTDPECFHMYVHNNIFFSFA+D+DL LS+KR
Sbjct: 419 VDAAINGAIGVISGCIPPINPTDPECFHMYVHNNIFFSFAIDADLEKLSKKRVDANSKTW 478
Query: 456 SDIISINSSGKAS---HNFTSA-DGGISYGENAGESNGVVELAQVSSESQLAESEQATYA 511
S S +SS KAS H + +GG G ++ + NG VS E+QLAE+EQATYA
Sbjct: 479 SSGNSQSSSDKASTLLHGESQVPNGGKDDGSSSEDLNGTEITQDVSPEAQLAENEQATYA 538
Query: 512 SANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDN 571
SANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDN
Sbjct: 539 SANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDN 598
Query: 572 GKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLM 631
GKKI WNEDFHSKV EAAKRLHLKEH VLDGSGN+FKLAAPVECKGIVG DDRHYLLDL+
Sbjct: 599 GKKICWNEDFHSKVSEAAKRLHLKEHLVLDGSGNLFKLAAPVECKGIVGGDDRHYLLDLL 658
Query: 632 RVTPRDANYTGLGSRFCIMRPELITAFCQVEAAE--KSK-------------GQSKPEGE 676
RVTPRDANYTG GSRFCI+R ELI+A+C+ +AAE KSK Q+ E +
Sbjct: 659 RVTPRDANYTGPGSRFCILRSELISAYCRAQAAEILKSKEKNPQEADNLVTDSQNAAEAD 718
Query: 677 AIVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGIL 736
+VN DS A+ + N N+T + D+TKE K E V+ S + ++SD C+ I+
Sbjct: 719 HLVN-DSQNAADADQLVNDSQNLTDADKL--DSTKEEKTEDVKVLASVTTKASDGCEDIV 775
Query: 737 FNPNAFTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEA 796
FNPN FTEFKLAGS +EIAADE+NVRKVS YL DVVLPKFIQDLCTLEVSPMDGQTLTEA
Sbjct: 776 FNPNVFTEFKLAGSPEEIAADEDNVRKVSQYLTDVVLPKFIQDLCTLEVSPMDGQTLTEA 835
Query: 797 LHAHGINIRYIGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHL 856
LHAHGIN+RYIGKVA GTKHLPHLWDLC+NEIVVRSAKHI+KD+LRETEDHDL PA++H
Sbjct: 836 LHAHGINVRYIGKVAGGTKHLPHLWDLCNNEIVVRSAKHIIKDLLRETEDHDLAPALSHF 895
Query: 857 FNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMN 916
NC FGSCQA GKV A+ QS+ KEHAG S K S+ QARWK R + RK Y +
Sbjct: 896 LNCLFGSCQAPGGKVPANFTQSKTPRKEHAGQRSPGKHSKGQARWKGRASLRKTQPLYAS 955
Query: 917 VNSDTLWSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPF 976
++S+ LWSD++EFA +KY+FELP+DAR KK+SV+RNLC KVG++V ARKYD ++ATPF
Sbjct: 956 ISSEVLWSDIQEFAMVKYKFELPDDARSHAKKISVIRNLCLKVGVTVAARKYDLSSATPF 1015
Query: 977 ETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH 1036
+TSD+L+++PVVKHSVP CSEAK LVE GK+QLAEG+LSEAYTLFSEAFSILQQVTGPMH
Sbjct: 1016 QTSDVLDIRPVVKHSVPSCSEAKELVETGKLQLAEGMLSEAYTLFSEAFSILQQVTGPMH 1075
Query: 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN 1096
REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN
Sbjct: 1076 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN 1135
Query: 1097 QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156
QTELALRHMSRALLLLS SSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNER
Sbjct: 1136 QTELALRHMSRALLLLSFSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNER 1195
Query: 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKT 1216
LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGE+DSRT+DSQNWM T
Sbjct: 1196 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEDDSRTRDSQNWMNT 1255
Query: 1217 FKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSL 1276
FKMRELQMN QKQKGQA NAAS QKAIDILKAHPDLIHAFQA A AGGSG+SGASAN SL
Sbjct: 1256 FKMRELQMNAQKQKGQALNAASAQKAIDILKAHPDLIHAFQAAAVAGGSGSSGASANKSL 1315
Query: 1277 NAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSS 1336
NAA++GE LPRGRG DERAARAAAEVR+KA A+GL+IRPHG+P QALPPLTQLLNIIN
Sbjct: 1316 NAAVMGEALPRGRGIDERAARAAAEVRRKAAARGLMIRPHGVPVQALPPLTQLLNIIN-P 1374
Query: 1337 GATPDASVSGATDDSKKEANGHSLAEPSDEKKDVSEP-GREAQAPAGLGKGLGSLDAKKQ 1395
G T DA +G D KKEAN ++ D KK + P ++ QAP GLGKGL SLDAKKQ
Sbjct: 1375 GVTSDAVDNGNADRVKKEANDIPPSDLIDTKKGQTTPVQQQEQAPVGLGKGLSSLDAKKQ 1434
Query: 1396 KTKAKVAA 1403
K+K K A
Sbjct: 1435 KSKPKTGA 1442
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463775|ref|XP_004149607.1| PREDICTED: clustered mitochondria protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2068 bits (5359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1439 (74%), Positives = 1189/1439 (82%), Gaps = 67/1439 (4%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSS--EKDSNSPSESVIVDANANGVPAVSEST 58
MAGKSNK +NRK +H A NS++ VV S KD N+ ES A V + ES+
Sbjct: 1 MAGKSNKLKNRKGAHHA----PNSSEVVVGSGASKDVNTALES-----KAELVESAEESS 51
Query: 59 IAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE 118
+AD++ES+TA +PKQGELHLYP+ VKTQS EKLELQLNPGDS+MDIRQFLLDAPE
Sbjct: 52 DIKADIKESETATPESQPKQGELHLYPICVKTQSGEKLELQLNPGDSIMDIRQFLLDAPE 111
Query: 119 TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTR 178
TC+FTCYDL+LHTKDGS H LEDYNE+SEVADIT GGC+LEMV ALYDDRSIRAHVHRTR
Sbjct: 112 TCYFTCYDLLLHTKDGSVHQLEDYNEVSEVADITIGGCSLEMVPALYDDRSIRAHVHRTR 171
Query: 179 DLLSLSTLHASLSTSLALQYEMAQ-SKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLS 237
D+LSLSTLHASLSTSLA+QYE+AQ + +++GD AKTEVPELD LGFMEDVSGSLG LS
Sbjct: 172 DMLSLSTLHASLSTSLAVQYELAQKNAAATTGDTAKTEVPELDSLGFMEDVSGSLGSFLS 231
Query: 238 SSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGN 297
SS++E++CVESIVFSSFNP PS+RRL GDLIYLDV+TLEG+K+CITGT K FYVNSSTGN
Sbjct: 232 SSSKEVRCVESIVFSSFNPPPSYRRLTGDLIYLDVITLEGNKFCITGTAKHFYVNSSTGN 291
Query: 298 VLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLY 357
VLDP+P K EA+TL+GLLQKISSKFKKAFRE+L+++ASAHPFENVQSLLPPNSWLG Y
Sbjct: 292 VLDPKPYKTAYEASTLVGLLQKISSKFKKAFREVLEQRASAHPFENVQSLLPPNSWLGAY 351
Query: 358 PVPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR-------- 405
PVPDHKRDAARAEDALTLS+GSELIGMQRDWNEELQSCREFP QE + R
Sbjct: 352 PVPDHKRDAARAEDALTLSFGSELIGMQRDWNEELQSCREFPHTTPQERILRDRALYKVT 411
Query: 406 ------AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASD-- 457
AI+GA+GVISRCIPPINPTDPECFHMYVHNNIFFSFAVD DL H+S++ ASD
Sbjct: 412 SDFVDAAISGAVGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDVDLEHISKRSASDGN 471
Query: 458 --IISINS----SGKASHNFTSADGGISYGENAG-----ESNGVVELA-QVSSESQLAES 505
+ +S S KA N D +S GE E NG+ E + S+E+QL ES
Sbjct: 472 SKVQGTSSLHGLSEKAIDNSLHVDIRLSNGERCNSSCTSEVNGITESSPDGSTETQLTES 531
Query: 506 EQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 565
EQATYASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL
Sbjct: 532 EQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLL 591
Query: 566 YGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRH 625
YGSVDNGKKI+WNEDFH+KVLEAAKRLHLKEH+VLD SGNVFKLAAPVECKGIVGSD RH
Sbjct: 592 YGSVDNGKKINWNEDFHAKVLEAAKRLHLKEHSVLDASGNVFKLAAPVECKGIVGSDGRH 651
Query: 626 YLLDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSE 685
YLLDLMRVTPRDANYTG GSRFCI+RPELITAFCQ +AA++ K + + EG V DS E
Sbjct: 652 YLLDLMRVTPRDANYTGPGSRFCILRPELITAFCQAQAADQLKSKVESEGTTSV-VDSPE 710
Query: 686 ASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEF 745
+ A + V+A + D +K+ K E ++E SS S + I FNPN TEF
Sbjct: 711 VA----DAGKQEEVSAVASDGNDTSKDEKTEDLKE-------SSLSQNDIFFNPNVLTEF 759
Query: 746 KLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR 805
KLAGS +EI ADE+NVR S +L +VVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR
Sbjct: 760 KLAGSPEEIEADEDNVRGASEFLTNVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIR 819
Query: 806 YIGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQ 865
YIGKVA+GT+HLPHLWDLCSNEI VRSAKHILKDVLR+TEDHDLG A++H FNCFFGSCQ
Sbjct: 820 YIGKVAEGTRHLPHLWDLCSNEIAVRSAKHILKDVLRDTEDHDLGMALSHFFNCFFGSCQ 879
Query: 866 AVRGKVTASNVQSRNQMKEHAG-HPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWS 924
+ K ASN QSR K+ G H SS K SR QARWK R A+K SSYM+VNSD+LW+
Sbjct: 880 VLATKA-ASNTQSRTPKKDQMGHHHSSGKVSRGQARWKGRTHAKKRQSSYMSVNSDSLWA 938
Query: 925 DLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNL 984
D++ FAKLKYQF+LP+D + VKKVSV+RNLC KVGI+V ARKYD ++A PF+TSDILNL
Sbjct: 939 DIRGFAKLKYQFDLPDDVQSCVKKVSVVRNLCHKVGITVAARKYDLSSAAPFQTSDILNL 998
Query: 985 QPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCR 1044
QPV+KHSVP+CSEAK+LVE GK++LAEG+LSEAY LFSEA SILQQVTGPMHREVANCCR
Sbjct: 999 QPVIKHSVPVCSEAKDLVETGKLKLAEGMLSEAYALFSEAVSILQQVTGPMHREVANCCR 1058
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
YLAMVLYHAGDMAGAI+QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH
Sbjct: 1059 YLAMVLYHAGDMAGAIVQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1118
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164
MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQ
Sbjct: 1119 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQ 1178
Query: 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQM 1224
TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRT+DS+NWMKTFKMRE+QM
Sbjct: 1179 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTRDSENWMKTFKMREVQM 1238
Query: 1225 NVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASA-NNSLNAALLGE 1283
N QKQKGQA NAAS QKAID+LK+HPDLI AFQA A AGG S + N SLNAA++GE
Sbjct: 1239 NAQKQKGQALNAASAQKAIDLLKSHPDLIQAFQAAAVAGGGSGSSGAPMNKSLNAAIIGE 1298
Query: 1284 TLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDAS 1343
LPRGRG DERAARAAAEVRKKA A+GLLIR G+P QA+PPLTQLLNIIN SG T +A
Sbjct: 1299 NLPRGRGVDERAARAAAEVRKKAAARGLLIRQPGVPVQAMPPLTQLLNIIN-SGMTSEAV 1357
Query: 1344 VSGATDDSKKEANGHSLAEPSDEKKDVSEPGREAQAPAGLGKGLGSLDAKKQKTKAKVA 1402
+ TD KKE N PS+ + G++ QAP GLG GL SLDAKKQK K+K A
Sbjct: 1358 DNSETDGEKKEVN----TNPSN---NTLVDGKQEQAPVGLGSGLASLDAKKQKPKSKAA 1409
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501567|ref|XP_004161405.1| PREDICTED: LOW QUALITY PROTEIN: clustered mitochondria protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2062 bits (5343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1438 (73%), Positives = 1186/1438 (82%), Gaps = 69/1438 (4%)
Query: 1 MAGKSNKGRNRKVSHAATAAAANSADQVVSS--EKDSNSPSESVIVDANANGVPAVSEST 58
MAGKSNK +NRK +H A NS++ VV S KD N+ ES A V + ES+
Sbjct: 1 MAGKSNKLKNRKGAHHA----PNSSEVVVGSGASKDVNTALES-----KAELVESAEESS 51
Query: 59 IAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE 118
+AD++ES+TA +PKQGELHLYP+ VKTQS EKLELQLNPGDS+MDIRQFLLDAPE
Sbjct: 52 DIKADIKESETATPESQPKQGELHLYPICVKTQSGEKLELQLNPGDSIMDIRQFLLDAPE 111
Query: 119 TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTR 178
TC+FTCYDL+LHTKDGS H LEDYNE+SEVADIT GGC+LEMV ALYDDRSIRAHVHRTR
Sbjct: 112 TCYFTCYDLLLHTKDGSVHQLEDYNEVSEVADITIGGCSLEMVPALYDDRSIRAHVHRTR 171
Query: 179 DLLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSS 238
D+LSLSTLHASLSTSLA+QYE+AQ ++ D AKTEVPELD LGFMEDVSGSLG LSS
Sbjct: 172 DMLSLSTLHASLSTSLAVQYELAQK---NAPDTAKTEVPELDSLGFMEDVSGSLGSFLSS 228
Query: 239 STQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNV 298
S++E++CVESIVFSSFNP PS+RRL GDLIYLDV+TLEG+K+CITGT K FYVNSSTGNV
Sbjct: 229 SSKEVRCVESIVFSSFNPPPSYRRLTGDLIYLDVITLEGNKFCITGTAKHFYVNSSTGNV 288
Query: 299 LDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYP 358
LDP+P K EA+TL+GLLQKISSKFKKAFRE+L+++ASAHPFENVQSLLPPNSWLG YP
Sbjct: 289 LDPKPYKTAYEASTLVGLLQKISSKFKKAFREVLEQRASAHPFENVQSLLPPNSWLGAYP 348
Query: 359 VPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFP----QELLRR--------- 405
VPDHKRDAARAEDALTLS+GSELIGMQRDWNEELQSCREFP QE + R
Sbjct: 349 VPDHKRDAARAEDALTLSFGSELIGMQRDWNEELQSCREFPHTTPQERILRDRALYKVTS 408
Query: 406 -----AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASD--- 457
AI+GA+GVISRCIPPINPTDPECFHMYVHNNIFFSFAVD DL H+S++ ASD
Sbjct: 409 DFVDAAISGAVGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDVDLEHISKRSASDGNS 468
Query: 458 -IISINS----SGKASHNFTSADGGISYGENAG-----ESNGVVELA-QVSSESQLAESE 506
+ +S S KA N D +S GE E NG+ E + S+E+QL ESE
Sbjct: 469 KVQGTSSLHGLSEKAIDNSLHVDIRLSNGERCNSSCTSEVNGITESSPDGSTETQLTESE 528
Query: 507 QATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLY 566
QATYASANNDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLY
Sbjct: 529 QATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLY 588
Query: 567 GSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHY 626
GSVDNGKKI+WNEDFH+KVLEAAKRLHLKEH+VLD SGNVFKLAAPVECKGIVGSD RHY
Sbjct: 589 GSVDNGKKINWNEDFHAKVLEAAKRLHLKEHSVLDASGNVFKLAAPVECKGIVGSDGRHY 648
Query: 627 LLDLMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEA 686
LLDLMRVTPRDANYTG GSRFCI+RPELITAFCQ +AA++ K + + EG V DS E
Sbjct: 649 LLDLMRVTPRDANYTGPGSRFCILRPELITAFCQAQAADQLKSKVESEGTTSV-VDSPEV 707
Query: 687 SGIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFK 746
+ A + V+A + D +K+ K E ++E SS S + I FNPN TEFK
Sbjct: 708 A----DAGKQEEVSAVASDGNDTSKDEKTEDLKE-------SSLSQNDIXFNPNVLTEFK 756
Query: 747 LAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRY 806
LAGS +EI ADE+NVR S +L +VVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRY
Sbjct: 757 LAGSPEEIEADEDNVRGASEFLTNVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRY 816
Query: 807 IGKVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQA 866
IGKVA+GT+HLPHLWDLCSNEI VRSAKHILKDVLR+TEDHDLG A++H FNCFFGSCQ
Sbjct: 817 IGKVAEGTRHLPHLWDLCSNEIAVRSAKHILKDVLRDTEDHDLGMALSHFFNCFFGSCQV 876
Query: 867 VRGKVTASNVQSRNQMKEHAG-HPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSD 925
+ K ASN QSR K+ G H SS K SR QARWK R A+K SSYM+VNSD+LW+D
Sbjct: 877 LATKA-ASNTQSRTPKKDQMGHHHSSGKVSRGQARWKGRTHAKKRQSSYMSVNSDSLWAD 935
Query: 926 LKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQ 985
++ FAKLKYQF+LP+D + VKKVSV+RNLC KVGI+V ARKYD ++A PF+TSDILNLQ
Sbjct: 936 IRGFAKLKYQFDLPDDVQSCVKKVSVVRNLCHKVGITVAARKYDLSSAAPFQTSDILNLQ 995
Query: 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRY 1045
PV+KHSVP+CSEAK+LVE GK++LAEG+LSEAY LFSEA SILQQVTGPMHREVANCCRY
Sbjct: 996 PVIKHSVPVCSEAKDLVETGKLKLAEGMLSEAYALFSEAVSILQQVTGPMHREVANCCRY 1055
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
LAMVLYHAGDMAGAI+QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM
Sbjct: 1056 LAMVLYHAGDMAGAIVQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1115
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQT
Sbjct: 1116 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQT 1175
Query: 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMN 1225
AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRT+DS+NWMKTFKMRE+QMN
Sbjct: 1176 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTRDSENWMKTFKMREVQMN 1235
Query: 1226 VQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASA-NNSLNAALLGET 1284
QKQKGQA NAAS QKAID+LK+HPDLI AFQA A AGG S + N SLNAA++GE
Sbjct: 1236 AQKQKGQALNAASAQKAIDLLKSHPDLIQAFQAAAVAGGGSGSSGAPMNKSLNAAIIGEN 1295
Query: 1285 LPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASV 1344
LPRGRG DERAARAAAEVRKKA A+GLLIR G+P QA+PPLTQLLNIIN SG T +A
Sbjct: 1296 LPRGRGVDERAARAAAEVRKKAAARGLLIRQPGVPVQAMPPLTQLLNIIN-SGMTSEAVD 1354
Query: 1345 SGATDDSKKEANGHSLAEPSDEKKDVSEPGREAQAPAGLGKGLGSLDAKKQKTKAKVA 1402
+ TD KKE N PS+ + G++ QAP GLG GL SLDAKKQK K+K A
Sbjct: 1355 NSETDGEKKEVN----TNPSN---NTLVDGKQEQAPVGLGSGLASLDAKKQKPKSKAA 1405
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055259|ref|XP_002298448.1| predicted protein [Populus trichocarpa] gi|222845706|gb|EEE83253.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2061 bits (5341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1350 (77%), Positives = 1146/1350 (84%), Gaps = 53/1350 (3%)
Query: 79 GELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHH 138
G+LHLYPV+VK+QS EKLELQLNPGDSVMD+RQFLLDAPETCF+TCYDL+LHTKDGSTH
Sbjct: 4 GDLHLYPVSVKSQSGEKLELQLNPGDSVMDVRQFLLDAPETCFYTCYDLLLHTKDGSTHQ 63
Query: 139 LEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLSLSTLHASLSTSLALQY 198
LEDYNEISEVADIT+GGC+LEMV A YDDRSIRAHVH TR+LLSLSTLHASLSTSLAL+Y
Sbjct: 64 LEDYNEISEVADITSGGCSLEMVTAPYDDRSIRAHVHHTRELLSLSTLHASLSTSLALEY 123
Query: 199 EMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPSP 258
E AQ+K S D KTEVPELDG+GFMEDV+GS+GKLLS T+EIKCV+SIVFSSFNP P
Sbjct: 124 ETAQNKAPGS-DTGKTEVPELDGMGFMEDVAGSVGKLLSFPTKEIKCVDSIVFSSFNPPP 182
Query: 259 SHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLLQ 318
SHRRLVGDLIYLD VTLEG++YC+TGT KMFYVNSSTGNVLDPRPSKA SEATTL+GLLQ
Sbjct: 183 SHRRLVGDLIYLDAVTLEGNRYCVTGTIKMFYVNSSTGNVLDPRPSKATSEATTLVGLLQ 242
Query: 319 KISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSYG 378
KIS FK+AFREIL+RK SAHPFENVQSLLPPNSWLGLYPVPDH+ DAARAEDALTLSYG
Sbjct: 243 KISPTFKRAFREILERKGSAHPFENVQSLLPPNSWLGLYPVPDHRPDAARAEDALTLSYG 302
Query: 379 SELIGMQRDWNEELQSCREFP----QELLRR--------------AINGAIGVISRCIPP 420
SELIGMQRDWNEELQSCREFP QE + R AI GAIGVI RCIPP
Sbjct: 303 SELIGMQRDWNEELQSCREFPHSTPQERILRDRALYKVTSDFVDAAIKGAIGVIGRCIPP 362
Query: 421 INPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIIS--------INSSGKASHNFT 472
INPTDPECFHMYVHNNIFFSFAVDSDL LS+K SD S I SS KA+ N
Sbjct: 363 INPTDPECFHMYVHNNIFFSFAVDSDLEQLSKKCNSDASSKTENTSSSIKSSEKATTNGV 422
Query: 473 SADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLH 532
DG + V+EL SSE QLAESEQATYASANNDLKGTK+YQEADVPGL+
Sbjct: 423 KCDGSTAE---------VMELPLESSEPQLAESEQATYASANNDLKGTKSYQEADVPGLY 473
Query: 533 NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRL 592
NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKI WNEDFHSKV+EAAKRL
Sbjct: 474 NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVVEAAKRL 533
Query: 593 HLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGSRFCIMRP 652
HLKEHTVLDGSGN FKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYT GSRFCI+RP
Sbjct: 534 HLKEHTVLDGSGNAFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTRPGSRFCILRP 593
Query: 653 ELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKE 712
ELITAFCQ EA +SK + K EG V DS+E +G + E ++ Q+ KE
Sbjct: 594 ELITAFCQAEAVARSKSRPKSEGGVQVAADSTEVAGADKQVKSEEAAVPINN--QEIAKE 651
Query: 713 GKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEIAADEENVRKVSLYLADVV 772
GK +TV+E SS+S + ILFNPN FTEFKL+G+ +EIA DEENV+KVS YLA+ V
Sbjct: 652 GKADTVEESAPPPAGSSESLEEILFNPNVFTEFKLSGNPEEIAVDEENVKKVSSYLANTV 711
Query: 773 LPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLPHLWDLCSNEIVVRS 832
LPKF+QDLCTLEVSPMDGQTLTEALHAHGIN+RY+GKVA+GTKHLPHLWDLCSNEI+VRS
Sbjct: 712 LPKFVQDLCTLEVSPMDGQTLTEALHAHGINVRYMGKVAEGTKHLPHLWDLCSNEIIVRS 771
Query: 833 AKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSS 892
AKH+LKD+LR+T+D+ LGPAI+H +NCFFGSCQAV KV+ +N SR KE A + SS
Sbjct: 772 AKHLLKDLLRDTDDNHLGPAISHFYNCFFGSCQAVGLKVSTNNSPSRATKKEQASNHSSR 831
Query: 893 KSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDARLWVKKVSVM 952
KSSR Q RWK +ARK+ SSYMNV+S+TLWSDL+E AKLKY+FELPEDARL VKKVSV+
Sbjct: 832 KSSRGQTRWKG-ASARKNQSSYMNVSSETLWSDLQELAKLKYEFELPEDARLQVKKVSVI 890
Query: 953 RNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEG 1012
RNLCQKVGI++ ARKYD + A PF+ SDILNLQPVVKHSVP+CSEAK+LVE GKVQLAEG
Sbjct: 891 RNLCQKVGITIAARKYDLHTAMPFQMSDILNLQPVVKHSVPLCSEAKDLVETGKVQLAEG 950
Query: 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072
+LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI+QQHKELIINER
Sbjct: 951 MLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIIQQHKELIINER 1010
Query: 1073 CLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132
CLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM
Sbjct: 1011 CLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1070
Query: 1133 MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH------ 1186
MYQDIGKM+TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH
Sbjct: 1071 MYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQASFAC 1130
Query: 1187 -QHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDI 1245
QHEKKTYDILVKQLGEEDSRT+DSQNWM TFK RELQMN QKQKGQ NA S+QKAIDI
Sbjct: 1131 AQHEKKTYDILVKQLGEEDSRTRDSQNWMSTFKARELQMNAQKQKGQTLNATSSQKAIDI 1190
Query: 1246 LK--AHPDLIHAFQAVAAAGGSGNSGASA--NNSLNAALLGETLPRGRGFDERAARAAAE 1301
LK A+PDL+HAFQA AAAGGSG+ +S+ N SLNAA++GE LPRGRG DERAARAAAE
Sbjct: 1191 LKASANPDLLHAFQAAAAAGGSGSGSSSSSINKSLNAAIVGEALPRGRGVDERAARAAAE 1250
Query: 1302 VRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASVSGATDDSKKEANGHSLA 1361
RKKA A+GLLIRPHG+P QALPP TQLLNIIN SGATPD+ + EANG S
Sbjct: 1251 ARKKAAARGLLIRPHGVPVQALPPFTQLLNIIN-SGATPDSINNDEAGGVNNEANGQSSN 1309
Query: 1362 EPSDEKKDVSEPGREAQAPAGLGKGLGSLD 1391
+P D++KD + G++ QAP GLGKGL SLD
Sbjct: 1310 DPVDKQKDQTS-GKD-QAPIGLGKGLKSLD 1337
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106035|ref|XP_002314020.1| predicted protein [Populus trichocarpa] gi|222850428|gb|EEE87975.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2053 bits (5318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1374 (76%), Positives = 1143/1374 (83%), Gaps = 85/1374 (6%)
Query: 79 GELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHH 138
G+LHLYPV+VKTQS+EKLELQLNPGDSVMD+RQFLLDAPETCFFTCYDL+LHTKDGST
Sbjct: 1 GDLHLYPVSVKTQSSEKLELQLNPGDSVMDVRQFLLDAPETCFFTCYDLLLHTKDGSTLQ 60
Query: 139 LEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLSLSTLHASLSTSLALQY 198
+EDYNEISEVADIT+GGC+LEMVAA YDDRSIRAHVHRTR+LLSLSTLHASLSTSLAL+Y
Sbjct: 61 IEDYNEISEVADITSGGCSLEMVAAPYDDRSIRAHVHRTRELLSLSTLHASLSTSLALEY 120
Query: 199 EMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFSSFNPSP 258
E AQ+K +G KTEVPELDG+GFMEDV+GS+GKLLS +EI CV+SI+FSSFNP P
Sbjct: 121 EKAQNKALDTG---KTEVPELDGMGFMEDVAGSVGKLLSFPAKEIMCVDSIIFSSFNPPP 177
Query: 259 SHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLLQ 318
SHRRLVGDLIYLDV+TLEG+KYCITGTTKMFYVNSSTGNVLDPRPSKA SEATTL+GLLQ
Sbjct: 178 SHRRLVGDLIYLDVITLEGNKYCITGTTKMFYVNSSTGNVLDPRPSKATSEATTLVGLLQ 237
Query: 319 KISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSYG 378
+IS KFKKA REIL+ K SAHPFENVQSLLPP SWLGLYPVPDH+RDAARAEDALTLSYG
Sbjct: 238 RISPKFKKALREILEHKGSAHPFENVQSLLPPCSWLGLYPVPDHRRDAARAEDALTLSYG 297
Query: 379 SELIGMQRDWNEELQSCREFP----QELLRR--------------AINGAIGVISRCIPP 420
SELIGMQRDWNEELQSCREFP QE + R A+ GAIGVI+RCIPP
Sbjct: 298 SELIGMQRDWNEELQSCREFPHSAPQERILRDRALYKVTSDFVDAAVKGAIGVINRCIPP 357
Query: 421 INPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKRASDIIS--------INSSGKASHNFT 472
INPTDPECFHMYVHNNIFFSFAVD DL LS+K SD S INSS K + +
Sbjct: 358 INPTDPECFHMYVHNNIFFSFAVDVDLEQLSKKCNSDTSSKTENTSSSINSSEKVTSDL- 416
Query: 473 SADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLH 532
DGGI+ G QLAESEQATYASANNDLKGTKAYQEADVPGL+
Sbjct: 417 HGDGGIANG------------------PQLAESEQATYASANNDLKGTKAYQEADVPGLY 458
Query: 533 NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRL 592
NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKI WNEDFHSKV+EAAKRL
Sbjct: 459 NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVVEAAKRL 518
Query: 593 HLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGLGSRFCIMRP 652
HLKEHTVLDGSG+ FKLAAPVECKGIVGSDDRHYLLDLMR TPRDANYTG GSRFCI+RP
Sbjct: 519 HLKEHTVLDGSGDAFKLAAPVECKGIVGSDDRHYLLDLMRATPRDANYTGPGSRFCILRP 578
Query: 653 ELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKE 712
ELI+AFCQ EA + K + K EG A V DS+E + E E + ++ KE
Sbjct: 579 ELISAFCQAEAVARLKSRPKSEGGAHVAADSTEVTTGDEQVKPEEAAASINNQVSIIAKE 638
Query: 713 GKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEIAADEENVRKVSLYLADVV 772
GK +TV+E A SS+SC+ ILFNPN FTEFKL+G +EIAADEENV+KV YLA+ V
Sbjct: 639 GKADTVEESAPALAGSSESCEEILFNPNVFTEFKLSGDPEEIAADEENVKKVGSYLANTV 698
Query: 773 LPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLPHLWDLCSNEIVVRS 832
LPKFIQDLCTLEVSPMDGQTLTEALHAHGIN+RY+GKVA+G KHLPHLWDLCSNEIVVRS
Sbjct: 699 LPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYMGKVAEGIKHLPHLWDLCSNEIVVRS 758
Query: 833 AKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSS 892
AKHILKD+LR+T+D+DLGPAI+H FNCFFG+CQAV KV+A+ SR A SS
Sbjct: 759 AKHILKDLLRDTDDNDLGPAISHFFNCFFGTCQAVGIKVSANGPHSR------AAKKSSG 812
Query: 893 KSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDARLWVKKVSVM 952
KSSR Q RWK +ARK+ SSYMNV+S+TLWSD++E A+LKYQFELPEDAR VKKVSV+
Sbjct: 813 KSSRGQTRWKG-ASARKNQSSYMNVSSETLWSDIQELAELKYQFELPEDARSQVKKVSVI 871
Query: 953 RNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEG 1012
RNLCQK+GI++ ARKYD NAA PF+ SDILNLQPVVKHSVP+CSEAK++VE GKVQLAEG
Sbjct: 872 RNLCQKMGITIAARKYDLNAAMPFQLSDILNLQPVVKHSVPLCSEAKDIVETGKVQLAEG 931
Query: 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072
+LSEAYT FS+AFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI+QQHKELIINER
Sbjct: 932 MLSEAYTSFSDAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIIQQHKELIINER 991
Query: 1073 CLGLDHPDTAHS-------YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125
CLGLDHPDTAH YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA
Sbjct: 992 CLGLDHPDTAHRHYFLVTVYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1051
Query: 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS 1185
TFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS
Sbjct: 1052 TFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS 1111
Query: 1186 H-------QHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ----------MNVQK 1228
H QHEKKTYDILVKQLGEEDSRT+DSQNWMKTFKMRELQ MN QK
Sbjct: 1112 HQASFSCAQHEKKTYDILVKQLGEEDSRTRDSQNWMKTFKMRELQFSEFLIFLLLMNAQK 1171
Query: 1229 QKGQAFNAASTQKAIDILK--AHPDLIHAFQAVAAAGGSGNSGASA--NNSLNAALLGET 1284
QKGQA NAAS QKAIDILK A+PDL+HAFQA A AGGSG+ S N SLNAA++GET
Sbjct: 1172 QKGQALNAASAQKAIDILKASANPDLLHAFQAAAVAGGSGSGSTSGSMNKSLNAAIVGET 1231
Query: 1285 LPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATPDASV 1344
LPRGRG DERAARAAAEVRKKA A+GLL RPHG+P QALPPLTQLLNIIN SGATPD
Sbjct: 1232 LPRGRGVDERAARAAAEVRKKAAARGLLTRPHGVPVQALPPLTQLLNIIN-SGATPDTVN 1290
Query: 1345 SGATDDSKKEANGHSLAEPSDEKKDVSEPGREAQAPAGLGKGLGSLDAKKQKTK 1398
+ +E NG S +P D +KD + G++ QAP GLGKGL SLDAKKQK K
Sbjct: 1291 NEEAAGGVEETNGQSSNDPVDTQKDQTSGGQD-QAPVGLGKGLASLDAKKQKAK 1343
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357457613|ref|XP_003599087.1| hypothetical protein MTR_3g027610 [Medicago truncatula] gi|355488135|gb|AES69338.1| hypothetical protein MTR_3g027610 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2049 bits (5309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1438 (72%), Positives = 1176/1438 (81%), Gaps = 59/1438 (4%)
Query: 1 MAGKSNKGRNRKVSHAATAAA-----ANSADQVVSSEKDSNSPSESVIVDANANGV--PA 53
MAGKSNKGRNRK S+ A A + + + ++ +N E+V AN + V A
Sbjct: 29 MAGKSNKGRNRKGSNTAAVAVATAAVSGGVETAIQADVPANDNVEAVTEVANIDAVEVAA 88
Query: 54 VSESTIAQADVQESDTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFL 113
V + + ++V E++ AN ++PKQG+L LYPV+VKTQ+ +KLELQLNPGDSVMDIRQFL
Sbjct: 89 VGDGAVVSSEVNENEAANEENQPKQGDLQLYPVSVKTQTGDKLELQLNPGDSVMDIRQFL 148
Query: 114 LDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAH 173
LDAPETCF TCYDL+LHTKDGSTHH+EDYNEISEVADITTGGC+L+MV A YDDRSIRAH
Sbjct: 149 LDAPETCFITCYDLLLHTKDGSTHHMEDYNEISEVADITTGGCSLDMVPAFYDDRSIRAH 208
Query: 174 VHRTRDLLSLSTLHASLSTSLALQYEMAQSKVSSSGDAAKT-EVPELDGLGFMEDVSGSL 232
VHRTR+LLSLS LHASLSTSLALQ E AQ+K +++ A EVPELDGLG+MED+SGSL
Sbjct: 209 VHRTRELLSLSNLHASLSTSLALQNEAAQNKAANAAVDAAKPEVPELDGLGYMEDISGSL 268
Query: 233 GKLLSSSTQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVN 292
G LLSS ++IKCVESIVFSSFNP PS+RRLVGDLIYLDV+TLEG+KY ITG+TKMFYVN
Sbjct: 269 GNLLSSPLKDIKCVESIVFSSFNPPPSYRRLVGDLIYLDVITLEGNKYSITGSTKMFYVN 328
Query: 293 SSTGNVLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNS 352
SS+ N LDP+PSKA SEATTL+ LLQKIS +FKKAFREIL+ +ASAHPFENVQSLLPPNS
Sbjct: 329 SSSANTLDPKPSKATSEATTLVALLQKISPRFKKAFREILEGRASAHPFENVQSLLPPNS 388
Query: 353 WLGLYPVPDHKRDAARAEDALTLSYGSELIGMQRDWNEELQSCREF----PQELLRR--- 405
WLGL+P+P+H+RDAARAE++LTL YGSE IGMQRDWNEELQSCREF PQE + R
Sbjct: 389 WLGLHPIPEHRRDAARAENSLTLLYGSEPIGMQRDWNEELQSCREFSHTTPQERILRDRA 448
Query: 406 -----------AINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLNHLSRKR 454
AINGAIGVIS CIPPINPTDPECFHMYVHNNIFFSFA+D+DL LS+K
Sbjct: 449 LYKVTSDFVDAAINGAIGVISGCIPPINPTDPECFHMYVHNNIFFSFAIDADLEKLSKKH 508
Query: 455 ASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASAN 514
A +SS + + G + G S E Q S LAE+EQATYASAN
Sbjct: 509 ADSNSKTSSSSISLPSSDKVPNG---RKEDGSSLEDTETTQDISPEVLAENEQATYASAN 565
Query: 515 NDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKK 574
NDLKGTKAYQEADVPGL+NLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKK
Sbjct: 566 NDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKK 625
Query: 575 ISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVT 634
ISWNE FH+KV EAAKRLHLKEH+VLDGSGNV KLAAPVECKGIVG DDRHYLLDL+RVT
Sbjct: 626 ISWNEGFHAKVSEAAKRLHLKEHSVLDGSGNVLKLAAPVECKGIVGGDDRHYLLDLLRVT 685
Query: 635 PRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESAN 694
PRDANYTG GSRFCI+RPELI AFCQV+AAE SK P + G + +
Sbjct: 686 PRDANYTGPGSRFCILRPELINAFCQVQAAEASK------------PKDITSEGAENIST 733
Query: 695 HEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEI 754
N AT + D TKE K E V+E SAS E+S + I+FNPN FTEFKLAGS +EI
Sbjct: 734 ESQN--ATDEDKPDLTKEEKTEDVKEQASASNEASCCKEDIVFNPNVFTEFKLAGSPEEI 791
Query: 755 AADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGT 814
AADEE+VRKVS YL DVVLPKF+QDLCTLEVSPMDGQTLTEALHAHGIN+RYIGKVA GT
Sbjct: 792 AADEESVRKVSQYLTDVVLPKFVQDLCTLEVSPMDGQTLTEALHAHGINVRYIGKVAGGT 851
Query: 815 KHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTAS 874
KHLPHLWDLC+NEIVVRSAKH++KD+LRETEDHDL PAI+H NC FG+CQA GK+ +
Sbjct: 852 KHLPHLWDLCNNEIVVRSAKHVIKDLLRETEDHDLSPAISHFLNCLFGNCQAFGGKLVTN 911
Query: 875 NVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKY 934
QSR K+HAGH S KSS+ RW R ++RK SYMN++SDTLWS+++EFA +KY
Sbjct: 912 LTQSRTTKKDHAGHRSPGKSSKGHVRWNGRASSRKTQPSYMNMSSDTLWSEIQEFAMVKY 971
Query: 935 QFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPI 994
+FELPEDAR VKK+SV+RNLC K GI++ ARKYD ++ TPF+TSD+ +L+PVVKHSVP
Sbjct: 972 EFELPEDARSRVKKISVLRNLCLKAGITIAARKYDLSSPTPFQTSDVFDLRPVVKHSVPS 1031
Query: 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1054
CSEAK LVE GK+QLAEG+LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG
Sbjct: 1032 CSEAKELVETGKLQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1091
Query: 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114
DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL
Sbjct: 1092 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1151
Query: 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174
SSGPDHPDVAATFINVAMMYQDIGKM+TALRYLQEALKKNERLLGEEHIQTAVCYHALAI
Sbjct: 1152 SSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1211
Query: 1175 AFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234
AFNCMGAFKLSHQHEKKTYDILVKQLGE+DSRT+DSQNWM TFKMRE+QMN QKQKGQA
Sbjct: 1212 AFNCMGAFKLSHQHEKKTYDILVKQLGEDDSRTRDSQNWMNTFKMREVQMNAQKQKGQAI 1271
Query: 1235 NAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETLPRGRGFDER 1294
NAAS QKAIDILKAHPDLIHAFQ AAAGGSG+S A+AN SLNAA++GE LPRGRG DER
Sbjct: 1272 NAASAQKAIDILKAHPDLIHAFQ--AAAGGSGSSVAAANKSLNAAMMGEALPRGRGNDER 1329
Query: 1295 AARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSGATP----DASVSGATDD 1350
AARAAAEVRKKA A+GL +RPHG+P QA+PPLTQLLNIIN SG P + + +GA D
Sbjct: 1330 AARAAAEVRKKAAARGLTVRPHGVPVQAVPPLTQLLNIIN-SGTAPVAADNGNANGAKQD 1388
Query: 1351 ---SKKEANG---HSLAEPSDEKKDV--SEPGREAQAPAGLGKGLGSLDAKKQKTKAK 1400
+KKEANG + PS + D S P +E AP GLGKGL SLD KKQK+K K
Sbjct: 1389 EDVAKKEANGAQTEANGPPSSDSTDAEKSAPVQEP-APVGLGKGLSSLDNKKQKSKPK 1445
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1403 | ||||||
| UNIPROTKB|F1N988 | 1291 | KIAA0664 "Uncharacterized prot | 0.408 | 0.443 | 0.275 | 4.2e-128 | |
| UNIPROTKB|O75153 | 1309 | CLUH "Clustered mitochondria p | 0.390 | 0.418 | 0.289 | 7.4e-127 | |
| UNIPROTKB|E1BIA7 | 1311 | KIAA0664 "Uncharacterized prot | 0.396 | 0.424 | 0.280 | 6e-126 | |
| MGI|MGI:1921398 | 1315 | Cluh "clustered mitochondria ( | 0.392 | 0.418 | 0.285 | 1.2e-125 | |
| UNIPROTKB|F1RHG1 | 1258 | KIAA0664 "Uncharacterized prot | 0.392 | 0.437 | 0.282 | 1.6e-125 | |
| UNIPROTKB|E2R9L7 | 1348 | KIAA0664 "Uncharacterized prot | 0.396 | 0.412 | 0.279 | 7.6e-125 | |
| UNIPROTKB|K7EIG1 | 1242 | CLUH "Clustered mitochondria p | 0.390 | 0.441 | 0.288 | 1.4e-124 | |
| ZFIN|ZDB-GENE-061103-457 | 1400 | cluh "clustered mitochondria ( | 0.401 | 0.402 | 0.270 | 7.1e-124 | |
| UNIPROTKB|B3MIW0 | 1450 | clu "Protein clueless" [Drosop | 0.332 | 0.321 | 0.303 | 1.1e-122 | |
| UNIPROTKB|B4KT50 | 1487 | clu "Protein clueless" [Drosop | 0.213 | 0.201 | 0.332 | 8.2e-122 |
| UNIPROTKB|F1N988 KIAA0664 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 4.2e-128, Sum P(5) = 4.2e-128
Identities = 169/614 (27%), Positives = 294/614 (47%)
Query: 660 QVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESAN--HEVNVTATSDVSQDATKEGKVET 717
Q +A G S G A S+ +S +V A + S D T + K
Sbjct: 638 QESSAALENGTSPENGTAESEKSESDDGKTDDSVTGLDQVKELAETIASDDGTVDPKSRE 697
Query: 718 V--QECRSASEESSDSCDGILFNPNAFT---EFKLAGSQDEIAADEENVRKVSLYLADVV 772
V C++ S S D I FNP+ F+ F S++E+ ++ ++ + +L
Sbjct: 698 VIRNACKAVGSISDTSFD-IRFNPDIFSPGVRFP-ESSREEVQDQKQLLKDAAAFLLSCQ 755
Query: 773 LPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKV------ADGTKHLPHLWDLCSN 826
+P ++D V PMDG TL EA+H GIN+RY+GKV G L H++ + +
Sbjct: 756 IPGLVKDCLDHTVLPMDGATLAEAMHQRGINMRYLGKVIHFITKTPGHAQLDHIFKIGIS 815
Query: 827 EIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHA 886
E++ RSAKHI K L+ E L AI+H NCF S + A + S+ + K+
Sbjct: 816 ELITRSAKHIFKTYLQGVELSGLSAAISHFLNCFLSSFPNPIAHLPADELVSKKKNKKR- 874
Query: 887 GHPXXXXXXXXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP-----ED 941
K+R ++++ ++ LW ++ AK + F L +
Sbjct: 875 ---------------KNRNLGNADNTAWASMTPQELWKNICSEAKSYFDFSLECENADQA 919
Query: 942 ARLW-VKKVSVMRNLCQKVGISVTARKYDF-NAATP-FETSDILNLQPVVKHSVPICSEA 998
A ++ ++K++++R + K G+ + ++Y+F N P F DILN+ PVVKH P S+A
Sbjct: 920 AEMYNLQKITLLREISLKTGVQILLKEYNFDNRHKPTFTEEDILNIFPVVKHVNPKASDA 979
Query: 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAG 1058
+ + G+ ++ +G L E L +EA ++ V G MH E+ C R LA + Y GD +
Sbjct: 980 FHFFQSGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLNYIMGDYSE 1039
Query: 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGP 1118
A+ Q K ++++ER LG++HP+T Y ++AL+ +Q G
Sbjct: 1040 ALSNQQKAVLMSERVLGIEHPNTIQEYMHLALYCFANSQLSTALNLLYRARYLMLLVFGE 1099
Query: 1119 DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC 1178
DHP++A N+ ++ + + D +LR+L+ AL + + G + ++ A+ +H +A +
Sbjct: 1100 DHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAISSKYHGSKSLKVALSHHLVARVYES 1159
Query: 1179 MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238
F+ + QHEK+ Y I QLGE +TK+S ++K + + + Q+ + + S
Sbjct: 1160 KAEFRSALQHEKEGYTIYKNQLGEHHEKTKESSEYLKYLTQQAVAL--QRTMNEIYKNGS 1217
Query: 1239 TQKAIDILKAHPDL 1252
+ + P++
Sbjct: 1218 NANIVPLKFTAPNM 1231
|
|
| UNIPROTKB|O75153 CLUH "Clustered mitochondria protein homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 7.4e-127, Sum P(7) = 7.4e-127
Identities = 171/591 (28%), Positives = 291/591 (49%)
Query: 666 KSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETVQE-CRSA 724
+SK + P EA + S ASG+ + E+ T +D D T E ++ C++
Sbjct: 651 ESKSEDPPGQEAGSEEEGSSASGLAKVK--ELAETIAAD---DGTDPRSREVIRNACKAV 705
Query: 725 SEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPKFIQDLCT 782
SS + D I FNP+ F+ + S QDE+ ++ ++ + +L +P ++D
Sbjct: 706 GSISSTAFD-IRFNPDIFSPGVRFPESCQDEVRDQKQLLKDAAAFLLSCQIPGLVKDCME 764
Query: 783 LEVSPMDGQTLTEALHAHGINIRYIGKVAD-----GTKH-LPHLWDLCSNEIVVRSAKHI 836
V P+DG TL E + GIN+RY+GKV + +H L H++ + E++ RSAKHI
Sbjct: 765 HAVLPVDGATLAEVMRQRGINMRYLGKVLELVLRSPARHQLDHVFKIGIGELITRSAKHI 824
Query: 837 LKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPXXXXXXX 896
K L+ E L AI+H NCF S + A + S+ + K
Sbjct: 825 FKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELVSKKRNK------------- 871
Query: 897 XQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP----EDA--RLWVKKVS 950
R K+R ++++ + LW ++ + AK + F+L + A ++K++
Sbjct: 872 ---RRKNRPPGAADNTAWAVMTPQELWKNICQEAKNYFDFDLECETVDQAVETYGLQKIT 928
Query: 951 VMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQ 1008
++R + K GI V ++Y F++ P F D+LN+ PVVKH P S+A + + G+ +
Sbjct: 929 LLREISLKTGIQVLLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQAK 988
Query: 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELI 1068
+ +G L E L +EA ++ V G MH E C R LA + Y GD A A+ Q K ++
Sbjct: 989 VQQGFLKEGCELINEALNLFNNVYGAMHVETCACLRLLARLHYIMGDYAEALSNQQKAVL 1048
Query: 1069 INERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFI 1128
++ER +G +HP+T Y ++AL+ +Q G DHP++A
Sbjct: 1049 MSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEMALLDN 1108
Query: 1129 NVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188
N+ ++ + + D +LR+L+ AL + + G + ++ A+ +H +A + F+ + QH
Sbjct: 1109 NIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVALSHHLVARVYESKAEFRSALQH 1168
Query: 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
EK+ Y I QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1169 EKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1219
|
|
| UNIPROTKB|E1BIA7 KIAA0664 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 6.0e-126, Sum P(5) = 6.0e-126
Identities = 165/588 (28%), Positives = 281/588 (47%)
Query: 664 AEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETVQECRS 723
+ +SK + P EA + S ASG+ + E+ T SD A G+ C++
Sbjct: 649 SSESKPDAPPAPEAGGEEEGSSASGL--ATVKELAETVASD-DGTADPRGREVIRNACKA 705
Query: 724 ASEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPKFIQDLC 781
SS + D + FNP+ F+ + S Q+E+ ++ ++ + +L +P ++D
Sbjct: 706 VGSISSTAFD-VRFNPDIFSPGVRFPESCQEEVRDQKQLLKDAAAFLLSCQIPGLVKDFT 764
Query: 782 TLEVSPMDGQTLTEALHAHGINIRYIGKVAD------GTKHLPHLWDLCSNEIVVRSAKH 835
V PMDG TL E + GIN+RY+GKV D L H++ + E++ RSAKH
Sbjct: 765 DHAVLPMDGATLAEVMRQRGINMRYLGKVLDLVMRSPARDQLDHIYKIGIGELITRSAKH 824
Query: 836 ILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPXXXXXX 895
I K L+ E L AI+H NCF S + A + S+ + + P
Sbjct: 825 IFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELISKKRNRRRRNRPPGAADN 884
Query: 896 XXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDA--RLWVKKVSVMR 953
W A + N+ + K + + E + A ++K++++R
Sbjct: 885 TA---W----AVMTPQELWKNICQEA-----KNYFDFSLECETVDQAVETYGLQKITLLR 932
Query: 954 NLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAE 1011
+ K GI + ++Y F++ P F D+LN+ PVVKH P S+A + + G+ ++ +
Sbjct: 933 EISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQAKVQQ 992
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071
G L E L +EA ++ V G MH E+ C R LA + Y GD A A+ Q K ++++E
Sbjct: 993 GFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALSNQQKAVLMSE 1052
Query: 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVA 1131
R +G++HP+T Y ++AL+ +Q G DHP++A N+
Sbjct: 1053 RVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLTLLVFGEDHPEMALLDNNIG 1112
Query: 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191
++ + + D +LR+L+ AL + + G + ++ A+ +H +A + F+ + QHEK+
Sbjct: 1113 LVLHGVMEYDLSLRFLENALAVSTKYHGPKSLKVALSHHLVARVYESKAEFRSALQHEKE 1172
Query: 1192 TYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
Y I QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1173 GYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1220
|
|
| MGI|MGI:1921398 Cluh "clustered mitochondria (cluA/CLU1) homolog" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 1.2e-125, Sum P(6) = 1.2e-125
Identities = 169/592 (28%), Positives = 286/592 (48%)
Query: 667 SKGQSKPEGEAIVNPDSS-EASGIKESANHEVNVTATSDVSQDATKEGKVETV--QECRS 723
S ++K E + P++ E G S +V A + S D T + + V C++
Sbjct: 649 SSAETKSEDS--IGPEAGCEEEGSSVSGLAKVKELAETIASDDGTVDPRSREVIRNACKA 706
Query: 724 ASEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPKFIQDLC 781
SS + D I FNP+ F+ + S QDE+ ++ ++ + +L +P ++D
Sbjct: 707 VGSISSTAFD-IRFNPDIFSPGVRFPESCQDEVRDQKQLLKDAAAFLLSCQIPGLVKDCT 765
Query: 782 TLEVSPMDGQTLTEALHAHGINIRYIGKVAD------GTKHLPHLWDLCSNEIVVRSAKH 835
V PMDG TL E + GIN+RY+GKV D L H++ + E++ RSAKH
Sbjct: 766 EYAVLPMDGATLAEVMRQRGINMRYLGKVLDLVLRSPARDQLDHIYKIGIGELITRSAKH 825
Query: 836 ILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPXXXXXX 895
I K L+ E L AI+H NCF S + A + S+ + K
Sbjct: 826 IFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELLSKKRNK------------ 873
Query: 896 XXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDA------RLWVKKV 949
R K+R ++++ + LW ++ AK + F L D+ ++K+
Sbjct: 874 ----RRKNRPPGAADNTAWAVMTPQELWKNICHEAKNYFDFTLECDSVDQAVETYGLQKI 929
Query: 950 SVMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKV 1007
+++R + K GI + ++Y F++ P F D+LN+ PVVKH P S+A + + G+
Sbjct: 930 TLLREISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQA 989
Query: 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067
++ +G L E L +EA ++ V G MH E+ C R LA + Y GD A A+ Q K +
Sbjct: 990 KVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALSNQQKAV 1049
Query: 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATF 1127
+++ER +G++HP+T Y ++AL+ +Q G DHP++A
Sbjct: 1050 LMSERVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEMALLD 1109
Query: 1128 INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQ 1187
N+ ++ + + D +LR+L+ AL + G + ++ A+ +H +A + F+ + Q
Sbjct: 1110 NNIGLVLHGVMEYDLSLRFLENALAVTTKYHGPKALKVALSHHLVARVYESKAEFRSALQ 1169
Query: 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
HEK+ Y I QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1170 HEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1221
|
|
| UNIPROTKB|F1RHG1 KIAA0664 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 1.6e-125, Sum P(7) = 1.6e-125
Identities = 168/594 (28%), Positives = 292/594 (49%)
Query: 664 AEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETV--QEC 721
+ +SK + P EA + S ASG+ + E+ T SD D T + + V C
Sbjct: 596 SSESKPEDPPAPEAGSKEEGSSASGLAKVK--ELAETIASD---DGTADPRSREVIRNAC 650
Query: 722 RSASEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPKFIQD 779
++ SS + D + FNP+ F+ + S Q+E+ ++ ++ + +L +P ++D
Sbjct: 651 KAVGSISSTAFD-VRFNPDIFSPGVRFPESCQEEVRDQKQLLKDAAAFLLSCQIPGLVKD 709
Query: 780 LCTLEVSPMDGQTLTEALHAHGINIRYIGKVAD------GTKHLPHLWDLCSNEIVVRSA 833
V PMDG TL E + GIN+RY+GKV D + L H++ + E++ RSA
Sbjct: 710 CADHAVLPMDGATLAEVMRQRGINMRYLGKVLDLVLRSPAREQLDHIYKIGIGELITRSA 769
Query: 834 KHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPXXXX 893
KHI K L+ E L AI+H NCF S + A + S+ + +
Sbjct: 770 KHIFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELVSKKRNR---------- 819
Query: 894 XXXXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP-----EDARLW-VK 947
R ++R ++++ + LW ++ + AK + F L + ++ ++
Sbjct: 820 ------RRRNRPPGAADNTAWAVMTPQELWKNICQEAKNYFDFSLECETVDQAVEIYGLQ 873
Query: 948 KVSVMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMG 1005
K++++R + K GI + ++Y F++ P F D+LN+ PVVKH P S+A + + G
Sbjct: 874 KITLLREISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSG 933
Query: 1006 KVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHK 1065
+ ++ +G L E L +EA ++ V G MH E+ C R LA + Y GD A A+ Q K
Sbjct: 934 QAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALSNQQK 993
Query: 1066 ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAA 1125
++++ER LG++HP T Y ++AL+ +Q G DHP++A
Sbjct: 994 AVLMSERVLGIEHPSTIQEYMHLALYCFASSQLSTALSLLYRARYLTLLVFGEDHPEMAL 1053
Query: 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS 1185
N+ ++ + + D +LR+L+ AL + + G + ++ A+ +H +A + F+ +
Sbjct: 1054 LDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKSLKVALSHHLVARVYESKAEFRSA 1113
Query: 1186 HQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
QHEK+ Y I QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1114 LQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1167
|
|
| UNIPROTKB|E2R9L7 KIAA0664 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 7.6e-125, Sum P(6) = 7.6e-125
Identities = 167/598 (27%), Positives = 289/598 (48%)
Query: 661 VEAAEKSKGQSKPEGEAIVNPDS-SEASGIKESANHEVNVTATSDVSQDATKEGKVETV- 718
+E + SKPE P++ SE G S +V A + S D T + + V
Sbjct: 680 LENGDSPSSASKPEDSP--GPEAGSEEEGGSASGLAKVKELAETIASDDGTADPRSREVI 737
Query: 719 -QECRSASEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPK 775
C++ SS + D + FNP+ F+ + S Q+E+ ++ ++ + +L +P
Sbjct: 738 RNACKAVGSISSTAFD-VRFNPDIFSPGVRFPESCQEEVRDQKQLLKDAAAFLLSCQIPG 796
Query: 776 FIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVAD------GTKHLPHLWDLCSNEIV 829
++D V PMDG TL E + GIN+RY+GKV D L H++ + E++
Sbjct: 797 LVKDCIDHAVLPMDGATLAEVMRQRGINMRYLGKVLDMVLRSPARDQLDHIYKIGIGELI 856
Query: 830 VRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHP 889
RSAKHI K L+ E L AI+H NCF S + A + S+ + +
Sbjct: 857 TRSAKHIFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELISKKRNR------ 910
Query: 890 XXXXXXXXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQF----ELPEDA--R 943
R ++R ++++ + LW ++ + AK + F E + A
Sbjct: 911 ----------RRRNRPPGAADNTAWAVMTPQELWKNICQEAKNYFDFILECETVDQAVET 960
Query: 944 LWVKKVSVMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNL 1001
++K++++R + K GI + ++Y F++ P F D+LN+ PVVKH P S+A +
Sbjct: 961 YGLQKITLLREISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHF 1020
Query: 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIM 1061
+ G+ ++ +G L E L +EA ++ V G MH E+ C R LA + Y GD A A+
Sbjct: 1021 FQSGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALS 1080
Query: 1062 QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHP 1121
Q K ++++ER +G++HP+T Y ++AL+ +Q G DHP
Sbjct: 1081 NQQKAVLMSERVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLTLLVFGEDHP 1140
Query: 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGA 1181
++A N+ ++ + + D +LR+L+ AL + + G ++ A+ +H +A +
Sbjct: 1141 EMALLDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPRSLKVALSHHLVARVYESKAE 1200
Query: 1182 FKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
F+ + QHEK+ Y + QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1201 FRSALQHEKEGYTVYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1258
|
|
| UNIPROTKB|K7EIG1 CLUH "Clustered mitochondria protein homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 1.4e-124, Sum P(7) = 1.4e-124
Identities = 171/592 (28%), Positives = 291/592 (49%)
Query: 666 KSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETV--QECRS 723
+SK + P EA + S ASG+ + E+ T +D D T + + V C++
Sbjct: 583 ESKSEDPPGQEAGSEEEGSSASGLAKVK--ELAETIAAD---DGTADPRSREVIRNACKA 637
Query: 724 ASEESSDSCDGILFNPNAFTE-FKLAGS-QDEIAADEENVRKVSLYLADVVLPKFIQDLC 781
SS + D I FNP+ F+ + S QDE+ ++ ++ + +L +P ++D
Sbjct: 638 VGSISSTAFD-IRFNPDIFSPGVRFPESCQDEVRDQKQLLKDAAAFLLSCQIPGLVKDCM 696
Query: 782 TLEVSPMDGQTLTEALHAHGINIRYIGKVAD-----GTKH-LPHLWDLCSNEIVVRSAKH 835
V P+DG TL E + GIN+RY+GKV + +H L H++ + E++ RSAKH
Sbjct: 697 EHAVLPVDGATLAEVMRQRGINMRYLGKVLELVLRSPARHQLDHVFKIGIGELITRSAKH 756
Query: 836 ILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPXXXXXX 895
I K L+ E L AI+H NCF S + A + S+ + K
Sbjct: 757 IFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELVSKKRNK------------ 804
Query: 896 XXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP----EDA--RLWVKKV 949
R K+R ++++ + LW ++ + AK + F+L + A ++K+
Sbjct: 805 ----RRKNRPPGAADNTAWAVMTPQELWKNICQEAKNYFDFDLECETVDQAVETYGLQKI 860
Query: 950 SVMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKV 1007
+++R + K GI V ++Y F++ P F D+LN+ PVVKH P S+A + + G+
Sbjct: 861 TLLREISLKTGIQVLLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQA 920
Query: 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067
++ +G L E L +EA ++ V G MH E C R LA + Y GD A A+ Q K +
Sbjct: 921 KVQQGFLKEGCELINEALNLFNNVYGAMHVETCACLRLLARLHYIMGDYAEALSNQQKAV 980
Query: 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATF 1127
+++ER +G +HP+T Y ++AL+ +Q G DHP++A
Sbjct: 981 LMSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEMALLD 1040
Query: 1128 INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQ 1187
N+ ++ + + D +LR+L+ AL + + G + ++ A+ +H +A + F+ + Q
Sbjct: 1041 NNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVALSHHLVARVYESKAEFRSALQ 1100
Query: 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE--LQ--MNVQKQKGQAFN 1235
HEK+ Y I QLGE+ +TK+S ++K + LQ MN + G + N
Sbjct: 1101 HEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSSAN 1152
|
|
| ZFIN|ZDB-GENE-061103-457 cluh "clustered mitochondria (cluA/CLU1) homolog" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 7.1e-124, Sum P(4) = 7.1e-124
Identities = 165/610 (27%), Positives = 293/610 (48%)
Query: 663 AAEKSKGQSK-P-EG-EAIVN-PDSSEASGIKESANHEVNVTATSDVSQDATKEGKVETV 718
AAE+ G P EG EA N P ++A + ES A D S K +V +
Sbjct: 758 AAERQNGGCDGPLEGKEADENIPGLAQAKELAESL-------AAEDGSGIDPKSREV-VL 809
Query: 719 QECRSASEESSDSCDGILFNPNAFTE-FKLAG-SQDEIAADEENVRKVSLYLADVVLPKF 776
C++ S+ S D I FNP+ F+ + S ++I ++ ++ + +L +P
Sbjct: 810 NACKAVGSISNTSFD-IRFNPDIFSPGVRFPDDSNEDIQKQKQLLKDAAAFLVSCQIPSL 868
Query: 777 IQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLP------HLWDLCSNEIVV 830
++D PMDG T+TEALH GIN+RY+G V + ++P H++ + +E++
Sbjct: 869 VKDCLDHSSLPMDGATMTEALHQRGINVRYLGTVLEFMDNMPAKAQLEHIYRIGISELIT 928
Query: 831 RSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPX 890
R AKHI K L+ + L A++H NC S + A + SR + ++
Sbjct: 929 RCAKHIFKTYLQGVDLSALSAAVSHFLNCLLSSFPDAVAHLPADELVSRKKSRKR----- 983
Query: 891 XXXXXXXQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDA------RL 944
++RV ++++ ++ LW ++ A Y F L ++ +
Sbjct: 984 -----------RNRVPGGGDNTAWASLTPSELWKNITSEAHGYYNFSLQCESVDQAVEKY 1032
Query: 945 WVKKVSVMRNLCQKVGISVTARKYDFNAA-TP-FETSDILNLQPVVKHSVPICSEAKNLV 1002
++K++++R + K GI + ++Y+F++ P F DILN+ PVVKH P S+A +
Sbjct: 1033 GLQKITLLREISIKTGIQILIKEYNFDSRHKPAFTEEDILNIFPVVKHVNPKASDAFHFF 1092
Query: 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQ 1062
+ G+ ++ +G L E L +EA ++ V G MH E+ C R LA + Y GD A+
Sbjct: 1093 QSGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLNYIMGDHPEALSN 1152
Query: 1063 QHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPD 1122
Q K ++++ER LG++HP+T Y ++AL+ Q G DHP+
Sbjct: 1153 QQKAVLMSERVLGIEHPNTIQEYMHLALYCFANGQLSTALKLLYRARYLMLVVCGEDHPE 1212
Query: 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAF 1182
+A N+ ++ + + D +LR+L+ AL N + G ++ A+ +H +A + F
Sbjct: 1213 MALLDSNIGLVLHGVMEYDLSLRFLENALAINTKYHGPRSLKVALSHHLVARVYESKAEF 1272
Query: 1183 KLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKA 1242
+ + QHEK+ Y I Q+GE +TK+S ++K + + + Q+ + + S
Sbjct: 1273 RSALQHEKEGYTIYKNQVGEAHEKTKESSEYLKYLTQQAVAL--QRTMNEIYKNGSNASI 1330
Query: 1243 IDILKAHPDL 1252
+ + P +
Sbjct: 1331 MPLKFTAPSM 1340
|
|
| UNIPROTKB|B3MIW0 clu "Protein clueless" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 1.1e-122, Sum P(4) = 1.1e-122
Identities = 147/484 (30%), Positives = 244/484 (50%)
Query: 749 GSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIG 808
G+ +A + V+ + +L +P FI++ P+DGQ+LTE+LH+HGIN+RY+G
Sbjct: 837 GTCSSLAKQKVLVQDAAEFLVVKQIPAFIKEHLAHSSPPIDGQSLTESLHSHGINVRYLG 896
Query: 809 KVADGTKHLP---HLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQ 865
KV +P +L + E++VR+ KHI ++ TE L AI+H NC +
Sbjct: 897 KVIKLLAQMPRMDYLHRIAVLELIVRATKHIYYTYMQNTEPLHLSAAISHFLNCLL-TTG 955
Query: 866 AVRGKVTASNV-QSRNQMKEHAGHPXXXXXXXXQARWKDRVAARKH-----HSSYMNVNS 919
V V++ + R+ +H H A S + V
Sbjct: 956 PVNPAVSSEEAHKKRSNGNKHNKHKSKGNKQQASGNQNGSSAGSSSGGSSSSSDWTLVTP 1015
Query: 920 DTLWSDLKEFAKLKYQFELPEDA------RLWVKKVSVMRNLCQKVGISVTARKYDFNAA 973
+LW ++ AK + +EL D+ + + ++S++R C KVGI V R+Y+F +
Sbjct: 1016 RSLWQQIRREAKSYWDWELDCDSIETAVSKYGILRISLLRAFCLKVGIQVLLREYNFESK 1075
Query: 974 -TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQV 1031
P F DI+N+ PVVKH P ++A N G+ ++ +G+ E Y L SEA ++L V
Sbjct: 1076 HKPTFGDEDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGMFKEGYELISEALNLLNNV 1135
Query: 1032 TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091
G MH+E +C R LA + Y GD A+ Q + +I++ER G+DHP T Y +++L+
Sbjct: 1136 FGAMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHLSLY 1195
Query: 1092 YHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151
G DHP+VA N++++ +G+ + +LR+++ AL
Sbjct: 1196 SFANGHVGMSLKLLYRARYLMVLICGEDHPEVALIDSNISLILHALGEYELSLRFIEHAL 1255
Query: 1152 KKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQ 1211
K N + G + + A YH +A +CMG F+ + +EK+TY I Q+GE+ +T+DS
Sbjct: 1256 KLNIKYFGSKAMHVAFSYHLMARTQSCMGDFRSALNNEKETYSIYKSQVGEKHEKTRDSA 1315
Query: 1212 NWMK 1215
++
Sbjct: 1316 ECLR 1319
|
|
| UNIPROTKB|B4KT50 clu "Protein clueless" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 8.2e-122, Sum P(5) = 8.2e-122
Identities = 102/307 (33%), Positives = 167/307 (54%)
Query: 917 VNSDTLWSDLKEFAKLKYQFELPED------ARLWVKKVSVMRNLCQKVGISVTARKYDF 970
V +LW +++ K + +EL D A+ + ++S++R C KVGI V R+Y+F
Sbjct: 1051 VTPRSLWQQIRKEIKSYWNWELDCDSIESACAKYGLLRISLLRAFCLKVGIQVLLREYNF 1110
Query: 971 NAA-TP-FETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSIL 1028
+ P F DI+N+ PVVKH P ++A N G+ ++ +GLL E Y L SEA ++L
Sbjct: 1111 ESKHKPTFGDDDIVNVFPVVKHISPRATDAYNFYTTGQAKIQQGLLKEGYELISEALNLL 1170
Query: 1029 QQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM 1088
V G MH+E +C R LA + Y GD A+ Q + +I++ER G+DHP T Y ++
Sbjct: 1171 NNVFGAMHQENGSCLRMLARLSYLLGDAQDALAIQQRAVIMSERVNGIDHPSTILEYTHL 1230
Query: 1089 ALFYHGLNQTEXXXXXXXXXXXXXXXXXGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148
+L+ G DHP+VA N++++ +G+ + +LR+++
Sbjct: 1231 SLYSFANGHVGMSLKLLYRARYLLVLVCGEDHPEVALIDSNISLILHALGEYELSLRFIE 1290
Query: 1149 EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208
ALK N + G + + AV YH +A +CMG F+ + +EK+TY I QLGE+ +T+
Sbjct: 1291 HALKLNLKYFGNKAMHVAVSYHLMARIQSCMGDFRSALNNEKETYSIYKSQLGEKHDKTR 1350
Query: 1209 DSQNWMK 1215
+S ++
Sbjct: 1351 ESAECLR 1357
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4J5S1 | CLU_ARATH | No assigned EC number | 0.7173 | 0.9272 | 0.9246 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1403 | |||
| pfam13236 | 222 | pfam13236, CLU, Clustered mitochondria | 5e-78 | |
| pfam12807 | 169 | pfam12807, eIF3_p135, Translation initiation facto | 7e-57 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-14 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-11 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-07 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 3e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-06 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 3e-05 | |
| pfam05303 | 108 | pfam05303, DUF727, Protein of unknown function (DU | 4e-05 |
| >gnl|CDD|221999 pfam13236, CLU, Clustered mitochondria | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 5e-78
Identities = 99/273 (36%), Positives = 134/273 (49%), Gaps = 69/273 (25%)
Query: 387 DWNEELQSCREFPQE-----LLR-RAIN------------GAIGVISRCIPPINPTDPEC 428
DWNEE QS RE P+E LLR R ++ GA ++ I P+NP +P+
Sbjct: 1 DWNEEFQSIRELPRETLQERLLRERLLSKVSSDFVEAATKGAKAIVDGNIVPLNPKEPKP 60
Query: 429 FHMYVHNNIFFSFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESN 488
H+Y++NNIFFSF VD + G
Sbjct: 61 AHIYLYNNIFFSFGVDV----------------------VGTYAWLGG------------ 86
Query: 489 GVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVA 548
++A +AN DLKG KA DVPGLH L AI+DYRG+R+VA
Sbjct: 87 -----------------DEAARKAANKDLKGVKALNRLDVPGLHTLLTAIVDYRGYRLVA 129
Query: 549 QSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFK 608
QS +PGIL + +++YGS D GK + +E+FH + +AAK+LHLK H V D +
Sbjct: 130 QSPVPGILSQENESTVVYGSSDGGKTVHSDEEFHELLKKAAKKLHLKPHEVGDKDDQEVE 189
Query: 609 LAAPVECKGIVGSDDRHYLLDLMRVTPRDANYT 641
L + KGI+G+D R Y+LDL R P D N+
Sbjct: 190 LCGSSDSKGILGTDGRKYVLDLARTFPPDINFL 222
|
The CLU domain (CLUstered mitochondria) is a eukaryotic domain found in proteins from fungi, protozoa, plants to humans. It is required for correct functioning of the mitochondria and mitochondrial transport although the exact function of the domain is unknown. In Dictyostelium the full-length protein is required for a very late step in fission of the outer mitochondrial membrane suggesting that mitochondria are transported along microtubules, as in mammalian cells, rather than along actin filaments, as in budding yeast. Disruption of the protein-impaired cytokinesis and caused mitochondria to cluster at the cell centre. It is likely that CLU functions in a novel pathway that positions mitochondria within the cell based on their physiological state. Disruption of the CLU pathway may enhance oxidative damage, alter gene expression, cause mitochondria to cluster at microtubule plus ends, and lead eventually to mitochondrial failure. Length = 222 |
| >gnl|CDD|221783 pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135 | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 7e-57
Identities = 70/195 (35%), Positives = 107/195 (54%), Gaps = 30/195 (15%)
Query: 781 CTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTK-HLPHLWDLCSNEIVVRSAKHILKD 839
+LE+SPMDGQ+LTE LH GIN+RY+GKVA LPHL LC +E++ R+AKHIL+
Sbjct: 1 ISLELSPMDGQSLTELLHRRGINMRYLGKVAKLASKRLPHLKRLCVSEMIARAAKHILRT 60
Query: 840 VLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQA 899
LR DL AI+H NC GS SN ++ E
Sbjct: 61 YLRGVPAPDLSAAISHFLNCLLGSE---------SNPDPEAEIDE--------------- 96
Query: 900 RWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDA---RLWVKKVSVMRNLC 956
+ + ++ + + LWS++++ AK ++++EL ED + ++K+S++R +C
Sbjct: 97 --SRSASYPEDDFAWEKLTPEELWSEIEKEAKDRFRYELKEDWKDEQYGLQKISLLREIC 154
Query: 957 QKVGISVTARKYDFN 971
KVGI + R+YDF+
Sbjct: 155 LKVGIQLLLREYDFD 169
|
Translation initiation factor eIF3 is a multi-subunit protein complex required for initiation of protein biosynthesis in eukaryotic cells. The complex promotes ribosome dissociation, the binding of the initiator methionyl-tRNA to the 40 S ribosomal subunit, and mRNA recruitment to the ribosome. The protein product from TIF31 genes in yeast is p135 which associates with the eIF3 but does not seem to be necessary for protein translation initiation. Length = 169 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-14
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI 1137
HPD A + N+AL L + AL + +AL L G DHP+ A N+A +Y +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLAL 59
Query: 1138 GKMDTALRYLQEALK 1152
G D AL YL++AL
Sbjct: 60 GDYDEALEYLEKALA 74
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM 1179
HPD+AA N+A++ + +G D AL L++AL+ R LGE+H +TA + LA + +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALE-LARELGEDHPETARALNNLARLYLAL 59
Query: 1180 GAFKLSHQHEKKTYDI 1195
G + + ++ +K +
Sbjct: 60 GDYDEALEYLEKALAL 75
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL 1095
H ++A LA+VL GD A+ K L + R LG DHP+TA + N+A Y L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59
Query: 1096 NQTELALRHMSRAL 1109
+ AL ++ +AL
Sbjct: 60 GDYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEL 1100
L + Y GD A+ E+ L LD PD A +Y N+A Y+ L + E
Sbjct: 1 EALLNLGNLYYKLGDYDEALE-------YYEKALELD-PDNADAYYNLAAAYYKLGKYEE 52
Query: 1101 ALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155
AL +AL L PD+ + N+ + Y +GK + AL ++AL+ +
Sbjct: 53 ALEDYEKALEL-----DPDNAKA---YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-06
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164
AA+ N+A + G+ + A L+EAL R+LG +H
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTAL 1144
N+ Y+ L + AL + +AL L PD A + N+A Y +GK + AL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEAL 54
Query: 1145 RYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
++AL+ + A Y+ L +A+ +G ++
Sbjct: 55 EDYEKALELDPDN--------AKAYYNLGLAYYKLGKYE 85
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (115), Expect = 7e-06
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 18/207 (8%)
Query: 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMV 1049
+P A L+ + L G L EA L +A + LA
Sbjct: 51 ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL-------------PNLAEA 97
Query: 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1109
L + G + A+ + + L + E+ L LD + L E AL +AL
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 1110 LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169
L P+ ++A + + + + +G+ + AL L++ALK N E + + Y
Sbjct: 158 EL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 1170 HALAIAFNCMGAFKLSHQHEKKTYDIL 1196
L + ++ + + + + L
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEAL 239
|
Length = 291 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080
A LA L G A + L I R LG DHPD
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|218547 pfam05303, DUF727, Protein of unknown function (DUF727) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 246 VESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSK 305
V I S P DL Y++V TLEG++YC+ T K F + SS + ++ +
Sbjct: 17 VNEISVSEMLPRTR------DLAYINVETLEGNRYCVELTEKGFRIVSSRFDCVNDDFRE 70
Query: 306 ANSEAT---TLIGLLQKISSKFKKAFREILDRKASA 338
T LL IS +++AF L ++
Sbjct: 71 LELCTKYYETAYSLLDTISPLYREAFGNALLQRLEE 106
|
This family consists of several uncharacterized eukaryotic proteins of unknown function. Length = 108 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1403 | |||
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 100.0 | |
| PF13236 | 221 | CLU: Clustered mitochondria | 100.0 | |
| PF12807 | 169 | eIF3_p135: Translation initiation factor eIF3 subu | 100.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PF15044 | 76 | CLU_N: Mitochondrial function, CLU-N-term | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.66 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.64 | |
| PF05303 | 108 | DUF727: Protein of unknown function (DUF727); Inte | 99.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.59 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.59 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.59 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.58 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.57 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.56 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.41 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.19 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.17 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.12 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.12 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.12 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.11 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.05 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.95 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.93 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.88 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.87 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.82 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.65 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.63 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.61 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.56 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.46 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.36 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.35 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.21 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.18 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.15 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.97 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.97 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.79 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.78 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.74 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.63 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.49 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.46 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.41 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.36 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.28 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.27 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.24 | |
| KOG3965 | 160 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 97.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.0 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.99 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.92 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.87 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.85 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.82 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.66 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 96.64 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.63 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.53 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.45 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.39 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.34 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 96.25 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.22 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 96.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 96.03 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.99 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 95.99 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.88 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 95.85 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 95.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.79 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 95.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.76 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.67 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 95.64 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 95.62 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 95.6 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 95.56 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.39 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 95.26 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 95.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.14 | |
| cd01790 | 79 | Herp_N Homocysteine-responsive endoplasmic reticul | 95.07 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 95.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.0 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 95.0 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 94.8 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 94.76 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.66 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 94.65 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.57 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 94.52 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.44 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 94.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.26 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 94.23 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.22 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 94.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.1 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 94.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.09 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.07 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 94.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.95 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.92 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 93.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.64 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.6 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 93.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.31 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.2 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.13 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.05 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 92.93 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.72 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 92.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.05 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 91.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 91.88 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 91.84 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 91.79 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 91.34 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.83 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.75 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 90.69 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 90.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.23 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.06 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 89.95 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 89.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.34 | |
| cd01770 | 79 | p47_UBX p47-like ubiquitin domain. p47_UBX p47 is | 89.18 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 88.95 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 88.77 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 88.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.31 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 88.3 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 88.19 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 88.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.73 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 87.53 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 87.35 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 86.66 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.59 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.44 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 86.41 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.97 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.91 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 85.84 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 85.69 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.66 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.53 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 85.44 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 84.98 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 84.95 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.83 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 84.8 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 84.07 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 83.48 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 83.36 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 83.29 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.65 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.58 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 82.55 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 82.43 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 82.25 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 82.02 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 81.84 | |
| cd01772 | 79 | SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst | 81.75 | |
| cd09239 | 361 | BRO1_HD-PTP_like Protein-interacting, N-terminal, | 81.69 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.62 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.34 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 81.34 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 81.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.24 | |
| cd09242 | 348 | BRO1_ScBro1_like Protein-interacting, N-terminal, | 81.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.03 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 80.13 |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-155 Score=1446.05 Aligned_cols=1071 Identities=36% Similarity=0.521 Sum_probs=911.3
Q ss_pred cccCCCCCCCCCccccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccccccccccc
Q 000589 68 DTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISE 147 (1403)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~ 147 (1403)
.+.....++..+.....+++|+.|.+..+.++++++++||||||+|++.+.||++|||+|.+.. ..|+.|.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~l~~~~~v~~~~q~l~~~~~t~~~tc~~L~~~~-----~~~d~~~~~~~ 91 (1236)
T KOG1839|consen 17 KTVGDDSEPSAEGDAKSDINIQPSTGGLLSFELSSFSKVQDVRQVLLDRPLTCYITCLSLLLDE-----SKLDYFHIKKK 91 (1236)
T ss_pred cccCCcccccccccccccccccCCCCCceEEEecCcchhhhHHHHHhcccccCceeEEEEEecc-----cccccccceee
Confidence 3334444555566677899999999999999999999999999999999999999999999998 88999999999
Q ss_pred ccccCCCccEEEEEecCCCHHHHHHHHHHHHHhhcCCCccccc----chhhhhhhhhhhcccCCCCcccCCCCCCCCCCC
Q 000589 148 VADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLSLSTLHASL----STSLALQYEMAQSKVSSSGDAAKTEVPELDGLG 223 (1403)
Q Consensus 148 ~~~~~~~~~~l~~v~~~Y~~~~a~~Hv~r~rd~~~~~~~~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (1403)
|.+.+. +|+|.+|.+|||+|+||.||++|||||.......+. .+.+....-..... +++.++.+.+.+...
T Consensus 92 i~~~~~-~~~l~~v~~pY~~re~~~Hv~~vrdlL~~~~~~sa~~~~~~a~~~~~~~~~i~~----~~~~~t~~~p~d~~~ 166 (1236)
T KOG1839|consen 92 ISSGKP-GCVLASVLGPYTPREARLHVHSVRDLLSSSDFASAYSPLMKAFFDHNKLGNIPL----GDRKNTWVDPEDCKP 166 (1236)
T ss_pred ecCCCc-ceEEEEecccCChHHHHHHHHHHHHHHhcCChhhhhcchhhhhhhhccccCCCc----cccccCCCCccccCC
Confidence 999888 999999999999999999999999999764443211 11111111111111 111111222223333
Q ss_pred Cccccc----ccccccCCC--CCccccccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCC
Q 000589 224 FMEDVS----GSLGKLLSS--STQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGN 297 (1403)
Q Consensus 224 ~~~~~~----~~l~~~~~~--~~~~~~~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~ 297 (1403)
++.+++ ..++++.+. ..+.++|+|+|+||+|||||++|+++||||||+|+|+||++||||||++|||||+|+++
T Consensus 167 ~~~~lp~~~e~~~~~~~~~~~~~~~~~~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~ 246 (1236)
T KOG1839|consen 167 PFPDLPGEDERWGGDGGEGRSGPKWAKCFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSS 246 (1236)
T ss_pred CCCCCCccccccCCCCCcCCCCcccchHHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccC
Confidence 333333 333344442 24678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccHHHHHHHhcHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCcccCCCCCCCCCChhhhhHhhhhcc
Q 000589 298 VLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSY 377 (1403)
Q Consensus 298 ~fdp~p~~~~~~~hsL~~Ll~~~S~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~d~~r~e~~~~~~~ 377 (1403)
+|||+|......+|||++||+++||+|+++|..++++++++|+||+++..+|..+|++++ ..|.+|++|+|++++ ++
T Consensus 247 ~fdP~p~~~~~ls~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~--~~~~~d~~r~~~A~~-~~ 323 (1236)
T KOG1839|consen 247 KFDPSPSGSGDLSHSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHP--LPHLADAARAEEALT-GY 323 (1236)
T ss_pred CCCCCCCCCccchhhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccC--CCchHHHHhhHHHhc-cc
Confidence 999999999999999999999999999999999999999999999999999999999987 778999999999997 68
Q ss_pred CCCCCCCCCccHHHhhhhhcCc----hHHH--------------HHHHhhhHHhhcccCCCCCCCCCCCcceeEEcCeeE
Q 000589 378 GSELIGMQRDWNEELQSCREFP----QELL--------------RRAINGAIGVISRCIPPINPTDPECFHMYVHNNIFF 439 (1403)
Q Consensus 378 g~~~~~~~rdWNee~Q~~~elp----~erl--------------~aA~~ga~~vi~~~i~p~np~~~~~~~~~~~nnIff 439 (1403)
+.+.+|+.||||||||++|||| +||+ ++|++|||+||+|||++|||+++...||||||||||
T Consensus 324 ~~~~~G~~rdwNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i~~nIf~ 403 (1236)
T KOG1839|consen 324 YLEHIGYTRDWNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNIVAINPEEPTILQMFIWNNIFF 403 (1236)
T ss_pred eeccCccccchhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCccccCCCchHHHHHHHHHhhhhe
Confidence 9999999999999999999999 7772 999999999999999999999999999999999999
Q ss_pred EeecccccccccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhhhhccchhhcchhhHHHHHhhhhhhhh
Q 000589 440 SFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKG 519 (1403)
Q Consensus 440 s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~d~aa~~aa~~dlkg 519 (1403)
|+++|++ ++|. ..|| |.||++|+++||+|
T Consensus 404 s~~~dv~------~~y~--------------------------~~g~-------------------dvaa~~a~s~dl~g 432 (1236)
T KOG1839|consen 404 SEGFDVR------GHYK--------------------------LGGG-------------------DVAAYAAPSTDLNG 432 (1236)
T ss_pred eeecccc------cccc--------------------------ccch-------------------hHHhhhhccccccc
Confidence 9999999 9998 6788 99999999999999
Q ss_pred hhhhhhcCCCCccccceEEEeecceEEEEEEcC-CccccCCCCCCeeeeccCCCcccccChhhHHHHHHHHhhcCcCCce
Q 000589 520 TKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVL-PGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHT 598 (1403)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~ivdy~G~Rvvaqs~~-Pgi~~~~~~~~v~YGs~d~g~~i~~~~~~~~~~~~~a~~l~lk~H~ 598 (1403)
+++|+.+|++||++|||++||||||||+||+|+ |||+.++++++++||++++||++.+++.|+.++...++.+++++|.
T Consensus 433 ~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l~~d~~~~~~~g~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~ 512 (1236)
T KOG1839|consen 433 KRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGILEGDQSQSVIYGPVDEGKELLSEEAYQRLLERASKLLLISPHP 512 (1236)
T ss_pred cccccccchhhhcchhheeeeccCceEEEEeecCCcchhcccccceeeccccccccccccHHHHHhhcccccccccCCcc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CCeeeeecccccccccccCchhHHHhhhhcCCCCCCCCC----------CCCccccccHHHHHHHHHHHHHHHh
Q 000589 599 VLDGS-GNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTG----------LGSRFCIMRPELITAFCQVEAAEKS 667 (1403)
Q Consensus 599 v~~~~-~~~~~l~~s~e~kgi~G~DgR~YilDl~R~~P~d~~~~~----------~~h~~~~LRpElv~~~~~~~~~~~~ 667 (1403)
|++.. +...+|+.|+|||||+|.|||+||+||+|+||+|++|.+ .||++|+||||||.+||+++.....
T Consensus 513 ~i~~~d~~~~eL~~s~eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i 592 (1236)
T KOG1839|consen 513 VINAKDTVLPELGISFESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFI 592 (1236)
T ss_pred ccchhhccccccccccccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHH
Confidence 99874 478899999999999999999999999999999999987 2899999999999999999664322
Q ss_pred hC-CCCCC-CccCCCCCCCccc-ccccccccccccccccccccccccccchhhhhhhhhccccCCCCCCccccCCCcccc
Q 000589 668 KG-QSKPE-GEAIVNPDSSEAS-GIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTE 744 (1403)
Q Consensus 668 ~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npd~fs~ 744 (1403)
.. .+..+ .+.+......+.. ..........+ ..+...+......-...++..+++..++...++++.||||+|..
T Consensus 593 ~~~e~~~~~~~~ds~~~~~~~d~~~~~~v~~l~~--~is~d~~eS~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s 670 (1236)
T KOG1839|consen 593 VAVENAAEDYGFDSSNPFKKSDAIGLVPVHKLVN--CISADGRESSKLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYS 670 (1236)
T ss_pred HHHhcchhhccCCccccccccchhhHHHHHHHHH--hhccccccccccchHHHHHHHHHHHHHHHhhhcccccCcccccc
Confidence 11 11111 0000000000000 00000000000 00000000000001123344566777888899999999999998
Q ss_pred --cccCCCh--hhHHHhHHHHHHHHHHHhhhhhHHHHHHhhhcCCccCCcchhHHHHHhcCCccchhHHHHhhhC-----
Q 000589 745 --FKLAGSQ--DEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTK----- 815 (1403)
Q Consensus 745 --~~~~~~~--~~~~~d~~~v~~as~~L~~~~IP~~v~d~~~~~~~p~Dg~~Lt~~lH~~GINmRYLG~v~~~~~----- 815 (1403)
+....++ .+...+++.|.++++|+....||.||+++.++.+.|+||++|+++||.+||||||||+++..+.
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 3333333 3567789999999999999999999999999999999999999999999999999999999873
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhhcCCCCCCCCcccccchhhhhhccccCCCCCCCc
Q 000589 816 --HLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSK 893 (1403)
Q Consensus 816 --~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~~ishfLN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 893 (1403)
.+.++.++++-|+++|++||||+.++|.++...++.++||||||+||...++.++.++.....+.. + ....+
T Consensus 751 ~~~~v~l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~--~----~~~~~ 824 (1236)
T KOG1839|consen 751 TYINVALMELGVGEIALRSLKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAK--D----LRTQD 824 (1236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhh--h----hhhhh
Confidence 267899999999999999999999999999999999999999999999888776665543321110 0 00001
Q ss_pred cccccccchhhhhhccccccccccChHHHHHHHHHHHHHHccccCCccHHH------hHHHHHHHHHHHHHHHHHHHHHh
Q 000589 894 SSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDARL------WVKKVSVMRNLCQKVGISVTARK 967 (1403)
Q Consensus 894 ~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~~rf~y~l~~~~~~------~~~~~~lLr~i~~k~Giql~~~~ 967 (1403)
..+ +.. ..+-+-.+|.-|+.+.||..|....+.+|.+........ ...++...+..|.+.|++...+.
T Consensus 825 ~~~----g~~--k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~ 898 (1236)
T KOG1839|consen 825 AAA----GTP--KPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARN 898 (1236)
T ss_pred hcc----CCC--CcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhh
Confidence 111 000 011134689999999999999999999999988766654 34578899999999999999999
Q ss_pred hhcccC---CCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000589 968 YDFNAA---TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCR 1044 (1403)
Q Consensus 968 Y~f~~~---~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~ 1044 (1403)
|.+... ..|...||.++.|++|++.|...++...++.|.....+|.+.+|.+ +.+++.++.++++..|++++.+|.
T Consensus 899 ~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~ 977 (1236)
T KOG1839|consen 899 YDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYR 977 (1236)
T ss_pred ccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHH
Confidence 999884 7899999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA 1124 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a 1124 (1403)
.|+.++..+|++++|+.+.++|+.+.++.+|.|++.+...|.+|+.+++..+....|+..+.++++++...+|++||..+
T Consensus 978 ~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a 1057 (1236)
T KOG1839|consen 978 SLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTA 1057 (1236)
T ss_pred HHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.+..+++.++...++++.|+++++.|+.+...++|+.+..++.++..+++++..++++..|+.+.+.++.++...+|++|
T Consensus 1058 ~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~h 1137 (1236)
T KOG1839|consen 1058 LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDH 1137 (1236)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000589 1205 SRTKDSQNWMKTF 1217 (1403)
Q Consensus 1205 ~~t~~a~~~La~l 1217 (1403)
..+.++..|+...
T Consensus 1138 srt~~S~~~~~~~ 1150 (1236)
T KOG1839|consen 1138 SRTKESSEWLNLS 1150 (1236)
T ss_pred ccchhhHHHHHHh
Confidence 9999999988743
|
|
| >PF13236 CLU: Clustered mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=522.59 Aligned_cols=203 Identities=48% Similarity=0.767 Sum_probs=196.7
Q ss_pred ccHHHhhhhhcCc----hHHH--------------HHHHhhhHHhhcccCCCCCCCCCCCcceeEEcCeeEEeecccccc
Q 000589 387 DWNEELQSCREFP----QELL--------------RRAINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLN 448 (1403)
Q Consensus 387 dWNee~Q~~~elp----~erl--------------~aA~~ga~~vi~~~i~p~np~~~~~~~~~~~nnIffs~~~d~~~~ 448 (1403)
|||||||+++||| +||+ +||++||++||+|+++|+||.++..+|||+||||||||+.|..
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~~p~n~~~~~~~~~y~~nnIff~~~~d~~-- 78 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENILPINPKEIKPGQKYLYNNIFFSFADDSR-- 78 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCcCEEEECCEEEEEecCcc--
Confidence 8999999999999 6652 9999999999999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhhhhccchhhcchhhHHHHHhhhhhhhhhhhhhhcCC
Q 000589 449 HLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADV 528 (1403)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~d~aa~~aa~~dlkg~~~~~~~~~ 528 (1403)
|+|. ..|| |+||++||+|||+|+++|+++++
T Consensus 79 ----~~~~--------------------------~~gg-------------------deaA~~aa~~dLkg~~~~~~~~~ 109 (221)
T PF13236_consen 79 ----GIYE--------------------------NLGG-------------------DEAARKAAGHDLKGVNALNQADI 109 (221)
T ss_pred ----cccc--------------------------cccc-------------------cHHHHHHhhccHHHHHHHHhCCC
Confidence 9998 7899 99999999999999999999999
Q ss_pred CCccccceEEEeecceEEEEEEcCCccccCCCCCCeeeeccCCCcccccChhhHHHHHHHHhhcCcCCceecCCCCCeee
Q 000589 529 PGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFK 608 (1403)
Q Consensus 529 ~~l~~l~~~ivdy~G~Rvvaqs~~Pgi~~~~~~~~v~YGs~d~g~~i~~~~~~~~~~~~~a~~l~lk~H~v~~~~~~~~~ 608 (1403)
+|||+|+|||||||||||+|||+||||++++++++|+|||+|+|++|++|++|+++|+++|+.||||+|.|.+.++ .++
T Consensus 110 ~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~~~vvYGs~d~g~~i~~~~~~~~~l~~~a~~l~Lk~H~v~~~~~-~~~ 188 (221)
T PF13236_consen 110 PGLHTPLTAIVDYRGYRVLAQSILPGILNREQESTVVYGSSDGGKTIHSDEEFHELLKKIAKALNLKPHKVGDSEG-SVE 188 (221)
T ss_pred CCCcccCEEEEEeCCEEEEEEecCCcCCCCCCCceEEECCcCCCCeecCCHHHHHHHHHHHHHhCcCcceecCCCC-cEE
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999998877 899
Q ss_pred eecccccccccccCchhHHHhhhhcCCCCCCCC
Q 000589 609 LAAPVECKGIVGSDDRHYLLDLMRVTPRDANYT 641 (1403)
Q Consensus 609 l~~s~e~kgi~G~DgR~YilDl~R~~P~d~~~~ 641 (1403)
||+|+|+|||+|+|||+|||||+|+||||+||.
T Consensus 189 l~~s~d~kg~~G~D~R~YilDl~R~~P~d~~f~ 221 (221)
T PF13236_consen 189 LYGSADIKGIIGSDGRYYILDLARTFPPDVNFL 221 (221)
T ss_pred EEeeeeeEEEEcCCCCEEEEeccccCCCCcCcC
Confidence 999999999999999999999999999999984
|
|
| >PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=326.59 Aligned_cols=165 Identities=42% Similarity=0.787 Sum_probs=147.0
Q ss_pred hhcCCccCCcchhHHHHHhcCCccchhHHHHhhh-CCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHh
Q 000589 781 CTLEVSPMDGQTLTEALHAHGINIRYIGKVADGT-KHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNC 859 (1403)
Q Consensus 781 ~~~~~~p~Dg~~Lt~~lH~~GINmRYLG~v~~~~-~~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~~ishfLN~ 859 (1403)
+++++.|+||.+|++.||++||||||||+|++.+ +.+++|+.||++|||||++|||||.+||.++...++.+|+|||||
T Consensus 1 ~~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~~~~~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 1 CSLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRSVPQSELSSAVSHFLNC 80 (169)
T ss_pred CCccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 4678899999999999999999999999999997 458999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccccchhhhhhccccCCCCCCCccccccccchhhhhhccccccccccChHHHHHHHHHHHHHHccccCC
Q 000589 860 FFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP 939 (1403)
Q Consensus 860 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~~rf~y~l~ 939 (1403)
|||+..++.|+....+. .+...+.++.+|.++|+..+|+.|.+++..+|+|+++
T Consensus 81 llg~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~ 134 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEK--------------------------NSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELP 134 (169)
T ss_pred hhCCCccccccccccch--------------------------hccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCc
Confidence 99998887443221110 0112445678999999999999999999999999999
Q ss_pred ccHHH---hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000589 940 EDARL---WVKKVSVMRNLCQKVGISVTARKYDFN 971 (1403)
Q Consensus 940 ~~~~~---~~~~~~lLr~i~~k~Giql~~~~Y~f~ 971 (1403)
.+|.. .++++++||++|+++|||+..++|.|+
T Consensus 135 ~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~ 169 (169)
T PF12807_consen 135 EDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT 169 (169)
T ss_pred hHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence 99999 899999999999999999999999884
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=258.07 Aligned_cols=286 Identities=28% Similarity=0.358 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....+..+|..|..+|+|+.|+.++.+|+++.....|..|+.++..+..+|.+|..+++|.+|+.+|++|+.+.+.++|.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 35555569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+||.++.++.|||.+|...|++++|..++++|++|.+..+|..++.+...+.+++.++..++++++|+.+|++++++...
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.+|++++.++..+.+||.+|..+|+|++|.+++++|+.+.++..|..+..+...+..|+..| ...+++.+|...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~------~~~k~~~~a~~l 431 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY------EELKKYEEAEQL 431 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH------HHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 888999999999
Q ss_pred HHHHHHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHHHHHHH--HhhcCCCCccccc
Q 000589 1237 ASTQKAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASANNSLN--AALLGETLPRGRG 1290 (1403)
Q Consensus 1237 l~~qkALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~ 1290 (1403)
+. ++..|.+ .||++...+.+|+ .+|+++.|.++.+++++ ....|..++....
T Consensus 432 ~~--~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
T KOG1840|consen 432 FE--EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVED 493 (508)
T ss_pred HH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhH
Confidence 98 8877775 6999999999999 89999999999999998 5555666665444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=245.29 Aligned_cols=298 Identities=23% Similarity=0.222 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000589 1016 EAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL 1095 (1403)
Q Consensus 1016 eA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~ 1095 (1403)
.....+...+.+..+..+..+|....+..+||..|..+|+|+.|+..+++|+++.++..|.+|+.......++|.+|..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL 254 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence 56666666677777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000589 1096 NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIA 1175 (1403)
Q Consensus 1096 G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~ 1175 (1403)
++|.+|+.+|++|+.+.+..+|.+||.++.++.|||..|...|+|++|..++++|++|.++..|..++..+..+.+++.+
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----hCh
Q 000589 1176 FNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-----AHP 1250 (1403)
Q Consensus 1176 y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-----~~p 1250 (1403)
+..++++++|+.++++++.|+...+|++|+.+...+.+||.+| ..+|++.+|.+++. +|+.+.+ .++
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~------~~~gk~~ea~~~~k--~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY------LKMGKYKEAEELYK--KAIQILRELLGKKDY 406 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------HHhcchhHHHHHHH--HHHHHHHhcccCcCh
Confidence 9999999999999999999999999999999999999999999 99999999999999 9999885 477
Q ss_pred HHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHH
Q 000589 1251 DLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPP 1325 (1403)
Q Consensus 1251 ~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~ 1325 (1403)
.....+.+|| +.+++.+|..+|.++.. ...+|+.||.+...+ ...+-+|..+|+++.|+++
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~--------------~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY--------------LNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH--------------HHHHHHHHHcccHHHHHHH
Confidence 8888889998 78899999999999999 777899999988844 3333478999999999999
Q ss_pred HHHHHHHHhc
Q 000589 1326 LTQLLNIINS 1335 (1403)
Q Consensus 1326 l~qaL~i~~s 1335 (1403)
...+++.-..
T Consensus 473 ~~~~~~~~~~ 482 (508)
T KOG1840|consen 473 EEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHH
Confidence 9998866553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=248.94 Aligned_cols=237 Identities=19% Similarity=0.203 Sum_probs=154.8
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.+......|.+|.++|-++..+|+...|+..|.+|+.+ +|..+.+|.+||.+|..++.|++|+..|.+|+.+
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33333444556666666666677777777777776666 5666666777777777777777777777776665
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.|..+.++.|||.+|+.+|..+.|+..|++|+++ .|....+|+|||..+-..|+..+|..+|.+
T Consensus 282 --------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 282 --------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred --------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 3556666667777777777777777777776654 355556667777777777777777777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ 1229 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~ 1229 (1403)
||.++ +..+.++++||.+|..+|.+++|..+|++|+++ .|..+.+.++|+.+| .++|+
T Consensus 346 aL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~------kqqgn 403 (966)
T KOG4626|consen 346 ALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIY------KQQGN 403 (966)
T ss_pred HHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHH------Hhccc
Confidence 76665 344556666777777777777777777766665 345566666676666 66677
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1230 KGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1230 ~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+++|+.+|. +.++-.|..+.++.++| .+|+...|+.+|.+|+.
T Consensus 404 l~~Ai~~Yk-----ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 404 LDDAIMCYK-----EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHH-----HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 777776666 33344466666666666 56666677777776665
|
|
| >PF15044 CLU_N: Mitochondrial function, CLU-N-term | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-24 Score=193.98 Aligned_cols=76 Identities=43% Similarity=0.851 Sum_probs=74.2
Q ss_pred cCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecCCCHHHHHHHHHHHHH
Q 000589 100 LNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRD 179 (1403)
Q Consensus 100 ~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~Y~~~~a~~Hv~r~rd 179 (1403)
|+++|+|+||||+|++.|+||+||||+|.++| ++||+|.||++++|+++ +|+|+||++|||+|+||.||+||||
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g-----~~L~~~~el~~i~~~~~-~~~L~lve~pYt~r~a~~Hv~r~rd 74 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNG-----QRLDDFVELSEIEGIKD-GCVLELVEEPYTEREAREHVRRVRD 74 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECC-----CccCCchhhhhhhCCCC-CcEEEEEecCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999 88999999999999999 9999999999999999999999999
Q ss_pred hh
Q 000589 180 LL 181 (1403)
Q Consensus 180 ~~ 181 (1403)
+|
T Consensus 75 li 76 (76)
T PF15044_consen 75 LI 76 (76)
T ss_pred hC
Confidence 86
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-22 Score=230.27 Aligned_cols=239 Identities=19% Similarity=0.218 Sum_probs=218.6
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
.+.+.-++....+|+++|.+|...+.|++|+.+|.+|+.+ .|..+.++.+||.+|+.+|..+-|+..|++|+
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 3444445556788999999999999999999999999998 67889999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000589 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYL 1147 (1403)
Q Consensus 1068 ~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~l 1147 (1403)
.+ .|....+|+|||..+-..|+..+|..+|.+|+.+. |..+.+++|||.+|.++|.+++|..+|
T Consensus 314 ~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 314 EL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred hc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHH
Confidence 97 57888999999999999999999999999999874 555677999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 000589 1148 QEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQ 1227 (1403)
Q Consensus 1148 ekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~q 1227 (1403)
++|++.. |..+.++.+||.+|.++|++++|+.+|++|+.| .|..++++.++|..| ..+
T Consensus 378 ~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~------ke~ 435 (966)
T KOG4626|consen 378 LKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTY------KEM 435 (966)
T ss_pred HHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHH------HHh
Confidence 9999976 778899999999999999999999999999998 689999999999998 899
Q ss_pred hcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1228 KQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1228 g~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
|+...|++++. ....-+|..+.++.+|| ..|+..+|+..|+.||+
T Consensus 436 g~v~~A~q~y~-----rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 436 GDVSAAIQCYT-----RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hhHHHHHHHHH-----HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999 44556799999999999 78999999999999998
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=229.86 Aligned_cols=776 Identities=22% Similarity=0.264 Sum_probs=455.0
Q ss_pred cCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCCCCcccHHHHHHHhcHHHHHHHHHHHHhhhcCCCCC
Q 000589 263 LVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFE 342 (1403)
Q Consensus 263 ~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~~~~hsL~~Ll~~~S~~F~~~~~~l~~~~~~~~~~~ 342 (1403)
-.+|.+-+-+..+.|+..|+-+.+.|||- +++...++|+++||| .|..|..+|+.+++.+.+++|+.
T Consensus 81 ~~~d~~~~~~~i~~~~~~~~l~~v~~pY~-----------~re~~~Hv~~vrdlL--~~~~~~sa~~~~~~a~~~~~~~~ 147 (1236)
T KOG1839|consen 81 SKLDYFHIKKKISSGKPGCVLASVLGPYT-----------PREARLHVHSVRDLL--SSSDFASAYSPLMKAFFDHNKLG 147 (1236)
T ss_pred cccccccceeeecCCCcceEEEEecccCC-----------hHHHHHHHHHHHHHH--hcCChhhhhcchhhhhhhhcccc
Confidence 56889999999999999999999999998 788888999999999 88899999999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCCCCChhhhhHhhhhccCCCCCCCC--CccHHHhhhhhcCchHHHHHHHhhhHHhhcccCCC
Q 000589 343 NVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSYGSELIGMQ--RDWNEELQSCREFPQELLRRAINGAIGVISRCIPP 420 (1403)
Q Consensus 343 ~~~~~~~~~~wl~~~~~~~~~~d~~r~e~~~~~~~g~~~~~~~--rdWNee~Q~~~elp~erl~aA~~ga~~vi~~~i~p 420 (1403)
++++....++|.+|.. .......++.+++. ||.++..+. --|+.+|-.+.-+ |
T Consensus 148 ~i~~~~~~~t~~~p~d-~~~~~~~lp~~~e~---~~~~~~~~~~~~~~~~~~~~La~s---------------------p 202 (1236)
T KOG1839|consen 148 NIPLGDRKNTWVDPED-CKPPFPDLPGEDER---WGGDGGEGRSGPKWAKCFRVLAFS---------------------P 202 (1236)
T ss_pred CCCccccccCCCCccc-cCCCCCCCCccccc---cCCCCCcCCCCcccchHHHHHhcC---------------------C
Confidence 9999999999999863 44455667778876 445544222 2477777777644 3
Q ss_pred CCCCCCC---Ccc-eeEEcCeeEEeecccc---cccccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhh
Q 000589 421 INPTDPE---CFH-MYVHNNIFFSFAVDSD---LNHLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVEL 493 (1403)
Q Consensus 421 ~np~~~~---~~~-~~~~nnIffs~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 493 (1403)
-||-.+. +++ ||++ +..+|+. |.-.++|-|.|- + .+..-|..- .+. |+-+=. +-+
T Consensus 203 ~nppp~~~~~~g~l~yL~-----v~t~e~~~~~it~~~~gfyvNn--s--~~~~fdP~p-~~~----~~ls~s---l~~- 264 (1236)
T KOG1839|consen 203 CNPPPERRVLDGDLFYLH-----VVTLEGSVFHITAIIKGFYVNN--S--QSSKFDPSP-SGS----GDLSHS---LIR- 264 (1236)
T ss_pred CCCCCcceeecccEEEEE-----EEEeeccEEEEEEeeeeEEEec--c--ccCCCCCCC-CCC----ccchhh---HHH-
Confidence 4443332 222 2322 2222221 111233555521 0 000000000 000 000000 000
Q ss_pred hhccchhhcchhhHHHHHhhhhhhhhhhhhhhcCCCCccccceEEEeecceEEEEEEcCCccccCC----CCCCeeeecc
Q 000589 494 AQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGD----KSDSLLYGSV 569 (1403)
Q Consensus 494 ~~~~~~~~~~~~d~aa~~aa~~dlkg~~~~~~~~~~~l~~l~~~ivdy~G~Rvvaqs~~Pgi~~~~----~~~~v~YGs~ 569 (1403)
. -.++.+.=..++..--+++..--+.+++-.+ |--+-|++-.+.| ..| ++--.-|+.-
T Consensus 265 l----l~~~S~kfkk~~~~~~~~~s~~~~~er~~~~-----------~~~~sw~~~~~~~---~~d~~r~~~A~~~~~~~ 326 (1236)
T KOG1839|consen 265 L----LASLSPKFKKAFQTILKKLSSEELAERVLLK-----------TPDESWIVHPLPH---LADAARAEEALTGYYLE 326 (1236)
T ss_pred H----HHhhChHHHHHHHHHHHHHhhhhHHHhcccc-----------CCCccccccCCCc---hHHHHhhHHHhccceec
Confidence 0 0111111222333333333333334433322 5666777776666 111 1112257777
Q ss_pred CCCcccccChhhHHH--------HHHHHhhcCcCCceecCCCCCeeeeecccccccccc---------cCchhHHHh---
Q 000589 570 DNGKKISWNEDFHSK--------VLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVG---------SDDRHYLLD--- 629 (1403)
Q Consensus 570 d~g~~i~~~~~~~~~--------~~~~a~~l~lk~H~v~~~~~~~~~l~~s~e~kgi~G---------~DgR~YilD--- 629 (1403)
+-|-+-.||+++... -+.++...++..= +.-+.-....|-++ +++--+++-
T Consensus 327 ~~G~~rdwNee~Qt~re~~~~~l~dr~~rer~~~Kv---------~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i 397 (1236)
T KOG1839|consen 327 HIGYTRDWNEELQTTREMPHKDLPDRGARERNLNKV---------RGDFVKAATRGALAVISGNIVAINPEEPTILQMFI 397 (1236)
T ss_pred cCccccchhhhhhhhhhcCccccchhhhhhhccccc---------hhhhcccccccccccccCccccCCCchHHHHHHHH
Confidence 778888888776432 2345555555420 00111111222111 122222111
Q ss_pred -----hhhcCCCCCCCCCCCCccccccHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCcccccccccccccccccccc
Q 000589 630 -----LMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSD 704 (1403)
Q Consensus 630 -----l~R~~P~d~~~~~~~h~~~~LRpElv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1403)
+.+-|+.. .|. |+..+|..+.++....-+-+. .....+.......++...... +-..
T Consensus 398 ~~nIf~s~~~dv~------~~y------~~~g~dvaa~~a~s~dl~g~r---~~n~~d~~~l~~Lgt~~vDy~---g~rv 459 (1236)
T KOG1839|consen 398 WNNIFFSEGFDVR------GHY------KLGGGDVAAYAAPSTDLNGKR---LYNTVDVPGLKTLGTTVVDYR---GYRV 459 (1236)
T ss_pred Hhhhheeeecccc------ccc------cccchhHHhhhhccccccccc---cccccchhhhcchhheeeecc---CceE
Confidence 01111111 121 777788887652111000000 000001111111111110000 0000
Q ss_pred cccccccccchhhhhhhhhccccCCCCCCccccCCCcccccccCCChhhHHHhHHHHHHHHHHHh----------hhhhH
Q 000589 705 VSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEIAADEENVRKVSLYLA----------DVVLP 774 (1403)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npd~fs~~~~~~~~~~~~~d~~~v~~as~~L~----------~~~IP 774 (1403)
..|...........+++. ...........+.. -.+|. .++..++.++. +.+.|
T Consensus 460 ~Aq~i~~p~~l~~d~~~~-~~~g~~~~~K~~~~-~e~~~---------------~l~~~~s~~l~i~~h~~i~~~d~~~~ 522 (1236)
T KOG1839|consen 460 VAQVIINPGILEGDQSQS-VIYGPVDEGKELLS-EEAYQ---------------RLLERASKLLLISPHPVINAKDTVLP 522 (1236)
T ss_pred EEEeecCCcchhcccccc-eeeccccccccccc-cHHHH---------------HhhcccccccccCCccccchhhcccc
Confidence 000000000000000000 00000000001111 11222 23333333332 11556
Q ss_pred HHHHHhhhcCCccCCcc-hhHHHHHhcCCccchhH--HHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHH
Q 000589 775 KFIQDLCTLEVSPMDGQ-TLTEALHAHGINIRYIG--KVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGP 851 (1403)
Q Consensus 775 ~~v~d~~~~~~~p~Dg~-~Lt~~lH~~GINmRYLG--~v~~~~~~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~ 851 (1403)
++...+.+..+.|.||+ .|+++||.++..||||| ++.++..+.||...+|..|||.|.++|.+..++..+.
T Consensus 523 eL~~s~eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e------ 596 (1236)
T KOG1839|consen 523 ELGISFESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVE------ 596 (1236)
T ss_pred ccccccccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHh------
Confidence 66666777888999998 99999999999999999 9999998999999999999999999999888775432
Q ss_pred HHHHHHHhhcCCCCCCCCcccccchhhhhhccccCCCCCCCccccccccchhhhhhccccccccccChHHHHHHHHHHHH
Q 000589 852 AIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAK 931 (1403)
Q Consensus 852 ~ishfLN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~ 931 (1403)
||.=
T Consensus 597 ------~~~~---------------------------------------------------------------------- 600 (1236)
T KOG1839|consen 597 ------NAAE---------------------------------------------------------------------- 600 (1236)
T ss_pred ------cchh----------------------------------------------------------------------
Confidence 1110
Q ss_pred HHccccCCccHHHhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHc
Q 000589 932 LKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAE 1011 (1403)
Q Consensus 932 ~rf~y~l~~~~~~~~~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~ 1011 (1403)
+|.++...+|...|+..+.++.+....-..+.+ -...
T Consensus 601 -----------------------------------~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~--------eS~~ 637 (1236)
T KOG1839|consen 601 -----------------------------------DYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR--------ESSK 637 (1236)
T ss_pred -----------------------------------hccCCccccccccchhhHHHHHHHHHhhccccc--------cccc
Confidence 333444444444444444444433322222221 0011
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
-..++|.+++..++...-...++.+....-++.. +.+.+..+++.+|..+.++++++.++.+|.++|+++..|..++.+
T Consensus 638 ~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~ 716 (1236)
T KOG1839|consen 638 LSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVF 716 (1236)
T ss_pred cchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhcccccee
Confidence 1233677777777766666666655544444444 889999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH---
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC--- 1168 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~--- 1168 (1403)
++....+.+|+.+-.+++.+.-..++.-+|..+..|.+.+.+-...+ +-++++++.+++.+.+..+.++...+.+
T Consensus 717 p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~SH~l 794 (1236)
T KOG1839|consen 717 PYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAASHAL 794 (1236)
T ss_pred eecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999889988877777766655555 6677777776666555544444333322
Q ss_pred --------------------------------------------------------------------------------
Q 000589 1169 -------------------------------------------------------------------------------- 1168 (1403)
Q Consensus 1169 -------------------------------------------------------------------------------- 1168 (1403)
T Consensus 795 n~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~ 874 (1236)
T KOG1839|consen 795 NCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLK 874 (1236)
T ss_pred HHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhh
Confidence
Q ss_pred ------------------------------------------------------------HHHHHHHHHHcCCHHHHHHH
Q 000589 1169 ------------------------------------------------------------YHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1169 ------------------------------------------------------------~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
...-+......|.+.+|.+
T Consensus 875 ~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~- 953 (1236)
T KOG1839|consen 875 NGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE- 953 (1236)
T ss_pred cccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-
Confidence 1111222233445555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHH---
Q 000589 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-----AHPDLIHAFQAVA--- 1260 (1403)
Q Consensus 1189 lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-----~~p~~~~a~~~La--- 1260 (1403)
.-+++..+...+|.-|+.+...+..|+.++ ...+++++|+.... +|.-+.+ ++|.....+.+++
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~------~~~~d~~~Ai~~~~--ka~ii~eR~~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLS------NRLGDNQEAIAQQR--KACIISERVLGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHH------hhhcchHHHHHhcc--cceeeechhccCCCHHHHHHhhHHHHHH
Confidence 556666777777888888888888888888 88899999998776 5544433 6899999999998
Q ss_pred -HhCChHHHHHHHHHHHH--HhhcCCCCccccchHH
Q 000589 1261 -AAGGSGNSGASANNSLN--AALLGETLPRGRGFDE 1293 (1403)
Q Consensus 1261 -~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~~~e 1293 (1403)
..++...|...+.+++. .-..|+.||.+..+..
T Consensus 1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~ 1061 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFI 1061 (1236)
T ss_pred HhccCccchhhhHHHHHHhhccccCCCCCchhhhhh
Confidence 66788889999999888 5567889998877543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=212.31 Aligned_cols=295 Identities=14% Similarity=0.088 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL---------- 1067 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL---------- 1067 (1403)
...+.++|.+|...|++++|+..+.+++++ .|....++..+|.+|..+|++++|+..+..++
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 346788888888889999999888888887 45667788888888888888888876543322
Q ss_pred --------------------------------------------------------------------------------
Q 000589 1068 -------------------------------------------------------------------------------- 1067 (1403)
Q Consensus 1068 -------------------------------------------------------------------------------- 1067 (1403)
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred ---HHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1068 ---IINERCLG--LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDT 1142 (1403)
Q Consensus 1068 ---~i~er~lg--~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~de 1142 (1403)
..+++.+. ...+....++.++|.++..+|++++|+.+|++++.+ +|....++.++|.++..+|++++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 12222221 124666778889999999999999999999999975 46667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 000589 1143 ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMREL 1222 (1403)
Q Consensus 1143 Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~ 1222 (1403)
|+.+|++++++. +....+++.+|.+|...|++++|+.+|++++.+ +|....++..++.++
T Consensus 384 A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~---- 443 (615)
T TIGR00990 384 AEEDFDKALKLN--------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQ---- 443 (615)
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHH----
Confidence 999999998863 344568899999999999999999999999886 344456677888887
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhh-cCCCCccc---------
Q 000589 1223 QMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAAL-LGETLPRG--------- 1288 (1403)
Q Consensus 1223 ~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~-~G~~~p~~--------- 1288 (1403)
..+|++++|+..+. +++...+.++. ++..+| .+|++++|+.+|++|+.... ....+...
T Consensus 444 --~~~g~~~eA~~~~~--~al~~~P~~~~---~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 444 --YKEGSIASSMATFR--RCKKNFPEAPD---VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred --HHCCCHHHHHHHHH--HHHHhCCCChH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88999999999999 66665544444 444444 88999999999999998322 11111111
Q ss_pred ----cchHHHHHHHHHHHH-------HHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1289 ----RGFDERAARAAAEVR-------KKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1289 ----~~~~era~~a~~e~r-------~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
...++.+......+. ......|.++..+|++++|+..|++++++.++
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 111222222222221 11223377889999999999999999998765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=204.23 Aligned_cols=274 Identities=18% Similarity=0.161 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+..+|..++..|+|++|+.+|.+++.+. |+ ...|.++|.+|..+|++++|+..+.+|+.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVVEDTTAALEL------- 189 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 36778899999999999999999999999872 22 347999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------------------------
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL--------------------------------------------- 1111 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l--------------------------------------------- 1111 (1403)
.|....++.++|.+|..+|++++|+..|..+..+
T Consensus 190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 4677889999999999999999998766443211
Q ss_pred ------------------------------------------------HHhhc--CCCCHHHHHHHHHHHHHHHHcCCHH
Q 000589 1112 ------------------------------------------------LSLSS--GPDHPDVAATFINVAMMYQDIGKMD 1141 (1403)
Q Consensus 1112 ------------------------------------------------~~~~~--g~d~p~~a~~~~nLA~iy~~~g~~d 1141 (1403)
+...+ +..+|..+.++.++|.++..+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 00000 0112444455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000589 1142 TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221 (1403)
Q Consensus 1142 eAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~ 1221 (1403)
+|+.+|++++.+. |....++..+|.++...|++++|+.++++++++ .+++ ..++..++.++
T Consensus 349 eA~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~--- 409 (615)
T TIGR00990 349 EALADLSKSIELD--------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLH--- 409 (615)
T ss_pred HHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHH---
Confidence 6666666666542 334445566666666666666666666666553 1222 33445555555
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHH
Q 000589 1222 LQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAAR 1297 (1403)
Q Consensus 1222 ~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~ 1297 (1403)
...|++++|+..++ +++++ .|+...++.++| .+|++++|+..|+++++.. |...
T Consensus 410 ---~~~g~~~~A~~~~~--kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~-------- 467 (615)
T TIGR00990 410 ---FIKGEFAQAGKDYQ--KSIDL---DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAP-------- 467 (615)
T ss_pred ---HHcCCHHHHHHHHH--HHHHc---CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCh--------
Confidence 55666666666666 33333 333334444444 5566666666666666421 1111
Q ss_pred HHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1298 AAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1298 a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
......|.++...|++++|+..|++++.+..
T Consensus 468 ------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 468 ------DVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 1333457788889999999999999998854
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=182.43 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+..+|.++...|++++|+..|.+++.+ .|....++..++.++..+|++++|+..+++++...
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------- 174 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------- 174 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------
Confidence 34555566666666666666666666555 33344455556666666666666666666554431
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
|.....+..++ .+...|++++|+..+++++... + +........++.++...|++++|+..|++++.+.
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-----~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---- 242 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-----A--LERQESAGLAVDTLCAVGKYQEAIQTGESALARG---- 242 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----C--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 11222333332 2555666666666666554321 0 1111233456777788888888888888887642
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKL----SHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~e----Ai~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
+....++.+||.+|...|++++ |+.++++++.+ +|....++..++.++ ..+|++++|+
T Consensus 243 ----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l------~~~g~~~eA~ 304 (656)
T PRK15174 243 ----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADAL------IRTGQNEKAI 304 (656)
T ss_pred ----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH------HHCCCHHHHH
Confidence 3446677888888888888885 77888887764 334456677777777 7888999998
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhh
Q 000589 1235 NAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKG 1310 (1403)
Q Consensus 1235 ~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G 1310 (1403)
..++ +++++.+.++ .++..++ ..|++++|+..|++++... |.... .....|
T Consensus 305 ~~l~--~al~l~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~~--------------~~~~~a 359 (656)
T PRK15174 305 PLLQ--QSLATHPDLP---YVRAMYARALRQVGQYTAASDEFVQLAREK------GVTSK--------------WNRYAA 359 (656)
T ss_pred HHHH--HHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccchH--------------HHHHHH
Confidence 8888 6655544444 3444444 7788999998888887632 22111 111224
Q ss_pred HHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1311 LLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1311 ~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.++...|++++|+..|++++++...
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4667789999999999999888554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-14 Score=168.95 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+..|..+...|++++|+.+|.+++.. +|....++..+|.+|...|++++|+.++++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3444555666666666666666666654 23444556666666666666666666666554420 00111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..||.+|...|++++|+.+|.+++.. +|....++..++.++...|++++|+..+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 22345566666666666666666666665532 2333445556666666666666666666665543210
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
.........+..+|.++...|++++|+.++++++++ .+....++..++.++ ...|++++|+..+.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~------~~~g~~~~A~~~~~- 238 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLA------LAQGDYAAAIEALE- 238 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHH------HHCCCHHHHHHHHH-
Confidence 011122334455666666666666666666666553 122233444455554 55666666666665
Q ss_pred HHHHHHHhhChHH-HHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKAHPDL-IHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~~p~~-~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
++++. .|.. ..++..++ ..|++++|...+++++.
T Consensus 239 -~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 239 -RVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred -HHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33322 2221 12222222 55666666666666554
|
|
| >PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=152.08 Aligned_cols=88 Identities=48% Similarity=0.627 Sum_probs=64.7
Q ss_pred cccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCC---CCcccHHHHHHHh
Q 000589 244 KCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKAN---SEATTLIGLLQKI 320 (1403)
Q Consensus 244 ~~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~---~~~hsL~~Ll~~~ 320 (1403)
..|+.|.+|.-=| -.|||+||+|+|+||++||||+|.+|||||+|+.+.|||.|.+.. ..+|||++||++|
T Consensus 15 ~~V~~i~vs~~Lp------~~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~i 88 (108)
T PF05303_consen 15 FAVKEISVSEKLP------RTGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSI 88 (108)
T ss_dssp GGSSEEEE--SS-------EETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH
T ss_pred HHhhEEEecccCC------CCCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHH
Confidence 3678888876544 469999999999999999999999999999999999999876433 3589999999999
Q ss_pred cHHHHHHHHHHHHhhhc
Q 000589 321 SSKFKKAFREILDRKAS 337 (1403)
Q Consensus 321 S~~F~~~~~~l~~~~~~ 337 (1403)
||.|++.|.+.|.++++
T Consensus 89 SP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 89 SPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999998877654
|
; PDB: 1SGO_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=158.90 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+-.-|.-++..|++...+.+|+.|++.-. .+-.....+|..||.+|+.+++|++|++|...-+.+.+ .+|. ..
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-~lgd-kl 92 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-LLGD-KL 92 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-Hhcc-hh
Confidence 344457888999999999999999998732 23445677899999999999999999999988877654 3343 34
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC--------------------
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK-------------------- 1139 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~-------------------- 1139 (1403)
.-+.+-.|||..+-.+|.|++|+.+..+-+.+.+.. .+......+++|||.+|...|+
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 456778899999999999999999999999988876 3456678999999999998764
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
++.|.++|++-|++.+++. +......++-+||+.|+.+|+|+.|+.+.+.-+.|.++. |+ ......++.+|+..+
T Consensus 171 l~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GD-rAaeRRA~sNlgN~h- 245 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GD-RAAERRAHSNLGNCH- 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hh-HHHHHHhhcccchhh-
Confidence 4567777777777776652 334567789999999999999999999999999987754 43 345567888999988
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCCCccccch
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGETLPRGRGF 1291 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~~p~~~~~ 1291 (1403)
.-.|+++.|+++|. +++.+.. +....++..+.|| -..++++|+.|+++-|. ...++..--..
T Consensus 246 -----iflg~fe~A~ehYK--~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~--- 315 (639)
T KOG1130|consen 246 -----IFLGNFELAIEHYK--LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL--- 315 (639)
T ss_pred -----hhhcccHhHHHHHH--HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---
Confidence 88999999999998 5544432 3444555566666 45789999999999887 22222211111
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1292 DERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1292 ~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
......|+.+...|...+|+...++++.+...
T Consensus 316 ------------RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 316 ------------RACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred ------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12334467778889999999999988887665
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=158.70 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....|..+|..|+..++|++|+++..--+.+.+-+. +....+.+..+||.++-.+|.|++|+.++.+-+.+.++. .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--g 129 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--G 129 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--h
Confidence 355677899999999999999999888777755442 334567788899999999999999999999999998776 3
Q ss_pred CChhHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQ--------------------TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~--------------------~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
|......+|+|||.+|...|+ ++.|.++|..-+++.+.. .+......+|-+||..|+-
T Consensus 130 Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYl 207 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYL 207 (639)
T ss_pred HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeee
Confidence 445667899999999998774 456677777777776654 3445667899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000589 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKT 1216 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~ 1216 (1403)
+|+|+.|+.+.+.-|++.++. |. ....-.++.+||+++.-.|+|+.|+++|+.++.+..+. |. ...-+++.+.|+.
T Consensus 208 LGdf~~ai~~H~~RL~ia~ef-GD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~-r~vEAQscYSLgN 283 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEF-GD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GN-RTVEAQSCYSLGN 283 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHh-hh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHhhh
Confidence 999999999999999998775 32 24455789999999999999999999999999987764 33 2344556667777
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1217 FKMRELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1217 l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
.| .-.+++++||.+.. +-|.|.. +......+++.|| ..|..++|+.+.++.++
T Consensus 284 ty------tll~e~~kAI~Yh~--rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 284 TY------TLLKEVQKAITYHQ--RHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HH------HHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77 77889999999998 7777765 4455667777777 77999999999999888
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-13 Score=159.36 Aligned_cols=279 Identities=14% Similarity=0.085 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++.+|.++...|++++|+.++++++..- .........++..||.+|...|++++|+.+|.+++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------- 136 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------- 136 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------
Confidence 36678889999999999999999999887631 1112234568899999999999999999999999864
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.+....++..++.++...|++++|+..+++++.... ..........+..+|.++...|++++|+.+|+++++..
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 210 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-- 210 (389)
T ss_pred -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--
Confidence 345567889999999999999999999999886421 11122345667899999999999999999999999863
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+....++..+|.+|...|++++|+.++++++... + .....++..++.+| ...|++++|+..
T Consensus 211 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~~~l~~~~------~~~g~~~~A~~~ 271 (389)
T PRK11788 211 ------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P--EYLSEVLPKLMECY------QALGDEAEGLEF 271 (389)
T ss_pred ------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h--hhHHHHHHHHHHHH------HHcCCHHHHHHH
Confidence 3345678899999999999999999999998741 1 12244566677777 889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhh
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRP 1315 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~ 1315 (1403)
++ ++++..++.+ ....+..+. ..|++++|...++++++. +|...... .+ .........
T Consensus 272 l~--~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~------~P~~~~~~-----------~l-~~~~~~~~~ 330 (389)
T PRK11788 272 LR--RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR------HPSLRGFH-----------RL-LDYHLAEAE 330 (389)
T ss_pred HH--HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh------CcCHHHHH-----------HH-HHHhhhccC
Confidence 88 5555433322 112222222 789999999999999874 22222200 01 111111222
Q ss_pred CCCchhhhHHHHHHHHH
Q 000589 1316 HGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1316 ~g~~~eA~~~l~qaL~i 1332 (1403)
.|+..+|+..+++.+..
T Consensus 331 ~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 331 EGRAKESLLLLRDLVGE 347 (389)
T ss_pred CccchhHHHHHHHHHHH
Confidence 57889999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=188.13 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHRE-----------VANCCRYLAMVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~-----------~a~a~~~LA~iy~~~G~~~eAi~~~~k 1065 (1403)
.+..++.+|.++..+|++++|+.+|++++++. ++++. ....+..+|.++...|++++|+.+|++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 36778899999999999999999999999873 22221 122344568899999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH----------------------
Q 000589 1066 ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV---------------------- 1123 (1403)
Q Consensus 1066 AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~---------------------- 1123 (1403)
++.+ +|....++..||.++..+|++++|+.+|++++.+. ++++..
T Consensus 377 Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 377 ARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9987 35556788999999999999999999999999752 111110
Q ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1124 -----------------AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1124 -----------------a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
...+..+|.++...|++++|+.+|++++++. |....+++.+|.+|...|++++|+
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 1234457788888999999999999999864 445567899999999999999999
Q ss_pred HHHHHHHHH
Q 000589 1187 QHEKKTYDI 1195 (1403)
Q Consensus 1187 ~~lkkAl~i 1195 (1403)
..+++++..
T Consensus 516 ~~l~~al~~ 524 (1157)
T PRK11447 516 ALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHc
Confidence 999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=186.67 Aligned_cols=280 Identities=16% Similarity=0.133 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------------
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREV------------------------------------- 1039 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~------------------------------------- 1039 (1403)
.+..++.+|.++..+|++++|+.+|++++.+. +.+...
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678889999999999999999999998762 111110
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1040 --ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1040 --a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
...+..+|.++...|++++|+.+|++++.+ .|+...++..+|.+|...|++++|+..|++++.+
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~------ 524 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ------ 524 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 123445677788899999999999999987 3556678899999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HH------------------------HHhCCCcHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK---------NE------------------------RLLGEEHIQ 1164 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l---------~~------------------------~~~G~~~~~ 1164 (1403)
+|.....++.+|..+...+++++|+.+++++... .. ..+. .+|.
T Consensus 525 --~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~ 601 (1157)
T PRK11447 525 --KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPP 601 (1157)
T ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCC
Confidence 2333445667777777888888888777653210 00 0000 1223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAID 1244 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALe 1244 (1403)
....+..||.+|...|++++|+.+|++++.+ +|....++..++.++ ..+|++++|+..+. +++.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~------~~~g~~~eA~~~l~--~ll~ 665 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVD------IAQGDLAAARAQLA--KLPA 665 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH--HHhc
Confidence 3456778999999999999999999999875 233455677888877 88899999999888 4443
Q ss_pred HHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCch
Q 000589 1245 ILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPA 1320 (1403)
Q Consensus 1245 i~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~ 1320 (1403)
..|+...++..+| ..|++++|..+|++++... +..+.... .+ ......+.++..+|+++
T Consensus 666 ---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---~~~~~~~~---~a--------~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 666 ---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA---KSQPPSME---SA--------LVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred ---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC---ccCCcchh---hH--------HHHHHHHHHHHHcCCHH
Confidence 3444344444444 7899999999999988632 11121111 00 12222355778889999
Q ss_pred hhhHHHHHHHH
Q 000589 1321 QALPPLTQLLN 1331 (1403)
Q Consensus 1321 eA~~~l~qaL~ 1331 (1403)
+|+..|++++.
T Consensus 729 ~A~~~y~~Al~ 739 (1157)
T PRK11447 729 QALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-13 Score=176.34 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII-------- 1069 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i-------- 1069 (1403)
+..++..|..++.+|++++|+..+.+++.. +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 93 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVL 93 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhH
Confidence 344555566666666666666666665554 3334455555666666666666666665555432
Q ss_pred -------------------HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1070 -------------------NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1070 -------------------~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+......+.+.....+..+|.++...|++++|+..|++++.. +|....++..+
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 165 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGL 165 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHH
Confidence 111111234566677788888888888888888888888764 23345567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS 1210 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a 1210 (1403)
|.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++.+ .+.+ ..+
T Consensus 166 a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~---~~~ 229 (899)
T TIGR02917 166 AQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNN---PAV 229 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHH
Confidence 888888888888888888887642 334456777888888888888888888888764 2333 334
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1211 QNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1211 ~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+..++.++ ...|++++|...+. ++++..+.++........+. ..|++++|+..|+++++
T Consensus 230 ~~~~~~~~------~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 230 LLALATIL------IEAGEFEEAEKHAD--ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHH------HHcCCHHHHHHHHH--HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555 66788888887777 54444444333222222222 66788888888887776
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-13 Score=178.64 Aligned_cols=282 Identities=19% Similarity=0.180 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...++.++..+...|++++|+.++++++.. .|....++..+|.+|...|++++|+.+|++++..
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 630 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-------- 630 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 344556677777777777777777766554 2223445667777777777777777777777654
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|++++|+.+++.+....
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 699 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--- 699 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 2333455666777777777777777777776653 23333445556666666666666666655544321
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+.....+..+|.++...|++++|+.+|++++... ++. .....++.++ ...|++++|+..+
T Consensus 700 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~------~~~g~~~~A~~~~ 759 (899)
T TIGR02917 700 -----PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIKLHRAL------LASGNTAEAVKTL 759 (899)
T ss_pred -----cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHHHHHHH------HHCCCHHHHHHHH
Confidence 2233345556666666666666666666655431 111 2233344444 4555555555555
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccch-------------HHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGF-------------DERAARAAA 1300 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~-------------~era~~a~~ 1300 (1403)
. + .+..+|....++..++ ..|++++|..+|+++++.. +.++..... .+...++..
T Consensus 760 ~--~---~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 831 (899)
T TIGR02917 760 E--A---WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---PDNAVVLNNLAWLYLELKDPRALEYAEKALK 831 (899)
T ss_pred H--H---HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 5 2 2222333333333333 4455555555555555411 111110000 000000000
Q ss_pred ---HHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1301 ---EVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1301 ---e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
.........|.++...|++++|+..|+++++...
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0011222346677888999999999999998643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-13 Score=170.02 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=207.4
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 991 SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 991 ~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
..|.+ ...++.+|..++..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 71 ~~p~~--~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l- 139 (656)
T PRK15174 71 TAKNG--RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA- 139 (656)
T ss_pred hCCCc--hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34444 556777889999999999999999999988 5666778999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.|....++..+|.++...|++++|+..+++++... ++++ ..+..++ .+...|++++|+..++++
T Consensus 140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRG---DMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 36667788999999999999999999999877542 3333 3344443 478899999999999988
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQK 1230 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~ 1230 (1403)
+.... .........++.++...|++++|+..+++++.+ +|....++..++.++ ..+|++
T Consensus 204 l~~~~-------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l------~~~G~~ 262 (656)
T PRK15174 204 LPFFA-------LERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAY------YQSGRS 262 (656)
T ss_pred HhcCC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH------HHcCCc
Confidence 76421 111223456788999999999999999999875 234456677888887 788998
Q ss_pred HH----HHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH
Q 000589 1231 GQ----AFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV 1302 (1403)
Q Consensus 1231 ~e----Ai~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~ 1302 (1403)
++ |+..++ +++++ .|+...++..+| .+|++++|+.++++++... +.++.
T Consensus 263 ~eA~~~A~~~~~--~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~--------------- 319 (656)
T PRK15174 263 REAKLQAAEHWR--HALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPY--------------- 319 (656)
T ss_pred hhhHHHHHHHHH--HHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH---------------
Confidence 86 777777 55554 455556666666 8899999999999999742 22222
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
.....|.++...|++++|+..|++++..
T Consensus 320 --a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 320 --VRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1223455778889999999999998875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=165.78 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCCHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSIL--------------------------QQVTGPMHREVANCCRYLAMVLY 1051 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~--------------------------~~i~g~~~p~~a~a~~~LA~iy~ 1051 (1403)
...+..+|+.|+.+++|++|..+|+.+-.+. -+.+-..+|....++..+|.+|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 3788889999999999999999998764431 01111223445567888999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
.+++++.|+..+++|+.+ +|..+.+|..+|.=+....+++.|..+|+.|+.+ +|....+|+-||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 999999999999999998 5778889999999999999999999999999965 467788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQ 1211 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~ 1211 (1403)
.+|.++++++.|+-+|++|+++. |....+...+|.+|.++|+.++|+.+|++|+.+ ++...-..
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~ 560 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCK 560 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhH
Confidence 99999999999999999999976 666778889999999999999999999999875 22223334
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcC
Q 000589 1212 NWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLG 1282 (1403)
Q Consensus 1212 ~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G 1282 (1403)
+..+.++ ...+++.+|+..++ ++-.--|+...++..+| +.|+...|+..|-=|++...-|
T Consensus 561 ~~~~~il------~~~~~~~eal~~LE-----eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASIL------FSLGRYVEALQELE-----ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHH------HhhcchHHHHHHHH-----HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4555555 88999999998888 55556688888888888 7899999999998888754433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=143.61 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....+..++.+|..+...|++++|+..+.+++.. +|....++..+|.+|..+|++++|+.++++++...
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3455788999999999999999999999999876 45567889999999999999999999999999862
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
|.....+.++|.++...|++++|+.++++++.. ..++.....+.++|.++...|++++|+.+|.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344568899999999999999999999999863 223445667889999999999999999999999986
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +.....+..+|.++...|++++|+.++++++.+ .+.++.. +..++.++ ...|+.++|
T Consensus 165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~---~~~~~~~~------~~~~~~~~a 222 (234)
T TIGR02521 165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT-----YNQTAES---LWLGIRIA------RALGDVAAA 222 (234)
T ss_pred C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHH------HHHhhHHHH
Confidence 4 233457889999999999999999999999876 2333333 33444454 678888888
Q ss_pred HHHHH
Q 000589 1234 FNAAS 1238 (1403)
Q Consensus 1234 i~~l~ 1238 (1403)
..+.+
T Consensus 223 ~~~~~ 227 (234)
T TIGR02521 223 QRYGA 227 (234)
T ss_pred HHHHH
Confidence 87665
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=162.49 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----
Q 000589 999 KNLVEMGKVQLA--EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE----- 1071 (1403)
Q Consensus 999 ~~l~~lG~~~~~--~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e----- 1071 (1403)
..+..+|..|.. +-+..+|+..|.+ + ...++.+.+++..+|..|+.+++|++|..+|+.+-++..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 334444544433 3345566666666 2 233677789999999999999999999999998655320
Q ss_pred ---------------------HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1072 ---------------------RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1072 ---------------------r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+.+-...+....+|..+|.||.-+++++.|+++|+||+.+ +|..+.+|..+
T Consensus 390 meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLl 461 (638)
T KOG1126|consen 390 MEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLL 461 (638)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhc
Confidence 1111223445567889999999999999999999999976 57789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS 1210 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a 1210 (1403)
|.=+....+||.|..+|+.||.+. +..-.+|+.||.+|.++++++.|+-+|++|++| +|.....
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi 525 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVI 525 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhH
Confidence 999999999999999999999865 455678999999999999999999999999987 6777777
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCcccc
Q 000589 1211 QNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGR 1289 (1403)
Q Consensus 1211 ~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~ 1289 (1403)
+..++.++ .+.|+.++|+.+++ +|+.+...+|....-...+- ..++|.+|+..+++.-+.. |.-.
T Consensus 526 ~~~~g~~~------~~~k~~d~AL~~~~--~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v------P~es 591 (638)
T KOG1126|consen 526 LCHIGRIQ------HQLKRKDKALQLYE--KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV------PQES 591 (638)
T ss_pred HhhhhHHH------HHhhhhhHHHHHHH--HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC------cchH
Confidence 78888887 89999999999999 77666655543322222222 6799999999888865522 1111
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1290 GFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1290 ~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
......|..|.+.|+...|+..|.=|+++-..
T Consensus 592 --------------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 592 --------------SVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred --------------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 13344577888889999999999988887554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=171.41 Aligned_cols=227 Identities=14% Similarity=0.009 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++.+|.++.. +++.+|+..|.+++... |.. .....+|.++...|++++|+..|++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 68889999999987 89999999999998772 322 23666788888999999999999997543 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+. ...+.++|.++...|++++|+.+|++++.+ +|.....+..++..+...|++++|+.+|++++++.
T Consensus 540 --p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 --MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 11 234678899999999999999999999864 23344555667777778899999999999999864
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|. ...+.++|.++...|++++|+.++++++.+ +|....++.+++.++ ...|++++|+..
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL------~~~G~~eeAi~~ 665 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYAL------WDSGDIAQSREM 665 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHH
Confidence 33 568899999999999999999999999986 344456788898887 889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
+. +++++ +|+...++.++| ..|++++|+.+|++++..
T Consensus 666 l~--~AL~l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LE--RAHKG---LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HH--HHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99 66555 455556667776 889999999999999983
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=157.90 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=221.8
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.....+..++.+|.+|+.|..+|+|++|..+|.+++... +++ ..-.+..||++|...|+++.|+.+|++.+..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 334556778999999999999999999999999998872 222 3567889999999999999999999999887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLN----QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G----~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
. |....++..||.+|...+ ..+.|..++.+++.. .|....+|..+|.+|....-+. ++.
T Consensus 372 ~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 372 L--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred C--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHH
Confidence 4 555666777888887775 557777777777754 3677889999999886655554 499
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHH
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS--RTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~--~t~~a~~~La~l~~r~~~ 1223 (1403)
+|..|+.+.....+. .-...++++|..++.+|++.+|..++..|+..+......+.. ......++|+.++
T Consensus 435 ~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~----- 506 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL----- 506 (1018)
T ss_pred HHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH-----
Confidence 999999988776544 335678999999999999999999999999986544333221 2234567777777
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAA 1299 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~ 1299 (1403)
...+++..|..+|. .|+..||..+.++..|+ ..++..+|..+++.+++.. ..+|..+.
T Consensus 507 -E~l~~~~~A~e~Yk-----~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d---~~np~ars--------- 568 (1018)
T KOG2002|consen 507 -EELHDTEVAEEMYK-----SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID---SSNPNARS--------- 568 (1018)
T ss_pred -HhhhhhhHHHHHHH-----HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc---cCCcHHHH---------
Confidence 88999999999999 99999999999999997 5689999999999999732 34454444
Q ss_pred HHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1300 AEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1300 ~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
-.|.++.....+..|...|+.++.-..
T Consensus 569 --------l~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 569 --------LLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred --------HHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 225455555566666666666655444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-12 Score=143.92 Aligned_cols=209 Identities=12% Similarity=0.155 Sum_probs=173.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
|..+|.+|..+.+-++....|.+|..+ +|+....|+..|++++-+++|++|+.-|++|+.+ .|+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe 426 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPE 426 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Chh
Confidence 788999999999999999999999998 6667778999999999999999999999999998 588
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.+.+|..++.+.++++++++++..|+.+..-+ |.....|+..|.++..+++|+.|++.|..|+++-....+-
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999998653 6677789999999999999999999999999986542211
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
.--....+.-.+..+ .-.+++..|++++++|+++ +|..-.++..|+++. .++++.++|+++++
T Consensus 499 ~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~------lQ~~~i~eAielFE-- 561 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFE------LQRGKIDEAIELFE-- 561 (606)
T ss_pred cccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHH------HHHhhHHHHHHHHH--
Confidence 100111112222222 2348999999999999986 788888999999887 89999999999999
Q ss_pred HHHHHHhhCh
Q 000589 1241 KAIDILKAHP 1250 (1403)
Q Consensus 1241 kALei~~~~p 1250 (1403)
+++.+.+.-.
T Consensus 562 ksa~lArt~~ 571 (606)
T KOG0547|consen 562 KSAQLARTES 571 (606)
T ss_pred HHHHHHHhHH
Confidence 7776665433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=140.81 Aligned_cols=227 Identities=16% Similarity=0.156 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1000 NLVEMGKVQLAEG--LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G--~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..++..+++.+| ++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|++|+.-
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-------- 519 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-------- 519 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------
Confidence 3345555555544 688999999999887 3445678889999999999999999999999864
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
......+++|+|..+..+|++++|+.+|.+...++. ..+..++.+|.+|..+.+..+|+++|.++..+.
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sli--- 588 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSLI--- 588 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---
Confidence 345678999999999999999999999999887763 357789999999999999999999999988765
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
|....++..||.+|-+.|+-..|.+++-..+..| |-..+...||+.+| ....-+++|+.++
T Consensus 589 -----p~dp~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayy------idtqf~ekai~y~ 649 (840)
T KOG2003|consen 589 -----PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYY------IDTQFSEKAINYF 649 (840)
T ss_pred -----CCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4445678899999999999999999988777653 44566778999888 6677788899998
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+ +|.-+ .|....-...++ +.|+|++|...|+...+
T Consensus 650 e--kaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 650 E--KAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred H--HHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8 54333 333332222223 88999999999988765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=160.64 Aligned_cols=247 Identities=13% Similarity=0.021 Sum_probs=186.2
Q ss_pred CCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---------CCHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAE---GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---------GDMAGA 1059 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~---G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---------G~~~eA 1059 (1403)
.+...++..++..|..++.. +.+++|+.+|++|+++ +|..+.++..||.+|..+ +++++|
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A 323 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKA 323 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHH
Confidence 34455666777778766544 3478999999999987 567778888899887643 348999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC
Q 000589 1060 IMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK 1139 (1403)
Q Consensus 1060 i~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~ 1139 (1403)
+..+++|+.+ .|....++..+|.++...|++++|+.+|++|+.+ .|..+.+++++|.++...|+
T Consensus 324 ~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 324 KEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCC
Confidence 9999999987 4666778999999999999999999999999986 35566779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
+++|+.+|++++++. +. ....+..++.++...|++++|+.++++++... .+....++.+++.++
T Consensus 388 ~~eAi~~~~~Al~l~-----P~---~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l- 451 (553)
T PRK12370 388 LEEALQTINECLKLD-----PT---RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFL- 451 (553)
T ss_pred HHHHHHHHHHHHhcC-----CC---ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHH-
Confidence 999999999999875 22 22334456667778999999999999887531 233445667788887
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHHHHHHHHHhhcCCCCccc
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGASANNSLNAALLGETLPRG 1288 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~~ekAL~~~~~G~~~p~~ 1288 (1403)
..+|++++|...+. ++....|....+...++ ..+.-++|...+++.++....+..++..
T Consensus 452 -----~~~G~~~eA~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 452 -----SLKGKHELARKLTK-----EISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred -----HhCCCHHHHHHHHH-----HhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchH
Confidence 78999999999887 55666666555555555 2222358888888877744444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=141.42 Aligned_cols=196 Identities=14% Similarity=0.198 Sum_probs=176.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
+|..|...++.+.|+.+|++|+.+ +|....++..+|.-|..+.+...|++.|++|+++ .|..-.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyR 399 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYR 399 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHH
Confidence 588999999999999999999998 7889999999999999999999999999999998 467778
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+++.||..|..++-+.=|+-||++|+.+ .|.....|..||.||..+++.++|+.+|.+|+....
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------- 463 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------- 463 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------
Confidence 9999999999999999999999999976 355667799999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....++..||.+|..+++..+|..+|++.++.. ..-|...+.+..+..+|+..+ ...+++++|..+..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f------~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYF------KKMKDFDEASYYAT 531 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHH------HhhcchHHHHHHHH
Confidence 245689999999999999999999999999876 455777888999999999888 88899999887665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=150.86 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.|.++...|..++..|++-.|...|..++.+ +|.....|..+|.+|....+.++-..+|.+|..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------- 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------- 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------
Confidence 4788889999999999999999999999998 4444555999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+|+....|+..|.+++-+++|++|+.-|++++.+ +|..+..+..++..++++++++++...|+++.+.+
T Consensus 390 -dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-- 458 (606)
T KOG0547|consen 390 -DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-- 458 (606)
T ss_pred -CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 4677778999999999999999999999999976 58889999999999999999999999999999866
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK--DSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~--~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
|....+|...|.++..+++|+.|+++|.+|+.+-... |.-.. ..+..-+.+. .+..+++.+|+
T Consensus 459 ------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~----~~~~v~~~plV~Ka~l~-----~qwk~d~~~a~ 523 (606)
T KOG0547|consen 459 ------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE----HLIIVNAAPLVHKALLV-----LQWKEDINQAE 523 (606)
T ss_pred ------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc----ccccccchhhhhhhHhh-----hchhhhHHHHH
Confidence 6677889999999999999999999999999875431 11111 1111112211 13558999999
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1235 NAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1235 ~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
.+++ +|+++ .|..-.++..|| ++|+.++|+++|++++.+
T Consensus 524 ~Ll~--KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 524 NLLR--KAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHH--HHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999 55554 566667777777 899999999999999883
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-12 Score=134.92 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+.....+|.-|+.+|++..|...+++||+. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345778899999999999999999999999998 7888999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|....+++|.|.+++.+|+|++|..+|++|+.. +..+..+.++-|+|.|..+.|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 5788899999999999999999999999999963 6667788899999999999999999999999999975
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
++.......++...+..|+|..|..+++.-..- .+ .+++++.....+- ...|+-+.|-
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~----~~----~~A~sL~L~iria------k~~gd~~~a~ 227 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQQR----GG----AQAESLLLGIRIA------KRLGDRAAAQ 227 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc----cc----ccHHHHHHHHHHH------HHhccHHHHH
Confidence 445566778999999999999999988765432 11 2333332222232 5667766665
Q ss_pred HHHH
Q 000589 1235 NAAS 1238 (1403)
Q Consensus 1235 ~~l~ 1238 (1403)
.+-.
T Consensus 228 ~Y~~ 231 (250)
T COG3063 228 RYQA 231 (250)
T ss_pred HHHH
Confidence 5444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=136.36 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
....+..+..+|.+|...|++++|+..+++++.. +|....++..+|.++...|++++|+.++++++.+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3456788999999999999999999999999876 35567788999999999999999999999999752
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
|.....+.++|.++...|++++|+.+|++++... ..+.....+..+|.+|...|++++|..++.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334578999999999999999999999998742 22344567888999999999999999999999875
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
. +++ ..++..++.++ ...|++++|...++ +++......+........+. ..|+.++|..+.+.
T Consensus 165 ~-----~~~---~~~~~~la~~~------~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 165 D-----PQR---PESLLELAELY------YLRGQYKDARAYLE--RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred C-----cCC---hHHHHHHHHHH------HHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 223 34566777777 88999999999998 77776444444444333333 77889998887766
Q ss_pred HH
Q 000589 1275 SL 1276 (1403)
Q Consensus 1275 AL 1276 (1403)
+.
T Consensus 229 ~~ 230 (234)
T TIGR02521 229 LQ 230 (234)
T ss_pred HH
Confidence 54
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=163.53 Aligned_cols=225 Identities=13% Similarity=-0.003 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+.+|..+...|++++|+..|++++.. .+. ...+..+|.++...|++++|+.+|++++.. +|
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P 573 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH-----DMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GL 573 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 3666788888999999999999987543 111 124678899999999999999999999875 24
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
.....+..++..+...|++++|+.+|++++.+ .|. ...+.++|.++..+|++++|+.+|++++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----- 639 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE----- 639 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 44555666777777889999999999999976 244 6779999999999999999999999999874
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
|....++.++|.++...|++++|+.++++++++ +|....++.+++.++ ..+|++++|+..++
T Consensus 640 ---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al------~~lGd~~eA~~~l~- 701 (987)
T PRK09782 640 ---PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVN------QRLDDMAATQHYAR- 701 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH-
Confidence 556678999999999999999999999999986 344456788999888 89999999999999
Q ss_pred HHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+++++. |+.+......+ ...+++.|.+.|.++..
T Consensus 702 -~Al~l~---P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 -LVIDDI---DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred -HHHhcC---CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 665555 44444444443 56667777777777776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=138.77 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=205.8
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC--CHHHHHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG--DMAGAIMQQ 1063 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G--~~~eAi~~~ 1063 (1403)
..+|.+..-......-.+.+-.++.+|+++.|++.+.- ++. .++.....+-++|..+++.+| ++..|..|.
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 34444443333333345567788999999999987643 222 334455566788888888854 788999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
..|+.+ ....+.++.|-|.+.+..|++++|.+.|++|+. ++.....+++|+|..+..+|++++|
T Consensus 480 d~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldea 543 (840)
T KOG2003|consen 480 DIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEA 543 (840)
T ss_pred HHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHH
Confidence 998876 234567888999999999999999999999984 3566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
+.+|.+.-.+. ...+.++..+|.+|..+.+...|++++-++..+ -+++|.+ +..|+.+|
T Consensus 544 ld~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~i---lskl~dly----- 602 (840)
T KOG2003|consen 544 LDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAI---LSKLADLY----- 602 (840)
T ss_pred HHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHH---HHHHHHHh-----
Confidence 99999887776 456788999999999999999999999988764 3566654 56788888
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAA 1299 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~ 1299 (1403)
...|+..+|.+++. +.++..|....+...|+ ...-.++|+.+|++|--.. |...
T Consensus 603 -dqegdksqafq~~y-----dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq------p~~~---------- 660 (840)
T KOG2003|consen 603 -DQEGDKSQAFQCHY-----DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ------PNQS---------- 660 (840)
T ss_pred -hcccchhhhhhhhh-----hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------ccHH----------
Confidence 88999999999888 66666676666666666 5566788999999875311 1111
Q ss_pred HHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1300 AEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1300 ~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
+.++..+.++++.|.|+.|...|++.-.-
T Consensus 661 ----kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 ----KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 23333344666667777776666655433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-11 Score=155.34 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..+..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----- 112 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----- 112 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 444677888999999999999999999999987 3444556778999999999999999999999887
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
.|.... +..+|.++...|++++|+..+++++.+ +|....++..+|.++...+..++|+..++
T Consensus 113 ---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 113 ---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred ---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 355555 888999999999999999999999976 34445556678888888888887776555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=152.30 Aligned_cols=320 Identities=15% Similarity=0.066 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+.....+|.++...|++++|..++.+++.... .........++..+|.++...|++++|..++++++...+.. |.
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~ 526 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV 526 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc
Confidence 445555688999999999999999999987521 12222345677889999999999999999999999987754 32
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
......++.++|.+++..|++++|..++++++.+.....+...+....++..+|.++...|++++|..++.+++.+...
T Consensus 527 -~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 527 -YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 2344567889999999999999999999999999877654444555666778999999999999999999999998764
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.. ......++..+|.++...|++++|..++.++..+.... + .+.........+.. ......|+.+.|...
T Consensus 606 ~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~-----~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 606 YQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRL-----IYWQMTGDKEAAANW 675 (903)
T ss_pred cC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHH-----HHHHHCCCHHHHHHH
Confidence 32 22345677889999999999999999999998876542 1 11111111111111 112457888888777
Q ss_pred HHHHHHHHHHhhChH-HHHHHHHHH----HhCChHHHHHHHHHHHHHh-hcCCCCccccchHHHHHHHHHHHHHHHHHhh
Q 000589 1237 ASTQKAIDILKAHPD-LIHAFQAVA----AAGGSGNSGASANNSLNAA-LLGETLPRGRGFDERAARAAAEVRKKAVAKG 1310 (1403)
Q Consensus 1237 l~~qkALei~~~~p~-~~~a~~~La----~~G~~~eA~~~~ekAL~~~-~~G~~~p~~~~~~era~~a~~e~r~l~~a~G 1310 (1403)
+. +........+. ....+..++ .+|++++|..++++++... ..|... . . -......|
T Consensus 676 l~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~----~---~--------a~~~~~la 738 (903)
T PRK04841 676 LR--QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS----D---L--------NRNLILLN 738 (903)
T ss_pred HH--hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH----H---H--------HHHHHHHH
Confidence 65 22111111111 111122333 7899999999999999832 222110 0 0 01233456
Q ss_pred HHHhhCCCchhhhHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000589 1311 LLIRPHGLPAQALPPLTQLLNIINSSGATPDASVSGAT 1348 (1403)
Q Consensus 1311 ~~~~~~g~~~eA~~~l~qaL~i~~s~g~~~~~~~~~~a 1348 (1403)
..+..+|+.++|...+++++++....|...++.+.++.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la~~~g~~r~f~~~g~~ 776 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEA 776 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCccchhhhHHhccHH
Confidence 78899999999999999999999988887777655554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=134.52 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+..-+|+.|...++.++|+.||++|+.+ +|....++..+|.=|..+.+...|+..|++|+++ .
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~ 394 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N 394 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence 34455677888889999999999999998 5788899999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
|..-.+|+.||.+|.-++-.-=|+-+|++|+.+. |.....+..||.+|...++.++|+.+|+.|+..-
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---- 462 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---- 462 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----
Confidence 7778899999999999999999999999999865 5667789999999999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHH
Q 000589 1201 GEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASA 1272 (1403)
Q Consensus 1201 g~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ 1272 (1403)
+ .-..++..||.+| ...++..+|..++. +.++... ..+.+..+..-|+ ..+++++|..+.
T Consensus 463 -d---te~~~l~~LakLy------e~l~d~~eAa~~ye--k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 -D---TEGSALVRLAKLY------EELKDLNEAAQYYE--KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -c---cchHHHHHHHHHH------HHHHhHHHHHHHHH--HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 1 1356788999999 88999999999998 7776542 4666777777788 789999999888
Q ss_pred HHHHH
Q 000589 1273 NNSLN 1277 (1403)
Q Consensus 1273 ekAL~ 1277 (1403)
.+++.
T Consensus 531 ~~~~~ 535 (559)
T KOG1155|consen 531 TLVLK 535 (559)
T ss_pred HHHhc
Confidence 88765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-11 Score=126.90 Aligned_cols=201 Identities=17% Similarity=0.135 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+...+.++..||.-|+..|++..|...+++||++ +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 4466788999999999999999999999999998 5788889999999999999999999999999976
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+|....+++|.|..++.+|++++|..+|++|+.. +..+..+.++.|+|.|..++|+++.|..++++++++
T Consensus 99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 5778889999999999999999999999999873 444566778999999999999999999999999986
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
+|....+...++... ...|++..|..++. +...-..........-..++ ..|+-..|..+-.+
T Consensus 169 --------dp~~~~~~l~~a~~~------~~~~~y~~Ar~~~~--~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 169 --------DPQFPPALLELARLH------YKAGDYAPARLYLE--RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred --------CcCCChHHHHHHHHH------HhcccchHHHHHHH--HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 233333445555555 77899999988777 21111122223333344444 56776665554433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=148.14 Aligned_cols=230 Identities=13% Similarity=0.042 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAE---------GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELI 1068 (1403)
Q Consensus 998 A~~l~~lG~~~~~~---------G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~ 1068 (1403)
+..+..+|.++... +++++|+..+++|+++ +|....++..+|.++...|++++|+.+|++|+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666665533 4589999999999988 566678899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1069 INERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1069 i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
+ .|....+++++|.++..+|++++|+.++++++.+. +.++ ..++.++.++...|++++|+.+++
T Consensus 367 l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 L--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred h--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHH
Confidence 8 46667789999999999999999999999999862 3333 334556667788999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 000589 1149 EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQK 1228 (1403)
Q Consensus 1149 kAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg 1228 (1403)
+++... .+.....+..+|.+|...|++++|..++++.... .+....+...|+..| ...|
T Consensus 431 ~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~------~~~g 489 (553)
T PRK12370 431 ELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEY------CQNS 489 (553)
T ss_pred HHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHH------hccH
Confidence 988642 2344557889999999999999999998875432 344445556666665 4444
Q ss_pred cHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1229 QKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1229 ~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+.|...++ +.++.....+........+. -.|+-+.|..+ +++.+
T Consensus 490 --~~a~~~l~--~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 --ERALPTIR--EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred --HHHHHHHH--HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 36666565 33333332222111122221 45666666655 55444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=143.40 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
+..+..|+.+|..|+..|++.+|..+|.+|-.+ ++..+.++...|..|...|+.++|+..|..|-+++.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~--- 377 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP--- 377 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---
Confidence 344778999999999999999999999999887 678889999999999999999999999999988863
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
|- -..+.-+|.-|...+++..|.++|.+|+.+. |...-.+..+|.+....+.|.+|..+|+.++...
T Consensus 378 G~-----hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 378 GC-----HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred CC-----cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 22 2235568999999999999999999999874 3344458999999999999999999999999766
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
+... ++.+.....+.+||.+|..++.+++|+.++++++.+ .+....++..+|.+| ..+|+++.|+
T Consensus 445 k~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy------~llgnld~Ai 509 (611)
T KOG1173|consen 445 KSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIY------HLLGNLDKAI 509 (611)
T ss_pred hhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHH------HHhcChHHHH
Confidence 5543 344456677899999999999999999999999986 345567778888888 8899999999
Q ss_pred HHHHHHHHHHHHhh
Q 000589 1235 NAASTQKAIDILKA 1248 (1403)
Q Consensus 1235 ~~l~~qkALei~~~ 1248 (1403)
+.+. +||-+-+.
T Consensus 510 d~fh--KaL~l~p~ 521 (611)
T KOG1173|consen 510 DHFH--KALALKPD 521 (611)
T ss_pred HHHH--HHHhcCCc
Confidence 9999 76665443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-10 Score=146.65 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.......+....|++++|+..+.++... .+..+.++..+|.++...|++++|+.++++++.+ .|
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P 80 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EP 80 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3444567788899999999999888764 3556778999999999999999999999999987 24
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..+|.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++.
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----- 146 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----- 146 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 55667789999999999999999999999975 344455 8899999999999999999999999965
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------------------------HHHHHHh
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY---------------------------------------DILVKQL 1200 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl---------------------------------------~i~~~~l 1200 (1403)
|....++..+|.++...+..++|+..++++. ..++..+
T Consensus 147 ---P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 ---PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred ---CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 4455666778889988888888887666322 1111111
Q ss_pred C--CCC----HHHHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHH
Q 000589 1201 G--EED----SRTKDSQNW-MKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGAS 1271 (1403)
Q Consensus 1201 g--~~~----~~t~~a~~~-La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~ 1271 (1403)
. +.+ +....+... ++. ...++++++|+..++ +++......|.....+...+ .+|++++|+.+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~-------Ll~~g~~~eA~~~~~--~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGA-------LLARDRYKDVISEYQ--RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHH-------HHHhhhHHHHHHHHH--HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 011 111111111 111 246688999999988 44333222355444333222 78999999999
Q ss_pred HHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHH
Q 000589 1272 ANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1272 ~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
|++++... +..+.... ......+..+..+|++++|+..+++++...
T Consensus 295 l~~~l~~~---p~~~~~~~-------------~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 295 LTELFYHP---ETIADLSD-------------EELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHHHhhcC---CCCCCCCh-------------HHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99988621 11111111 011122224477799999999999888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=134.62 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..++.+|.+|...|++++|+..|.+++++ +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----- 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----- 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345788999999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|....++.++|.+++..|++++|+..+++++.+ .++++.. ..+ ..++...+++++|+..|.+++...
T Consensus 128 ---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 128 ---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhC
Confidence 4666778999999999999999999999999975 2444521 111 223456788999999998766422
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
.+.. + ..+.++...|++..+ ..++.+.+.+.... ...+...+++.+||.++ ..+|++++|+
T Consensus 196 -------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~------~~~g~~~~A~ 256 (296)
T PRK11189 196 -------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYY------LSLGDLDEAA 256 (296)
T ss_pred -------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHH------HHCCCHHHHH
Confidence 1111 1 134555566776544 23333332211000 01234567888888888 8999999999
Q ss_pred HHHHHHHHHHHH
Q 000589 1235 NAASTQKAIDIL 1246 (1403)
Q Consensus 1235 ~~l~~qkALei~ 1246 (1403)
.+++ ++++.-
T Consensus 257 ~~~~--~Al~~~ 266 (296)
T PRK11189 257 ALFK--LALANN 266 (296)
T ss_pred HHHH--HHHHhC
Confidence 9998 665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=135.72 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=189.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
..+|++|+..|.+.+|...++.++.-. .....+..|+.+|....+...|+..+.+.++.+ |..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--------P~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--------PFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--------Cch
Confidence 358999999999999999999998863 234568889999999999999999999988764 777
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+..+|.++..++++++|+++|++++.+ ||....+..-+|.-|+.-++.+-|+.+|++.|.+- .
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~- 355 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----A- 355 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----C-
Confidence 788889999999999999999999999865 56666667778888999999999999999998763 3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
.....+.|+|.+++..++++-++..+++|+.... +.....+.+++|+.+. ...|++.-|..+++
T Consensus 356 --~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~va------V~iGD~nlA~rcfr--- 419 (478)
T KOG1129|consen 356 --QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVA------VTIGDFNLAKRCFR--- 419 (478)
T ss_pred --CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeE------EeccchHHHHHHHH---
Confidence 3345788999999999999999999999988653 3446677888888776 77899999988887
Q ss_pred HHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1242 AIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1242 ALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
-.+..+++...++.+|| +.|+..+|..+++.|-.
T Consensus 420 --laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 420 --LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred --HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 44556778888888888 78999999999988765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-10 Score=137.48 Aligned_cols=278 Identities=16% Similarity=0.076 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..+..++..++..|+|..+..+..-|+.... ..+..+..++.+|.+|..+|+|++|..||.+++... .+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d 339 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND 339 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC
Confidence 34566689999999999999999999988742 356788999999999999999999999999998762 22
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG----KMDTALRYLQEALKK 1153 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g----~~deAl~~lekAL~l 1153 (1403)
.....+..||..|...|+++.|..+|++++... |+...++.-||.+|...+ ..+.|..++.++++.
T Consensus 340 --~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 340 --NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred --CccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 246678899999999999999999999998753 566677888999998886 567777777777765
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +....+|..||.+|... +...++.+|..|+.++...... --.+.++++|.++ ...|++..|
T Consensus 410 ~--------~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslh------f~~g~~~~A 471 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLH------FRLGNIEKA 471 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHH------HHhcChHHH
Confidence 4 56778899999998765 4555599999999998876544 3356789999998 889999999
Q ss_pred HHHHHHHHHHHHHh--hChH-----HHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH
Q 000589 1234 FNAASTQKAIDILK--AHPD-----LIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV 1302 (1403)
Q Consensus 1234 i~~l~~qkALei~~--~~p~-----~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~ 1302 (1403)
...+. +|+..+. .+++ .....+++| ..+++..|...|...+. .||....
T Consensus 472 ~~~f~--~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk------ehp~YId------------ 531 (1018)
T KOG2002|consen 472 LEHFK--SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK------EHPGYID------------ 531 (1018)
T ss_pred HHHHH--HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH------HCchhHH------------
Confidence 99998 7777743 2222 245677887 67899999999999987 2343332
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
-.+-.|+..+..+...+|...+.+++++.++
T Consensus 532 --~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 532 --AYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred --HHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 1111233455668888999999999988776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=135.17 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+..+.++..+.+++... ..+.+..+..++.+|.+|...|++++|+..|++++.+ .|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASR----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 35677778887777542 1234566889999999999999999999999999987 46667899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
+...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 35566789999999999999999999999999864 333321 111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----
Q 000589 1172 LAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---- 1247 (1403)
Q Consensus 1172 LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---- 1247 (1403)
..++...+++++|+..+++++... .++... .+..+ ...|+...+. .+. .+.+.+.
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~-------~~~~~------~~lg~~~~~~-~~~--~~~~~~~~~~~ 230 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL----DKEQWG-------WNIVE------FYLGKISEET-LME--RLKAGATDNTE 230 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC----CccccH-------HHHHH------HHccCCCHHH-HHH--HHHhcCCCcHH
Confidence 223456789999999998765321 111111 11111 2344443331 222 2222222
Q ss_pred hChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1248 AHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1248 ~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
..|....++.++| ..|++++|+.+|++|+..
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2345667888888 889999999999999973
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=135.43 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....+..++++|....+...|+..|.+.++. .|.....+..+|.++..++++++|.++|+.+++.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~------- 319 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL------- 319 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-------
Confidence 3567788999999999999999999999887 4566677888999999999999999999999886
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
|+..+.+...+|.-|+..++++-|+.||++.+.+ |-..|. .++|+|.|+...++++-++..|++|+....
T Consensus 320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat- 389 (478)
T KOG1129|consen 320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT- 389 (478)
T ss_pred -CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-
Confidence 5666777778899999999999999999999976 555555 489999999999999999999999998763
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+....+.+|+|||.+....||+..|...|+-|+. .+++..+++++|+.+. ...|+.++|..+
T Consensus 390 ----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~------~r~G~i~~Arsl 451 (478)
T KOG1129|consen 390 ----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLA------ARSGDILGARSL 451 (478)
T ss_pred ----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHH------hhcCchHHHHHH
Confidence 2346788999999999999999999999998875 4677789999999987 788999999998
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+. ..-...|+......+++
T Consensus 452 l~-----~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 452 LN-----AAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HH-----HhhhhCcccccccccee
Confidence 88 33334566665555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=141.22 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
+.+|.+++..|++++|++.+.+.+.... .+.....+..+|.+...++++++|+..|++.+... +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc--------ccc
Confidence 3569999999999999999977655421 23444677789999999999999999999998762 334
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+.+++.+ ...+++++|+.+++++.+.. .++ ..+..+..++...++++++...++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 5567777777 78999999999998876531 122 335556778899999999999999977422 2
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
.+.....+..+|.++...|++++|+..+++++++ .|+++... ..++.++ ...|+++++...+. .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~---~~l~~~l------i~~~~~~~~~~~l~--~ 205 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDAR---NALAWLL------IDMGDYDEAREALK--R 205 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHH---HHHHHHH------CTTCHHHHHHHHHH--H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH---HHHHHHH------HHCCChHHHHHHHH--H
Confidence 2456678899999999999999999999999986 24555544 4455555 67888888777776 4
Q ss_pred HHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCch
Q 000589 1242 AIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPA 1320 (1403)
Q Consensus 1242 ALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~ 1320 (1403)
.....+.+|.....+.... ..|++++|+.+|++++... +.+|. .....+.++...|+.+
T Consensus 206 ~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d~~-----------------~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 206 LLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---PDDPL-----------------WLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-HH-----------------HHHHHHHHHT------
T ss_pred HHHHCcCHHHHHHHHHHHhcccccccccccccccccccc---ccccc-----------------cccccccccccccccc
Confidence 4344455565544444333 7799999999999998732 23332 3334566778889999
Q ss_pred hhhHHHHHHHHHHh
Q 000589 1321 QALPPLTQLLNIIN 1334 (1403)
Q Consensus 1321 eA~~~l~qaL~i~~ 1334 (1403)
+|..++++++..+.
T Consensus 266 ~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 266 EALRLRRQALRLLR 279 (280)
T ss_dssp --------------
T ss_pred cccccccccccccC
Confidence 99999999987653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=136.02 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+|..+..++.+|..|+..|++.+|..|+-||..+ ++....+|..+|..+...|..++|+..|..|-.+...
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G- 378 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG- 378 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence 6777788999999999999999999999999887 4677889999999999999999999999999887633
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
-.-| +..+|.-|...+++.-|.++|.+|+.++ |.....++.+|.+.+..+.|.+|..+|+.++..
T Consensus 379 --~hlP-----~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 379 --CHLP-----SLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred --Ccch-----HHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 2233 5678999999999999999999999987 556678999999999999999999999999966
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
.+..+ ...+...-...+||.++ ..++.+++|+..++ ++|..-+..+....+...+- .+|+++.|+.+|.+
T Consensus 444 ik~~~-~e~~~w~p~~~NLGH~~------Rkl~~~~eAI~~~q--~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 444 IKSVL-NEKIFWEPTLNNLGHAY------RKLNKYEEAIDYYQ--KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred hhhcc-ccccchhHHHHhHHHHH------HHHhhHHHHHHHHH--HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 55543 34444556778999988 89999999999999 77777666655554444443 78999999999999
Q ss_pred HHH
Q 000589 1275 SLN 1277 (1403)
Q Consensus 1275 AL~ 1277 (1403)
||.
T Consensus 515 aL~ 517 (611)
T KOG1173|consen 515 ALA 517 (611)
T ss_pred HHh
Confidence 997
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-10 Score=126.34 Aligned_cols=179 Identities=20% Similarity=0.190 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..++.+|..++..|++++|+..|++++.. .+.++....++..+|.+|..+|++++|+..|++++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 445788999999999999999999999999887 35566677889999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhcCCCCHHHHH--------------HHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGL--------NQTELALRHMSRALLLLSLSSGPDHPDVAA--------------TFINVAM 1132 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~--------G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~--------------~~~nLA~ 1132 (1403)
++++....+++.+|.++... |++++|+..|++++... ++++.... ....+|.
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667889999999876 88999999999998753 33332222 2247889
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1133 MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
+|...|++.+|+..|+++++.. ++++....+++.+|.+|...|++++|..+++...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999865 4456778899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=119.11 Aligned_cols=297 Identities=13% Similarity=0.096 Sum_probs=209.0
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
.....++...+++|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++.+
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 344567788899999999999999999999999987 7888999999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH------------HHHHHHHHHHcCC
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT------------FINVAMMYQDIGK 1139 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~------------~~nLA~iy~~~g~ 1139 (1403)
.|+...+....|.++..+|++++|+.-|..++..- +.......+ +.....-+...|+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 58888999999999999999999999999998642 111112222 2233334556789
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
+..|+++..+.|++. +..+..+...|.+|...|+...|+.-++.+-.+.. +.-+..+.++.++
T Consensus 171 ~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--------DnTe~~ykis~L~- 233 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--------DNTEGHYKISQLL- 233 (504)
T ss_pred hhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--------cchHHHHHHHHHH-
Confidence 999999999999876 67788899999999999999999999998876532 2334556666666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-------------HhCChHHHHHHHHHHHHHhhc-----
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-------------AAGGSGNSGASANNSLNAALL----- 1281 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-------------~~G~~~eA~~~~ekAL~~~~~----- 1281 (1403)
...|+.+.++...+ +.|.+-++|......|..|- ..+++.++++..++.++...-
T Consensus 234 -----Y~vgd~~~sL~~iR--ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 234 -----YTVGDAENSLKEIR--ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred -----HhhhhHHHHHHHHH--HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 67777777777776 55554444433333332221 557777788888877771110
Q ss_pred ----CCCCccccchHHHHHHHHHHHH----------HHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1282 ----GETLPRGRGFDERAARAAAEVR----------KKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1282 ----G~~~p~~~~~~era~~a~~e~r----------~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
.....+.+. ++....|+++.. +..-.|+..|.....|+.|+..|+.|++.-.
T Consensus 307 ~~~~r~~c~C~~~-d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 307 YNGFRVLCTCYRE-DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred eeeeheeeecccc-cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 000001111 111222222221 1122234455666788888988888887644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=123.57 Aligned_cols=177 Identities=15% Similarity=0.047 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.+..+..++.+|..++..|++++|+..+++++... ++++....++..+|.++...|++++|+..|++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 45567889999999999999999999999998863 4556667789999999999999999999999999763
Q ss_pred cCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhCCCcHHHH--------------HHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDI--------GKMDTALRYLQEALKKNERLLGEEHIQTA--------------VCYHALA 1173 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~--------g~~deAl~~lekAL~l~~~~~G~~~~~~a--------------~~~~~LA 1173 (1403)
++++....+++.+|.++... |++++|+..|++++... +++.... .....+|
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677899999999876 88999999999998764 2222211 1234789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+|..+|++.+|+..++++++.+ ++++....++..++.++ ...|++++|..++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~------~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAY------LKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHH------HHcCCHHHHHHHHH
Confidence 99999999999999999998863 44677788899999988 89999999999877
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=136.40 Aligned_cols=305 Identities=12% Similarity=-0.043 Sum_probs=214.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH-REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~-p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
....+.+++..|++++|..++.++...........+ .....+...+|.++...|++++|..++++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 355677888999999999999998776433211111 22455667789999999999999999999987521 11222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..+|.++...|++++|+.++++++...... |.. .....++.++|.++...|++++|..++++++.+.....+
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVY-HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345677889999999999999999999999987753 332 334567899999999999999999999999999877654
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
...+....++..+|.++...|++++|..++++++.+.... + ......++..++.++ ...|++++|...+.
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~------~~~G~~~~A~~~l~- 636 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q--PQQQLQCLAMLAKIS------LARGDLDNARRYLN- 636 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C--chHHHHHHHHHHHHH------HHcCCHHHHHHHHH-
Confidence 4445455667789999999999999999999999986632 2 223344555666666 88999999999888
Q ss_pred HHHHHHHhhCh---HHHHHH-----HHHHHhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhH
Q 000589 1240 QKAIDILKAHP---DLIHAF-----QAVAAAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGL 1311 (1403)
Q Consensus 1240 qkALei~~~~p---~~~~a~-----~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~ 1311 (1403)
+++.+..... ...... ..+...|+.+.|..++....... ...+... .......+.
T Consensus 637 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~-------------~~~~~~~a~ 699 (903)
T PRK04841 637 -RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FANNHFL-------------QGQWRNIAR 699 (903)
T ss_pred -HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---CccchhH-------------HHHHHHHHH
Confidence 7766654321 111111 11125678888877765543210 0000000 012233455
Q ss_pred HHhhCCCchhhhHHHHHHHHHHhcCC
Q 000589 1312 LIRPHGLPAQALPPLTQLLNIINSSG 1337 (1403)
Q Consensus 1312 ~~~~~g~~~eA~~~l~qaL~i~~s~g 1337 (1403)
++...|++++|...|++++......+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 67788999999999999988765533
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=128.31 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=225.2
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
.|-+........+|......|..++.+.+|.+|+..|..|++++ |+.+..|.+.+.+|+..|+|++|...++
T Consensus 36 ~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar 107 (486)
T KOG0550|consen 36 SPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDAR 107 (486)
T ss_pred CccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchh
Confidence 34444455556678899999999999999999999999999983 5558899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HHHHhhcCC--CCHHHHHHHHHHHHHH
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL--------LLLSLSSGP--DHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL--------~l~~~~~g~--d~p~~a~~~~nLA~iy 1134 (1403)
+.+++ .+.....+...+.++...++..+|...++..- .....+... ..|....+...-+.++
T Consensus 108 ~~~r~--------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl 179 (486)
T KOG0550|consen 108 QSVRL--------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECL 179 (486)
T ss_pred hheec--------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhh
Confidence 99887 24445577778888888888888876665221 111111111 2255566666778999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
...|++++|...--..+++. ...+.+++.-|.++...++.+.|+.+|++++. ++++|.....++...
T Consensus 180 ~~~~~~~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMP 246 (486)
T ss_pred hhcccchhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhH
Confidence 99999999998776666653 45567788889999999999999999999998 478888888777766
Q ss_pred HHHH---HHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCc
Q 000589 1215 KTFK---MRELQMNVQKQKGQAFNAASTQKAIDILKAHP-DLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLP 1286 (1403)
Q Consensus 1215 a~l~---~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p-~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p 1286 (1403)
-.+. .+++.....|++..|.+.|. .+|.+.+.+. ..+..|.+.+ ..|+..+|+.-.+.|+....
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yt--eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~------ 318 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYT--EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS------ 318 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHH--HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH------
Confidence 5544 34888999999999999999 8888777544 3456777777 78999999999999887221
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1287 RGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1287 ~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
...+..+.++.++...+++++|++.|+++++.-.
T Consensus 319 --------------syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 319 --------------SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0112233345566666777777777777766543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-09 Score=124.17 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=188.8
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000589 984 LQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063 (1403)
Q Consensus 984 l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~ 1063 (1403)
.....+............+..+..+...|++++|..++++++.. +|....++.. +..+...|++..+....
T Consensus 29 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~ 99 (355)
T cd05804 29 AAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHV 99 (355)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhH
Confidence 33334444445555566677788888889999999888888876 2333344443 66666666666666655
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
.+++.. ....+|.....+..+|.++..+|++++|+..+++++.+ .|.....+..+|.+|...|++++|
T Consensus 100 ~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 100 ARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred HHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 555543 34567777888888999999999999999999999875 244466788899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
+.++++++..... ........+..+|.++...|++++|+.++++++.. .+..............++ .
T Consensus 168 ~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~----~ 234 (355)
T cd05804 168 IAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-----SAESDPALDLLDAASLLW----R 234 (355)
T ss_pred HHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----ccCCChHHHHhhHHHHHH----H
Confidence 9999998876521 12233456778999999999999999999888432 111112222111111111 1
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhC-hH----HHHHHHHHH--HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAH-PD----LIHAFQAVA--AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAA 1296 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~-p~----~~~a~~~La--~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~ 1296 (1403)
....|....+... . ......... +. .......++ ..|+..+|...++.............. .
T Consensus 235 ~~~~g~~~~~~~w-~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~---- 303 (355)
T cd05804 235 LELAGHVDVGDRW-E--DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----P---- 303 (355)
T ss_pred HHhcCCCChHHHH-H--HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----h----
Confidence 1333433322222 1 111111111 11 111122222 678888888888877663322100000 0
Q ss_pred HHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1297 RAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1297 ~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
...-.+...++..+..+|++++|+..+.+++.+...
T Consensus 304 ---~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 304 ---ARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred ---HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011124455567888999999999999999998865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-08 Score=123.13 Aligned_cols=284 Identities=13% Similarity=0.009 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+......|.+.+..|+++.|.+.+.++.+. .|.-...+...|.++..+|++++|..++.++.+.. ++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~ 150 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GN 150 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc
Confidence 445555666777777777777777665554 12223344556667777777777777777765431 11
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK---- 1153 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l---- 1153 (1403)
+. ..+....+.++...|+++.|+..+++.+.. .++++ .++..++.+|...|++++|++.+.+.++.
T Consensus 151 ~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 151 DN--ILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 11 112333466667777777777776666653 13333 44666677777777777776666555532
Q ss_pred ---H------------------------HHH---hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1154 ---N------------------------ERL---LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1154 ---~------------------------~~~---~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
. ... .....+.....+..+|..+...|++++|+..++++++.. ++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CC
Confidence 0 000 000111245678889999999999999999999998852 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHH-HhCChHHHHHHHHHHHHHhh
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHP--DLIHAFQAVA-AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p--~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
+.... +..+..+. ....++...++..++ ++++..+++| ....++..+. +.|++++|..+|+++.....
T Consensus 296 ~~~~~--~~~l~~~~-----~l~~~~~~~~~~~~e--~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 296 DRAIS--LPLCLPIP-----RLKPEDNEKLEKLIE--KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred cccch--hHHHHHhh-----hcCCCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 22111 00111110 123466677777777 6666655666 4444555555 88999999999995433111
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhcCC
Q 000589 1281 LGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSG 1337 (1403)
Q Consensus 1281 ~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s~g 1337 (1403)
+|... .....|.++...|+.++|..+|++++..+.+-+
T Consensus 367 ----~p~~~---------------~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 367 ----QLDAN---------------DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred ----CCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 12111 122446678889999999999999999988743
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=130.38 Aligned_cols=206 Identities=14% Similarity=0.108 Sum_probs=165.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
+..|..++..|++.+|.-+|+.|+.- +|..+.++..||.+....++-..|+..+++|+++ .|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56799999999999999999999886 7999999999999999999999999999999998 5888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----Hhh------cCC----C------------------CH--HHHHH
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLL-----SLS------SGP----D------------------HP--DVAAT 1126 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~-----~~~------~g~----d------------------~p--~~a~~ 1126 (1403)
..++..||..|...|.-.+|+.++.+-+..- ... .+. . +| ....+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 8999999999999999999999988876431 000 000 0 11 22345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR 1206 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~ 1206 (1403)
+.-||.+|...|+|+.|+.+|+.||... |....+|+.||-.+..-.+..+|+..|++|+++ .|.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------QPG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCC
Confidence 6678888888888888888888888743 667778888888888888888888888888876 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1207 TKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1207 t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
...+.++||..+ ..+|.|.+|..++- .||.+.+
T Consensus 497 yVR~RyNlgIS~------mNlG~ykEA~~hlL--~AL~mq~ 529 (579)
T KOG1125|consen 497 YVRVRYNLGISC------MNLGAYKEAVKHLL--EALSMQR 529 (579)
T ss_pred eeeeehhhhhhh------hhhhhHHHHHHHHH--HHHHhhh
Confidence 777788888877 77788888888777 6666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=130.92 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...+..+|.+....+++++|+..|.+.+.. .+.....+..++.+ ...+++++|+.+++++.+..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------ 107 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------ 107 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--------cccccccccccccc-cccccccccccccccccccc------
Confidence 3456667899999999999999999999876 23344556677777 78999999999998876542
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.++ ..+..+..++...++++++...+.++... ...+.....+..+|.++...|++++|+.+|++|+++.
T Consensus 108 ~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 176 (280)
T PF13429_consen 108 GDP---RYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-- 176 (280)
T ss_dssp -------------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 122 33455667789999999999999997742 2234567779999999999999999999999999976
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|....+...++.++...|+++++.+.++...... +.++.. +..++..+ ...|++++|+..
T Consensus 177 ------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~------~~lg~~~~Al~~ 236 (280)
T PF13429_consen 177 ------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAY------LQLGRYEEALEY 236 (280)
T ss_dssp ------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHH------HHHT-HHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHh------cccccccccccc
Confidence 5556677889999999999999887777665542 223333 34566666 788999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
++ +++...+.+|.....+...- ..|+.++|..++++++.
T Consensus 237 ~~--~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LE--KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH--HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cc--cccccccccccccccccccccccccccccccccccccc
Confidence 99 55444444444443333333 88999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=123.40 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+...+..|...+..|+|+.|+..+.++-.. .++|.. .+...+.+...+|+++.|..++.++.+..
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 34666777888888888998888666654332 122322 23444566688899999999988887642
Q ss_pred CCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDT-AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1076 ~d~p~~-~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
|+. .......+.++...|++++|+..++++++. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 149 ---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 ---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 221 122234478888889999999888888764 23334557778888888899988886666554210
Q ss_pred -------------------HHH---------------hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1155 -------------------ERL---------------LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1155 -------------------~~~---------------~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
... .....+....+...+|..+...|+.++|...++++++.
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 000 00112334556778899999999999999999988762
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHH---HHHH-HhCChHHHHHHHHHHH
Q 000589 1201 GEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAF---QAVA-AAGGSGNSGASANNSL 1276 (1403)
Q Consensus 1201 g~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~---~~La-~~G~~~eA~~~~ekAL 1276 (1403)
+.++.....+.. ...++.++++...+ ...+.+|+....+ ..++ ..+++++|..+|++++
T Consensus 293 -~~~~~l~~l~~~-----------l~~~~~~~al~~~e-----~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 293 -QYDERLVLLIPR-----------LKTNNPEQLEKVLR-----QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred -CCCHHHHHHHhh-----------ccCCChHHHHHHHH-----HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234433222211 23488888888887 4455555555444 4444 8899999999999999
Q ss_pred HHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1277 NAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1277 ~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
... |.... ....+.++..+|+.++|..+|++++.+...
T Consensus 356 ~~~------P~~~~---------------~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 356 KQR------PDAYD---------------YAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred hcC------CCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 732 22111 122344678889999999999999988754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-08 Score=107.29 Aligned_cols=252 Identities=12% Similarity=0.073 Sum_probs=190.7
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
++...+..+.+|.+|...|..+.|+.+.+-.+.. .+-.......++..||.-|+..|-++.|+..|...++.-
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--- 137 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--- 137 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---
Confidence 4455677888999999999999999988766553 111233456788999999999999999999998876642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.....++..|-.+|....+|++|++..++...+-.. +....++..|+.||..+....+.+.|+.++.+|+..
T Consensus 138 -----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 138 -----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred -----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 223457788999999999999999998887765322 245678899999999999999999999999999985
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +....+-..+|.++...|+|..|++.++.+++- ++..+.++...|...| ..+|+.++.
T Consensus 210 ~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y------~~lg~~~~~ 268 (389)
T COG2956 210 D--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECY------AQLGKPAEG 268 (389)
T ss_pred C--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHH------HHhCCHHHH
Confidence 4 556667778999999999999999999887763 4556667788888888 899999999
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccc
Q 000589 1234 FNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRG 1290 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~ 1290 (1403)
+..+. ++++.... ++...++..+- ...-.+.|..++.+-++ .||.++.
T Consensus 269 ~~fL~--~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~------r~Pt~~g 317 (389)
T COG2956 269 LNFLR--RAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR------RKPTMRG 317 (389)
T ss_pred HHHHH--HHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh------hCCcHHH
Confidence 98888 55555433 33333444443 45556667666666554 4565555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=124.04 Aligned_cols=311 Identities=13% Similarity=0.098 Sum_probs=181.4
Q ss_pred HHHHhhhhhhhhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH
Q 000589 979 SDILNLQPVVKHSVPICSE-AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057 (1403)
Q Consensus 979 ~dI~~l~pvvK~~~~~~~~-A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~ 1057 (1403)
.++....++...+-...+. ...|+.+|.+|-++|+.+++......|-.+ +|.....+..++....++|++.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcccHH
Confidence 3444444444444444443 345566666666666666666665555444 1222245556666666667777
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHH
Q 000589 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD-VAATFINVAMMYQD 1136 (1403)
Q Consensus 1058 eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~-~a~~~~nLA~iy~~ 1136 (1403)
+|.-+|.+||.. .|.....++..+.+|.++|++..|+..|.+++.+.. +.+-. .-..-...+..+..
T Consensus 225 qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 225 QARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHH
Confidence 777777777765 355566677777777777777777777777776531 11111 11222233444555
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-----------------------------hC----------------------------
Q 000589 1137 IGKMDTALRYLQEALKKNERL-----------------------------LG---------------------------- 1159 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~-----------------------------~G---------------------------- 1159 (1403)
.++-+.|++.++.++...... .+
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 555555555555444310000 00
Q ss_pred -----------------------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1160 -----------------------------------EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1160 -----------------------------------~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.........+..++.+|...|++.+|+.++..+... ..
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~ 445 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-------EG 445 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------cc
Confidence 001123456788999999999999999998876552 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCC
Q 000589 1205 SRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGE 1283 (1403)
Q Consensus 1205 ~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~ 1283 (1403)
......+..+|.+| ..++.+++|+..|. +++...+.+-+....+..|- ++|+.++|.+.+++..
T Consensus 446 ~~~~~vw~~~a~c~------~~l~e~e~A~e~y~--kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~------- 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCY------MELGEYEEAIEFYE--KVLILAPDNLDARITLASLYQQLGNHEKALETLEQII------- 510 (895)
T ss_pred ccchhhhHHHHHHH------HHHhhHHHHHHHHH--HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc-------
Confidence 12245566677777 89999999999999 55555544444443333333 7899998887776654
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1284 TLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1284 ~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.|+.+... + .+....+.+...+...+...|+.++=+....+++..+-.
T Consensus 511 -~~D~~~~e--~-~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~ 558 (895)
T KOG2076|consen 511 -NPDGRNAE--A-CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLK 558 (895)
T ss_pred -CCCccchh--h-ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22222211 0 011122345556667788889988877766666666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-08 Score=108.12 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=185.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
.|.-++...+.++|+++|.+.++. ++....+...||.+|...|+.+.|+...+..+... +........
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 566677778899999999998875 67889999999999999999999999887765431 111234567
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
++..||.-|...|-++.|+..|....+. ......++..|-.+|+...+|++|++..++...+..+ +...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 8889999999999999999999887642 1223467889999999999999999988877665422 2356
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAI 1243 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkAL 1243 (1403)
..+..|..||..+....+++.|..++++|++. ++....+...+|.+. ...|+|.+|+..++
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~------~~~g~y~~AV~~~e----- 238 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVE------LAKGDYQKAVEALE----- 238 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHH------HhccchHHHHHHHH-----
Confidence 78899999999999999999999999999985 566677777888887 89999999999998
Q ss_pred HHHhhChHHH-HHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1244 DILKAHPDLI-HAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1244 ei~~~~p~~~-~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
.+...+|+.. .+...|. ..|+.++....+.++.+
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666544 2222222 77999999999998887
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.9e-08 Score=114.95 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=159.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
+..++..|++..+...+.+++.. ..+.+|....++..+|.++..+|++++|+..+++++.+ .|....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~ 150 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWA 150 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHH
Confidence 55666667666666666666554 34567888889999999999999999999999999997 3555778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
+..+|.+++..|++++|+.++.+++..... +.......+..+|.++...|++++|+.+|++++... +....
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~ 221 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDP 221 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCCh
Confidence 899999999999999999999999976422 122335667899999999999999999999986432 11111
Q ss_pred HHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 000589 1165 TAVC--YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKA 1242 (1403)
Q Consensus 1165 ~a~~--~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkA 1242 (1403)
.... ...+...+...|....+..+ +.+....... .+.+. ........+.+ ....|+.++|...+. ..
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~-~~~~~-~~~~~~~~a~~------~~~~~~~~~a~~~L~--~l 290 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWH-FPDHG-LAFNDLHAALA------LAGAGDKDALDKLLA--AL 290 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhh-cCccc-chHHHHHHHHH------HhcCCCHHHHHHHHH--HH
Confidence 1111 11333444445554444443 2222221111 01111 11111122222 367888888888886 32
Q ss_pred HHHHhh---C---hHHH--HHHHHHH--HhCChHHHHHHHHHHHH-HhhcCCCC
Q 000589 1243 IDILKA---H---PDLI--HAFQAVA--AAGGSGNSGASANNSLN-AALLGETL 1285 (1403)
Q Consensus 1243 Lei~~~---~---p~~~--~a~~~La--~~G~~~eA~~~~ekAL~-~~~~G~~~ 1285 (1403)
...... . .... .....++ .+|++.+|...+..++. ...+|..|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 222222 1 1112 2223333 88999999999999999 44555544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-08 Score=110.16 Aligned_cols=282 Identities=12% Similarity=0.063 Sum_probs=204.8
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~k 1065 (1403)
.++.+++........|-.+..+...+|.|++++.+---.++.+... .+......++.+|+..+....++.+++.|..-
T Consensus 31 ~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~ 108 (518)
T KOG1941|consen 31 KVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKT 108 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444455556667778888999999888777666665543 22345678999999999999999999988877
Q ss_pred HHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1066 ELIINERCLGLDH-PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTAL 1144 (1403)
Q Consensus 1066 AL~i~er~lg~d~-p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl 1144 (1403)
.+.+- |.+. ..-.+....||..+..++.+++++++|+.|+.+.... .|...-..++..||..+..+.++++|+
T Consensus 109 ~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal 182 (518)
T KOG1941|consen 109 CLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKAL 182 (518)
T ss_pred HhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHh
Confidence 66542 2221 1223566679999999999999999999999987664 333445677899999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 000589 1145 RYLQEALKKNERLL-GEE-HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMREL 1222 (1403)
Q Consensus 1145 ~~lekAL~l~~~~~-G~~-~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~ 1222 (1403)
-+..+|+++...+. +.. .-....+++.++..|..+|..-.|.++.++|.++.-.. .+.+....++..++.+|
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIy---- 256 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIY---- 256 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH----
Confidence 99999999987764 222 23456778999999999999999999999999987653 34566677788888888
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH---------HhCChHHHHHHHHHHHH-HhhcCCCC
Q 000589 1223 QMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA---------AAGGSGNSGASANNSLN-AALLGETL 1285 (1403)
Q Consensus 1223 ~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La---------~~G~~~eA~~~~ekAL~-~~~~G~~~ 1285 (1403)
...|+.+.|..-|+ +|+.+.. +.-....++...| ..+..=+|++.-.+.++ ....|-.|
T Consensus 257 --R~~gd~e~af~rYe--~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 257 --RSRGDLERAFRRYE--QAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred --HhcccHhHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 88999999888777 7777665 2333334444444 12223457777777777 44444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=117.50 Aligned_cols=209 Identities=18% Similarity=0.121 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHh------cCC---CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000589 1016 EAYTLFSEAFSILQQV------TGP---MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYG 1086 (1403)
Q Consensus 1016 eA~~~l~eAL~l~~~i------~g~---~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~ 1086 (1403)
+|.+++.+|-..++.. ++. +....+..|...|.+|...+++++|...|.+|..+.++. .+....+.+|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~ 79 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYE 79 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4556666665554432 222 233456778888899999999999999999999998873 34456788888
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI-GKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1087 nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~-g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
+.+.+|... ++++|+.+|++|+.++... ......+.++.++|.+|... |++++|+++|++|+++++... .....
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA 154 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence 888888777 9999999999999998764 33456789999999999999 999999999999999987642 34556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..++..+|.++...|+|++|++.|++........ ..........+.....++ ...|+.-.|...+.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~-~l~~~~~~~~~l~a~l~~------L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN-NLLKYSAKEYFLKAILCH------LAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH-CTTGHHHHHHHHHHHHHH------HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHH------HHcCCHHHHHHHHH
Confidence 7788999999999999999999999887643211 011223444444455555 77889888887777
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=117.18 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..|...|..|...+++++|.+.|.+|..++.+. .+....+.+|...+.+|... ++++|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 5666678999999999999999999999998873 33456788888888888766 9999999999999999764 33
Q ss_pred ChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGL-NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~-G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
....+.++.++|.+|... |++++|+++|++|++++... ........++.++|.++..+|+|++|+..|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 456688999999999999 99999999999999998875 233456788899999999999999999999998875321
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.. -........+...+.++...||+-.|...+++...+
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 10 012234455678888999999999998888776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-07 Score=103.23 Aligned_cols=299 Identities=16% Similarity=0.115 Sum_probs=207.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
++..-.+++..|.+|+..|+-.-|+.-+.+++++ .|+...+....|.++..+|++++|+.-|.+.+...-..
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 3444667889999999999999999999999998 68889999999999999999999999999988742100
Q ss_pred cCC--------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1074 LGL--------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1074 lg~--------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
+. ...+..+.+.....-++..|++..|+.+..+.+++ .|..+..+..-+.+|...|+...|+.
T Consensus 140 -~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 140 -GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred -chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHH
Confidence 00 00011123334455567789999999999999976 37778888899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HH
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR---EL 1222 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r---~~ 1222 (1403)
-++.+-++. .+....++.++.+++..|+.+.++.-.++++.+ .++|......|..|..+-.. ..
T Consensus 211 Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 211 DLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999888765 344567889999999999999999999888874 45554443333333222110 11
Q ss_pred HH--------------------------------------HHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----
Q 000589 1223 QM--------------------------------------NVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA---- 1260 (1403)
Q Consensus 1223 ~~--------------------------------------~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La---- 1260 (1403)
.. ..-+++.+|++... +++...|+.+.++...|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~-----evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK-----EVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH-----HHHhcCchHHHHHHHHHHHHh
Confidence 11 23344555555444 55555666666666666
Q ss_pred HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH--HHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1261 AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV--RKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1261 ~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~--r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
....|+.|+.-|++|++ ..+.|..++.-.++|.++..+. |....+.|. .+...-.+-...|+.+..-
T Consensus 353 ~dE~YD~AI~dye~A~e---~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV--kRnAsKqEI~KAYRKlAqk 421 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALE---LNESNTRAREGLERAKRLKKQSGKRDYYKILGV--KRNASKQEITKAYRKLAQK 421 (504)
T ss_pred hhHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHhccchHHHHhhh--cccccHHHHHHHHHHHHHh
Confidence 44679999999999987 3345666666667777754333 444444433 3333444445556655443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-08 Score=112.45 Aligned_cols=266 Identities=15% Similarity=0.103 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+..+|.+++..|++.+|+..|+++..+ +|.....+-..|.++...|+++.-..+-...+.+.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~------- 296 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV------- 296 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-------
Confidence 556778899999999999999999998877 78888999999999999999988777666665552
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
..+..-+.--+..++...++..|+.+-++++.. .+.....+..-|..+..+++.++|+-.|+.|..+.
T Consensus 297 -~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 297 -KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred -hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 123334555677788889999999999999975 34455678889999999999999999999999876
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHhhcHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK-TFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La-~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|....+|..|-.+|...|.+.+|....+.+++.+. ..+.++..+| .+.. ..-.-.++|..+
T Consensus 365 -----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~-----~dp~~rEKAKkf 426 (564)
T KOG1174|consen 365 -----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLF-----PDPRMREKAKKF 426 (564)
T ss_pred -----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeec-----cCchhHHHHHHH
Confidence 66788999999999999999999999999988764 2344444453 2220 222234567777
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ ++ ++..|+...+...+| ..|.++.++.+++++|.... + -.+....|..
T Consensus 427 ~e--k~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D-------------------~~LH~~Lgd~ 480 (564)
T KOG1174|consen 427 AE--KS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D-------------------VNLHNHLGDI 480 (564)
T ss_pred HH--hh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c-------------------cHHHHHHHHH
Confidence 77 44 445566666666555 77999999999999987211 0 1255556778
Q ss_pred HhhCCCchhhhHHHHHHHHHHh
Q 000589 1313 IRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
...+..+++|+..|..||.+-.
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCc
Confidence 8888999999999999988744
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=125.01 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=157.1
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE- 1071 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e- 1071 (1403)
.++..++++..||.+....++=..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...-
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 34566888999999999999999999999999998 788889999999999999999999999988655320
Q ss_pred ----Hh------cC----CCC------------------h--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1072 ----RC------LG----LDH------------------P--DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1072 ----r~------lg----~d~------------------p--~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
.. .+ ..+ + ....++..||.+|+..|+|++|+.+|+.||..
T Consensus 386 y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------ 459 (579)
T KOG1125|consen 386 YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------ 459 (579)
T ss_pred chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------
Confidence 00 00 001 1 12346778999999999999999999999964
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
.|.....|+.||-.+..-.+..+|+..|++|+++. |.+.++.++||..|+.+|.|++|..||-.|+.+.+
T Consensus 460 --~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 460 --KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred --CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 58888999999999999999999999999999986 77889999999999999999999999999999987
Q ss_pred HHh
Q 000589 1198 KQL 1200 (1403)
Q Consensus 1198 ~~l 1200 (1403)
+..
T Consensus 530 ks~ 532 (579)
T KOG1125|consen 530 KSR 532 (579)
T ss_pred ccc
Confidence 643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=112.28 Aligned_cols=290 Identities=17% Similarity=0.115 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+-..|...+..|+|+.|+.+|.+|+.+ +|.....|.+...+|..+|+|++|+.--.+++++ .
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l--------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~ 66 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIML--------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------N 66 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHcc--------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------C
Confidence 44566789999999999999999999998 4445678899999999999999999999999887 5
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC--------------------
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG-------------------- 1138 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g-------------------- 1138 (1403)
|.+...|..+|..++.+|+|++|+..|.+.|+. .|.....+..|+.++....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 899999999999999999999999999999975 3444445555555542210
Q ss_pred -CHHHHHHHHHHHHHHHHH----------------H----hC-------------------C------------CcH---
Q 000589 1139 -KMDTALRYLQEALKKNER----------------L----LG-------------------E------------EHI--- 1163 (1403)
Q Consensus 1139 -~~deAl~~lekAL~l~~~----------------~----~G-------------------~------------~~~--- 1163 (1403)
++-.....|...++...+ . .+ + +..
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 011111112222211110 0 00 0 000
Q ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1164 ---QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1164 ---~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
..+.-...||.......+|..|+++|..++++. . ...-+.+.+.+| ...+.+.+.+....
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~--------~it~~~n~aA~~------~e~~~~~~c~~~c~-- 281 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-T--------DITYLNNIAAVY------LERGKYAECIELCE-- 281 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-h--------hhHHHHHHHHHH------HhccHHHHhhcchH--
Confidence 134456789999999999999999999999974 2 223344555555 56666666655555
Q ss_pred HHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH----------
Q 000589 1241 KAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV---------- 1302 (1403)
Q Consensus 1241 kALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~---------- 1302 (1403)
++++... ..-.+..++..+| ..++++.|+.+|++++..... |........++.+..+.
T Consensus 282 ~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~ 357 (539)
T KOG0548|consen 282 KAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEK 357 (539)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhH
Confidence 4444433 1222444555555 668999999999999872221 33332222222222221
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHHH
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
-.-.+..|..+...|+|..|+..|.+|+..-
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 1222333888899999999999999988765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=97.20 Aligned_cols=78 Identities=33% Similarity=0.585 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
||.++.++.++|.+|..+|+|++|+.+|++|+++ .+..|++++.++.++.++|.+|..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 77778888899999999999999999999999999999998763
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=96.95 Aligned_cols=78 Identities=40% Similarity=0.598 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
||.++.+|.++|.+|..+|+|++|+.+|++++.+ ...+|++++.++.++.++|.++..+|++++|+.++++|+++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678888999999999999999999999999999999998753
|
... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-07 Score=121.89 Aligned_cols=166 Identities=12% Similarity=0.027 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...+..+.+...+|+++.|++.|++++.. .|........++.++...|++++|+.++++++.-
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p------- 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS------- 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------
Confidence 3557788999999999999999999999987 3333222228888888999999999999999821
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.+.....+..+|.+|..+|+|++|+++|++++.. +|....++..|+.+|...++.++|+..+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 2333445556688999999999999999999975 24445556788999999999999999999988754
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+. ...+..++.++..+++..+|++.++++++.
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 22 222344566666677887799999999875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=105.96 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000589 1018 YTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQ 1097 (1403)
Q Consensus 1018 ~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~ 1097 (1403)
..+|++++++ +|.. +..+|.++...|++++|+.+|++++.+ .|....++.++|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 5678888887 4553 557899999999999999999999887 47778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000589 1098 TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1098 ~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
+++|+..|.+++.+ .|....+++++|.++..+|++++|+..|++|+++. |.....+.+++.+..
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence 99999999999975 46667789999999999999999999999999875 344445556665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-07 Score=102.75 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+......|.-++...++++|+....+.+...... ......|..+..+...+|.|.+++.+.--.+..+... .|
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~d 78 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--ED 78 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3345566778888999999999999988876543 3456678888999999999999998887777766554 34
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH-PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~-p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
......+|.||+..+...-++.+++.|-+..+.+- |.+. ..-......+|..+..++.+++++++|+.|+++...
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 45667899999999999999999999888777542 2111 112244556899999999999999999999998755
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL-GEEDSRT-KDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l-g~~~~~t-~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
. .+......++..||.+|....|+++|+-+..+|+++....- ++.+... ..+++.++..+ ..+|....|.
T Consensus 155 ~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal------R~~G~LgdA~ 226 (518)
T KOG1941|consen 155 N--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL------RLLGRLGDAM 226 (518)
T ss_pred c--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH------HHhcccccHH
Confidence 3 23344567889999999999999999999999999876542 3323222 23344444444 8899999999
Q ss_pred HHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCC
Q 000589 1235 NAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGET 1284 (1403)
Q Consensus 1235 ~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~ 1284 (1403)
++.+ +|.++.- +.+..+..+..+| ..|+.+.|..-|++|.. .+.+|..
T Consensus 227 e~C~--Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 227 ECCE--EAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHH--HHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 9988 7766654 4455555555566 67999999999999998 4444444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=114.30 Aligned_cols=234 Identities=11% Similarity=0.006 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+...+.....+|+++.|..+|.++.+.. ++. .. ......+.++...|++++|+..+++++..
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-------- 182 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELA-----DND-QL-PVEITRVRIQLARNENHAARHGVDKLLEV-------- 182 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 3345556777799999999999999997751 111 11 22234489999999999999999998776
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------Hh---------------hcCCCCHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL-------------------SL---------------SSGPDHPDV 1123 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~-------------------~~---------------~~g~d~p~~ 1123 (1403)
.|....++..++.+|...|+|++|+..+.+..... .. .+....+..
T Consensus 183 ~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 183 APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence 35555678888999999999999997666555210 00 001122334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
..+...+|..+...|+.++|...++++++. +.++..... ++. ...+++++++..+++.++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~~--l~~~~~~~al~~~e~~lk~-------- 323 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IPR--LKTNNPEQLEKVLRQQIKQ-------- 323 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hhh--ccCCChHHHHHHHHHHHhh--------
Confidence 556778899999999999999999999872 223322222 222 2348999999988887653
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+|+....+..+|.++ ..++++++|...++ ++++. .|+... +..|+ .+|+.++|..+|++++.
T Consensus 324 ~P~~~~l~l~lgrl~------~~~~~~~~A~~~le--~al~~---~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLL------MKHGEWQEASLAFR--AALKQ---RPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH--HHHhc---CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556667777777 88999999999999 55544 444332 12233 88999999999999987
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=121.90 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=140.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1006 KVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1006 ~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
.+.-..+....+.+.+-+++.+... .+....++.+||.+...+|.+++|+.+++.++++ .|+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~ 123 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAF 123 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHH
Confidence 4445556666666667777766544 4566889999999999999999999999999998 48888999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
.+++.++.+.+++++|+..+++++.. .|+.+..++.+|.++.++|+|++|+.+|++++. .++..
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~ 187 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEF 187 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCc
Confidence 99999999999999999999999965 477788899999999999999999999999997 23566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
..++..+|.++..+|+.++|...|++|++.+
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=109.53 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...-++|...+...++..|+..|..++.+. .....+.+.|.+|+.+|.+.+.+..+.++++...... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46677789999999999999999999999983 3456678899999999999999999999887643321 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--h----------------cCCCCHHHHHHHHHHHHHHHHcC
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL--S----------------SGPDHPDVAATFINVAMMYQDIG 1138 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~--~----------------~g~d~p~~a~~~~nLA~iy~~~g 1138 (1403)
+...++.++..+|..|..+++++.|+.+|.+++.-.+. . .---.|..+.-...-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 22335667777888999999999999999998864332 0 00123444555566688999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1139 KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1139 ~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
+|..|+.+|.+|+... |..+..|.|.|.+|..+|++..|+.-.+.++++ +|....++..-+.++
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAAL 436 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHH
Confidence 9999999999988753 778899999999999999999999999999886 667776776666666
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1219 MRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1219 ~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
...++|+.|++.|. ++++...
T Consensus 437 ------~~mk~ydkAleay~--eale~dp 457 (539)
T KOG0548|consen 437 ------RAMKEYDKALEAYQ--EALELDP 457 (539)
T ss_pred ------HHHHHHHHHHHHHH--HHHhcCc
Confidence 88999999999998 5555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-07 Score=112.45 Aligned_cols=244 Identities=14% Similarity=0.006 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+...|.++..+|+++.|..++.++.+.. +++. ..+....+.++...|++++|...+++.+..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 4556667899999999999999999987652 1111 123444588899999999999998888776
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHhhc---------------CCCCH----HH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL---------------LSLSS---------------GPDHP----DV 1123 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l---------------~~~~~---------------g~d~p----~~ 1123 (1403)
.|....++..++.+|...|++++|++++.+.++. +...+ -...| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 3444567888999999999999888877766632 00000 00122 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
...+..+|..+...|++++|+..++++++.. +++..... ...........++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5677888999999999999999999999864 22221110 112222334457888888888887763 345
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIH--AFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~--a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
++. ......+|.++ ..+|++++|..+++ ++. .+..+|+... .+..+. ..|+.++|..+|++++.
T Consensus 332 ~~~-~~ll~sLg~l~------~~~~~~~~A~~~le--~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPK-CCINRALGQLL------MKHGEFIEAADAFK--NVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Chh-HHHHHHHHHHH------HHcccHHHHHHHHH--HhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 553 25556677776 88999999999887 321 2222343322 333333 88999999999999988
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-07 Score=104.93 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.-+.-+.++...|++++|...-...+.+ ++..+.++...|.+++..++.+.|+.+|+++|.+ +++|.
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~ 237 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQ 237 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chhhh
Confidence 3344688899999999999877666665 5677888999999999999999999999999987 45554
Q ss_pred hH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1080 DT---------AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1080 ~~---------~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.. ...+..-|.-.+..|+|..|.++|.+||.+-.. +....+..|.|.|.+...+|+..+|+.-.+.|
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 43 344556678889999999999999999986321 23346788999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
+.+. +.+..++...|.++...++|++|++.|++|++.-
T Consensus 314 l~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 314 LKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9975 5678899999999999999999999999999863
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-07 Score=119.53 Aligned_cols=236 Identities=13% Similarity=0.056 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|.+.|++++|..++.+..... .|.
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi 575 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI 575 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC
Confidence 4567777888888889999998888876553 11233 4578888888888899988888888765421 111
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|+ ..+|+.|...|.+.|++++|+++|+++... | .+....+|+.+...|.+.|++++|+.+|++..+.
T Consensus 576 -~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--- 643 (1060)
T PLN03218 576 -DPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--- 643 (1060)
T ss_pred -CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Confidence 233 356777788888888888888888877642 1 1223456778888888888888888888876542
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|- .|+ ..+|..|...|...|++++|.++++++.+. | ......++..|...| ...|++++|..+
T Consensus 644 --Gv-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G--~~pd~~tynsLI~ay------~k~G~~eeA~~l 706 (1060)
T PLN03218 644 --GV-KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-----G--IKLGTVSYSSLMGAC------SNAKNWKKALEL 706 (1060)
T ss_pred --CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHH------HhCCCHHHHHHH
Confidence 11 122 346777888888888888888888776542 1 111233556666666 778888888887
Q ss_pred HHHHHHHHHHh--hChHHHHHHHHH----HHhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILK--AHPDLIHAFQAV----AAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~--~~p~~~~a~~~L----a~~G~~~eA~~~~ekAL~ 1277 (1403)
+. ++.. ..|+.. +|..| ++.|++++|..+|++...
T Consensus 707 f~-----eM~~~g~~Pdvv-tyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 707 YE-----DIKSIKLRPTVS-TMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HH-----HHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 3322 233332 22222 277888888888887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-06 Score=101.11 Aligned_cols=301 Identities=13% Similarity=0.065 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHH-ccccCCccHHHhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHH
Q 000589 921 TLWSDLKEFAKLK-YQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAK 999 (1403)
Q Consensus 921 ~lw~~I~~~~~~r-f~y~l~~~~~~~~~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~ 999 (1403)
.+|.+|.-.+... +........+..++..+.+|.=...+|- .++.|...... +...++ +.-+.-++|.. ..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~--lak~~~~~Gdn-~~a~~~---Fe~~~~~dpy~--i~ 267 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA--LGKCLYYNGDY-FQAEDI---FSSTLCANPDN--VE 267 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH--HhhhhhhhcCc-hHHHHH---HHHHhhCChhh--hh
Confidence 4666776655533 3333333333455555556553333321 12233222221 111111 12222333333 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+-..|.++...|+++.-..+....+.+.. ..+.-+.--+.+.+...++..|+.+-+|+|+. .+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~ 331 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK--------YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EP 331 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------Cc
Confidence 334457788888999887777777666632 23444555677788889999999999999887 34
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....+|..-|.++..+++.++|+-.|+.|..+. |....+|..|-.+|...|++.+|....+.+++..
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~----- 398 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF----- 398 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-----
Confidence 556788889999999999999999999998763 7778889999999999999999999999988876
Q ss_pred CCcHHHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALA-IAFN-CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA-~~y~-~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+..+.++..+| .++. .---.++|..++++++.+ .|...-+...++.+. ...|.++.++.++
T Consensus 399 ---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~------~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 399 ---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELC------QVEGPTKDIIKLL 461 (564)
T ss_pred ---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHH------HhhCccchHHHHH
Confidence 44566666665 3333 233457889999998875 566666777788877 7889999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
+ ++|..+.+..-....-.-++.+..+++|+.+|..||+
T Consensus 462 e--~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 E--KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred H--HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8 5555554322211111222277889999999999987
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-06 Score=111.03 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
.+.......+..+|.++..+|++++|+++|+++++. .|....++..|+.+|...++.++|+..+++++...
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d- 166 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD- 166 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-
Confidence 444555677777899999999999999999999988 34445666788999999999999999999987762
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|.. ..+..++.++...+++.+|+..+++++..
T Consensus 167 -------p~~-~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 167 -------PTV-QNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred -------cch-HHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 332 23355666776788887899999999875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.3e-07 Score=104.28 Aligned_cols=210 Identities=9% Similarity=0.143 Sum_probs=158.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
+-.++...+++++|+.++.+++.+ +|....++...+.++..+| ++++|+.++.+++.. +|...
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npkny 106 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNY 106 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcch
Confidence 344566788999999999999998 7888889999999999998 689999999999986 46777
Q ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1083 HSYGNMALFYHGLNQT--ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~--~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
+++++.+.++..+|+. ++++.++.+++.+ +|....++.+.+.++...|++++|++++.+++++.
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------ 172 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------ 172 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------
Confidence 7899999999888874 7788999898865 57778899999999999999999999999999864
Q ss_pred CcHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCM---GAF----KLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~---Gd~----~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
+....+++..+.++... |.+ ++++.+..+++.+ .|....++..++.++... -...++..+|
T Consensus 173 --~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~--~~~l~~~~~~ 240 (320)
T PLN02789 173 --VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDD--KEALVSDPEV 240 (320)
T ss_pred --CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcC--CcccccchhH
Confidence 44566788888887765 333 4678888888775 445556667777766210 0012445567
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1234 FNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+..+. ++....|....++.-|+
T Consensus 241 ~~~~~-----~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 241 SSVCL-----EVLSKDSNHVFALSDLL 262 (320)
T ss_pred HHHHH-----HhhcccCCcHHHHHHHH
Confidence 76666 33334454444555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=101.34 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
...+.++.++|.++..+|++++|+.+|++++.+. ++++..+.++.++|.+|...|++++|+.+|++|+.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3457788999999999999999999999999873 3455667799999999999999999999999999874221
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La 1215 (1403)
+..+...+.++.++|..+..+|+++.|+.++++++.++++.++.++..+..+..+++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 111234445555666666699999999999999999999999988876666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=120.96 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
++..++.+|.+....|++++|+.++..++++ .|+...+..++|.++.+++++++|+..+++++..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------- 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------- 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------
Confidence 3788899999999999999999999999998 6788899999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .+|+...++.++|.++...|+.++|...|++|++..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-- 218 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-- 218 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--
Confidence 478888999999999999999999999999995 256777889999999999999999999999999875
Q ss_pred HhCCCcHHHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNC 1178 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~ 1178 (1403)
++........+..|...|..
T Consensus 219 --~~~~~~~~~~~~~~~~~~~~ 238 (694)
T PRK15179 219 --GDGARKLTRRLVDLNADLAA 238 (694)
T ss_pred --CcchHHHHHHHHHHHHHHHH
Confidence 23333334444455544433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-05 Score=94.65 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN---------- 1070 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~---------- 1070 (1403)
.|+.+.+.++.+..++|+..+.-+ ++..-.++...|+++|++|+|++|...|+..+.-.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 378999999999999999888711 11223466778999999999999999999864321
Q ss_pred -------------HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHH
Q 000589 1071 -------------ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH-------PDVAATFINV 1130 (1403)
Q Consensus 1071 -------------er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~-------p~~a~~~~nL 1130 (1403)
.+.......++-..++|.|.++...|+|.+|++.+++|+.+++..+..++ .++..+...|
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 01111122235677899999999999999999999999998887654422 2356678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l 1153 (1403)
+.+++.+|+..+|...|...+..
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHh
Confidence 99999999999999999877764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-06 Score=104.95 Aligned_cols=222 Identities=16% Similarity=0.147 Sum_probs=159.3
Q ss_pred HhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000589 982 LNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIM 1061 (1403)
Q Consensus 982 ~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~ 1061 (1403)
.+..-+..|+.|... ..|..++.....+|++++|.-+|.+|++. .|.....+...+.+|.++|++..|.+
T Consensus 193 l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 193 LNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHH
Confidence 344555667777665 77888899999999999999999999998 55667788889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhH-------------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Q 000589 1062 QQHKELIINERCLGLDHPDT-------------------------------------AHSYGNMALFYHGLNQTELALRH 1104 (1403)
Q Consensus 1062 ~~~kAL~i~er~lg~d~p~~-------------------------------------~~a~~nLA~~~~~~G~~~eAl~~ 1104 (1403)
.|.+++...- +.+.+. ...++-++.++.....++.|+.+
T Consensus 263 ~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 263 TFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 9988877631 001111 11233445555555555555554
Q ss_pred HHHHHH----------------------HHH-------------hh-----c----------------CCCCHHHHHHHH
Q 000589 1105 MSRALL----------------------LLS-------------LS-----S----------------GPDHPDVAATFI 1128 (1403)
Q Consensus 1105 l~rAL~----------------------l~~-------------~~-----~----------------g~d~p~~a~~~~ 1128 (1403)
...... ++. .. + .....+....+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 433322 000 00 0 000123456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~ 1208 (1403)
.++..|...|+|.+|+.+|-.+...- ....+..|..+|.+|..+|.+++|+++|.+++.. .|...
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~ 483 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL 483 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence 99999999999999999998776532 2234778999999999999999999999999985 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
++...|+.++ ..+|+.++|.+.+.
T Consensus 484 D~Ri~Lasl~------~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 484 DARITLASLY------QQLGNHEKALETLE 507 (895)
T ss_pred hhhhhHHHHH------HhcCCHHHHHHHHh
Confidence 7778888888 89999999998877
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=98.88 Aligned_cols=112 Identities=14% Similarity=-0.033 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
++.+|..+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 566899999999999999999999887 5777889999999999999999999999999987 467
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
...+++++|.++..+|++++|+..|++++.+. |.....+.++|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 77899999999999999999999999999863 4444456666665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-06 Score=114.60 Aligned_cols=237 Identities=16% Similarity=0.103 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|.++|.+...... ...|+ ..+|+.|...|.+.|++++|..+|++.... |
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g- 609 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N- 609 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-
Confidence 356788888999999999999999998765311 11233 357888888999999999999999887653 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
-+.....|+.+...|...|++++|+.+|.+.... | -.|+ ..+|..|...|...|++++|++++++..+.
T Consensus 610 -i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--- 678 (1060)
T PLN03218 610 -IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ--- 678 (1060)
T ss_pred -CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 1223467888999999999999999999987653 1 1233 456888889999999999999999987653
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|. .....+|..|...|...|++++|++.|++.... | -.|. ..+++.|...| ...|++++|+.+
T Consensus 679 --G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy------~k~G~~eeAlel 741 (1060)
T PLN03218 679 --GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-LRPT-VSTMNALITAL------CEGNQLPKALEV 741 (1060)
T ss_pred --CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHH------HHCCCHHHHHHH
Confidence 11 223457888999999999999999998876432 1 1222 34466666666 788999999998
Q ss_pred HHHHHHHHHHh--hChHHHH---HHHHHHHhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILK--AHPDLIH---AFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~--~~p~~~~---a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
+. ++.. -.|+... .+..++..|++++|..++.+.++
T Consensus 742 f~-----eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 742 LS-----EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HH-----HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 3332 2344322 22222378899999998888876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-06 Score=103.68 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=201.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
+...+.+-...|..++-..++++|+..+ |..-..+...+..+...|+...|...+.+|++. +|.
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pn 616 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPN 616 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCC
Confidence 4444555556788888888888888874 223334556677888889999999999999876 344
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.-..+..--.+.+...+++.|..+|.+|... ..+...|+.-+.+...+++.++|+++++++|+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------ 681 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF------ 681 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------
Confidence 4455555556778889999999999998863 2245667888888899999999999999999876
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
|.....|..+|+++.++++.+.|...|...+..+ |..+ -....|+.+- ...|+.-.|...+.
T Consensus 682 --p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~i---pLWllLakle------Ek~~~~~rAR~ild-- 743 (913)
T KOG0495|consen 682 --PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-----PNSI---PLWLLLAKLE------EKDGQLVRARSILD-- 743 (913)
T ss_pred --CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-----CCCc---hHHHHHHHHH------HHhcchhhHHHHHH--
Confidence 6677789999999999999999998887766542 2222 2233344443 66778888888887
Q ss_pred HHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH----------HhhcCCCCccccchHHHHHHHHHHHHHHH
Q 000589 1241 KAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN----------AALLGETLPRGRGFDERAARAAAEVRKKA 1306 (1403)
Q Consensus 1241 kALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~----------~~~~G~~~p~~~~~~era~~a~~e~r~l~ 1306 (1403)
...-.+|.....+...- +.|+.++|..++.+||+ .+..-+.+|..+.-..-|.+-.+.-.+..
T Consensus 744 ---rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 744 ---RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred ---HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 33445555444333332 78999999999999998 33444455544432211222222223455
Q ss_pred HHhhHHHhhCCCchhhhHHHHHHHHHHhcCCC
Q 000589 1307 VAKGLLIRPHGLPAQALPPLTQLLNIINSSGA 1338 (1403)
Q Consensus 1307 ~a~G~~~~~~g~~~eA~~~l~qaL~i~~s~g~ 1338 (1403)
.+-+.++-...+++.|.+.|.+++.+....|.
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 55577788889999999999999988765443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=113.22 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=159.0
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
..+....++..+...+...+++++|+.++..+++. +|.....|+.+|.+|++.+++.+|... .++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 34455777888999999999999999999988887 788889999999999999998888776 55554321
Q ss_pred h------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1073 C------------LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1073 ~------------lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
. .+ +.+..-.+++.||.||-.+|++++|...|++++.+ +|..+.+++++|..|... ++
T Consensus 96 ~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 96 NLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 1 11 23344468899999999999999999999999975 366778899999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR 1220 (1403)
Q Consensus 1141 deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r 1220 (1403)
++|+.++.+|+..+-.. .........|..+ +....-+++.=....++... ..| .......+.-|-..|
T Consensus 166 ~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~----~~~--~~~~~~~~~~l~~~y-- 233 (906)
T PRK14720 166 EKAITYLKKAIYRFIKK--KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLG----HRE--FTRLVGLLEDLYEPY-- 233 (906)
T ss_pred HHHHHHHHHHHHHHHhh--hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHh----hhc--cchhHHHHHHHHHHH--
Confidence 99999999999864321 0111111112111 11122222222222222211 111 223333334444444
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHHHHHHHHHhh
Q 000589 1221 ELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1221 ~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
...+++++++.++. .++...|....+...|+ -.+.|.. ...+++.++...
T Consensus 234 ----~~~~~~~~~i~iLK-----~iL~~~~~n~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 234 ----KALEDWDEVIYILK-----KILEHDNKNNKAREELIRFYKEKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred ----hhhhhhhHHHHHHH-----HHHhcCCcchhhHHHHHHHHHHHccC-cchHHHHHHHhc
Confidence 88899999999998 44444444444555555 2233433 455555555333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=96.61 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=103.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1053 AGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1053 ~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
.++.++++..+++++.. +|+....+..||.+|...|++++|+..|++|+.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778999999999887 4777889999999999999999999999999986 3556677899998
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1133 MY-QDIGK--MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1133 iy-~~~g~--~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
++ ...|+ +++|+.++++++++. |....++++||.++...|++++|+.++++++++
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 75 67787 599999999999864 556678999999999999999999999999886
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=95.84 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
......+..++.+|.++...|++++|+.+|.+++.+. ++++..+.++.++|.+|..+|++++|+.++++|+.+.
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~- 102 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN- 102 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3344568889999999999999999999999999883 3345567899999999999999999999999999872
Q ss_pred HhcCCCChhHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYH-------GLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~-------~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
|.....+.++|.++. .+|+++.|+.++.+++..++..++.+++..
T Consensus 103 -------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 103 -------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 333444555555555 999999999999999999998888776544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=115.43 Aligned_cols=233 Identities=14% Similarity=0.035 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------------------------------HHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH-------------------------------REVANCCRY 1045 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~-------------------------------p~~a~a~~~ 1045 (1403)
+...|..+...|...|++++|+.+|.+.+..- ..++. .....+++.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 34567778888889999999999998876421 00000 001234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
|...|.+.|++++|...|++.. .....+|+.|...|...|++++|+.+|++.... | -.|+ ..
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~ 326 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QF 326 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HH
Confidence 7788888999999988887541 123457888999999999999999999887542 1 1232 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~ 1205 (1403)
+|..+...|...|++++|.+.+..+++.. ......++..|...|.+.|++++|...|++..+ +
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~--- 389 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K--- 389 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C---
Confidence 67888888888999999988888776532 112334667788888888888888887776432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHH---HHhCChHHHHHHHHHHHH
Q 000589 1206 RTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAV---AAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1206 ~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~L---a~~G~~~eA~~~~ekAL~ 1277 (1403)
...+++.|...| ...|+.++|+.+++ +..+ ..-.|+.......+ +..|..++|..+|+...+
T Consensus 390 -d~~t~n~lI~~y------~~~G~~~~A~~lf~--~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 390 -NLISWNALIAGY------GNHGRGTKAVEMFE--RMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred -CeeeHHHHHHHH------HHcCCHHHHHHHHH--HHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 123455555555 67788888888877 2221 12344433322222 267788888888877765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-06 Score=101.05 Aligned_cols=245 Identities=17% Similarity=0.096 Sum_probs=177.6
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
+..+...++.++..|-.+++.+.|.++.++++++- ..+.+.++..||.++...+++.+|+.....++.-...-
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 34445778889999999999999999999999982 22456789999999999999999999999988765321
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--------------------------------------
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS-------------------------------------- 1115 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~-------------------------------------- 1115 (1403)
+ ..+..-..+....++.++|+..+...+.+|+..
T Consensus 547 ~--------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 H--------VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred h--------hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 1 111111222223455555555555555544411
Q ss_pred ---------------------cCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1116 ---------------------SGPDHPD--VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1116 ---------------------~g~d~p~--~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
.+++++. ....|...|..+...+..++|..++.+|-.+. +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 1122222 22345567788888899999999999998876 6778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH--HHHHHHHHHHHhhCh
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN--AASTQKAIDILKAHP 1250 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~--~l~~qkALei~~~~p 1250 (1403)
|.++...|++.+|.+.|..|+.+ .|+|.. +...+|.++ ...|+..-|.. ++. +.++..|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~---s~~Ala~~l------le~G~~~la~~~~~L~-----dalr~dp 751 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALAL-----DPDHVP---SMTALAELL------LELGSPRLAEKRSLLS-----DALRLDP 751 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcH---HHHHHHHHH------HHhCCcchHHHHHHHH-----HHHhhCC
Confidence 99999999999999999999875 455554 455667776 56666665555 676 5555667
Q ss_pred HHHHHHHHHH----HhCChHHHHHHHHHHHHHhh
Q 000589 1251 DLIHAFQAVA----AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1251 ~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
....+++.|| .+|+.++|.++|+-|++...
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7777888888 88999999999999998543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-07 Score=99.14 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.++.++++..+++++.. +|.....+..||.+|..+|++++|+..|++|+.+ .|+....+.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888889888887 5677889999999999999999999999999998 3667788999999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1091 FY-HGLNQ--TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1091 ~~-~~~G~--~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
++ ...|+ +++|..++++++.+ +|....+++++|.++...|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999975 46667789999999999999999999999999875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-05 Score=94.84 Aligned_cols=294 Identities=17% Similarity=0.065 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHH
Q 000589 995 CSEAKNLVEMGKVQ-LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA----GDMAGAIMQQHKELII 1069 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~-~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~----G~~~eAi~~~~kAL~i 1069 (1403)
.++...++..++++ ...+.++++++|.++++..+... .......+|..+|.+|..+ ....+=..+.++++..
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 44445555555555 45688999999999999976433 2334567788888777543 4556666777777777
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.++....++.+ ..+.+++|.-|..+++.+.|+.+.++++.+. + .+.+.+|..||.++...+++.+|+.....
T Consensus 467 le~av~~d~~d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~---~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 467 LEEAVQFDPTD-PLVIFYLALQYAEQRQLTSALDYAREALALN----R---GDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHhcCCCC-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----C---CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 77765444332 2677889999999999999999999999862 1 23456788899999999999999988877
Q ss_pred HHHHHHHHhC----------------------------------------------------------------------
Q 000589 1150 ALKKNERLLG---------------------------------------------------------------------- 1159 (1403)
Q Consensus 1150 AL~l~~~~~G---------------------------------------------------------------------- 1159 (1403)
+++-....++
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 7765433100
Q ss_pred -----------------------CCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1160 -----------------------EEHIQ--TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1160 -----------------------~~~~~--~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
++++. ....+...|..+...++.++|..++.+|..++ +.....++..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 00000 01122234444555555555555555555442 2333333434
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHH--HHHHHHHHhhcCCCCccccch
Q 000589 1215 KTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGA--SANNSLNAALLGETLPRGRGF 1291 (1403)
Q Consensus 1215 a~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~--~~ekAL~~~~~G~~~p~~~~~ 1291 (1403)
|.++ ..+|++.+|.+.|. .|+.+.++|+....++..+- ..|+..-|.. ++..|++.. +.++
T Consensus 691 G~~~------~~~~~~~EA~~af~--~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d---p~n~----- 754 (799)
T KOG4162|consen 691 GLLL------EVKGQLEEAKEAFL--VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD---PLNH----- 754 (799)
T ss_pred hHHH------HHHHhhHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC---CCCH-----
Confidence 4433 66777777777666 55555555555444444433 4454433333 555555421 1111
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1292 DERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1292 ~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
+.....|..+..+|+..+|..+|+-++++-.+
T Consensus 755 ------------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 755 ------------EAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ------------HHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 23344588899999999999999999999776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-06 Score=110.70 Aligned_cols=265 Identities=13% Similarity=0.057 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|+.+|.+.... | ..|+ ..+|..+...|...|++++|...+..+++. |.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g~ 356 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GF 356 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----CC
Confidence 4566777888888889999998888876543 1 1222 346788888888889999888888877654 21
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+....+++.|...|.+.|++++|...|++... + ...+|+.|...|...|+.++|+++|++..+.
T Consensus 357 --~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--- 420 (697)
T PLN03081 357 --PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE--- 420 (697)
T ss_pred --CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 22345677888888889999999888877532 2 2346888888899999999999999886643
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|- .|+ ..++..+..++...|+.++|.++|+...+.. |- .| ....+..+..++ ...|++++|.+.
T Consensus 421 --g~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p-~~~~y~~li~~l------~r~G~~~eA~~~ 484 (697)
T PLN03081 421 --GV-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-KP-RAMHYACMIELL------GREGLLDEAYAM 484 (697)
T ss_pred --CC-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CC-CccchHhHHHHH------HhcCCHHHHHHH
Confidence 11 122 3457777788888899999988888765421 11 11 123456666666 778888888877
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ +. ...|+.. ++..|. ..|+.+.|...+++.++. .+.+..+. ......
T Consensus 485 ~~-----~~-~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y-----------------~~L~~~ 537 (697)
T PLN03081 485 IR-----RA-PFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNY-----------------VVLLNL 537 (697)
T ss_pred HH-----HC-CCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcch-----------------HHHHHH
Confidence 65 22 2233322 233332 778888888888776542 22221111 122336
Q ss_pred HhhCCCchhhhHHHHHHHHH
Q 000589 1313 IRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i 1332 (1403)
|...|++++|.+.+++..+.
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 77889999998888876543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=103.16 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....|+.+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|+.-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4456888999999999999999999999999998 6777889999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMD 1141 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~d 1141 (1403)
+|....+|..||.+|+.+|++.+|++.|++||++ +|+......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6889999999999999999999999999999986 3444445555555544444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-06 Score=91.97 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++..|..++..|+|.+|+..|.+.+..+ +.++....+...+|.+++..|++++|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 47789999999999999999999999998874 5577888999999999999999999999999999875 6
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhhcCCCCHHH--------------HHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLN-----------QTELALRHMSRALLLLSLSSGPDHPDV--------------AATFINVA 1131 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G-----------~~~eAl~~l~rAL~l~~~~~g~d~p~~--------------a~~~~nLA 1131 (1403)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ ++++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999876543 2346777777777654 222322 22335678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
..|...|.|..|+..++.+++.. ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999999876 566778889999999999999988554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-07 Score=90.33 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000589 1020 LFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTE 1099 (1403)
Q Consensus 1020 ~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~ 1099 (1403)
.|++++.. +|.....+..+|..+...|++++|+..+++++.+ .|....++.++|.++..+|+++
T Consensus 5 ~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHH
Confidence 45566654 5667788999999999999999999999999886 3556788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1100 LALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1100 eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|+.++++++.+ +|.....++++|.+|...|++++|+.+|++++++.
T Consensus 69 ~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999875 35566778999999999999999999999999875
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=90.29 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~ 1116 (1403)
++.....+.+|..++..|++++|...|+-.+.+ .|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 678888999999999999999999999998887 5788899999999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1117 g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|+....+.++|.++...|+.+.|+..|+.|+.++
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 24555679999999999999999999999999988
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=100.49 Aligned_cols=296 Identities=14% Similarity=0.036 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
.+.++....++...|++++|++++.+.... -.+....+-..|.++..+|++++|...|+..|..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 345666788899999999999999775544 3456778889999999999999999999999887
Q ss_pred ChhHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhh-------c----CCC-------------CHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLN-----QTELALRHMSRALLLLSLS-------S----GPD-------------HPDVAATFI 1128 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G-----~~~eAl~~l~rAL~l~~~~-------~----g~d-------------~p~~a~~~~ 1128 (1403)
+|+....|..|..+..... +.+.-..+|.+....+... + |.. ...+..++.
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3566666666666663322 3444445554433221110 0 000 001122344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hC------CCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKKNERL--LG------EEHI-QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l~~~~--~G------~~~~-~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
+|-.+|....+..--..++...+...... +. .+.| ....+++.||..|...|++++|+++.++|++.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 44444443222222222222211111100 00 1122 23567899999999999999999999999985
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCChHHHHHHHHHHHHHh
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAA 1279 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La~~G~~~eA~~~~ekAL~~~ 1279 (1403)
.|...+.+..-|.++ ...|++.+|...++..+.++.....-....+.+.| +.|+.++|...+..-.+..
T Consensus 224 ----tPt~~ely~~Karil------Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 224 ----TPTLVELYMTKARIL------KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ----CCCcHHHHHHHHHHH------HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHhhcCCC
Confidence 466677778888777 99999999999888333333333322322222222 7799999988776654421
Q ss_pred hcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1280 LLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1280 ~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
. .|. .....+.. -=.....|..+.++|++..|+..|..+...+..
T Consensus 293 ~----~~~--~~L~~mQc-----~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 293 V----DPL--SNLNDMQC-----MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred C----Ccc--cCHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 111 10000111 113334477888889999999988888888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=90.94 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=101.5
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
..+..+.+++++|.++...|++++|+.+|++++.+. ++++....++.++|.++...|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 456778889999999999999999999999999863 3344456789999999999999999999999999864
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCM-------GAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKT 1216 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~-------Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~ 1216 (1403)
+.....+..+|.+|... ++++.|+.++++|++++.+.+..++..+.++..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 33445566677777665 5578888888889888888877666666666666653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=90.54 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+..++..|..++..|+|++|+..|++.+..+ +..+....+...||.+|+..+++++|+.++++.+...
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----- 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----- 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----
Confidence 357778899999999999999999999998863 5567778889999999999999999999999999985
Q ss_pred CCChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHhhcCCCCHH--------------H
Q 000589 1076 LDHPDTAHSYGNMALFYHGLN---------------Q---TELALRHMSRALLLLSLSSGPDHPD--------------V 1123 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G---------------~---~~eAl~~l~rAL~l~~~~~g~d~p~--------------~ 1123 (1403)
++||....+++.+|.++...+ + ..+|+..|++.+..+ |+.+. .
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHH
Confidence 778999999999998865544 2 245667777766543 22222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
+.--..+|..|.+.|.|..|+.-++.+++-+ ++.+....+++.++.+|..+|..++|..+.+
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2233467888999999999999999998865 5667888899999999999999999987654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-05 Score=96.79 Aligned_cols=236 Identities=10% Similarity=0.053 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..++..+.-.+..++|..++...+..+.. +|+....+...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 45666677777888999999999888874 4555667888999999999999999999999874 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
+....+|.-+|.++....+|++|+++|+.|+.+ .++...++..|+....++++|+.....-.+-+++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 444567888999999999999999999999975 35567789999999999999998888877777765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+..-..|..+|..+...|++..|...+++-...... ++...... .....+ .+.......|.+++|.+.+.
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~--~~s~~~~e---~se~~L-y~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT--SPSKEDYE---HSELLL-YQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCHHHHH---HHHHHH-HHHHHHHHcccHHHHHHHHH
Confidence 445567888999999999999999888776554331 11111111 111111 12233356666666666554
Q ss_pred HHHHHHHHh---hChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1239 TQKAIDILK---AHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1239 ~qkALei~~---~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
..-+ +.-........+. ..+++++|...|...+.
T Consensus 210 -----~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 210 -----DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred -----hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 1111 1111112222232 66888888888877765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=88.17 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..-..++.+|..++..|++++|..+|+-...+ +|.....+++||.++..+|+|++|+..|.+|+.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------ 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------ 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34667888999999999999999999998877 7888999999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.|+....+.++|.|++..|+.+.|.+.|+.|+..+
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35566789999999999999999999999999886
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=93.84 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.|+...+ .+++..++..|+-+.+..+..++... ++.....+.-+|...+..|+|.+|+..++++..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555566 88999999999999999988886654 3333444455899999999999999999999865
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.|..+.+++.+|.+|.+.|++++|..-|.+|+++. +....++.|||..|...|+++.|..++..++..
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 46678889999999999999999999999999986 344567899999999999999999999988752
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+..+. .+..+|+.+. ..+|++++|..+..
T Consensus 198 -----~~ad~---~v~~NLAl~~------~~~g~~~~A~~i~~ 226 (257)
T COG5010 198 -----PAADS---RVRQNLALVV------GLQGDFREAEDIAV 226 (257)
T ss_pred -----CCCch---HHHHHHHHHH------hhcCChHHHHhhcc
Confidence 23333 3456777776 88999999987655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=94.37 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
..++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..++++..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 66778888888888888777775543 3333344445888899999999999999999887 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
..+|+.+|.+|-+.|++++|...|.+++++. +....+++|||+.|.-.|+++.|..++..+...-
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------- 198 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------- 198 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------
Confidence 7889999999999999999999999999874 3344568899999999999999999998886532
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
.....+..+|+.+...+|++++|.....
T Consensus 199 -~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 199 -AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred -CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 3345678899999999999998876544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=88.19 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
+|.....+..+|.++...|++++|+.++++++.+ +|.....+.++|.++..+|++++|+.+|++++.+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4666788999999999999999999999998875 35556779999999999999999999999998853
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677899999999999999999999999885
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-06 Score=96.28 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHh
Q 000589 997 EAKNLVEMGKVQLAEG-LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM--AGAIMQQHKELIINERC 1073 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G-~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~--~eAi~~~~kAL~i~er~ 1073 (1403)
...++...|.++...| ++++++.++.+++.. +|....++++.+.++..+|+. ++++.++.+++.+
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---- 137 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---- 137 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----
Confidence 3556777888888888 689999999999987 566777899999999888874 7788999898876
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc---CCH----HHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI---GKM----DTALRY 1146 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~---g~~----deAl~~ 1146 (1403)
+|....++.+.+.++...|+|++|+.++.+++++ ++....+|++.+.++... |.+ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5778889999999999999999999999999976 355567888888888766 333 468888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1147 LQEALKKNERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1147 lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~----~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
..+++.+. |....+++.++.++.. .++..+|+..+.+++. ..+....++..|+.+|.
T Consensus 206 ~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 206 TIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHH
Confidence 88888764 5566788888988887 3455667777766554 24455667788888873
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-06 Score=89.54 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 991 SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 991 ~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
..+....+..++.+|..+...|++++|+.+|++++.+. ++.+..+.++..+|.++..+|++++|+.++++++.+
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 101 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL- 101 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34456678899999999999999999999999999873 233445778999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhcC
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQ-------TELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~-------~~eAl~~l~rAL~l~~~~~g 1117 (1403)
+|.....+.++|.++...|+ ++.|+.++.+|+..+.....
T Consensus 102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 35556778888888887665 55555555566555554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-05 Score=92.13 Aligned_cols=273 Identities=10% Similarity=0.001 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
-..++.-+..+...+.++-|...|..+|+.+ |.--..+...+..--..|..++-..++++|+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------- 580 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------- 580 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------
Confidence 5677788889999999999999999998874 3334456666677777899999999999999874
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|..-..+...+.-++..|+...|...+.+|++. +|..-.++..--.+.....+++.|..+|.+|....
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~s--- 648 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--- 648 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC---
Confidence 333345566778888999999999999999875 35555566666677788999999999999987642
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
.+..+|+.-+.+...+++.++|+.+++++++.| |..-..+..+|+++ ..+++.+.|...|
T Consensus 649 ------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~------e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 649 ------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIE------EQMENIEMAREAY 708 (913)
T ss_pred ------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 456778888899999999999999999999875 34445566777777 8899999999888
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhC
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPH 1316 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~ 1316 (1403)
. ..+...+..+-+.-.+..|- ..|+.-.|...+.++.- .+|.....+ +...+ ...+.
T Consensus 709 ~--~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl------kNPk~~~lw------------le~Ir--~ElR~ 766 (913)
T KOG0495|consen 709 L--QGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL------KNPKNALLW------------LESIR--MELRA 766 (913)
T ss_pred H--hccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh------cCCCcchhH------------HHHHH--HHHHc
Confidence 7 44444444444434444443 67889999999988864 344444422 22233 45677
Q ss_pred CCchhhhHHHHHHHHHHhcCCCC
Q 000589 1317 GLPAQALPPLTQLLNIINSSGAT 1339 (1403)
Q Consensus 1317 g~~~eA~~~l~qaL~i~~s~g~~ 1339 (1403)
|..++|.....+||+-+.+.|..
T Consensus 767 gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchh
Confidence 99999999999999998876543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=101.38 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=171.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
.+...|+..|-+++.+ ++..+.++..||.+|....+...|..+|++|.++ ++..+.+.-.++..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 4478899999999887 6788999999999999999999999999999887 35566777789999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
|....+++.|.....++-+.... ......|..+|..|.+.+++..|+..|+.|++.. |....++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHH
Confidence 99999999999885554433211 1223445668999999999999999999999854 778889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----
Q 000589 1172 LAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---- 1247 (1403)
Q Consensus 1172 LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---- 1247 (1403)
||.+|...|++..|++.|.+|..+ +|...-+.+..+.+. ...|.|.+|+..+. ..+....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~e------cd~GkYkeald~l~--~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVME------CDNGKYKEALDALG--LIIYAFSLERT 665 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHH------HHhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999999999999999775 455555666666665 88999999999888 3333222
Q ss_pred hChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1248 AHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1248 ~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
...+.+.++.+++ .+|=+.+|..+++++++
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2334555555555 56777778888888777
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=84.63 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+....+-|..-+..|+|.+|+.+..++-+. ++.-.-+|..-|..-.++|+++.|-.|+.++-+..
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 34666777888889999999999999986554 33445567777888899999999999999987652
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK-- 1153 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l-- 1153 (1403)
..++...+..++.++...|++..|..-..++++. ++.||.. +.-...+|...|+|.+...++.+.-+.
T Consensus 149 --~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 149 --GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred --CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 1235567788999999999999999999998875 3445544 556678899999999888877543221
Q ss_pred -----------------HHHHhCCC-cH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1154 -----------------NERLLGEE-HI--------------QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1154 -----------------~~~~~G~~-~~--------------~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
..+...++ .. ....+...++.-+...|+.++|.+..+++++-.
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----- 293 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ----- 293 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----
Confidence 00000000 00 112344567778889999999999999887631
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhh
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
.++. |..++.+ ..-++...-+...+ +.+.-.++.|....++..|+ ..+.+.+|..+++.|+....
T Consensus 294 -~D~~-------L~~~~~~----l~~~d~~~l~k~~e--~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 294 -WDPR-------LCRLIPR----LRPGDPEPLIKAAE--KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred -cChh-------HHHHHhh----cCCCCchHHHHHHH--HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 2222 2222211 23345555454444 55555556676666666666 88999999999999987332
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1281 LGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1281 ~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.. .-....+..+..+|+..+|.+.++.+|.+..+
T Consensus 360 s~---------------------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 360 SA---------------------SDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred Ch---------------------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 10 11222344678889999999999999977665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-05 Score=93.56 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=173.5
Q ss_pred HHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 000589 981 ILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060 (1403)
Q Consensus 981 I~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi 1060 (1403)
+..+.++++. .+.+ ++.+-..|..+...|+.++|..+...++.. ++...-|+.-+|.++....+|++|+
T Consensus 27 LK~~~~iL~k-~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 27 LKLIKQILKK-FPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHHh-CCcc--chhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHH
Confidence 3344455552 2333 555666899999999999999999998874 3445568999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1061 MQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1061 ~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
.+|+.|+.+ .++..+.+..|+.+...+++++.....-.+.+++ .|..-..|..+|..+...|++
T Consensus 96 Kcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 96 KCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHH
Confidence 999999998 4677889999999999999999988887777765 356666788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR 1220 (1403)
Q Consensus 1141 deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r 1220 (1403)
..|...++.-.................+......+....|.+++|++++..--. .....++....+
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--------------~i~Dkla~~e~k 225 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--------------QIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--------------HHHHHHHHhhhH
Confidence 999999888776654211112223344455556677778887777776654321 122344444455
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1221 ELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1221 ~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+..+..++++++|...+. .++..+|+....+..+-
T Consensus 226 a~l~~kl~~lEeA~~~y~-----~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYR-----RLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHhhHHhHHHHHH-----HHHhhCchhHHHHHHHH
Confidence 566689999999999998 77777787776665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=83.38 Aligned_cols=136 Identities=23% Similarity=0.121 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...+.........++...+...+.+.+.- .+..+....+...+|.+++..|++++|+..|++++... .
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 4556666666677889999888877776665 34556677889999999999999999999999998852 3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
+......+...||.++...|+|++|+..++.. .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44445667889999999999999999998662 2334556678889999999999999999999885
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=96.52 Aligned_cols=167 Identities=21% Similarity=0.259 Sum_probs=141.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
.+.|...||.-.=-.+|++|.++...+ .+.+.+.+|...+..++|.+|..+++.++++ .|.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 567777888888888888888886543 4557778888888899999999999999998 4778889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
|+++|.+..+.++++.|.++|.+++.+ .|+.+.+|+|++..|...++-.+|...+++|++... .
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--------~ 585 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--------Q 585 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--------C
Confidence 999999999999999999999999965 477788999999999999999999999999998651 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGE 1202 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~ 1202 (1403)
....+.|.-.+..+.|.+++|+..|.+.+.+.+....+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 23456777788899999999999999999887665433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=102.25 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+...|..++..|+|++|+.+|.+|+.+ .|....++.++|.+|..+|++++|+..+++|+.+ .
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------D 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34677899999999999999999999997 4556788999999999999999999999999998 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666788999999999999999999999999986
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=96.03 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
..+..+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|.|.+|.++|.|+.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 45566677788889999999999999999998 4777889999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|....+|..||.+|..+|++.+|++.|++||++.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 68999999999999999999999999999999975
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-06 Score=82.72 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..++.+|..+..+|++++|+..|.+++.. .++++....+++.+|.+++..|++++|+.++++++... ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CC
Confidence 457889999999999999999999999876 24455567889999999999999999999999998763 44
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
++....++..+|.++..+|++++|+.++.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5556778999999999999999999999999976
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.4e-05 Score=84.35 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCC
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~ 1118 (1403)
....++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|++++|+..+++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678899999999999999999999998875 5677888999999999999999999999999999865 6
Q ss_pred CCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHH
Q 000589 1119 DHPDVAATFINVAMMYQDIG-----------KMDTALRYLQEALKKNERLLGEEHI--------------QTAVCYHALA 1173 (1403)
Q Consensus 1119 d~p~~a~~~~nLA~iy~~~g-----------~~deAl~~lekAL~l~~~~~G~~~~--------------~~a~~~~~LA 1173 (1403)
+|+....+++.+|.++..+. ...+|+..|+..++.. |+++ ..+.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999876543 3346777777766554 2222 1233345678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
..|...|.+..|+..++.+++-+ ++.+...+++..|...| ...|....|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y------~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAY------YKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHH------HHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH------HHhCChHHH
Confidence 99999999999999999988864 45667777888888777 667776643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-06 Score=82.11 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
..++.+|..+...|++++|+.+|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 568899999999999999999999998752 4445557789999999999999999999999999753 455
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5567789999999999999999999999999864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-05 Score=102.33 Aligned_cols=230 Identities=13% Similarity=0.036 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+..+...|...|++++|..+|.+... + ...+|+.+...|.+.|++++|+.+|++....- ..++
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd 388 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-------K----DAVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPD 388 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCC
Confidence 44555566666666666666666655311 1 12345566666666666666666666543210 0011
Q ss_pred -------------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 000589 1078 -------------------------------HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT 1126 (1403)
Q Consensus 1078 -------------------------------~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~ 1126 (1403)
......+++.|...|.+.|++++|.+.|++... ++ ..+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~d-~vs 457 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------KD-VIS 457 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------CC-eee
Confidence 011233455566666666666666666655321 11 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHH-------------------------------HHHHHHHHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA-------------------------------VCYHALAIA 1175 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a-------------------------------~~~~~LA~~ 1175 (1403)
|+.+...|...|++++|+.+|++.+.. ..++..... ..+..|-..
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 666666777777777777777766431 111111000 011233355
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHH-
Q 000589 1176 FNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIH- 1254 (1403)
Q Consensus 1176 y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~- 1254 (1403)
|.+.|++++|...|+.. . ....+++.+...| ...|+.++|+.+++ +..+ ....|+...
T Consensus 534 y~k~G~~~~A~~~f~~~---------~---~d~~s~n~lI~~~------~~~G~~~~A~~lf~--~M~~-~g~~Pd~~T~ 592 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---------E---KDVVSWNILLTGY------VAHGKGSMAVELFN--RMVE-SGVNPDEVTF 592 (857)
T ss_pred HHHcCCHHHHHHHHHhc---------C---CChhhHHHHHHHH------HHcCCHHHHHHHHH--HHHH-cCCCCCcccH
Confidence 55666666665555432 0 1123444454455 67788888888887 3221 112343332
Q ss_pred --HHHHHHHhCChHHHHHHHHHHHH
Q 000589 1255 --AFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1255 --a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
.+...+..|..++|..+|+...+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHH
Confidence 22222377888888888887764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-05 Score=80.82 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
..++...+...+++.+.- .++++....+...+|.+++..|++++|...|++++... ++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 578888887777766654 24455667888999999999999999999999998742 34455567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.++...|++++|+..++.. .........+..+|.+|...|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999652 1234556678899999999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=98.98 Aligned_cols=244 Identities=12% Similarity=0.023 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
..+++.|...|.+.|++++|...|++... + ...+|+.+...|...|++++|+.+|++.+.- ..++
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd 488 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPN 488 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCC
Confidence 34567777888888888888888775321 1 2346888889999999999999999998631 1122
Q ss_pred CHHHH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q 000589 1120 HPDVA-------------------------------ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC 1168 (1403)
Q Consensus 1120 ~p~~a-------------------------------~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~ 1168 (1403)
..... ..++.|-.+|.+.|++++|...|++. .....+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~~s 556 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EKDVVS 556 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CCChhh
Confidence 11111 01123346677777777777777653 113457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA 1248 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~ 1248 (1403)
|..|...|...|+.++|+++|++..+. -+.++... +..+-..+ ...|..++|..++. +..+....
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~------~~~g~v~ea~~~f~--~M~~~~gi 621 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCAC------SRSGMVTQGLEYFH--SMEEKYSI 621 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHH------hhcChHHHHHHHHH--HHHHHhCC
Confidence 888999999999999999999987642 22233222 22232334 67799999999998 33333333
Q ss_pred ChHH--HHH-HHHHHHhCChHHHHHHHHHHHHHhhcCCCCccc------------cchHHHHHHHHHHHHHH-------H
Q 000589 1249 HPDL--IHA-FQAVAAAGGSGNSGASANNSLNAALLGETLPRG------------RGFDERAARAAAEVRKK-------A 1306 (1403)
Q Consensus 1249 ~p~~--~~a-~~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~~------------~~~~era~~a~~e~r~l-------~ 1306 (1403)
.|+. ... ...+++.|++++|...+++.- ..|.. ....+.++.+.....++ .
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMP-------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 4442 222 233338899999999988741 11111 11112222221111111 1
Q ss_pred HHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1307 VAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1307 ~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
...+.+|...|++++|....+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 12256788899999998777665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-05 Score=91.29 Aligned_cols=204 Identities=18% Similarity=0.100 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.++.--..+...|+|++|+....+.+.+ +++.+ .+.+.--.++.+.+.|++|+...++-...
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~-----~pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~---------- 75 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI-----VPDDE---DAIRCKVVALIQLDKYEDALKLIKKNGAL---------- 75 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc-----CCCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchh----------
Confidence 3444444556677788877777776665 23333 33333445566777777777443332111
Q ss_pred hHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Q 000589 1080 DTAHSY-GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN---- 1154 (1403)
Q Consensus 1080 ~~~~a~-~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~---- 1154 (1403)
.....+ +.-|.|++++++.++|+..+. .+ ..+ ...++..-|.+++++|+|++|+..|+..++-.
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHh-cc-------ccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 111122 566778888888888887776 11 111 22345556777888888888888877653210
Q ss_pred -------------------HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-------HH
Q 000589 1155 -------------------ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR-------TK 1208 (1403)
Q Consensus 1155 -------------------~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~-------t~ 1208 (1403)
.+........+-..++|.|.++...|+|.+|++.+++|+++.++.+..++.. ..
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 0011111223556789999999999999999999999999999887654332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+...|+.++ ..+|+..+|..+|.
T Consensus 225 ~IrvQlayVl------Q~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 225 PIRVQLAYVL------QLQGQTAEASSIYV 248 (652)
T ss_pred HHHHHHHHHH------HHhcchHHHHHHHH
Confidence 3344455555 88999999999887
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=78.86 Aligned_cols=223 Identities=12% Similarity=-0.000 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+..|...+..|....+|++|-..+.+|...++..-. -...+.+|-..|.+...+..+.|+..+|++|..++.+..
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G- 105 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG- 105 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-
Confidence 34566677788888999999999999999988876432 234578899999999999999999999999999998763
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
+|+++..-..-|--....-++++|+.+|++++.+.+.- .........+...+.+|....+|++|-..+.+-..+..
T Consensus 106 --spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 --SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred --CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 45555444455555667889999999999999987652 22334456778889999999999999998887666654
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN 1235 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~ 1235 (1403)
..-. .+.....+..+-.+|....+|..|...++...++ .+-..++-..++.+|-..| .+|+.++...
T Consensus 182 ~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-------d~gD~E~~~k 248 (308)
T KOG1585|consen 182 KCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-------DEGDIEEIKK 248 (308)
T ss_pred HHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-------ccCCHHHHHH
Confidence 4321 1223334555556677778999999999987765 2223444455555655554 5677776655
Q ss_pred HHH
Q 000589 1236 AAS 1238 (1403)
Q Consensus 1236 ~l~ 1238 (1403)
.+.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=89.13 Aligned_cols=149 Identities=18% Similarity=0.150 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hcCCCChh
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER---CLGLDHPD 1080 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er---~lg~d~p~ 1080 (1403)
+-.+|..+|.+++|.++.+. .+....-..|++.|..+...++.+.|++||+++-...-. .+.. .|.
T Consensus 832 lNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~p~ 900 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-YPK 900 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-ChH
Confidence 44556666666666554432 122234568999999999999999999999986322111 1111 111
Q ss_pred HH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1081 TA----------HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1081 ~~----------~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.+ ..|..-|.++...|+.+.|+.+|..|-.. +.+-.+..-+|+.++|-+..++.
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------------fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----------------FSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------------hhheeeEeeccCchHHHHHHHhc
Confidence 11 23445577777788888888887777543 22333334444444444433322
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
- ...+.+.||+.|...|++.+|+.+|.+|
T Consensus 965 g-------------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 965 G-------------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred c-------------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 1123455666666666666666666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.3e-05 Score=84.37 Aligned_cols=173 Identities=15% Similarity=0.088 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...++..|..++..|+|++|+..|++++... +.++....+..+||.+|+..+++++|+.++++.+... ++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cC
Confidence 4557788889999999999999999998864 4567777888999999999999999999999999874 78
Q ss_pred CHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHhCCCcH--------------HHHH
Q 000589 1120 HPDVAATFINVAMMYQDIG---------------K---MDTALRYLQEALKKNERLLGEEHI--------------QTAV 1167 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g---------------~---~deAl~~lekAL~l~~~~~G~~~~--------------~~a~ 1167 (1403)
||....+++.+|.++..++ + ..+|+..|++.++.. |++. ..+.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 8999999999998875554 2 245666666666543 2222 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1168 CYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1168 ~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
--..+|..|...|.|..|+.-++.+++-+ ++.+...+++..+...| ...|..++|.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay------~~lg~~~~a~~~~~ 236 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY------RQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH------HHcCChHHHHHHHH
Confidence 34567889999999999999999988754 45677888888888887 78888888876554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.7e-06 Score=99.19 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 456788899999999999999999987 3566778999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+++++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66789999999999999999999999999875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=78.74 Aligned_cols=102 Identities=26% Similarity=0.256 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+.+.+|.++-.+|+.++|+.+|++++.. |.+.+....++..+|..+..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999874 56667777899999999999999999999999887532 333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
+........++.++...|++++|+.++..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556667788999999999999999887775
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-05 Score=99.32 Aligned_cols=213 Identities=9% Similarity=-0.058 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+...|....++..|...|...+++++|+..++.++.. +|..+..|+.+|.+++..+++.+|... +++.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4557788899999999999999999999999988876 588889999999999999999888776 555443
Q ss_pred Hhhc-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCC
Q 000589 1113 SLSS-----------GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGA 1181 (1403)
Q Consensus 1113 ~~~~-----------g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd 1181 (1403)
.... -.+++..-.+++.||.||..+|++++|...|++++++. +..+.++.++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-h
Confidence 2210 01233444688999999999999999999999999864 66788999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-
Q 000589 1182 FKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA- 1260 (1403)
Q Consensus 1182 ~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La- 1260 (1403)
+++|++++.+|+..+-..- ......-.|...+. ....+++.-..+.+ +.+.... .-.....+.-|-
T Consensus 165 L~KA~~m~~KAV~~~i~~k----q~~~~~e~W~k~~~------~~~~d~d~f~~i~~--ki~~~~~-~~~~~~~~~~l~~ 231 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKK----QYVGIEEIWSKLVH------YNSDDFDFFLRIER--KVLGHRE-FTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHh------cCcccchHHHHHHH--HHHhhhc-cchhHHHHHHHHH
Confidence 9999999999998754321 11111112333222 23333333232222 1111111 111112222221
Q ss_pred ---HhCChHHHHHHHHHHHH
Q 000589 1261 ---AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1261 ---~~G~~~eA~~~~ekAL~ 1277 (1403)
...++++++..++.+|+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHh
Confidence 66889999999999998
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-05 Score=95.60 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=170.5
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000589 984 LQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063 (1403)
Q Consensus 984 l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~ 1063 (1403)
+...++.+.-+...|..+-.+|.+|...-+...|..+|.+|.++ ++..+.+.-.++..|....+++.|....
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33445666666777888888999999988999999999999988 6677888888999999999999999884
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
-.+-+... -......+..+|.+|...+++..|+..|+.|+.. +|....+|..||.+|...|+|..|
T Consensus 550 l~~~qka~------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 550 LRAAQKAP------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHhhhch------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH
Confidence 43332211 0122344556999999999999999999999964 688889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
++.|.+|..+. |......+..|.....+|+|.+|+..+...+..+..... .....++++..++..+
T Consensus 616 lKvF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE~~ir~akd~----- 681 (1238)
T KOG1127|consen 616 LKVFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAESVIRDAKDS----- 681 (1238)
T ss_pred HHhhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH-----
Confidence 99999998765 566677888999999999999999999988876543211 1112333333333333
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
..+|-+.+|..+++ ++++.+.
T Consensus 682 -~~~gf~~kavd~~e--ksie~f~ 702 (1238)
T KOG1127|consen 682 -AITGFQKKAVDFFE--KSIESFI 702 (1238)
T ss_pred -HHHHHhhhhhHHHH--HHHHHHH
Confidence 55566666666666 6655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0007 Score=73.86 Aligned_cols=222 Identities=15% Similarity=0.007 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.++-...+..|..-+..|....+|++|...+.+|+..++.- ..-...+.+|-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555567778888888999999999999999999887753 2223457788899999999999999999999999998
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
... | .|+.+..-..-|--..+.-+.++|+++|++++.+.+. +.........+...+++|.....|++|-..+.+-
T Consensus 102 ~E~-G--spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VEC-G--SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHh-C--CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 775 3 3454444444455556788999999999999999865 2223344566788899999999999999888887
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHH---HhCChHHH
Q 000589 1193 YDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-AHPDLIHAFQAVA---AAGGSGNS 1268 (1403)
Q Consensus 1193 l~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-~~p~~~~a~~~La---~~G~~~eA 1268 (1403)
..+..+.-.-..+. ..+..+-.+| ....+|.+|..+++ ..-.+-. ..++...++.+|- ..|+.++.
T Consensus 177 ~~~~~~~~~y~~~~--k~~va~ilv~------L~~~Dyv~aekc~r--~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 177 GVAADKCDAYNSQC--KAYVAAILVY------LYAHDYVQAEKCYR--DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hhHHHHHhhcccHH--HHHHHHHHHH------hhHHHHHHHHHHhc--chhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 76665542222221 1122222233 45678888888877 3222222 3455566666664 67777765
Q ss_pred HHH
Q 000589 1269 GAS 1271 (1403)
Q Consensus 1269 ~~~ 1271 (1403)
...
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-05 Score=91.43 Aligned_cols=213 Identities=15% Similarity=0.073 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----hcCCCChhHHHHHH-----HHHHHHHHCCCHHHHHHHHH
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER-----CLGLDHPDTAHSYG-----NMALFYHGLNQTELALRHMS 1106 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er-----~lg~d~p~~~~a~~-----nLA~~~~~~G~~~eAl~~l~ 1106 (1403)
|.....-..+|.++...|-..+|+..|++.-..... ..|..+......+. +.+..|..+||...=-.+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 344555667888888888888888877764322110 11211100000000 12344555555555556666
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1107 rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
+|.++.+.. .+.+...+|......++|.+|.++++.++++. +....+|+.+|.++.+.+++..|.
T Consensus 475 kawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 475 KAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHHH
Confidence 666654332 34455666666677899999999999999876 566788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCCh
Q 000589 1187 QHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGS 1265 (1403)
Q Consensus 1187 ~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~ 1265 (1403)
++|..+..+ .|+..++.++++..| ...++..+|...+. +|+..-..|+....-|..++ ..|.+
T Consensus 540 ~aF~rcvtL--------~Pd~~eaWnNls~ay------i~~~~k~ra~~~l~--EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 540 KAFHRCVTL--------EPDNAEAWNNLSTAY------IRLKKKKRAFRKLK--EALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHhhc--------CCCchhhhhhhhHHH------HHHhhhHHHHHHHH--HHhhcCCCCCeeeechhhhhhhcccH
Confidence 999998875 566678899999998 77888889988888 66666656777777777777 88999
Q ss_pred HHHHHHHHHHHHHhh
Q 000589 1266 GNSGASANNSLNAAL 1280 (1403)
Q Consensus 1266 ~eA~~~~ekAL~~~~ 1280 (1403)
++|+..|.+.+....
T Consensus 604 eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00084 Score=81.53 Aligned_cols=246 Identities=15% Similarity=0.099 Sum_probs=163.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
+-++-+..|+..+-+..|.+|+....-..... ....++..+|..|...|+.+.|...+++|+...= ..-.+.+.
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~ 426 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAE 426 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHH
Confidence 34566678889999999999987642211111 2345778899999999999999999999987621 11235678
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----hcCCCCHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSL----SSGPDHPDV------AATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~----~~g~d~p~~------a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.|.+-|.......+++.|++++++|...-.. .+...+|.. ..+|..++......|-++.....|.+.+++
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8899999999999999999999999854221 122233332 345666777777888888888888888887
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHhhcHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN-WMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~-~La~l~~r~~~~~~qg~~~e 1232 (1403)
. ..+..+..|.|..+....-|++|.+.|++.+.+|+ -|...+..+ .|..+.. .......+.
T Consensus 507 r--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~----rygg~klEr 568 (835)
T KOG2047|consen 507 R--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIK----RYGGTKLER 568 (835)
T ss_pred h--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHH----HhcCCCHHH
Confidence 6 34556677889999988899999999998888764 222222221 1121211 123344667
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1233 AFNAASTQKAIDILKAHPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1233 Ai~~l~~qkALei~~~~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
|..+++ +||+..+ |..+..++.+. .-|--..|+..|++|-.
T Consensus 569 aRdLFE--qaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 569 ARDLFE--QALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHH--HHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777777 7766433 44444433332 33555556666655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=86.04 Aligned_cols=132 Identities=20% Similarity=0.180 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
....+.+..|..++..|++++|+..++..+.. .|+....+...+.++...|+..+|++.+++++.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 45567888899999999999999999985543 4666677778899999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.|.......++|.+|...|++.+|+..++..+. +.+.....|..||.+|..+|+..+|...+.+.+
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 355566788999999999999999999988775 336667789999999999999888876655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00074 Score=84.17 Aligned_cols=244 Identities=15% Similarity=0.141 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-----DMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-----~~~eAi~~~~kAL~i~er 1072 (1403)
...+-..|.+++..|++++|...|...+.. +|+....|..|..+..... +.+.-..+|.+....+.+
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~ 109 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDR--------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR 109 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc
Confidence 344556899999999999999999999887 4556666666666653322 345555555554332211
Q ss_pred h-------cCCCC-h----------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cC------CCC
Q 000589 1073 C-------LGLDH-P----------------DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS--SG------PDH 1120 (1403)
Q Consensus 1073 ~-------lg~d~-p----------------~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~--~g------~d~ 1120 (1403)
. +..-. . .+.....+|-.+|....+..-...++...+...... +. ...
T Consensus 110 s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~ 189 (517)
T PF12569_consen 110 SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEP 189 (517)
T ss_pred ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCC
Confidence 1 00000 0 001122333333332222222222222222211111 00 112
Q ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 P-DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1121 p-~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
| ...++++.||..|...|++++|+.++++|++.. |.....|...|.+|...|++.+|..+++.|-.+-
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--- 258 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEARELD--- 258 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---
Confidence 3 346889999999999999999999999999853 6678899999999999999999999999987641
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh-C--h-----HHHHHHHHHH------HhCCh
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA-H--P-----DLIHAFQAVA------AAGGS 1265 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~-~--p-----~~~~a~~~La------~~G~~ 1265 (1403)
..-.-.-...+..+ ...|+.++|..... ++.. . | ++...++.+. ++|++
T Consensus 259 -----~~DRyiNsK~aKy~------LRa~~~e~A~~~~~------~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 259 -----LADRYINSKCAKYL------LRAGRIEEAEKTAS------LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred -----hhhHHHHHHHHHHH------HHCCCHHHHHHHHH------hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11111222222232 67789999987664 3331 1 1 2223333332 78999
Q ss_pred HHHHHHHHHHHH
Q 000589 1266 GNSGASANNSLN 1277 (1403)
Q Consensus 1266 ~eA~~~~ekAL~ 1277 (1403)
..|+..|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999999999988
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-05 Score=95.18 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=109.9
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH--------H
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGL---LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA--------G 1058 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~---~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~--------e 1058 (1403)
...+....|..++..|..++..++ +..|+.+|++|+++ +|+.+.++..|+.+|.....+. .
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 445677789999999999887765 78999999999998 7888888888888876653332 2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC
Q 000589 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG 1138 (1403)
Q Consensus 1059 Ai~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g 1138 (1403)
+....++++.+ ...+....+|.-+|..+...|++++|..++++|+.+. |. +.+|..+|.++...|
T Consensus 403 a~~~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G 467 (517)
T PRK10153 403 LSTELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKG 467 (517)
T ss_pred HHHHHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcC
Confidence 33333332222 1123334678888999999999999999999999862 43 578999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 000589 1139 KMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1139 ~~deAl~~lekAL~l~ 1154 (1403)
++++|++.|++|+++.
T Consensus 468 ~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 468 DNRLAADAYSTAFNLR 483 (517)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00088 Score=81.37 Aligned_cols=232 Identities=10% Similarity=0.072 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHHHhcC-------------CHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYL--AMVLYHAG-------------DMAGAIM 1061 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~L--A~iy~~~G-------------~~~eAi~ 1061 (1403)
.+..+..+|..|+..|.++.|.+.|.+++...-.+ .+...+..+|... ..+...++ +++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv--rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV--RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh--hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 46677889999999999999999999998763221 1111121222111 11111111 1122222
Q ss_pred HHHHHHHHHH----HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc
Q 000589 1062 QQHKELIINE----RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1062 ~~~kAL~i~e----r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~ 1137 (1403)
.++..+.... .++-..+|.....+.. .+-+..|+..+-+..|.+|+....-... +......+..+|..|...
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhc
Confidence 2333222110 0000112222333322 3334567888889999999875432211 223456788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHhCCCCHHHHHHHHH
Q 000589 1138 GKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV----KQLGEEDSRTKDSQNW 1213 (1403)
Q Consensus 1138 g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~----~~lg~~~~~t~~a~~~ 1213 (1403)
|+.+.|...|++|....-. .-.+.+.+|.+-|..-....+++.|+.+++.|...=. ..+...+|-....+..
T Consensus 401 ~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred CcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999875421 1245688899999999999999999999998875421 2233445555555555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1214 MKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1214 La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
|-.+.++.......|-++.....|.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5555555555566666666555555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-05 Score=75.06 Aligned_cols=102 Identities=23% Similarity=0.147 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+|++|.++-..|+.++|+.+|++++.. |...+....++..+|..|..+|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999885 55667778899999999999999999999999997642 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
+........++.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455667789999999999999999888774
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-05 Score=89.73 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD-------TAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~-------~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+.....-|..|++.|+|..|...|++|+.......+.+..+ ...++.|||.||..+++|.+|+.+..++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 44456678899999999999999999999987655544322 3467899999999999999999999999975
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS-HQHEKK 1191 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eA-i~~lkk 1191 (1403)
.|....+++.-|.+|..+|+|+.|+..|++|+++. |....+...|..+.....++.+. .++|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999975 33334455555554444333322 344444
Q ss_pred HH
Q 000589 1192 TY 1193 (1403)
Q Consensus 1192 Al 1193 (1403)
++
T Consensus 352 mF 353 (397)
T KOG0543|consen 352 MF 353 (397)
T ss_pred Hh
Confidence 33
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=71.99 Aligned_cols=96 Identities=33% Similarity=0.470 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
++..+|.++...|++++|+.++++++... |....++..+|.++...+++++|+.++++++.+. |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998863 3334678899999999999999999999998752 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367899999999999999999999988764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=71.50 Aligned_cols=96 Identities=29% Similarity=0.417 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.++.+|..+...|++++|+.++.+++... |....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46789999999999999999999998872 2233678899999999999999999999998863 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367889999999999999999999998754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.6e-05 Score=87.23 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHR-------EVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p-------~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
|...-+.|..|+..|+|..|...|.+|+..+....+.+.. ....++.|||.+|..+++|.+|+.++.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 4555667999999999999999999999987654433222 23468999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA-LRYLQE 1149 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA-l~~lek 1149 (1403)
.+....+++.-|.+|..+|+|+.|+..|++|+.+. |..-.+...|..+.....++.+. .++|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999873 33344455565555444433332 444444
Q ss_pred HHH
Q 000589 1150 ALK 1152 (1403)
Q Consensus 1150 AL~ 1152 (1403)
.+.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=84.32 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1041 NCCRYLAMVL-YHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1041 ~a~~~LA~iy-~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...+..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999875 5556667899999999999999999999999999764 67
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
++....+++.+|.++..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999998865
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00032 Score=83.51 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....|..+..++..|++++|+..+...+.. +|+........+.++...++..+|++.+++++...
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------- 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD------- 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------
Confidence 445677888889999999999999996554 56667778889999999999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|.......++|..|...|++.+|+.++.+.+. ..|+....|..||..|..+|+..+|...
T Consensus 371 -P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A----------- 430 (484)
T COG4783 371 -PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA----------- 430 (484)
T ss_pred -CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH-----------
Confidence 55567788999999999999999999998874 3566777899999999999988776654
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~ 1212 (1403)
.|..|...|+++.|+..+..+.+. .+.+.+....+-.
T Consensus 431 --------------~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~da 467 (484)
T COG4783 431 --------------RAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADA 467 (484)
T ss_pred --------------HHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHH
Confidence 344566789999999998887664 3344444444333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.2e-05 Score=71.17 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=66.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA 1173 (1403)
.+|+|++|+.++++++..... .+ ....++.+|.+|...|+|++|+.++++ +... +....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999987522 23 455677899999999999999999998 4433 23456667789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.++..+|++++|+.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=83.63 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 997 EAKNLVEMGKVQ-LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 997 ~A~~l~~lG~~~-~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
.....|..+..+ +..|+|++|+..|+..+..+ |+++....+++.||.+|+..|++++|+.+|++++..+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----
Confidence 456777777766 66799999999999999884 4566667899999999999999999999999999875
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
++++....++..+|.++..+|++++|..+|++++..+
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6788899999999999999999999999999998753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00066 Score=77.05 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII---------- 1069 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i---------- 1069 (1403)
.-..+|.+++..|+|++|+..|.-+.+. .+ --+....+||-+++.+|.|.+|.....+|-..
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNK------DD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcc------CC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3445899999999999999988776542 11 12456778999999999999999887765221
Q ss_pred HHHhcCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1070 NERCLGL---------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1070 ~er~lg~---------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
..+ ++. .-.++..-...||.+++..-.|++|++.|.+++. ++|+....-.++|.||.++.-|
T Consensus 131 ahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 131 AHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchh
Confidence 111 111 0012223344567777777788888888888773 5788888888999999999999
Q ss_pred HHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALK 1152 (1403)
Q Consensus 1141 deAl~~lekAL~ 1152 (1403)
+-+.+.+.--|+
T Consensus 202 dvsqevl~vYL~ 213 (557)
T KOG3785|consen 202 DVSQEVLKVYLR 213 (557)
T ss_pred hhHHHHHHHHHH
Confidence 988877665444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.3e-05 Score=72.48 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMA 1089 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA 1089 (1403)
.+|+|+.|+.+++++++... ..+ ....+..+|.+|+.+|+|++|+.++++ +... +......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999999842 123 455677799999999999999999998 4332 34466777889
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 000589 1090 LFYHGLNQTELALRHMSRA 1108 (1403)
Q Consensus 1090 ~~~~~~G~~~eAl~~l~rA 1108 (1403)
.+++.+|+|++|+.+|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0017 Score=76.77 Aligned_cols=225 Identities=16% Similarity=0.071 Sum_probs=162.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CCh
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPM--HRE----VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL--DHP 1079 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~--~p~----~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~--d~p 1079 (1403)
-+..|-|++|..+-.+++...++....+ .+- ....+-++..+-.-.|++.+|++-...+...+.+.-++ -..
T Consensus 285 sm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 285 SMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3456778888888888888766653222 111 12344566777788999999999999999998886542 223
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
..++..+.+|.+...-+.|+.|+..|..|..+.... ...+.+-.|+|.+|...++-+.-- ++++.. |
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI----G 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----C
Confidence 456778889999999999999999999999876443 335667789999999988765433 344332 2
Q ss_pred CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1160 EE-------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1160 ~~-------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
+. +...+.+++..|...+.++++.+|...+++.+++... .+....+...+..|+.+. ...|+..+
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~------lslgn~~e 503 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVF------LSLGNTVE 503 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHH------HHhcchHH
Confidence 22 1234667788888899999999999999999998632 123445566666677666 88899999
Q ss_pred HHHHHHHHHHHHHHhhChHHHHH
Q 000589 1233 AFNAASTQKAIDILKAHPDLIHA 1255 (1403)
Q Consensus 1233 Ai~~l~~qkALei~~~~p~~~~a 1255 (1403)
+.+..+ -+++..+.-||....
T Consensus 504 s~nmvr--pamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 504 SRNMVR--PAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHhccc--hHHHHHhcCCCchHH
Confidence 998888 777777765654433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.3e-05 Score=69.33 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN-QTELALRHMSRALLL 1111 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G-~~~eAl~~l~rAL~l 1111 (1403)
+..+..+|.+++..|++++|+.+|.+++.+ +|....++.++|.+|..+| ++.+|+.++++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578999999999999999999999999998 4778889999999999999 799999999999976
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0028 Score=69.94 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=124.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
....+.+..|+.+.|..++.+....+ |...+....-|+.+-..|++++|+++|...+. . +|...
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-------d-dpt~~ 120 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-------D-DPTDT 120 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-------c-Ccchh
Confidence 34556677888999999888765542 33344556678888889999999999887664 2 35444
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCc
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~ 1162 (1403)
.++-.--.+...+|+.-+|++.+..-++.+ +....+|..|+.+|...|+|.+|.-+|++.+-+.
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------- 184 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------- 184 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------
Confidence 555555556678899899999888877764 4456779999999999999999999999998754
Q ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 000589 1163 IQTAVCYHALAIAFNCMG---AFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1163 ~~~a~~~~~LA~~y~~~G---d~~eAi~~lkkAl~i~ 1196 (1403)
|....++..||.+++-+| ++..|..||.+|+++.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 555667778888888776 6778999999999874
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=69.26 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELII 1069 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i 1069 (1403)
.|..++.+|..++..|++++|+.+|.+++.+ +|....++.++|.+|..+| ++++|+.++++|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999998 6778889999999999999 799999999999986
|
... |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00023 Score=79.18 Aligned_cols=182 Identities=12% Similarity=0.010 Sum_probs=118.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000589 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM 1088 (1403)
Q Consensus 1009 ~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nL 1088 (1403)
+...+|.+|++++.--.+. .|.....+..||.||+...+|..|.++|.+...+ +|...+.....
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5667788888877654433 5656678899999999999999999999987665 68877777778
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q 000589 1089 ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC 1168 (1403)
Q Consensus 1089 A~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~ 1168 (1403)
|..++..+.+..|+........ +......++..-+.+....+++..+..+.++. -| ...+..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---en~Ad~ 146 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---ENEADG 146 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---CCccch
Confidence 8889999999999877654331 11112233333344455555555555444321 11 134555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..+.|.+.++.|+++.|++-|+.|++. +...|..+ ++++..+ ...+++..|+.+..
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpllA---YniALaH------y~~~qyasALk~iS 202 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLLA---YNLALAH------YSSRQYASALKHIS 202 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhh-----cCCCchhH---HHHHHHH------HhhhhHHHHHHHHH
Confidence 667777777777777777777777663 22333322 4455555 56677777776666
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00075 Score=76.63 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=64.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGN 1087 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~n 1087 (1403)
++...+|..|+.+++-.+.+- ..+....-..+|.+|+++|+|++|+..|.-+..- .+.+ +....+
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAP--AELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCC--cccchh
Confidence 345668999999888776542 2233456678999999999999999999876542 2222 456779
Q ss_pred HHHHHHHCCCHHHHHHHHHHH
Q 000589 1088 MALFYHGLNQTELALRHMSRA 1108 (1403)
Q Consensus 1088 LA~~~~~~G~~~eAl~~l~rA 1108 (1403)
||.+++.+|.|.+|.....+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998877665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=85.68 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=125.9
Q ss_pred HHH--HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHH
Q 000589 997 EAK--NLVEMGKVQLAEGL---LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---------GDMAGAIMQ 1062 (1403)
Q Consensus 997 ~A~--~l~~lG~~~~~~G~---~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---------G~~~eAi~~ 1062 (1403)
++. .++..|...+.++. .+.|+.+|.+|+... +.+|+.+.+|..+|.+++.. .+..+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 555 66778887776664 567888888888431 33789999999999998765 234566677
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1063 QHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDT 1142 (1403)
Q Consensus 1063 ~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~de 1142 (1403)
.++|+++ .+..+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|.++...|+.++
T Consensus 327 A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 327 LDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHH
Confidence 7777665 3566788999999999999999999999999976 58889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1143 ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1143 Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
|++.+++|+++... ..+.....+..-.+.....+.|+.+|-+
T Consensus 391 a~~~i~~alrLsP~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQLEPR-------RRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhccCch-------hhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999999997521 2222333444423345567777776643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0036 Score=69.04 Aligned_cols=196 Identities=14% Similarity=0.039 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000589 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFY 1092 (1403)
Q Consensus 1013 ~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~ 1092 (1403)
+.++-+++..+.+.....- ...++....|-.+..+....|+.+-|..++.+....+ |........-|..+
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHH
Confidence 4555666666655554332 2234556667777778888899999988887755442 33344556678899
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1093 HGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1093 ~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
...|+|++|+++|...++ ++|....++-.--.+...+|+.-+|++-+.+-++.+ +....+|+.|
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eL 160 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHEL 160 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHH
Confidence 999999999999999874 445555555555556778898889999998888876 4567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
+.+|...|+|++|.-++++.+-+ .|..+ .....++.++.. .....++.-|..+|. +++++-.
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~-----~P~n~---l~f~rlae~~Yt---~gg~eN~~~arkyy~--~alkl~~ 222 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLI-----QPFNP---LYFQRLAEVLYT---QGGAENLELARKYYE--RALKLNP 222 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHH---HhhHHHHHHHHHHHH--HHHHhCh
Confidence 99999999999999999998764 23333 233344443310 011334556777777 5555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0077 Score=76.57 Aligned_cols=261 Identities=13% Similarity=0.018 Sum_probs=165.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT-GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~-g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
....++....+.++.+|..++.++........ +......+......|.+....|++++|+++.+.++...-. ....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~ 494 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYR 494 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccch
Confidence 34457777888999999999999877654310 1122334566667788899999999999999999886421 1223
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
..+.++..+|.+..-.|++++|+.+..++.++.+.. ........+.+..+.++..+|+ -+..-..++.........
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHL 570 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999987764 2224455667778999999993 333333333333333222
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
...+.........+.++...-+++.+..-....+.+..... +......-++..|+.++ ..+|++++|...+.
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~------~~~Gdl~~A~~~l~- 642 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELE------FLRGDLDKALAQLD- 642 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHH------HhcCCHHHHHHHHH-
Confidence 23233222222333333333337777777777776543321 22222222334666666 89999999998887
Q ss_pred HHHHHHHhh---ChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKA---HPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~---~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
+....+.. |++...+..... .+|++.+|.....+...
T Consensus 643 -~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 643 -ELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred -HHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 44444432 333222222111 78999999988888555
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00085 Score=74.74 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=124.1
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
...|++.-+ +..+|.+|+...+|..|.++|.+.-.+ +|........-|+.+++.+.+..|+........
T Consensus 38 Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D- 106 (459)
T KOG4340|consen 38 ERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD- 106 (459)
T ss_pred hcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence 334444333 455899999999999999999987665 788888888899999999999999876654322
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.....-.++-.-+.+.+..+++..+..+.++. .| ...+...++.|.++.+.|+|++|++-|+.
T Consensus 107 -------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 107 -------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---ENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred -------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---CCccchhccchheeeccccHHHHHHHHHH
Confidence 11222344444566667777777766655442 12 23566788999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
|++.. |-+ ...-+++|.+.+..|+++.|+.+..+.++-
T Consensus 170 Alqvs----Gyq----pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVS----GYQ----PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHhhc----CCC----chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 98754 222 234578899999999999999998887764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0024 Score=74.54 Aligned_cols=264 Identities=15% Similarity=0.103 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+....+-|..-+..|+|.+|+....++-+. ++.-..+|..-+..-..+|+++.|=.|+.++-+.. .
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~ 149 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------G 149 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------C
Confidence 344455566667789999999999886554 33445567777888899999999999999988642 1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
+ .....+...+.++...|+++.|..-..++++.. +. ....+.....+|...|++.+...+..+.-+- ..
T Consensus 150 ~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~ 218 (400)
T COG3071 150 D-DTLAVELTRARLLLNRRDYPAARENVDQLLEMT-----PR---HPEVLRLALRAYIRLGAWQALLAILPKLRKA--GL 218 (400)
T ss_pred C-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cC
Confidence 2 234457778999999999999999999988854 33 3455667788999999999988887765331 12
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS-TQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~-~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+++......+-..+.+.+. ..++-..+..... .++--+..+.+|....++..-. ..|++++|.+..+++++
T Consensus 219 l~~~e~~~le~~a~~glL~-------q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQ-------QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CChHHHHHHHHHHHHHHHH-------HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2222222222223333222 2222222222111 1122233446677666555544 89999999999999998
Q ss_pred -------HhhcCCCCccccchH-HHHHHHHH---HHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1278 -------AALLGETLPRGRGFD-ERAARAAA---EVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1278 -------~~~~G~~~p~~~~~~-era~~a~~---e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
....+.-.|.-.... ..++.... +...+....|.++...+.+.+|...|+.++..-.+
T Consensus 292 ~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 292 RQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred hccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 111121111111111 11222111 22456677799999999999999999988877554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00096 Score=66.17 Aligned_cols=101 Identities=26% Similarity=0.355 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
.+-.-|......|+.+.|++.|.+++.+. |..+.+|+|.+..+.-+|+.++|+.-+.+|+++. |+...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34455677788999999999999999985 7788999999999999999999999999999884 55556
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
....++..-|.+|..+|+-+.|..-|+.|-++-
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 677889999999999999999999999998763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=87.70 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT--------ELALRHMSRALLLLSLSSGPDHPDVAAT 1126 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~--------~eAl~~l~rAL~l~~~~~g~d~p~~a~~ 1126 (1403)
++..|+.+|++|+++ +|+.+.+|..++.+|.....+ ..+.....+++.+ +..+....+
T Consensus 357 ~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRI 422 (517)
T ss_pred HHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHH
Confidence 467999999999998 588888888888877554322 2333333333322 112333467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR 1206 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~ 1206 (1403)
+.-+|.++...|++++|...|++|+++. + .+.+|..+|.+|...|++++|+++|++|+.+ .+.+|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-----~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCch
Confidence 8888999999999999999999999975 3 3578999999999999999999999999875 455553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.053 Score=70.08 Aligned_cols=335 Identities=16% Similarity=0.077 Sum_probs=202.6
Q ss_pred cHHHHHhhhhhhhhcC-CchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 000589 977 ETSDILNLQPVVKHSV-PICSEAKNLVEMGKVQL-AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1054 (1403)
Q Consensus 977 ~~~dI~~l~pvvK~~~-~~~~~A~~l~~lG~~~~-~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G 1054 (1403)
....|.++..+.+... +...++...+.+|.+++ ...++++|+.++.+++.+.++ .........+...++.+|.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcC
Confidence 3444556666664333 34456999999999998 678899999999999999866 2223334667778899999998
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM-ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMM 1133 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nL-A~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~i 1133 (1403)
... |..++++++..++.. .+.....++..+ ..++...+++..|+..++....+.... .+......+....+.+
T Consensus 115 ~~~-a~~~l~~~I~~~~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALL 188 (608)
T ss_pred HHH-HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHH
Confidence 888 999999999988652 222333333333 333334489999999999999877543 2233344455556777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHhCCC-----C
Q 000589 1134 YQDIGKMDTALRYLQEALKKNERL--LGEEHIQTAVCYHALAI--AFNCMGAFKLSHQHEKKTYDILVKQLGEE-----D 1204 (1403)
Q Consensus 1134 y~~~g~~deAl~~lekAL~l~~~~--~G~~~~~~a~~~~~LA~--~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~-----~ 1204 (1403)
....+..+++++.++++....... .+..++....++..+-. ++...|+++.+...+++.-+.+...-... +
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 788888999999999998776654 22223344444444443 45567888788877776655544432110 0
Q ss_pred HH--H--------------HHHHHH------HHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhhCh-----------
Q 000589 1205 SR--T--------------KDSQNW------MKTFKMR-ELQMNVQKQKGQAFNAASTQKAIDILKAHP----------- 1250 (1403)
Q Consensus 1205 ~~--t--------------~~a~~~------La~l~~r-~~~~~~qg~~~eAi~~l~~qkALei~~~~p----------- 1250 (1403)
.+ . .....| ...+|.. +......+..++|..++. ++++.....-
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~--k~l~~i~~~~~~~~~~~~~sl 346 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLE--KALKQIEKLKIKSPSAPSESL 346 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHH--HHHHHHHHhhccCCCCCCcCH
Confidence 00 0 001111 1111111 223344555557777776 6666554211
Q ss_pred --------H--HHH--HHHHHH----HhCChHHHHHHHHHHHHH-hhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHH
Q 000589 1251 --------D--LIH--AFQAVA----AAGGSGNSGASANNSLNA-ALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLI 1313 (1403)
Q Consensus 1251 --------~--~~~--a~~~La----~~G~~~eA~~~~ekAL~~-~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~ 1313 (1403)
. ... .+..++ ..+++..|....+.+... ...+..-..... ..+....|..+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~------------~~~~yL~gl~~ 414 (608)
T PF10345_consen 347 SEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY------------PLLHYLLGLYY 414 (608)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh------------HHHHHHHHHHH
Confidence 0 000 011111 568888888888877762 222221111111 23455557888
Q ss_pred hhCCCchhhhHHHHHHHHHH
Q 000589 1314 RPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1314 ~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
+..|+.+.|+..|.+.+..+
T Consensus 415 q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhh
Confidence 88899999999998655444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00093 Score=66.26 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+-..|..+...|+++.|++.|.+++.+ -|..+.+|++.|+.|..+|+.++|++-+.+|+++. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 344555678888999999999999999998 46788999999999999999999999999999985 455
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.....++|...|.+|..+|+-+.|..-|+.|-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5566789999999999999999999999999875
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0048 Score=73.10 Aligned_cols=202 Identities=17% Similarity=0.124 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP--MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~--~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
.+-.+..+-.-.|++.+|++-...+.+.+.+..++ .....+.....+|.....-+.|+.|...|..|.+..+..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---- 400 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---- 400 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----
Confidence 44456677778999999999999999998876442 122346677888888888999999999999999886442
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD-------HPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d-------~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.-.+.+-.|+|..|.+.++-+.- .++++.. ++. +...+.+++--|...+.++++.||..++.+.
T Consensus 401 -dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 401 -DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred -HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 23455667899999998775433 3344332 332 2235667788888899999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
|++... ......++..+..|+.+....|+..++.+..+-++++.++. ++++-...+...+..++
T Consensus 472 Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~ 535 (629)
T KOG2300|consen 472 LKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLY 535 (629)
T ss_pred Hhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 998732 11234567778899999999999999999999999998876 45666665555555555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.03 Score=66.37 Aligned_cols=300 Identities=12% Similarity=0.036 Sum_probs=192.4
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
+......++....+..-++.-...|+..-|...|.+|++.+.. .......+...|..-..+..++.|...|+-||
T Consensus 197 YerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 197 YERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455667777777777888888888888888877532 23334444555555555666666666666555
Q ss_pred HH---------------HHHhcCC---------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1068 II---------------NERCLGL---------------------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1068 ~i---------------~er~lg~---------------------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.. +++.+|. ++|..-.++...-.+....|+.+.-.+.|++|+.-
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 43 2222332 22333345556666667789999999999999863
Q ss_pred HHhhcCC-CCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000589 1112 LSLSSGP-DHPDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHE 1189 (1403)
Q Consensus 1112 ~~~~~g~-d~p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~l 1189 (1403)
....... .-...+..+.|.+. .-....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2110000 00112334444443 2346789999999999999975 2345667888889999999999999999988
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCCh
Q 000589 1190 KKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGS 1265 (1403)
Q Consensus 1190 kkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~ 1265 (1403)
-.|+-.+.+ ..+...|.-|. .+.++++....+|+ ..+.-.|....++...| ..|+.
T Consensus 428 G~AIG~cPK------~KlFk~YIelE---------lqL~efDRcRkLYE-----kfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 428 GNAIGKCPK------DKLFKGYIELE---------LQLREFDRCRKLYE-----KFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHhccCCc------hhHHHHHHHHH---------HHHhhHHHHHHHHH-----HHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 888764321 12233333332 66788888888888 66666788777777777 78999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1266 GNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1266 ~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
+.|...|+-|+.... .+-|. . +..++-.-....|.++.|..+|++.|+.-.
T Consensus 488 dRaRaifelAi~qp~--ldmpe------l----------lwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 488 DRARAIFELAISQPA--LDMPE------L----------LWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHhcCcc--cccHH------H----------HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999987211 01111 1 222332234456888999999999988754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0061 Score=68.08 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
-+..|++.|...++.|+|++|...|+..... .+..|..-.+...++.++++.+++++|+.+..+-+.++ +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 4788999999999999999999999887654 24456667889999999999999999999999998875 6
Q ss_pred CChhHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHhhcCCCCHH--------------HHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGL-----NQTE---LALRHMSRALLLLSLSSGPDHPD--------------VAATFINVAMMY 1134 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~-----G~~~---eAl~~l~rAL~l~~~~~g~d~p~--------------~a~~~~nLA~iy 1134 (1403)
.||+...+++..|..++.. .|.. +|..-|+..+.-+ ++.+. .+.--..+|..|
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887642 2333 3444444444322 22221 122234678899
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
.+.|.+-.|+..+++.++-. ++....-.++..|..+|..+|-.++|...
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999998865 33456677888999999999999988764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.068 Score=66.83 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CCCCH--------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT-----GPMHR--------EVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~-----g~~~p--------~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
-..|..-|.++-..|+.+.|+.+|..|-..+-.+. |.... ....+.+.||..|-..|++.+|+.+|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34556678888899999999999998877654431 21111 112456789999999999999999998
Q ss_pred HHHHHHHHh--cCCCC-hhHHHH---------HHHHHHHHHHCC-CHHHHHHHHHH------------------HHHHHH
Q 000589 1065 KELIINERC--LGLDH-PDTAHS---------YGNMALFYHGLN-QTELALRHMSR------------------ALLLLS 1113 (1403)
Q Consensus 1065 kAL~i~er~--lg~d~-p~~~~a---------~~nLA~~~~~~G-~~~eAl~~l~r------------------AL~l~~ 1113 (1403)
+|-.....+ ...+. .+.... +..-|.+|...| ....|..+|.+ |+++..
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 875443211 11110 010000 111233333343 44444444433 233332
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHH-----------hC------CCcHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE------ALKKNERL-----------LG------EEHIQTAVCYH 1170 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek------AL~l~~~~-----------~G------~~~~~~a~~~~ 1170 (1403)
+-+.++ .....+..-+..+....+|++|..++-. |+.++... .. ++......++.
T Consensus 1072 ~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1072 KDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 222221 1234466778888899999999877654 44444321 00 01123456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1171 ALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1171 ~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.+|.++.++|.|..|-+-|.+|=
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhh
Confidence 99999999999999998888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.024 Score=69.56 Aligned_cols=202 Identities=17% Similarity=0.200 Sum_probs=116.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSE------AFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGA 1059 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~e------AL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eA 1059 (1403)
.+++++...-.....|-..|.+|-...++++|+++|.+ |+++.+-.+ ...+...--.-|.-+.+.|+++.|
T Consensus 649 ~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 649 EILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHH
Confidence 34444444444456666678888888899999998875 444433222 223444444556677788888888
Q ss_pred HHHHHHHHHHHH---HhcCC--------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH------H-------
Q 000589 1060 IMQQHKELIINE---RCLGL--------------DHPDTAHSYGNMALFYHGLNQTELALRHMSRA------L------- 1109 (1403)
Q Consensus 1060 i~~~~kAL~i~e---r~lg~--------------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rA------L------- 1109 (1403)
+.+|-+|-.+.. ..+|. |.......|..+|.-|...|+|+.|.++|.++ +
T Consensus 726 inhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 726 INHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence 887765433221 11111 11111234556777788888888888776443 2
Q ss_pred ------HHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHH---------hCCCcH-HHHH
Q 000589 1110 ------LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYL------QEALKKNERL---------LGEEHI-QTAV 1167 (1403)
Q Consensus 1110 ------~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~l------ekAL~l~~~~---------~G~~~~-~~a~ 1167 (1403)
.+.....|+ ..+...|..-|.-+-..|+|.+|.++| .+|+.++.+. .+..|+ ....
T Consensus 806 kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 233333333 345566667777777788887777665 2444444332 111122 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1168 CYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1168 ~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....+|.-|...|+...|..+|-+|
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhh
Confidence 5567787788888777777666544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=63.97 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+|..++..|++++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999886 6888999999999999999999999999999987
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=80.06 Aligned_cols=118 Identities=24% Similarity=0.213 Sum_probs=98.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
-.++...++++.|+.++++..+. +|+ +...||.++...++-.+|+..+++++.. .|.....
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~L 236 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSEL 236 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHH
Confidence 34455667899999888886554 344 4456899999999999999999999954 3555778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
+...|.++...++++.|+.+.++|+.+ .|....+|+.||.+|..+|+++.|+..++.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 888999999999999999999999987 478889999999999999999999987764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00043 Score=77.72 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+++.|.-++..|+|.+|..-|+.-+.-+ ++++.+..+++.||.+++.+|+|+.|...|..++.-+ +++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 6778888889999999999999998874 6678889999999999999999999999999998754 66788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+++.||.+..++|+.++|...|+++++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999998865
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=61.30 Aligned_cols=202 Identities=21% Similarity=0.252 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
........+..+...+++..+...+..++.. ...+.....+..++..+...+++..|+..+.+++....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 126 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP----- 126 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-----
Confidence 3556677888999999999999999988874 12456678888999999999999999999998887521
Q ss_pred CChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMAL-FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~-~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.. .......+. ++...|+++.|..++.+++... +........+..++..+...++++.|+..+.+++....
T Consensus 127 -~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 127 -DP--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred -Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 11 222333344 8999999999999999996521 10124555667777778999999999999999998763
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN 1235 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~ 1235 (1403)
.. ....+..++..+...+++..|+..+..++..... .......++..+ ...+.+.++..
T Consensus 199 ~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~ 257 (291)
T COG0457 199 DD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLL------LELGRYEEALE 257 (291)
T ss_pred cc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHH------HHcCCHHHHHH
Confidence 21 4567889999999999999999999999886432 222233333333 34556777776
Q ss_pred HHH
Q 000589 1236 AAS 1238 (1403)
Q Consensus 1236 ~l~ 1238 (1403)
.+.
T Consensus 258 ~~~ 260 (291)
T COG0457 258 ALE 260 (291)
T ss_pred HHH
Confidence 666
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0005 Score=60.94 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|..++..|++++|+.+|++++. .+|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3589999999999999999999984 468899999999999999999999999999999864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0048 Score=80.74 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=123.0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
+|..+..|.+.-.++...++.++|.+..++||....-.-+...-+++.+|.||-.+| |.-+.-.+.|++|.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 566667777777788899999999999999997642111122344566666666655 455666678888887763
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
....|..|..+|..-+.+++|.++|+..++-|. +....+...+.+. ..+.+-+.|...+
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fL------l~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFL------LRQNEAEAARELL 1587 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHH------hcccHHHHHHHHH
Confidence 235788899999999999999999998887654 2233333444443 5666667777777
Q ss_pred HHHHHHHHHhh--ChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKA--HPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~--~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
. +||..++. |-+...-...|- +.|+.+.+..+|+..+.
T Consensus 1588 ~--rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1588 K--RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred H--HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 7 88888874 777776666666 88999999888888776
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.034 Score=70.94 Aligned_cols=225 Identities=13% Similarity=-0.005 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..|...--.|.+...+|+++.|+++.+.++...-. ......+.++..+|.+..-.|++++|..+.+++.++.++.-
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~- 531 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD- 531 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-
Confidence 34555555788999999999999999999987432 22334567899999999999999999999999999877642
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD---VAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~---~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
..+....+....+.++..+|+. |......+............+. ...++..+..++.+ ++.+..-....++
T Consensus 532 -~~~l~~~~~~~~s~il~~qGq~--~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~ 605 (894)
T COG2909 532 -VYHLALWSLLQQSEILEAQGQV--ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIE 605 (894)
T ss_pred -cHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcch
Confidence 1234456667788999999933 3333333333332222222222 33333333333333 7777777777776
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1153 KNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1153 l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
+..... +........+..||.++...|++++|...+.+....+...- .|.............| ...+|+...
T Consensus 606 ~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~l-----wl~qg~~~~ 677 (894)
T COG2909 606 VGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLIL-----WLAQGDKEL 677 (894)
T ss_pred hhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHH-----hcccCCHHH
Confidence 654322 22223333346999999999999999999999888765421 3444333333333332 378888888
Q ss_pred HHHHHH
Q 000589 1233 AFNAAS 1238 (1403)
Q Consensus 1233 Ai~~l~ 1238 (1403)
|...+.
T Consensus 678 a~~~l~ 683 (894)
T COG2909 678 AAEWLL 683 (894)
T ss_pred HHHHHH
Confidence 776555
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00082 Score=75.54 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+|+.|.-++..|+|.+|...|..-+..+ |..+....++++||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 45569999999999999999999999988874 6678889999999999999999999999999998864 6
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+++....++..||.+...+|+.++|-..|++++.-+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 778888999999999999999999999999998754
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0076 Score=65.72 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+++++|.++|.+|-.+ |....++..|=..|.+|-.+..+.. +..+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 3566777666666554 3444455566666666666554432 334566777777777
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI-GKMDTALRYLQEALKKNERLLGEEH-IQTAVCY 1169 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~-g~~deAl~~lekAL~l~~~~~G~~~-~~~a~~~ 1169 (1403)
|.. .++.+|..+++++++++... | .-...+..+..||.+|..- .++++|+.+|++|-+.+.. ++. ...-.++
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~-G-rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~ 157 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDM-G-RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCL 157 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhh-h-HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHH
Confidence 655 49999999999999998664 2 2233456677889998865 9999999999999998743 222 2233466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1170 HALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
...|..-...++|.+|+..|++...
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888889988888887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.13 Score=63.31 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSR------ALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~r------AL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
..|-.-|.+|....++++|+++|++ |+++.+-.+. ..+...--..|.-+...|+++.|+..|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3455667778888889999998765 5555554432 234444455677888899999999887655433221
Q ss_pred H---hCCC-------------cHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1157 L---LGEE-------------HIQT-AVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1157 ~---~G~~-------------~~~~-a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
+ .|.. ...+ ...|-.+|.-|...|+|+.|.++|.++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 1 1111 0111 123456788899999999998888765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.021 Score=62.43 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..+...|..|....+|..|=..|.+|-.+..+.. ...+.+.+|...+.+|... +..+|+..++++++|+.+...
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr-- 108 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR-- 108 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH--
Confidence 44555667888888889999999999998877653 3346778888888777655 999999999999999876421
Q ss_pred ChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGL-NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~-G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
-...+.-+..+|.+|..- .++++|+.+|++|-+.+..- ......-.++...|..-..+++|.+|+..|++..+....
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122345566889988765 89999999999999876431 112223456667788888899999999999987764321
Q ss_pred HhCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1157 LLGEEHIQ--TAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1157 ~~G~~~~~--~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
..-.. .-..++.-|.++....+.-.+...+++-
T Consensus 187 ---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 187 ---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred ---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 11111 1122345566676666665554444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.011 Score=77.69 Aligned_cols=205 Identities=14% Similarity=0.056 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+|+-+..+...-..+.+.++.++|....++||....-.-+...-..+.+|.||=..| |.-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 455555555555567788999999999999997641000111223455566655554 455667788999887642
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
....|..|.-+|..-+++++|.++|+..++-+. +...+|..+|..++.+.+-+.|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 245688899999999999999999998887652 45667889999999999999999999999987
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh---HHHHHHHHHH-HhCChHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHP---DLIHAFQAVA-AAGGSGNSGAS 1271 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p---~~~~a~~~La-~~G~~~eA~~~ 1271 (1403)
..+ .+|-... ...+.+. ...|+.+.+..+++ ..+..+| ++..+|..+- ..|+...+..+
T Consensus 1594 lPk---~eHv~~I---skfAqLE------Fk~GDaeRGRtlfE-----gll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1594 LPK---QEHVEFI---SKFAQLE------FKYGDAERGRTLFE-----GLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cch---hhhHHHH---HHHHHHH------hhcCCchhhHHHHH-----HHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 544 2344443 3334433 78899999999998 5555555 5555555555 77899999999
Q ss_pred HHHHHH
Q 000589 1272 ANNSLN 1277 (1403)
Q Consensus 1272 ~ekAL~ 1277 (1403)
|++++.
T Consensus 1657 feRvi~ 1662 (1710)
T KOG1070|consen 1657 FERVIE 1662 (1710)
T ss_pred HHHHHh
Confidence 999998
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=77.28 Aligned_cols=120 Identities=19% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
|-.++...+++++|+.++++.... .|+ +...|+.++...++..+|+.++.+++.. .|..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344556678899999888885543 344 3456899999999999999999999943 355577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.+...|..+...++++.|+.+.++|..+. |....+|+.||.+|..+|+++.|+..+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88899999999999999999999999876 777889999999999999999999776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0006 Score=81.63 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
..|....+++|+|..|+.+|+|++|+..|++|+++ .++++....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999987 3455544567999999999999999999999999997
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0019 Score=75.17 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
.....|.++...|++++|+.++.+. ....+......+|..+++++.|.+.++.+..+ .+|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 4455667888889999888877653 12234445667888999999999888776432 222
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIG--KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g--~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
..-+....|++....| .+.+|..+|++.... .+.+..++..+|.++..+|+|++|...+++|+..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---- 230 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---- 230 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence 2222233344444444 688888888885432 2345667888999999999999999998888652
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHhhChHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQK-GQAFNAASTQKAIDILKAHPDL 1252 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~-~eAi~~l~~qkALei~~~~p~~ 1252 (1403)
++....++.++..+. ...|+. +.+.+++. +.....+.||..
T Consensus 231 ----~~~~~d~LaNliv~~------~~~gk~~~~~~~~l~--qL~~~~p~h~~~ 272 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCS------LHLGKPTEAAERYLS--QLKQSNPNHPLV 272 (290)
T ss_dssp -----CCHHHHHHHHHHHH------HHTT-TCHHHHHHHH--HCHHHTTTSHHH
T ss_pred ----ccCCHHHHHHHHHHH------HHhCCChhHHHHHHH--HHHHhCCCChHH
Confidence 233345666777666 666776 33444444 222333445543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00094 Score=77.78 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.....|.++...|++++|++++.+. ....+......+|..+++++.|...++++-++ ..|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 4455678888899999999888653 12355666788999999999999888775433 222
Q ss_pred hHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLN--QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G--~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
..-+....|++.+..| .+.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--- 231 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--- 231 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---
Confidence 2223333444544444 68999999988532 223456778999999999999999999999987532
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAF-KLSHQHEKKTYDILVKQLGEEDSRTKD 1209 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~-~eAi~~lkkAl~i~~~~lg~~~~~t~~ 1209 (1403)
+....++.|++.+....|+. +.+.+++.+... ..++|+.+..
T Consensus 232 -----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~ 274 (290)
T PF04733_consen 232 -----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPLVKD 274 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChHHHH
Confidence 44566888999999999998 455556555433 2467776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.36 E-value=1 Score=58.40 Aligned_cols=289 Identities=14% Similarity=0.021 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000589 1035 MHREVANCCRYLAMVLY-HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~-~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~ 1113 (1403)
.....+.++..||.+++ ...++++|..++.|++.+.++ .+- ......+...++.++...+... |+.++++++...+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 34456889999999987 789999999999999999766 111 1123455667899999888877 9999999998876
Q ss_pred hhcCCCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINV-AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nL-A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.. .+......+..+ ...+...+++..|++.++....+.... | +......+....+.+....+..+++++..+++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 223333333334 333333389999999999998877532 2 22233444555567777788889999999999
Q ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHHHHHhhCh-------------------
Q 000589 1193 YDILVKQ--LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS-TQKAIDILKAHP------------------- 1250 (1403)
Q Consensus 1193 l~i~~~~--lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~-~qkALei~~~~p------------------- 1250 (1403)
....... -+..++....++..+-.+. .....|++..+...+. +++.++.....+
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~----~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~ 281 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLC----CSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS 281 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence 7766643 1222333344444433332 1255667666666554 333333333221
Q ss_pred ---------------HHHHHHH----HHH--HhCChHHHHHHHHHHHH--HhhcCCCCccccchHHHHHHHHHHHH----
Q 000589 1251 ---------------DLIHAFQ----AVA--AAGGSGNSGASANNSLN--AALLGETLPRGRGFDERAARAAAEVR---- 1303 (1403)
Q Consensus 1251 ---------------~~~~a~~----~La--~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~~~era~~a~~e~r---- 1303 (1403)
....++. .+. ..+..++|..+++++++ .............+...+.......+
T Consensus 282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~ 361 (608)
T PF10345_consen 282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC 361 (608)
T ss_pred ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence 0001111 111 45666699999999999 22221222222222222222112211
Q ss_pred HHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1304 KKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1304 ~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.+....+......+++..|...+.++......
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 22233367777789998998888888877664
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0037 Score=75.19 Aligned_cols=132 Identities=9% Similarity=-0.062 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHH
Q 000589 1043 CRYLAMVLYHAG---DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---------NQTELALRHMSRALL 1110 (1403)
Q Consensus 1043 ~~~LA~iy~~~G---~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---------G~~~eAl~~l~rAL~ 1110 (1403)
++..|...+..+ ..+.|+.++.+|+... .-.|+.+.+|..+|.|++.. .+..+|.++.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 344555554443 3457777888887332 22688899999999998753 234566777777776
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1111 LLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1111 l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
+ ++..+.++..+|.++...++++.|+.+|++|+.+. |+.+.+++..|.+....|+.++|+++++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 35556778999999999999999999999999876 7889999999999999999999999999
Q ss_pred HHHHH
Q 000589 1191 KTYDI 1195 (1403)
Q Consensus 1191 kAl~i 1195 (1403)
+|+++
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 99985
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.027 Score=63.00 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+..+++-|....+.|+|++|+.+|+...... +-.|..-++...++..++..++|++|+.+..+-+.+. +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 4567777888889999999999999876431 3345567889999999999999999999999998874 67
Q ss_pred CHHHHHHHHHHHHHHHHc-----CCHH---HHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDI-----GKMD---TALRYLQEALKKNERLLGEEHI--------------QTAVCYHALAIAFN 1177 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~-----g~~d---eAl~~lekAL~l~~~~~G~~~~--------------~~a~~~~~LA~~y~ 1177 (1403)
||+...+++..|.++... .+.. +|+.-|++.+..+ |++. ..+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887653 2333 4444444444332 2221 12223356789999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1178 CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1178 ~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..|.+-.|+..+++.++-+ ++.+.+.+++..|...| ...|-.++|.....
T Consensus 179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY------~~lgl~~~a~~~~~ 228 (254)
T COG4105 179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAY------YALGLTDEAKKTAK 228 (254)
T ss_pred HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHH------HHhCChHHHHHHHH
Confidence 9999999999999988754 34567778888888887 77888888875443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00076 Score=80.75 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1035 MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
..|..+.+++++|.+|+.+|+|++|+..|++|+.+. +++.+...+|+|+|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999999983 444444467999999999999999999999999986
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0089 Score=64.43 Aligned_cols=99 Identities=22% Similarity=0.193 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...|..+++.|..|-..|-+.-|.--|.+++.+ .|..+.+++.||..+...|+|+.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 456889999999999999999999999999998 6788899999999999999999999999988887
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL 1109 (1403)
+|..--+..|.|..++.-|+|.-|.+-+.+-.
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 46666778889999999999999988776544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0034 Score=64.46 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
-+..++..|...+..|+|++|++.|+.....+ +..+....+...|+.+|+..+++++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 36778899999999999999999998876653 445566788999999999999999999999999988 47
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQ---------------TELALRHMSRALLLL 1112 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~---------------~~eAl~~l~rAL~l~ 1112 (1403)
.||....+++..|.+++.+.. ..+|...|++.+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 889999999999999998876 777888887777653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0035 Score=66.64 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+-.-|.-++..|+|++|..-|.+||.++.... ......+|.+.|.+...++.++.|+.-+.+||.+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 356667789999999999999999999999975432 3556788999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.|....++...|.+|..+.+|++|+.-|++.+++
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4778888999999999999999999999999875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=68.66 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
..+.....+..|.-++..|++++|..+|+-.+.+ .+.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 5677888899999999999999999999876664 23334567899999999999999999999998753
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
.++|. ..+..|.||..+|+...|+.+|+.++.
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23333 378899999999999999999999987
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.11 Score=55.01 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=155.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.+.+..+...+..++..... ......+..++..+...+++..+...+..++.. ...+.....+..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 34556666666665554211 024567788899999999999999999998874 123566778889999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~ 1169 (1403)
++...+++..|+..+..++..... . .......+. ++...|+++.|..+|.+++... +........+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 170 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEAL 170 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHH
Confidence 999999999999999998864211 1 222333344 8999999999999999996522 1012345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhC
Q 000589 1170 HALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAH 1249 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~ 1249 (1403)
..++..+...+++..|+..+.+++...... .......++..+ ...+++.+|+..+. +++...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~a~~~~~--~~~~~~~~~ 235 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLY------LKLGKYEEALEYYE--KALELDPDN 235 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHH------HHcccHHHHHHHHH--HHHhhCccc
Confidence 667777889999999999999998864321 344455666665 67778889988888 555544431
Q ss_pred hHHHHHHH-HHHHhCChHHHHHHHHHHHHH
Q 000589 1250 PDLIHAFQ-AVAAAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1250 p~~~~a~~-~La~~G~~~eA~~~~ekAL~~ 1278 (1403)
........ .+...+.+.+|...+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111111 111556788888888888873
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=68.55 Aligned_cols=101 Identities=12% Similarity=-0.109 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....-..++..|.-++.+|++++|..+|+-..-. ++ ...+.+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3445677888999999999999999999865543 33 334567899999999999999999999998873
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
.++| ...+..|.||+.+|+...|+.+|..++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2333 3477899999999999999999999986
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00045 Score=55.22 Aligned_cols=42 Identities=36% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
++.++.+||.+|..+|++++|+.++++++.+.++.+|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00051 Score=54.89 Aligned_cols=42 Identities=38% Similarity=0.489 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
++.++.+||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 357899999999999999999999999999999999999985
|
|
| >KOG3965 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00077 Score=67.70 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=65.9
Q ss_pred ccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCC---CCcccHHHHHHHhc
Q 000589 245 CVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKAN---SEATTLIGLLQKIS 321 (1403)
Q Consensus 245 ~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~---~~~hsL~~Ll~~~S 321 (1403)
.|..|.+|..=|- -.||+||.|+|+|+..|||--+.+||=|-+|-..-||---..-. ..+-|++.||..||
T Consensus 47 ~V~~i~VSe~Lp~------~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~IS 120 (160)
T KOG3965|consen 47 AVQHISVSEMLPR------TSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDIS 120 (160)
T ss_pred HHHHHHHHHhcCC------CCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcC
Confidence 5667888887554 48999999999999999999999999999887777776433222 24789999999999
Q ss_pred HHHHHHHHH
Q 000589 322 SKFKKAFRE 330 (1403)
Q Consensus 322 ~~F~~~~~~ 330 (1403)
|.|+..|-.
T Consensus 121 P~y~E~Fg~ 129 (160)
T KOG3965|consen 121 PLYRERFGN 129 (160)
T ss_pred hHHHHHHHH
Confidence 999999975
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0047 Score=70.38 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=96.1
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---GDMAGAIMQQH 1064 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---G~~~eAi~~~~ 1064 (1403)
-.++..++.+++.+..+|.+|+.+|++..|...|.+|+.+ .++....+..+|.+++.+ ....+|...++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455566677999999999999999999999999999998 334455667777776654 34578999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+++.. +|..+.+++.||..++..|+|.+|...++..+... .++.|....+-..+
T Consensus 218 ~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~i 271 (287)
T COG4235 218 QALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSI 271 (287)
T ss_pred HHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHH
Confidence 99886 46778899999999999999999999999988753 34555544433333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.17 Score=58.84 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=100.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-h-cCCCCh----h
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELIINER-C-LGLDHP----D 1080 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i~er-~-lg~d~p----~ 1080 (1403)
...+|+++.|..++.++-.+............+..+++.|...+..+ ++++|..++++|+++.+. . ....++ -
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887653322334457889999999999999 999999999999999765 1 112233 3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...++..|+.+|...+.++...+ ..+++......+| ++|..... .+-.+ ...++.+++.+.+.+.+.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L--~l~il-~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL--KLEIL-LKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH--HHHHH-hccCChhHHHHHHHHHHHhc
Confidence 46778889999999998865555 4455555555443 34544322 22222 22788898888888887643
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0067 Score=62.28 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...++.-|.-.+..|+|.+|+..++.....+ +-.+...++...|+.+|+..++|++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4567788889999999999999998876543 334556788999999999999999999999999986 488
Q ss_pred CHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGK---------------MDTALRYLQEALKKN 1154 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~---------------~deAl~~lekAL~l~ 1154 (1403)
||.+..+++..|.++..+.. ..+|...|++.++..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999998876 677777777776654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=71.57 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
+-+.|..|+.+|.|++|+++|.+++.+ .|...-.+.+.|.+|+.+..|..|..-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 667899999999999999999999988 34445578899999999999999999999999984 45
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
...+|...+..-..+|...+|.+-++.+|++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 6889999999999999999999999999986
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=66.71 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---NQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---G~~~eAl~~l~rAL~l~ 1112 (1403)
+|+.++-+..||.+|+.+|++..|..-|++|+++. ++....+..+|.+++.+ ....++...+++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67778889999999999999999999999999983 34444566667666543 3467888999999864
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~ 1174 (1403)
+|....+++.||..++..|+|.+|+..++..++.. .++.+....+-..++.
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~ 273 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIAR 273 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHH
Confidence 46678889999999999999999999999988864 3344444433333333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0053 Score=65.29 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHH
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166 (1403)
Q Consensus 1087 nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a 1166 (1403)
.=|.-++..|+|.+|..-|.+||+++.... ......+|.|-|.++..++.++.|+.-..+|+++. |.+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~ 168 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYE 168 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhH
Confidence 457778999999999999999999875542 24567789999999999999999999999999986 5666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1167 ~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.++...|.+|..+..|++|++-|++.+++
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 77888999999999999999999998875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.099 Score=58.51 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
..-|.+|.+-|++++|+...++...+ .+...--.++.++.+++-|...++++..+-..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------- 169 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED--------- 169 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---------
Confidence 33456667777777777666552221 22222334555666667777766666654211
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQD----IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1124 a~~~~nLA~iy~~----~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
.++..||..+.. -+++.+|.-+|++.-+. .+.+..++..+|.+...+|+|++|...++.|+.
T Consensus 170 -~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 170 -ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 123333333332 23345555555433221 133455666777777777777777777777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.029 Score=59.35 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=114.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
+....+.=+.+.++.-..+.+++ .|. ..-...||.....+|++.||..+|++++.-. + ......
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~--------ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~ 126 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAI--------APT-VQNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAM 126 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhh--------chh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHH
Confidence 34444444555555544454444 232 3345679999999999999999999998642 1 223456
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
+..++...+..+++..|...+++..+.-.. .........+|.+|..+|++.+|...|+.++..+.
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp--------- 191 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP--------- 191 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC---------
Confidence 778999999999999999999988764211 11233456789999999999999999999998751
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
........+..+..+|+.++|...+....+-..
T Consensus 192 g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 192 GPQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 123444567888999999999887776655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.032 Score=69.51 Aligned_cols=185 Identities=15% Similarity=0.009 Sum_probs=124.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH----AGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~----~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
-.|+-+.++.++.++.+ ...+.++.-....-.|+.....+.. ....+.|...+...... .|+....+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 46899999999998865 2222111111111222222222222 34556666666666555 36777788
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
...|.++...|+.++|++.|++++...... ......+++.+|.++..+.+|++|..++.+.++.. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHH
Confidence 899999999999999999999988532221 12335668999999999999999999999888743 2345
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAF-------KLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~-------~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
+...+..|.+|...|+. ++|..+++++-....+..|..-|.-.-+...+
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~ 395 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKA 395 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Confidence 66778889999999999 78888888887777766664444333333333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=1.3 Score=53.22 Aligned_cols=188 Identities=12% Similarity=0.116 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN--- 1154 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~--- 1154 (1403)
||. ...+...|.+....|+...|...|.+|++.. |. +......+...|..-..++.++.|.-.|+-||+..
T Consensus 204 HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~----~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 204 HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFL----GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 554 4567888999999999999999999999875 33 34455666777777778888898888888777642
Q ss_pred ------------HHHhCCC---------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1155 ------------ERLLGEE---------------------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1155 ------------~~~~G~~---------------------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
++.+|.. +|..-.+++.+-.+....|+.+.-.+.|++|+.-..-. .
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~-~ 356 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA-S 356 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch-h
Confidence 2223321 12223456666677777899998889999887631100 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH----HhCChHHHHHHHHHHH
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA-HPDLIHAFQAVA----AAGGSGNSGASANNSL 1276 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~-~p~~~~a~~~La----~~G~~~eA~~~~ekAL 1276 (1403)
.......-.|.|+.... -......+.+.+.+.++ .+|++.+. +-..+..+...| ++.+...|...+-.|+
T Consensus 357 ekr~W~RYIYLWinYal---yeEle~ed~ertr~vyq--~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYAL---YEELEAEDVERTRQVYQ--ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHH--HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 00111122333333321 01245567777777777 77776652 223333333333 5556666655555554
Q ss_pred H
Q 000589 1277 N 1277 (1403)
Q Consensus 1277 ~ 1277 (1403)
.
T Consensus 432 G 432 (677)
T KOG1915|consen 432 G 432 (677)
T ss_pred c
Confidence 3
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=68.17 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
+..+..+-+-|..++...+|..|+..|.+|+.+ +|..+..|.+.|.+|+++.+++.+..-.++|+++
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql----- 73 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL----- 73 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----
Confidence 445777888899999999999999999999988 7888899999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.|..+..++.||.+......|++|+..+.+|..+.+..
T Consensus 74 ---~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ---DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ---ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 48889999999999999999999999999999887654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.051 Score=65.56 Aligned_cols=129 Identities=15% Similarity=0.059 Sum_probs=101.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-----
Q 000589 1006 KVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD----- 1080 (1403)
Q Consensus 1006 ~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~----- 1080 (1403)
.......+...-+++..+||++ .|+.+.+|..||.-. ..-..+|+.+|++|++..+..+|.+...
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3445677899999999999999 578888988887532 3446899999999999998887763211
Q ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1081 ------------TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1081 ------------~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
...+...||.|..++|+.++|++.++..+.... ..+...+..||-.++..++.|.++..++.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 134556899999999999999999999886421 12456789999999999999999998887
Q ss_pred HH
Q 000589 1149 EA 1150 (1403)
Q Consensus 1149 kA 1150 (1403)
+-
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 63
|
The molecular function of this protein is uncertain. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.057 Score=53.12 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1038 EVANCCRYLAMVL--YHAGDMAGAIMQQHKELIINERCLGL---DHP-DTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy--~~~G~~~eAi~~~~kAL~i~er~lg~---d~p-~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
+++.+|..|+..- ..-|-|++|...|++|..+.+.+... ||. -.+.++..|+..+..+|+|++++....+++..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4667777776554 45699999999999999998665322 222 23567888999999999999999999999988
Q ss_pred HHhhcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1112 LSLSSGPDHPD----VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1112 ~~~~~g~d~p~----~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
+.+. |+-|.+ .+.+.++-|..+..+|+.++|+..|+.+-++....-|
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7764 443333 4556678899999999999999999999988765544
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.15 Score=57.16 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE---------- 1071 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e---------- 1071 (1403)
+++++-....+++++|+..|.+.+..--..-...-.+.-.+...|+.+|...|++..--+.....-..++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5677788888999999999988876510000001123345678899999999888543333322222111
Q ss_pred ------HhcC-CCC-hhHH--------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1072 ------RCLG-LDH-PDTA--------------------HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1072 ------r~lg-~d~-p~~~--------------------~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
...+ .|+ ++.+ ..-..+..+++..|.|.+|+....-.+.-+++. .|.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccce
Confidence 1111 111 1111 112346778888999999999888887666664 456777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
...+..-..+|....+..++...+..|.......+-|. ...+..-..-|...+...+|.-|..||-+|++-|.. +..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l~~ 241 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--LKM 241 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--ccc
Confidence 77777778888888888888888888777665554331 122333344466677788999999999999987652 344
Q ss_pred CHHHHHHH
Q 000589 1204 DSRTKDSQ 1211 (1403)
Q Consensus 1204 ~~~t~~a~ 1211 (1403)
|.....++
T Consensus 242 d~kAc~sL 249 (421)
T COG5159 242 DVKACVSL 249 (421)
T ss_pred hHHHHHHH
Confidence 44444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0065 Score=54.95 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|..+|...++|++|+.++++++.+ +|.....+..+|.++..+|++.+|+..+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999998 4778889999999999999999999999999976
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.089 Score=63.59 Aligned_cols=128 Identities=18% Similarity=0.142 Sum_probs=100.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH-------
Q 000589 1049 VLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP------- 1121 (1403)
Q Consensus 1049 iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p------- 1121 (1403)
-..+..+.+.-+.+.++|+++. |+-+.+|..||.- ...-..+|+.+|++|++..+..++.+..
T Consensus 177 ~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 3456678889999999999984 6777888877752 2345789999999999988777665311
Q ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1122 ----------DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1122 ----------~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
-...+...||++..++|+.++|++.+++.++... ..+...+..+|..++..++.|.++...+.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1245667899999999999999999999887541 224566899999999999999999988876
Q ss_pred H
Q 000589 1192 T 1192 (1403)
Q Consensus 1192 A 1192 (1403)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 3
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.045 Score=59.18 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+.+.+..++..|..|-..|-+.-|.--+.+++.+ .|....+++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4567888889999999999999999999999998 4788889999999999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+|..-.+..|-|..+..-|+|.-|.+-+.+-..- .+++|.....+ .| -...-+..+|...+.+-.+-
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWL-Yl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWL-YL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHH-HH---HHhhCCHHHHHHHHHHHHHh
Confidence 5666677889999999999999998877654432 23344332211 11 12233566666554433221
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHH----HhCChHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAH----PDLIHAFQAVA----AAGGSGN 1267 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~----p~~~~a~~~La----~~G~~~e 1267 (1403)
+..+...+.-....|+.+... + .+. ++..-.+++ .....++..|| ..|+..+
T Consensus 196 ----~d~e~WG~~iV~~yLgkiS~e------------~--l~~--~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 196 ----SDKEQWGWNIVEFYLGKISEE------------T--LME--RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred ----ccHhhhhHHHHHHHHhhccHH------------H--HHH--HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 111112222222333333210 0 011 111111111 12335677777 6799999
Q ss_pred HHHHHHHHHHH
Q 000589 1268 SGASANNSLNA 1278 (1403)
Q Consensus 1268 A~~~~ekAL~~ 1278 (1403)
|..+|+-|+..
T Consensus 256 A~~LfKLaian 266 (297)
T COG4785 256 ATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0056 Score=55.38 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
..+|+.+++|++|+.++++++.+ +|.....+..+|.+|+.+|++.+|+..+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999998 6778889999999999999999999999999987
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0034 Score=55.93 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=47.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
++..|++++|+.+|++++.. +|....++..+|.+|...|++++|...+++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999988 5667788999999999999999999999998875
|
... |
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=56.81 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=64.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
+.|+|++++|..+.+.+.++++|.+|++.|..... +.-....|.++| +.|+|...|+++ ||++ +++|.|+..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~~G-----~~L~d~~~L~~~-~i~~-~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN-VPEEQQRLLFKG-----KALADDKRLSDY-SIGP-NAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEEEc
Confidence 36899999999999999999999999999988764 556778999999 889999888887 7888 899999876
Q ss_pred C
Q 000589 164 L 164 (1403)
Q Consensus 164 ~ 164 (1403)
|
T Consensus 73 ~ 73 (74)
T cd01807 73 P 73 (74)
T ss_pred C
Confidence 5
|
GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.13 Score=50.67 Aligned_cols=120 Identities=21% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---CH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEM--GKVQLAEGLLSEAYTLFSEAFSILQQVTGPM---HR-EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 998 A~~l~~l--G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~---~p-~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
+..|+.+ |.-.+..|-|++|..-+.+|+++...+.... |. --+-|+..|+..+..+|+|++++....++|..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4444444 5566778999999999999999976654332 22 2367899999999999999999999999999987
Q ss_pred HhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCC
Q 000589 1072 RCLGLDHP----DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1072 r~lg~d~p----~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~ 1118 (1403)
+- |.-|. .++.+.++.|..+...|+.++|+..|+.+-++....-|.
T Consensus 87 RR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 75 33232 356677889999999999999999999999987765554
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.15 Score=60.86 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC--CRYLAMVLYHAGDMAGAIMQQHKELI-INERCL 1074 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a--~~~LA~iy~~~G~~~eAi~~~~kAL~-i~er~l 1074 (1403)
+..++..++.++..|+|..|..++... .+.+...+...|+...+ +++||-+++++|.|.-+..+|.+|++ ...+.-
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 455666889999999999999888653 33333233334555444 47899999999999999999999996 332221
Q ss_pred -CC--------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1075 -GL--------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1075 -g~--------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
|. ........++|.|..|...|++-.|.++|.++...+
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 21 111235678999999999999999999999988754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0037 Score=55.70 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=47.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+...|+|++|+.+|++++.. +|....++..+|.+|...|++++|..++++++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35789999999999999976 46667778999999999999999999999988754
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.24 Score=56.77 Aligned_cols=161 Identities=17% Similarity=0.028 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
-+.+.+..|++.+|.....+.+.- +|....+...--..++.+|+...-...+++.+..+ .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345566778888877777776653 46555566656667777888888888877777554 245566666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~ 1205 (1403)
..-.++..+.+.|-|++|.+...+|+++. +....+.+.++.++...|++.++.+++.+.-...+. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~------s 242 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ------S 242 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh------h
Confidence 66677778888888888888888888765 345667778888888888888888888776554431 1
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1206 RTKDSQ--NWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1206 ~t~~a~--~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....+. -..+.++ ...+.|+.|+++|.
T Consensus 243 ~mlasHNyWH~Al~~------iE~aeye~aleIyD 271 (491)
T KOG2610|consen 243 WMLASHNYWHTALFH------IEGAEYEKALEIYD 271 (491)
T ss_pred hHHHhhhhHHHHHhh------hcccchhHHHHHHH
Confidence 111111 1223333 55577777777776
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.34 Score=55.83 Aligned_cols=260 Identities=15% Similarity=0.091 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVL-YHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy-~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....++|..|...|++++-..+....-..+..+. .+..+.....|-... ..-+....-+.++..+++...+-..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR-- 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR-- 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--
Confidence 4567899999999999887777776666554432 234445555544433 3345566777888888776544210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
.......-..|..+|+..++|.+|+.+....+.-.++. .|.+.....+..-..+|..+.+..+|...+..|.......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 01112234568899999999999999998888777665 4556666667777888889999999999988887776655
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+-+. ...+..-..=|.++....||.-|..||=+|++-|... .++.....++..+-... ...+..++-..++
T Consensus 202 YcpP-qlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcK------IMln~~ddv~~ll 272 (411)
T KOG1463|consen 202 YCPP-QLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCK------IMLNLPDDVAALL 272 (411)
T ss_pred ccCH-HHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHH------HHhcCHHHHHHHH
Confidence 5332 2234444555777888899999999999998876542 33444444444443333 3344555544444
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH------HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA------AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La------~~G~~~eA~~~~ekAL~ 1277 (1403)
.-+.+++ .......++..++ ...+|+.|+..|..-+.
T Consensus 273 s~K~~l~---y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 273 SAKLALK---YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred hhHHHHh---ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 4223333 1122233344444 33456666666665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.076 Score=56.28 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=104.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFIN 1129 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~n 1129 (1403)
..++=+.+.+..-..+.+.+ ..+.+-.+.||..+...|++.+|..+|++++. |. .......+..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~---------ApTvqnr~rLa~al~elGr~~EA~~hy~qals------G~-fA~d~a~lLg 129 (251)
T COG4700 66 LQQKLDPERHLREATEELAI---------APTVQNRYRLANALAELGRYHEAVPHYQQALS------GI-FAHDAAMLLG 129 (251)
T ss_pred HHHhcChhHHHHHHHHHHhh---------chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc------cc-cCCCHHHHHH
Confidence 33344445554444444444 24556678899999999999999999999985 22 1122345778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 000589 1130 VAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKD 1209 (1403)
Q Consensus 1130 LA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~ 1209 (1403)
++......+++..|...+++..+.... .........+|.+|...|++..|...++.++..+. .+.
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~--- 194 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQ--- 194 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHH---
Confidence 999999999999999999988775422 12233456789999999999999999999987532 111
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1210 SQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1210 a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+....+.+. ..+|+..+|..-+.
T Consensus 195 ar~~Y~e~L------a~qgr~~ea~aq~~ 217 (251)
T COG4700 195 ARIYYAEML------AKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHH------HHhcchhHHHHHHH
Confidence 122223333 67887777766554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.041 Score=61.00 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....+.+..++.-.+.|.-..+++.+.++.. .+.-......||.+.++.|+.+.|..+++..-.......+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 5566777888888899999999999888742 23444567789999999999999999999776554443222
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
........+.+.+|...++|.+|...|.+.+.. ++..+.+.++-|.|+...|+..+|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 234567889999999999999999999888753 45567778999999999999999999999988765
Q ss_pred hCCCcHHHHHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
+.+...-...++|..+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 233333345556665543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.03 Score=62.27 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=83.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-----cHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE-----HIQTAVC 1168 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~-----~~~~a~~ 1168 (1403)
....+++|++.|.-|+..... .+.++...+.++..+|++|..+|+-+....++++|++.+.+.+... ......+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345788899988888866543 3556678899999999999999999999999999999888775433 3455778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
++.+|.++...|++++|..++.+.+..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999999988763
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.035 Score=61.77 Aligned_cols=101 Identities=22% Similarity=0.125 Sum_probs=83.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD-----HPDTAHS 1084 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d-----~p~~~~a 1084 (1403)
....+++|++.|.-|+-..+- .+..+...+.++..+|++|..+|+.+....++++|+..+++.+-.. ..+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345688999999988877543 4556668899999999999999999999999999999988876332 2245678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
++.+|.++.+.|++++|..+|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999999864
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.6 Score=51.47 Aligned_cols=268 Identities=15% Similarity=0.033 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVA-NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a-~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+.-++..+..|+|+.|..-|+-.+. +|++- --+..|-.--..+|..+.|+.|.+.|....
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------- 184 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------- 184 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------
Confidence 334457778889999999998887654 34431 112222223356899999999999987763
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT--FINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~--~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
|...++...+-...+..|+|+.|+++........ +.+.+-.+...+ +.--+.-+ -.-+...|...-.+++++.
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~-- 259 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA-- 259 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC--
Confidence 4445555555555678999999999998876542 223332222222 22222222 2345778888888888765
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
++..-.-..-+..|+..|+..++-..++.+.+. .-||.....|... ..|+ .++.-
T Consensus 260 ------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~a-----------r~gd--ta~dR 314 (531)
T COG3898 260 ------PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRA-----------RSGD--TALDR 314 (531)
T ss_pred ------CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHh-----------cCCC--cHHHH
Confidence 444455566788999999999999999888764 4588876554332 2232 23333
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ ++-.+....|+...+....+ ..|++..|..-.+.+.+.. |+... .+.++. .-
T Consensus 315 lk--Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~------pres~-------------~lLlAd-Ie 372 (531)
T COG3898 315 LK--RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA------PRESA-------------YLLLAD-IE 372 (531)
T ss_pred HH--HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC------chhhH-------------HHHHHH-HH
Confidence 33 33233333344444444443 6678887777666665522 11111 112222 12
Q ss_pred HhhCCCchhhhHHHHHHHHHHhcC
Q 000589 1313 IRPHGLPAQALPPLTQLLNIINSS 1336 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i~~s~ 1336 (1403)
....|+..+....+-|++.--+-+
T Consensus 373 eAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hhccCchHHHHHHHHHHhcCCCCC
Confidence 234488888888888888776644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.085 Score=65.83 Aligned_cols=140 Identities=15% Similarity=0.017 Sum_probs=105.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
....+.|.+++...... .|+-+-.+...|.++...|+.++|++.+++++...... ..-...+++.+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w 313 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAW 313 (468)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHH
Confidence 34566777777776665 45667778899999999999999999999998533221 1223457899999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM-------DTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~-------deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
++..+.+|++|..++.+..+. ..-..+...+..|.++...++. ++|..+|.++-.+..+..|...|
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999998863 1234566677889999999999 88888888888887776665555
Q ss_pred HHHHHH
Q 000589 1164 QTAVCY 1169 (1403)
Q Consensus 1164 ~~a~~~ 1169 (1403)
....+.
T Consensus 387 ~E~Fv~ 392 (468)
T PF10300_consen 387 LEKFVI 392 (468)
T ss_pred hHHHHH
Confidence 443333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=53.33 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHRE-VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~-~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+..+...+..++++++..++.++.............. ...+|..|..+ ..+.+.+++..+.......
T Consensus 31 ~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~--------- 100 (352)
T PF02259_consen 31 YSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN--------- 100 (352)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc---------
Confidence 334455556688999999999999988765443332222 23333333322 2334445555544222110
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG--PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g--~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+...... +-..-.+......-....+..+.+...++. ......+.++..++.+....|+++.|..++.++......
T Consensus 101 ~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~ 178 (352)
T PF02259_consen 101 PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS 178 (352)
T ss_pred HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc
Confidence 0000000 001111111112223333444443333332 123567888999999999999999999999987764311
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
.......+.+..+.++...|+..+|+..++..+.
T Consensus 179 ----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 179 ----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred ----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112455677889999999999999999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=67.23 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+-..|.-|+.+|.|++|+++|.+++.+. |.....+.|.|..|+.+.+|..|+.-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 3456889999999999999999999873 5556678899999999999999999999999873 45
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+|...|..-..+|...+|.+-++.+|++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 67889999999999999999999999999874
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.5 Score=50.91 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhh--cCCCCH----H
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN-QTELALRHMSRALLLLSLS--SGPDHP----D 1122 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G-~~~eAl~~l~rAL~l~~~~--~g~d~p----~ 1122 (1403)
...+|+++.|..++.|+-.+........-...+..++++|.-....+ +++.|..++++|.+++... ....++ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877542111112346788999999999999 9999999999999997551 112222 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
...++..|+.+|...+.++...+ ..++++..+.-+|. ++.... ..+ .++...++.+++.+.+.+++.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEVFL--LKL-EILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHHHH--HHH-HHHhccCChhHHHHHHHHHHHh
Confidence 56788899999999998865544 34455555444443 333221 122 2222278888888888777653
|
It is also involved in sporulation []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.15 Score=56.74 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
....+.++.++.-+++|.-.+..+.+.+.. +.+........||.+..+.|+.+.|..+++++-.......+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 456777888999999999999999998874 23444555677899999999999999999987655444322
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
-........+.+.+|...++|.+|...|.+++..- +..+.+.++-|.|+...|+...|++.++.+..+.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 23345567889999999999999999999887642 4566778889999999999999999999887753
Q ss_pred hCCCCHHHHHHHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~ 1218 (1403)
|.+..+-....+|..+|
T Consensus 317 --P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMY 333 (366)
T ss_pred --CccchhhhHHHHHHHHH
Confidence 33444445556666655
|
|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0092 Score=54.16 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=59.8
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|++++|..+.+.+.++++|.||++.+.... .+.-....|.+.| ..|+|...|.+ -||+. +++|.|+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~-gi~~~~q~Li~~G-----~~L~D~~~l~~-~~i~~-~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAE-GVDPCCQRWFFSG-----KLLTDKTRLQE-TKIQK-DYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEECC-----eECCCCCCHHH-cCCCC-CCEEEEE
Confidence 36899999999999999999999999998775 4677888999999 88999999988 57886 9999886
|
DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.02 Score=62.87 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.-+..-|..|+.-.+|..|+..|-+||.+ +|..+..|.|-|.+|+...+++.+..-.++|+++ .
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~ 74 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------D 74 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------C
Confidence 33455567788888999999999999987 5888889999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|+.+...+.||..+.....|++|+..+++|..+....
T Consensus 75 ~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 75 PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999998887553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.72 Score=55.27 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
...+..|...+.+++...++..+...-.......+|=..|....+|+.-+.+.+..-.+ ...+-+........+|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 44555566666677776666555322333455667777788889998888877654433 11122334455667888
Q ss_pred HHHH---CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHh
Q 000589 1091 FYHG---LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI---------GKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1091 ~~~~---~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~---------g~~deAl~~lekAL~l~~~~~ 1158 (1403)
++.+ .|+.++|+..+..++.- .......++..+|.+|-.+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 99999999999887643 2233445677788877643 235666666666665431
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....-.|++.++...|...+...-+++.
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred ------cccchHHHHHHHHHcCCcccchHHHHHH
Confidence 1223346777777777644444333333
|
|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0095 Score=53.97 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=61.7
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
|.|+++.|..+.+.+.+.++|.+|++.|..... +.-+...|.++| ..|+|...|++ -|+++ +++|.||.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~q~Li~~G-----~~L~d~~~l~~-~~i~~-~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG-VPPDQLRVIFAG-----KELRNTTTIQE-CDLGQ-QSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC-CCHHHeEEEECC-----eECCCCCcHHH-cCCCC-CCEEEEEe
Confidence 578999999999999999999999999988764 677889999999 88999999988 48988 99999884
|
parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=53.99 Aligned_cols=112 Identities=22% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC--C------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD--H------------PDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d--~------------p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.+...|......++...++..+++++.++.--+-++ . .....++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344456666778889999999999998876433221 1 12345667788889999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
++.+. |..-.++..+-.+|...|+..+|+.+|++....+.+.+|..
T Consensus 88 ~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99864 66677899999999999999999999999999999888864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.76 Score=52.91 Aligned_cols=165 Identities=11% Similarity=0.018 Sum_probs=126.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
-+-+.+..|++.+|.....+.++- +|.-.-+..---.+++.+|+...-...+++.+-.. ..|-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345666788888888888887765 45444555555567888899888888887776542 356676677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
....++..+...|-|++|++..++|+++ ++....+...++.++...|++.++.++..+.-..... ...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhH
Confidence 7778899999999999999999999976 4566788889999999999999999998887665432 123
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....-|..-|.++..-+.|+.|++.|..-
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 33445666788888889999999998764
|
|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.015 Score=53.39 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=61.8
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
|.|+++.+..+.|.+.++++|.+|++.|..... +.-..+.|.++| ..|+|...|++. |+++ +.+|.|+..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~G-----~~L~D~~tL~~~-~i~~-~~tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER-VQADQFWLSFEG-----RPMEDEHPLGEY-GLKP-GCTVFMNLR 70 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC-CCHHHeEEEECC-----EECCCCCCHHHc-CCCC-CCEEEEEEE
Confidence 579999999999999999999999999987764 677889999999 889999999885 8988 888988754
|
ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. |
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=53.28 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=62.3
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
.|.|++++|..+.+.+.+.++|.+|++.|..... +.-.+..|.++| ..|+|...|++. ++.+ +++|.|+..
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~L~d~~~l~~~-~i~~-~~~i~l~~~ 72 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG-IDVKQIRLIYSG-----KQMSDDLKLSDY-KVVP-GSTIHMVLQ 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEECC-----EEccCCCcHHHc-CCCC-CCEEEEEEE
Confidence 6899999999999999999999999999999875 567889999998 789999888877 6777 889988754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.13 Score=53.42 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM--------------HREVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~--------------~p~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
..+...|......++...++..+.+++.++..-+-++ ......++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444556677778899999999999998875432211 12234567778888999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+++.+ +|..-.++..+-.+|...|++..|+..|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99998 577778899999999999999999999999998888766653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.017 Score=53.54 Aligned_cols=72 Identities=11% Similarity=0.291 Sum_probs=62.0
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+...|.++++.+.++++|.||++.+.... .+.-....|.+.| ..|+|. .|++. |+++ +++|.|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~~~G-----k~L~d~-~L~~~-gi~~-~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALLHRE-----TRLSSG-KLQDL-GLGD-GSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEEECC-----cCCCCC-cHHHc-CCCC-CCEEEEEee
Confidence 5799999999999999999999999999998876 4677778888888 779887 78876 8998 899999865
Q ss_pred C
Q 000589 164 L 164 (1403)
Q Consensus 164 ~ 164 (1403)
.
T Consensus 73 ~ 73 (78)
T cd01804 73 V 73 (78)
T ss_pred c
Confidence 3
|
midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.4 Score=53.49 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
..+.++|+.-|++++++- |.....-..++-.+-.+++.+++|++-++.|.+.+.........+..+ .+.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 347899999999999873 333333456788888999999999999999999998876554333322 22233333
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH----HHH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI----QTA 1166 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~----~~a 1166 (1403)
+-....+.+--..+|+..+...+.. .+......+-..||.+|+..++|..-...+++.-.-++.-.|.+.. +..
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 3334445555556666666555443 2233445566789999999999998888888877777665565532 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS-QNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1167 ~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a-~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+|..--..|..+++-..-...|++++.+-... .||...-. ..+-|.++ ...|++++|..-+-
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMH------lreg~fe~AhTDFF 255 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMH------LREGEFEKAHTDFF 255 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccc------cccchHHHHHhHHH
Confidence 555555677888888888888999999875543 36655432 33334444 55667776665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.64 Score=52.31 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+...|.+|+..|++++|+........+ .+...--.++.++.+++-|....++...+.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3445688999999999999988774333 23334456777888889999888888877432
Q ss_pred hHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYH----GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~----~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.++..||..+. ..+.+..|.-+|+..- +. .+.+..+++.+|.++..+++|++|...++.||...
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 12333444333 2334555555555433 22 23456678999999999999999999999999743
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~ 1208 (1403)
+.....+.|+-.+-...|.-.++..-+-.-+. ...+.|+.+.
T Consensus 238 -------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk 279 (299)
T KOG3081|consen 238 -------AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVK 279 (299)
T ss_pred -------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHH
Confidence 34466788888888888888777654433222 2345565544
|
|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.022 Score=52.25 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=62.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+.++|..+++.+.+.++|.+|++.|.... .+.-....|.++| ..|+|...|+++ ++++ +++|.|+..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~~~g-----~~L~d~~tl~~~-~i~~-g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYSG-----KQMNDDKTAADY-KLEG-GSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEEECC-----eEccCCCCHHHc-CCCC-CCEEEEEEE
Confidence 4789999999999999999999999999998876 4667778899888 788888888876 6888 899988764
|
Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. |
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.018 Score=51.77 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=60.0
Q ss_pred eCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecC
Q 000589 89 KTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAAL 164 (1403)
Q Consensus 89 ~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~ 164 (1403)
++++|..+++.+.++++|.+|++.|..... .......|.|+| ..|+|...|+++ |+++ +++|.|+-.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-~~~~~~~L~~~G-----~~L~d~~tL~~~-~i~~-~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG-IPPEQQRLIYNG-----KELDDDKTLSDY-GIKD-GSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT-STGGGEEEEETT-----EEESTTSBTGGG-TTST-TEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc-cccccceeeeee-----ecccCcCcHHHc-CCCC-CCEEEEEEec
Confidence 457788999999999999999999999876 667888999999 889999999999 8998 8899998765
|
There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.19 Score=54.29 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
.+...++..+|..|...|++++|++.|.++.... .........+.++-.+....+++.....++.+|-.+...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-- 105 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-- 105 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--
Confidence 4667889999999999999999999999988753 223557788889999999999999999999999988765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
|.+..........-|..+...++|..|.+.|-.+...+
T Consensus 106 ~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 106 GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 22222333344455667777899999999888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.023 Score=55.63 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=64.2
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
.++|.|++.+|..+.|.+.+.++|.+|++.|..... ..-....|.+.| ..|+|-..|+++ +|++ +++|.|+.
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~~~QrLi~~G-----k~L~D~~tL~dy-~I~~-~stL~l~~ 98 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPVAQQHLIWNN-----MELEDEYCLNDY-NISE-GCTLKLVL 98 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CChHHEEEEECC-----EECCCCCcHHHc-CCCC-CCEEEEEE
Confidence 589999999999999999999999999999998764 567789999999 889999999887 6888 88999875
Q ss_pred c
Q 000589 163 A 163 (1403)
Q Consensus 163 ~ 163 (1403)
.
T Consensus 99 ~ 99 (103)
T cd01802 99 A 99 (103)
T ss_pred e
Confidence 3
|
AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.7 Score=54.07 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000589 1034 PMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1034 ~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~ 1113 (1403)
.++...-.+.+++|..+..+-.+++|.+||.+.-.. -++..+|+...+|++-+.+.+.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~~------ 847 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLART------ 847 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHHh------
Confidence 345566778888888888888888888888764221 2345555555555543333221
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ-------------------EALKKNERLLGEEHIQTAVCYHALAI 1174 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le-------------------kAL~l~~~~~G~~~~~~a~~~~~LA~ 1174 (1403)
+.++++ .+-.+|.++...|-.++|.+.|. +|+++.++. .-++........+.
T Consensus 848 --Lpe~s~----llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 --LPEDSE----LLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAA 918 (1189)
T ss_pred --cCcccc----hHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHH
Confidence 223333 23345555555555555555442 333333322 22344444445555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 000589 1175 AFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1175 ~y~~~Gd~~eAi~~lkkA 1192 (1403)
-+...++.-+|++.+++|
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 666778888888888877
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.61 Score=52.11 Aligned_cols=209 Identities=11% Similarity=0.074 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1053 AGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1053 ~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
..+.++|+.-|++++++- |.....-..++-.+-.+++++++|++-+..|.+.+...+.....++... +.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence 357899999999999873 3333445677888899999999999999999999977766544433321 1222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH----
Q 000589 1133 MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK---- 1208 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~---- 1208 (1403)
.-....+.+--..+|+..|+..+..- +.......-..||.+|...++|.+-...+++...-++..-|.++....
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 22233444444556666665544321 112223344579999999999999888888877777766666654322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK--AHPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~--~~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
+.|..--++| ..+++...-..+|+ +++.+-. .||....+...-| +.|.+++|..-|=+|.+
T Consensus 192 EiYAlEIQmY------T~qKnNKkLK~lYe--qalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 192 EIYALEIQMY------TEQKNNKKLKALYE--QALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhHhhHhhhh------hhhcccHHHHHHHH--HHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 2222222233 56666655555666 7776655 5777776666665 66888888888777776
|
|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.027 Score=51.14 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=60.4
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|+|+.+.+. .++.+.++++|.+|++.+..... +....+.|.+.| ..|+|...|++. |+++ +++|.||.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~-i~~~~~~Li~~G-----k~L~d~~tL~~~-~i~~-~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK-ANQEQLVLIFAG-----KILKDTDTLTQH-NIKD-GLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC-CCHHHEEEEECC-----eEcCCCCcHHHc-CCCC-CCEEEEEE
Confidence 46899999885 58999999999999999998874 678889999988 789998888887 7888 99999885
|
hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=56.03 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTG---PMHRE-------VANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g---~~~p~-------~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
...+..-|.-++.+|+|.+|...|++|+...++..- |..|+ ....+.++++|+...|+|-++++.+...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999988776532 22333 23468899999999999999999999988
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1068 ~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.. +|....+|+..|..+...=+.++|..-|.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 76 6888999999999999999999999999999975
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.084 Score=60.61 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=93.6
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
..+..|..+-+-|.-|+...+|..|+..|.+.|..- -++....+.+|.+.|.+.+..|+|..|+.-+.+|+.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 344579999999999999999999999999998862 2333456789999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1073 CLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1073 ~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.|....+|+.-|.|++.+.++.+|...++..+.+.
T Consensus 149 -----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57888999999999999999999999988887653
|
|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.029 Score=52.29 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=61.8
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEe--eeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDL--VLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l--~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
++|+|+.+.|..+.+.+.++++|.||++.+.... .+....+.| .+.| ..|+|-..|+++ |+++ +++|.|+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G-----~~L~D~~tL~~~-gi~~-gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSR-----EVLQDGVPLVSQ-GLGP-GSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCC-----CCCCCCCCHHHc-CCCC-CCEEEEE
Confidence 6899999999999999999999999999998776 356667777 5556 789998888876 8888 8999888
Q ss_pred ecCC
Q 000589 162 AALY 165 (1403)
Q Consensus 162 ~~~Y 165 (1403)
....
T Consensus 75 ~~~~ 78 (80)
T cd01792 75 VQNC 78 (80)
T ss_pred EEcc
Confidence 6543
|
ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.034 Score=66.14 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhh
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD--TAHSYGNMALFYHGLNQTELALRHMSRALL-LLSLS 1115 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~--~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~-l~~~~ 1115 (1403)
.+.++...++.+|..|+|..|...+...=. .+...|...|+ ....++|||.+++++|.|.-+..+|.+|+. .+...
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999887764322 11111222233 334568999999999999999999999995 33222
Q ss_pred c-C--C------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000589 1116 S-G--P------DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1116 ~-g--~------d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
. | + ..-....+++|.|..|...|+.-.|.++|.++...+.+ ...+|..||.++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHH
Confidence 1 1 0 01124567899999999999999999999999988732 3456777877764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.26 Score=53.31 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 000589 1019 TLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT 1098 (1403)
Q Consensus 1019 ~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~ 1098 (1403)
+-++.-+.-++... ....+..++..+|..|...|++++|+..|.++.... ......+..+.++-.+....+++
T Consensus 17 ~~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 17 EKLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCH
Confidence 33444444444322 245778899999999999999999999999977652 22345677888889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1099 ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1099 ~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.....++.+|-.+... |.+..........-|..+...++|.+|-..|-.+..-.
T Consensus 90 ~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999988766 23333334455566777888999999999998876543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=7.8 Score=45.94 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..-+..|.+..-.|+-..|..+-.++-.+.. .+.+-. ++..-++.-...|+|+.|..-|+-.+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~--------- 148 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLD--------- 148 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhc---------
Confidence 33344456777778899999999888876642 233322 344456777788999999988876544
Q ss_pred ChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTA-HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~-~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|++- .-+..|-.--...|+.+.|..|.+++.... |...++...+-......|+|+.|+++........
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~-- 218 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK-- 218 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--
Confidence 34432 222233333467899999999999998753 4445555555566778999999999998876543
Q ss_pred HhCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQT--AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~--a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
..+++-... +..+..-+.... .-+...|.....++.++. ++..-+...-+..+ ...|+..++-
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlvPaav~AAral------f~d~~~rKg~ 283 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLVPAAVVAARAL------FRDGNLRKGS 283 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------CccchHHHHHHHHH------Hhccchhhhh
Confidence 222222222 222222222222 235677777777777652 23333333333444 7788988888
Q ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHhCChHHHHHHHHHHHHHhhcCCCCcc
Q 000589 1235 NAASTQKAIDILK--AHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETLPR 1287 (1403)
Q Consensus 1235 ~~l~~qkALei~~--~~p~~~~a~~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~ 1287 (1403)
.+++ ...+ -||+....|... +.|+. ++.-++++-.+..+.++|..
T Consensus 284 ~ilE-----~aWK~ePHP~ia~lY~~a-r~gdt--a~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 284 KILE-----TAWKAEPHPDIALLYVRA-RSGDT--ALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hHHH-----HHHhcCCChHHHHHHHHh-cCCCc--HHHHHHHHHHHHhcCccchH
Confidence 8887 5555 588888777665 34443 44446666555555555443
|
|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.046 Score=50.74 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=62.5
Q ss_pred ccEEEeCCCCce-eEEe-cCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEK-LELQ-LNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~-~~l~-~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+++.|.. +.+. +.+.++|.+|++.|.+.. .+.-....|.|.| ..|+|...|+++ ||++ +++|.|+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~-gi~~~~QrLi~~G-----k~L~D~~tL~~y-~i~~-~~~i~l~ 72 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELF-NVEPECQRLFYRG-----KQMEDGHTLFDY-NVGL-NDIIQLL 72 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHh-CCCHHHeEEEeCC-----EECCCCCCHHHc-CCCC-CCEEEEE
Confidence 368999999987 6894 899999999999999875 4777889999999 889999999887 8888 8888887
Q ss_pred ecC
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
..+
T Consensus 73 ~~~ 75 (78)
T cd01797 73 VRQ 75 (78)
T ss_pred Eec
Confidence 654
|
NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. |
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.044 Score=49.64 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=59.2
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|.|+.+++..+++.+.++++|.+|++.|..... +.-....|.++| ..|+|...|+++ |+++ +++|.|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~L~d~~~L~~~-~i~~-~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG-IPVEQQRLIYSG-----RVLKDDETLSEY-KVED-GHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEECC-----EECCCcCcHHHC-CCCC-CCEEEEEe
Confidence 46899999999999999999999999999988754 344456788887 789998888776 7888 88998874
|
Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.66 Score=50.06 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+...+|..+...|++++|+..++.++... .|.....-+-.+||.+...+|.+++|+..+...-. +.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 44567888899999999999999998542 23344566778999999999999999988875432 23
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..+......|.++...|+-.+|...|+++++.
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 45556678899999999999999999999986
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.9 Score=55.99 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
..+..||.+..+.|...+|++.|-+| |+| ..|...-......|.|++-++|+..|....+..+- .
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence 46888999999999999999988775 223 35677777888899999999998888765433210 0
Q ss_pred HHHHHHH---------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc
Q 000589 1121 PDVAATF---------------------INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM 1179 (1403)
Q Consensus 1121 p~~a~~~---------------------~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~ 1179 (1403)
.....+| ...|.-+...+.|+.|.-+|.. ..-+..||..+..+
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHHH
Confidence 1111111 1223333334444433333321 22355788888999
Q ss_pred CCHHHHHHHHHHHHHHH--HHH---------------hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 000589 1180 GAFKLSHQHEKKTYDIL--VKQ---------------LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKA 1242 (1403)
Q Consensus 1180 Gd~~eAi~~lkkAl~i~--~~~---------------lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkA 1242 (1403)
|+|..|....++|-.+. +.. .|-+-.-.++-+..|.. ++...|-+++-+.+++ .+
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~------~Yq~rGyFeElIsl~E--a~ 1305 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIE------YYQDRGYFEELISLLE--AG 1305 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHH------HHHhcCcHHHHHHHHH--hh
Confidence 99999999988875431 111 11110000111122223 3488888888888887 55
Q ss_pred HHHHhhChHHHHHHHHHHHhCChHHHHHHH
Q 000589 1243 IDILKAHPDLIHAFQAVAAAGGSGNSGASA 1272 (1403)
Q Consensus 1243 Lei~~~~p~~~~a~~~La~~G~~~eA~~~~ 1272 (1403)
+-+-+.|-....-+.-|....++++-.+++
T Consensus 1306 LGLERAHMgmfTELaiLYskykp~km~EHl 1335 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYKPEKMMEHL 1335 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 544445554444333333444444444443
|
|
| >cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.055 Score=50.13 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=59.7
Q ss_pred ccEEEeCCCCce--eEEecCCCChHHHHHHHhhhcC-cceeeeeeEeeeCCCCCCcccccccccccccc-ccCCCccEEE
Q 000589 84 YPVTVKTQSNEK--LELQLNPGDSVMDIRQFLLDAP-ETCFFTCYDLVLHTKDGSTHHLEDYNEISEVA-DITTGGCTLE 159 (1403)
Q Consensus 84 ~~v~v~~p~~~~--~~l~~~~~~~v~dv~~~l~~~~-~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~-~~~~~~~~l~ 159 (1403)
++|+|+.|++.+ +++.+.++++|.|+++-|.... ..+.-..-.|.|.| ..|.|-..|+++- .+.+ +-++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~G-----KiLkD~~tL~~~~~~~~~-~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSG-----KLLPDHLKLRDVLRKQDE-YHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcC-----eeccchhhHHHHhhcccC-CceEE
Confidence 689999999977 6666689999999999999874 34445777899999 8899999999883 4555 88999
Q ss_pred EEe
Q 000589 160 MVA 162 (1403)
Q Consensus 160 ~v~ 162 (1403)
||.
T Consensus 76 LV~ 78 (79)
T cd01790 76 LVC 78 (79)
T ss_pred EEe
Confidence 884
|
Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.19 Score=55.43 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---CChhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL---DHPDT-------AHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~---d~p~~-------~~a~~nLA~~~~~~G~~~eAl~~l~rAL 1109 (1403)
..++..-|+-++.+|+|.+|...|+.|+...+...-. ..|+. ...+.|++.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999987665322 23333 3457899999999999999999998888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1110 LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1110 ~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.. +|....+|+.-|.+....=+.++|..-|.++|++-
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 54 68889999999999999999999999999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=4 Score=51.12 Aligned_cols=59 Identities=29% Similarity=0.320 Sum_probs=31.8
Q ss_pred cChhhHHHHHHHHhhcCcCCceecCC---CCCeeeeecccccccccccCchhHHHhhhhc--CCCCCCCCC
Q 000589 577 WNEDFHSKVLEAAKRLHLKEHTVLDG---SGNVFKLAAPVECKGIVGSDDRHYLLDLMRV--TPRDANYTG 642 (1403)
Q Consensus 577 ~~~~~~~~~~~~a~~l~lk~H~v~~~---~~~~~~l~~s~e~kgi~G~DgR~YilDl~R~--~P~d~~~~~ 642 (1403)
+|++|.+-+..+-..---.+|.|+-. +|. .+-+...| +-+|-|.|-|-.. +|.|.+|.+
T Consensus 370 ~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~-i~e~s~le------~~~~~~~l~LCNSIGT~lD~kytd 433 (1189)
T KOG2041|consen 370 TNEKTVKTVTHFENMAFYREHCVLINRQDDGV-IPEYSTLE------NRSRVYFLQLCNSIGTSLDYKYTD 433 (1189)
T ss_pred cChhhhhhhcceeehheecccEEEEeccccCC-Ccchhhhh------cccceEEEeeecccCCcCCCCcce
Confidence 35555554443322223347888622 222 22333444 4458888877665 788888753
|
|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.058 Score=49.42 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=60.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+.++|..+.+.+.+.++|.+|++.|..... +.-.+..|.+.| ..|+|...|++. |+++ +.+|.++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-~~~~~q~L~~~g-----~~L~d~~~L~~~-~i~~-~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIFAG-----KQLEDGRTLSDY-NIQK-ESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC-CCHHHeEEEECC-----EECCCCCcHHHc-CCCC-CCEEEEEEE
Confidence 36899999999999999999999999999998764 455678888888 779998888875 7887 788888753
|
Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains) |
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.056 Score=49.19 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=55.0
Q ss_pred EEEeCC-CCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccc-cccccccCCCccEEEE
Q 000589 86 VTVKTQ-SNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNE-ISEVADITTGGCTLEM 160 (1403)
Q Consensus 86 v~v~~p-~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e-~~~~~~~~~~~~~l~~ 160 (1403)
|+|+++ +++.+.|.+.++++|.+|++.+..... +.-....|.++| ..|+|-.. |++. |+++ ++.|.|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g-ip~~~q~Li~~G-----k~L~D~~~~L~~~-gi~~-~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG-IPASQQQLIYNG-----RELVDNKRLLALY-GVKD-GDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC-CCHHHeEEEECC-----eEccCCcccHHHc-CCCC-CCEEEE
Confidence 589999 889999999999999999999988764 566778999999 78888644 4444 7888 777765
|
DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. |
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.076 Score=48.66 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=59.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|.|+.. +.+.+.+.++++|.||++.+..... +.-....|.+.| ..|+|...|++. |+++ +++|.|+..
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~Li~~G-----k~L~D~~tL~~~-~i~~-~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG-IDVEDQVLLLAG-----VPLEDDATLGQC-GVEE-LCTLEVAGR 70 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC-CCHHHEEEEECC-----eECCCCCCHHHc-CCCC-CCEEEEEEe
Confidence 36788884 6789999999999999999988764 667888999999 889999999885 7888 899999854
|
Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=5.8 Score=45.06 Aligned_cols=224 Identities=8% Similarity=0.000 Sum_probs=132.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELII----NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i----~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+|.-.....++++|+..|.+.+.- -++. -.+.-.+..+|+.+|...|++..--+......+.+.... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 4566666778888888888877654 1111 123345678999999999999887777777776665542 2
Q ss_pred HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1121 p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
|....+...|-. .-.....++.-+..+...++...+- .........-..+..+++..|.|.+|+....-.+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 444444333332 2233456777788877777765431 0111222334567888999999999999999888877765
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH------HhCChHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA------AAGGSGNSGASAN 1273 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La------~~G~~~eA~~~~e 1273 (1403)
- +.+.....+..-..+| ....+..++...+...+.+...-.-|....+...|- .-.+|.-|..+|-
T Consensus 159 D--DK~~Li~vhllESKvy------h~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~ 230 (421)
T COG5159 159 D--DKINLITVHLLESKVY------HEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFI 230 (421)
T ss_pred c--CccceeehhhhhHHHH------HHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHH
Confidence 2 2233222222222333 444555555544442222222223444444444443 5567888999998
Q ss_pred HHHHHhhcCCCC
Q 000589 1274 NSLNAALLGETL 1285 (1403)
Q Consensus 1274 kAL~~~~~G~~~ 1285 (1403)
+|++--..+..|
T Consensus 231 Ea~Egft~l~~d 242 (421)
T COG5159 231 EALEGFTLLKMD 242 (421)
T ss_pred HHHhccccccch
Confidence 888843344444
|
|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.09 Score=48.40 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=57.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcc-eeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPET-CFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t-~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+.+++..+.+.+.++++|.++++.|...... ..-....|.++| ..|+|...|++. |+++ +.+|.|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G-----~~L~d~~~L~~~-~i~~-~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSG-----KILKDDTTLEEY-KIDE-KDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECC-----EEccCCCCHHHc-CCCC-CCEEEEE
Confidence 468999999999999999999999999999987642 145667788888 889998888875 7888 5555544
|
RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.39 Score=46.21 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPM-HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYG 1086 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~-~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~ 1086 (1403)
.+..|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876643322 12456778899999999999999999999999998875 34444555555
Q ss_pred HHHHH
Q 000589 1087 NMALF 1091 (1403)
Q Consensus 1087 nLA~~ 1091 (1403)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.076 Score=41.40 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
++.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999977654
|
|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=47.99 Aligned_cols=78 Identities=9% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCCccccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCcc
Q 000589 77 KQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGC 156 (1403)
Q Consensus 77 ~~~~~~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~ 156 (1403)
+..+...++|.|+.+.+..+.+.+.++++|..|.+.+.+... .....+.|.++| .+|++...+.++ |+.+ +.
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g-i~~~~~rf~f~G-----~~L~~~~T~~~l-~m~d-~d 76 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG-LSMNSVRFLFDG-----QRIRDNQTPDDL-GMED-GD 76 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC-CCccceEEEECC-----eECCCCCCHHHc-CCCC-CC
Confidence 334446789999999999999999999999999999999865 457899999999 899999888888 7888 78
Q ss_pred EEEEEe
Q 000589 157 TLEMVA 162 (1403)
Q Consensus 157 ~l~~v~ 162 (1403)
+|.++.
T Consensus 77 ~I~v~l 82 (87)
T cd01763 77 EIEVML 82 (87)
T ss_pred EEEEEE
Confidence 888774
|
Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.48 Score=45.59 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLD-HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d-~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~ 1128 (1403)
....|+|.+|++.+.+............ ......++.++|.++...|++++|+..+++|+.+.+.. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876653322 12456678899999999999999999999999999886 44455555555
Q ss_pred HHHHH
Q 000589 1129 NVAMM 1133 (1403)
Q Consensus 1129 nLA~i 1133 (1403)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.44 E-value=4.3 Score=52.60 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=110.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMA 1089 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA 1089 (1403)
..+++..|+....+.+.. ||....+...-|.++.++|+.++|..+++ ++.. .+.++ -..+.-+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~----~~~~D---~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLE-ALYG----LKGTD---DLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhcc----CCCCc---hHHHHHHH
Confidence 456788888877777665 67777777778889999999999995443 3332 12232 33455688
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q 000589 1090 LFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169 (1403)
Q Consensus 1090 ~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~ 1169 (1403)
.+|..++++++|..+|++++.. .|. -..++.+=++|.+.+.|.+-.+ .|+++++. +|.+ +.+ .|
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~-~pk~-~yy--fW 148 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKN-FPKR-AYY--FW 148 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCcc-cch--HH
Confidence 8999999999999999999864 243 4445566667777776654332 34444432 2322 222 23
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1170 HALAIAFNCMGAFKLSHQ--HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~--~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.-+..++...-..+.+.. +.--|-..+++.+.... ... ..+.+..+-.....++++++|...+.
T Consensus 149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g--k~~---s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 149 SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG--KIE---SEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC--ccc---hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444444444444443 11111122222222220 111 11111112223477888999998885
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.5 Score=54.55 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
+.|.-|-.-|.-|+...+|..|+..|.+.|..- ..|..-.+..|.|.|.+.+..|+|..|+.-..+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 477788888999999999999999999998752 2344456778999999999999999999999999965
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|....+++.=|.++..+.++.+|..+.++.+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778899999999999999999999999887765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.087 Score=41.07 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
+|.+||.+|..+|+|++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.26 E-value=4.3 Score=48.32 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=106.3
Q ss_pred cHHHHHhhhhhhhh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 000589 977 ETSDILNLQPVVKH-SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055 (1403)
Q Consensus 977 ~~~dI~~l~pvvK~-~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~ 1055 (1403)
..++|..+..++-. .......+..+...+.+....|+++.|..++.++...... .......+....+.++...|+
T Consensus 124 ~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 124 VWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCC
Confidence 45555555433322 3335667889999999999999999999999987765211 111144567778899999999
Q ss_pred HHHHHHHHHHHHH-HHHHhc-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHHHH
Q 000589 1056 MAGAIMQQHKELI-INERCL-------------------------GLDHPDTAHSYGNMALFYHGL------NQTELALR 1103 (1403)
Q Consensus 1056 ~~eAi~~~~kAL~-i~er~l-------------------------g~d~p~~~~a~~nLA~~~~~~------G~~~eAl~ 1103 (1403)
..+|+..++..+. ...... .......+.++..+|...... +..++++.
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 9999999998887 332210 112234567788888888888 89999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc
Q 000589 1104 HMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1104 ~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~ 1137 (1403)
.|.+|+.+ +|....+++.+|..+...
T Consensus 280 ~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 280 YYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 99999976 355666788888776554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=94.23 E-value=10 Score=43.38 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC------C----HHHHHHHHHHHHHHHhcC--------------CHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM------H----REVANCCRYLAMVLYHAG--------------DMA 1057 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~------~----p~~a~a~~~LA~iy~~~G--------------~~~ 1057 (1403)
+.+-++++..|+..+|+.-++.=+..+....++. . .-.+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567889999999999999999999888876651 1 112333444555543322 122
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1058 GAIMQQHKELIINERCLG-LD-------------------HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1058 eAi~~~~kAL~i~er~lg-~d-------------------~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
.|..+...--...+.... ++ .+.....+..+.............+.++.+|+..+...
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-- 171 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-- 171 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh--
Confidence 333332222222222210 00 01111111111111122334556788899999887764
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
........+...||..|...|+|++|+.+|+.+...+.+ .........++..|..|+...|+.+..+.+.-
T Consensus 172 ~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 172 GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 224556677789999999999999999999999776643 12345566788889999999999887776543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.9 Score=53.49 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000589 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA-----GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGN 1087 (1403)
Q Consensus 1013 ~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~-----G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~n 1087 (1403)
...+|..+++.+... ....+...+|.+|..- .+.+.|+.+++.+..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456788888877665 3455667777777654 789999999999987322110 0112336788
Q ss_pred HHHHHHHCC-----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhC
Q 000589 1088 MALFYHGLN-----QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG---KMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1088 LA~~~~~~G-----~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g---~~deAl~~lekAL~l~~~~~G 1159 (1403)
||.+|.... ++..|+.+|.++-.+ .+ ..+.+.||.++..-. ++..|..+|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998743 778899999998764 22 345788898887665 578899999888763
Q ss_pred CCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCM----GAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~----Gd~~eAi~~lkkAl~i 1195 (1403)
....+++.+|.+|..- -+...|..+++++.+.
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 2345677888887653 4788999999998764
|
|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.14 Score=46.92 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=58.0
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+...|.++.+.+.++++|.||++.|.... .+.--.-.|.+.| ..|+|...|.+. ||++ ++++.|-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi~~G-----k~L~D~~tL~~y-gi~~-~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLKKWY-----TIFKDHISLGDY-EIHD-GMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEEeCC-----cCCCCCCCHHHc-CCCC-CCEEEEE
Confidence 5789999999999999999999999999998776 3555555677777 789998888876 7888 8888874
|
UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.1 Score=39.68 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|+++|.+|..+|++++|+.+|++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3579999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=21 Score=44.42 Aligned_cols=233 Identities=12% Similarity=-0.012 Sum_probs=139.2
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQ 1062 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~ 1062 (1403)
....-+++..|+. |.-++..++.+...|+.+.|+.+++.+++...+ .-..-+++.+|+++..+.+|..|..+
T Consensus 254 ~~Ll~~~~~~p~g--a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 254 KALKKYRKRYPKG--ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHhHHHHHhCCCC--ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444443 445566677788888899999999988883221 23466889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHH-HHHHH-HHHH--------HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH--------
Q 000589 1063 QHKELIINERCLGLDHPDTAHS-YGNMA-LFYH--------GLNQTELALRHMSRALLLLSLSSGPDHPDVA-------- 1124 (1403)
Q Consensus 1063 ~~kAL~i~er~lg~d~p~~~~a-~~nLA-~~~~--------~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a-------- 1124 (1403)
+....... +..++ |..++ .|+. ..|+-+.|..+++.+..+.... |.+-|...
T Consensus 326 ~~~L~des---------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKver 395 (546)
T KOG3783|consen 326 FDLLRDES---------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVER 395 (546)
T ss_pred HHHHHhhh---------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHH
Confidence 88877653 22222 22333 3332 2446667766666666554431 12212110
Q ss_pred --------------HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1125 --------------ATFINVAMMYQDIGK--MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1125 --------------~~~~nLA~iy~~~g~--~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
.-++.++.++..... .++.+ +...-.+...-.+..+...-+..+|.++..+|+...|..+
T Consensus 396 f~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred HhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 012333333332221 12222 2221111111123445556678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHH
Q 000589 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ-KGQAFNAASTQKAIDIL 1246 (1403)
Q Consensus 1189 lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~-~~eAi~~l~~qkALei~ 1246 (1403)
++.+.+- ......++.....+++.||.++ ..++. ..++..++. +|-+-.
T Consensus 472 f~i~~~~-e~~~~~d~w~~PfA~YElA~l~------~~~~g~~~e~~~~L~--kAr~~~ 521 (546)
T KOG3783|consen 472 FKIQVEK-ESKRTEDLWAVPFALYELALLY------WDLGGGLKEARALLL--KAREYA 521 (546)
T ss_pred HHHHHHH-HHhhccccccccHHHHHHHHHH------HhcccChHHHHHHHH--HHHhhc
Confidence 9988764 2223345556677888899888 55655 888888877 554444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.5 Score=50.30 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCc-------cHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 953 RNLCQKVGISVTARKYDFNAATPF-------ETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAF 1025 (1403)
Q Consensus 953 r~i~~k~Giql~~~~Y~f~~~~~f-------~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL 1025 (1403)
..++..+||+-...-|.|....|. .++.|..+ +.+..+. .....+..+.-....|++.+|...|..++
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~---ld~~~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al 161 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQF---LDKVLPA--EEEEALAEAKELIEAEDFGEAAPLLKQAL 161 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHH---HHHhcCh--HHHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 345677888766667777654332 22233332 3333333 34445567788899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000589 1026 SILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105 (1403)
Q Consensus 1026 ~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l 1105 (1403)
.. .++...+...|+.+|...|+.+.|...+...=.- ........+..--.++.......+...+-
T Consensus 162 ~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 162 QA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred Hh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 98 3455778899999999999999998877652111 00111111111011222222222222222
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCH
Q 000589 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAF 1182 (1403)
Q Consensus 1106 ~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~ 1182 (1403)
+++- .+|+...+-+.||..|...|++++|++.+-..++... |.+ .......|-.++...|.-
T Consensus 227 ~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~---~~~---d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 227 RRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR---GFE---DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---ccc---CcHHHHHHHHHHHhcCCC
Confidence 2211 2466667788999999999999999999877766532 111 122334455555556633
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.3 Score=46.09 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|.+++|+..+.... ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 345678889999999999999999998653 2334445566789999999999999998876543 23
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+...-..|.++...|+-++|+..|++|+...
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344556667999999999999999999999863
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.5 Score=53.34 Aligned_cols=108 Identities=21% Similarity=0.201 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
..+++.+|+....+.++- ||....+...-|..+.++|++++|..+++. ++. .+.+ .-.++..+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~----~~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYG----LKGT---DDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hcc----CCCC---chHHHHHHH
Confidence 346777887777776654 677777888889999999999999965543 332 1222 344577788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKL 1184 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~e 1184 (1403)
.+|.+++++++|..+|++++..+ |. -..+..+=.+|.+.++|.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 22 3334445556666666643
|
|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.12 Score=46.74 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=57.7
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
++|+|+.. +...++.+.++++|.++++.|..... +.-.+..|.++| ..|+|-..|+++ |+++ +++|.|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~l~d~~~L~~~-~i~~-g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG-VEPRDQKLIFKG-----KERDDAETLDMS-GVKD-GSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC-CChHHeEEeeCC-----cccCccCcHHHc-CCCC-CCEEEEec
Confidence 46889997 77789999999999999999988763 556678888888 678887777776 6888 88998875
|
BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.11 Score=39.57 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+++++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.8 Score=48.75 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAE----GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH----AGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 999 ~~l~~lG~~~~~~----G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~----~G~~~eAi~~~~kAL~i~ 1070 (1403)
...+.++..|... .+..+|..+|..+.+. ....+.+.||.+|.. ..++.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 5666677777643 3577888888854432 345677889999987 45999999999999875
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----cCC
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLN-------QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD----IGK 1139 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G-------~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~----~g~ 1139 (1403)
| ++.-..+..+||.+|..-. +...|+.+|.++-... ...+..+||.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 1 2222445778888887642 2336777777776542 34568889988865 358
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G 1180 (1403)
+.+|..+|.+|.+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 999999999998742 1 55677788 666555
|
|
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=12 Score=45.19 Aligned_cols=187 Identities=14% Similarity=0.000 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
|.+-..-.+.....|.++....++..|..+++++.-.... +......+.++..++.++.+.+..-.++.+.-+++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3344445566667899999999999999999887654322 22334456677788888888888888888888888776
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ-----TAVCYHALAIAFNCMGAFKLSHQ 1187 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~-----~a~~~~~LA~~y~~~Gd~~eAi~ 1187 (1403)
... ..+...+..-.++|..+..+|-.+.|+..+..|+....-..|-+... .+.++..-+..+ ...+++.+..
T Consensus 344 sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 553 22334456667889999999999999999999998764332221110 111221222222 4567888999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1188 ~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
++++|-+++.+. ..|....++.+.++..| ...|+.++
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~y------n~lGd~~e 457 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQY------NHLGDSPE 457 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHH------HhhcCchH
Confidence 999999998876 45778888888888877 77777654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.34 Score=51.67 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1014 LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM---AGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~---~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
|+.|.+.++..+.. +|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|....+++++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 44555555554444 455566777777766665444 44666666666655554433 4778889999999
Q ss_pred HHHHCC----CHHHHHHHHHHHHHHHH
Q 000589 1091 FYHGLN----QTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1091 ~~~~~G----~~~eAl~~l~rAL~l~~ 1113 (1403)
+|..++ +..+|..+|++|...++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 987654 44566666666665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=7.2 Score=45.51 Aligned_cols=223 Identities=14% Similarity=0.046 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+....-+.++.++++...+-. ..-..-..-..|..+|+..++|.+|+.+....+.-..+. .|.+.....+..=+..
T Consensus 102 ~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 345566777777777654310 001112233568889999999999999999988877765 4555666666667788
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH--
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPD-VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC-- 1168 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~-~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~-- 1168 (1403)
|+...+..+|...+.-|.-....++-+ |. .+..-..=|..+..-.+|..|-.||-+|.+-+.... ++.....+
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLK 253 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLK 253 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHH
Confidence 888999999999888888777666554 33 334444456777777999999999999998765432 22233333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA 1248 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~ 1248 (1403)
|..|..+....-+--.++-.-+.+++ .-| ....++..++..+.. ....+|..|+.-|. .-+..
T Consensus 254 YMlLcKIMln~~ddv~~lls~K~~l~----y~g----~~i~AmkavAeA~~n----RSLkdF~~AL~~yk-----~eL~~ 316 (411)
T KOG1463|consen 254 YMLLCKIMLNLPDDVAALLSAKLALK----YAG----RDIDAMKAVAEAFGN----RSLKDFEKALADYK-----KELAE 316 (411)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHh----ccC----cchHHHHHHHHHhcC----CcHHHHHHHHHHhH-----HHHhc
Confidence 44455554433332233333333333 112 223445555554422 45667777877776 33444
Q ss_pred ChHHHHHHHHH
Q 000589 1249 HPDLIHAFQAV 1259 (1403)
Q Consensus 1249 ~p~~~~a~~~L 1259 (1403)
.|-...-+..|
T Consensus 317 D~ivr~Hl~~L 327 (411)
T KOG1463|consen 317 DPIVRSHLQSL 327 (411)
T ss_pred ChHHHHHHHHH
Confidence 45444433333
|
|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.2 Score=46.79 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=52.8
Q ss_pred ccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccccccc--ccccccccCCCccEEE
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYN--EISEVADITTGGCTLE 159 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~--e~~~~~~~~~~~~~l~ 159 (1403)
....|.|++|+|..+...+.++++|++|++++........-.+|.|...-+ + ..|.+.. .|.++ |+.. .++|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P--r-~~l~~~~~~tl~e~-~l~p-~~~l~ 79 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP--R-RELTDEDSKTLEEA-GLLP-SATLI 79 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS--T-EECCSTTTSBTCCC-TTSS-CEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC--C-cCCCccccccHHHh-cCCC-CeEEE
Confidence 456899999999999999999999999999997665444333588864432 1 4555544 66666 5655 55555
Q ss_pred E
Q 000589 160 M 160 (1403)
Q Consensus 160 ~ 160 (1403)
|
T Consensus 80 v 80 (82)
T PF00789_consen 80 V 80 (82)
T ss_dssp E
T ss_pred E
Confidence 4
|
The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.16 Score=38.42 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+++.+|.+|+.+|++++|+.++++++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.2 Score=49.88 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy 1134 (1403)
.+..|.....+++...++.++...-.......+|=..|....+|+.-+.+.+..-.+- ..+-+....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHH
Confidence 3344455555555555554443222334556677778999999998888877654431 111233444567778888
Q ss_pred HH---cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Q 000589 1135 QD---IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM---------GAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1135 ~~---~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~---------Gd~~eAi~~lkkAl~i 1195 (1403)
.+ .|+.++|+..+..++.-. ......++..+|.+|..+ ...++|+.+|+++.++
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 88 899999999999876532 223345677777777543 2356777777777665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.6 Score=54.38 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG-LNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~-~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
|..+.....+.+..+.|...|.+|+. +.......|...|.+.+. .++.+.|...|++++..+ +.++
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~ 70 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH
Confidence 33444555555568888888888853 123455678888999777 567777999999999875 2233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
..+......+...++.+.|..+|++++... ........+|......-...|+.+.....++++.+.+
T Consensus 71 ---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 71 ---DFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 345555577889999999999999998753 1111134566677777777888888888887777654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.16 Score=41.38 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.++..+|.+|..+|++++|+..|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999997 3555667776664
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.18 Score=38.06 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.79 Score=49.01 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKM---DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG----AFKLSHQHEKKT 1192 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~---deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G----d~~eAi~~lkkA 1192 (1403)
+|..+..+++-|.++..+.++ .++..++++|+.-++..+.- .|....++.++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466788888999888877554 44656666655554443211 2666778999999998765 456778888888
Q ss_pred HHHHHHH
Q 000589 1193 YDILVKQ 1199 (1403)
Q Consensus 1193 l~i~~~~ 1199 (1403)
...|++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=11 Score=43.97 Aligned_cols=163 Identities=15% Similarity=0.058 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA----GDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1009 ~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~----G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
...+++..|...+..+-.. ........++.+|..- .+..+|..+|+.+... ....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHH
Confidence 3556777777777776552 1115667777777653 4678899988855432 33457
Q ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 000589 1085 YGNMALFYHG----LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG-------KMDTALRYLQEALKK 1153 (1403)
Q Consensus 1085 ~~nLA~~~~~----~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g-------~~deAl~~lekAL~l 1153 (1403)
.++||.+|.. ..++.+|..+|++|... | ++.-..+.+++|.+|..-. +...|+.+|.+|...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999887 45999999999999864 2 2222455778888877642 223677777777654
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~----~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
. ...+...||.+|.. ..++.+|..+|++|-+. .+ ..+..+++.++
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~~~~ 233 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLGLMY 233 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 2 44567888888765 34889999999998763 22 55566676443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.9 Score=55.10 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL-----NQTELALRHMSRALLLLSLSSGPDHPDVAATFIN 1129 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~-----G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~n 1129 (1403)
+...|..+++.+... ..+.+...+|.+|..- .+.+.|+.+|+.+..-++... +.....+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456788888887664 3456677888888754 689999999999987311110 0112335788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhC
Q 000589 1130 VAMMYQDIG-----KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG---AFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1130 LA~iy~~~g-----~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G---d~~eAi~~lkkAl~i~~~~lg 1201 (1403)
+|.+|.... ++..|+.+|.+|-+. ....+.+.||.+|.... ++..|.++|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998843 678899999988763 23456778898888765 678999999988753
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....+..+++.+|..| .....+...|..++.
T Consensus 358 ----G~~~A~~~la~~y~~G--~gv~r~~~~A~~~~k 388 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELG--LGVERNLELAFAYYK 388 (552)
T ss_pred ----CChHHHHHHHHHHHhC--CCcCCCHHHHHHHHH
Confidence 2346778888887554 345567777888777
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.13 Score=62.07 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
|..+-..+..++..+.|+.|+.+|.+|+++ +|..+..+.+.+..+...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 444555677788889999999999999998 7888889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.|..+.+|..-|.++...+++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4889999999999999999999999999888765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.093 Score=40.46 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000589 1062 QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALR 1103 (1403)
Q Consensus 1062 ~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~ 1103 (1403)
+|++||++ +|....+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 58889999999999999999999963
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=92.71 E-value=5.7 Score=47.98 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHHH
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL---------------------DHPDTAHSYGNMALFYHG 1094 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~---------------------d~p~~~~a~~nLA~~~~~ 1094 (1403)
+|....++..++.++..+|+++.|.++.++|+-.+++.+.. .+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999999998865321 222344566667777889
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000589 1095 LNQTELALRHMSRALLLLSLSSGPD-HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173 (1403)
Q Consensus 1095 ~G~~~eAl~~l~rAL~l~~~~~g~d-~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA 1173 (1403)
.|-+..|+++.+-.+.+ .+. +|. .++..|-....+.++|+-=+++++.......+. .........+.+|
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 99999999998877654 232 443 345556666677788877777776655421110 0011234567778
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHHH
Q 000589 1174 IAFNCMGAF---------------KLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1174 ~~y~~~Gd~---------------~eAi~~lkkAl~i~ 1196 (1403)
.++...++- +.|...+++|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888887 89999999998764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.2 Score=40.78 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAM 1048 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~ 1048 (1403)
..++.+|..|...|++++|+.+|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 45788999999999999999999999998 4555566666664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.086 Score=40.63 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 000589 1020 LFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060 (1403)
Q Consensus 1020 ~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi 1060 (1403)
+|++|+++ +|....+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788887 7888899999999999999999996
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.3 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.708 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.+++.+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999976
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.3 Score=37.05 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
+.++..+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=91.99 E-value=6.7 Score=47.41 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=110.4
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CCHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP---------------------MHREVAN 1041 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~---------------------~~p~~a~ 1041 (1403)
.+..++ +..|.+ ..+|+.++.++..+|++..|.+++++||-.++....+ .+.....
T Consensus 28 ~l~~ll-~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 28 ALINLL-QKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred HHHHHH-HHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 344444 233444 6789999999999999999999999999887754211 2334456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
++......+.+.|-+..|.++++-.+.+- ++ .+-..++..+=.+..+.++|+=-+.+++........ ....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~---~~~~ 175 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLD-----PD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR---NWLS 175 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----CC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh---hhhh
Confidence 66777788889999999999998877762 22 123445556666677888888777777765442100 0000
Q ss_pred HHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKM---------------DTALRYLQEALKKN 1154 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~---------------deAl~~lekAL~l~ 1154 (1403)
......+.+|.++...++- +.|...+++|+...
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 1224567788888888888 89999999999866
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=91.88 E-value=1 Score=52.40 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH-AGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~-~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
|....+.....+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|...|+.++..+ +
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~ 67 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence 444556666666689999999998632 12234567788888666 566666999999999876 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.....+.....++...++.+.|..+|++++... ......-.+|......-...|+++....+.+++.++.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333444555577889999999999999998642 1112134456666666677788888888888777754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=3.7 Score=43.82 Aligned_cols=164 Identities=23% Similarity=0.271 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Q 000589 954 NLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLA-----EGLLSEAYTLFSEAFSIL 1028 (1403)
Q Consensus 954 ~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~-----~G~~eeA~~~l~eAL~l~ 1028 (1403)
+-|+.+|.++..-.-+| .....|+|..-.....+...+..|..++. .+++..|++.+..+...
T Consensus 35 e~C~lLgdYlEgi~knF-----------~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~- 102 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNF-----------QAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA- 102 (248)
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-
Confidence 34666776665554444 34456677766666677778888877663 45788888888887663
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------
Q 000589 1029 QQVTGPMHREVANCCRYLAMVLYHA-----GD--MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG------- 1094 (1403)
Q Consensus 1029 ~~i~g~~~p~~a~a~~~LA~iy~~~-----G~--~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~------- 1094 (1403)
....+..++|.++..- ++ ..+|++|+.+|..+ ....+.++|+..|..
T Consensus 103 ---------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t 163 (248)
T KOG4014|consen 103 ---------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKT 163 (248)
T ss_pred ---------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcc
Confidence 2345667777776543 23 67888888888765 122344445444433
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000589 1095 -----------------LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD----IGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1095 -----------------~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~----~g~~deAl~~lekAL~l 1153 (1403)
..+.+.|..+..+|-++ ++ .++..|+..+|.. -.+-++|..+-.+|.++
T Consensus 164 ~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 164 NAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred cCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 24556666666666543 23 4456778887754 24688999999999998
Q ss_pred HHHHh
Q 000589 1154 NERLL 1158 (1403)
Q Consensus 1154 ~~~~~ 1158 (1403)
.+.+.
T Consensus 234 ~~e~~ 238 (248)
T KOG4014|consen 234 MEELR 238 (248)
T ss_pred HHHHH
Confidence 87653
|
|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.31 Score=58.61 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=62.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCc--ceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE--TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~--t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+||+..+..++|.|.++++|.||++.|..... .|.-....|.|.| +.|+|-..|+++ +|++++.++-||
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G-----kiL~Dd~tL~dy-~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSG-----KILSDDKTVREY-KIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECC-----EECCCCCcHHHc-CCCCCCEEEEEe
Confidence 46999999999999999999999999999988764 3777889999999 889999888886 788755555555
Q ss_pred ecC
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
-.+
T Consensus 75 ~k~ 77 (378)
T TIGR00601 75 SKP 77 (378)
T ss_pred ccC
Confidence 443
|
All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.34 E-value=37 Score=40.81 Aligned_cols=145 Identities=15% Similarity=0.069 Sum_probs=103.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQV-TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i-~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
....++.+.++++|..+-...+.-..-. .-..+--.+.+|+.+..+|-..|+...-..++..-+.. ..++.|....+
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qa 209 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQA 209 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHH
Confidence 3444556788999888777665432110 00112345778899999999999977776666665554 34566666667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+.|=..|...+.|+.|..+..++..-- ...+...+..++.+|.+..-+++|..|.+++-+|++..
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 777778888999999999988877654210 01234778889999999999999999999999999865
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.83 E-value=4.2 Score=44.47 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000589 1017 AYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN 1096 (1403)
Q Consensus 1017 A~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G 1096 (1403)
+++-|.+++++..++-...+++.-.- ++..-+..++..-++.+.+.+..+|. +..+++...
T Consensus 60 ~le~Y~kCielAa~Iq~i~~~e~k~~------------R~~a~~~s~~~l~~L~~~tk~S~dP~-------llYy~Wsr~ 120 (203)
T PF11207_consen 60 ALEKYSKCIELAAQIQHIKQKERKTD------------RFRALLHSYQELERLQEETKNSQDPY-------LLYYHWSRF 120 (203)
T ss_pred HHHHHHHHHHHHhcCeeechHhHHHH------------HHHHHHHHHHHHHHHHHHHccCCCcc-------HHHHHhhcc
Confidence 55566777777665544444332111 11222222333334444555566674 344455554
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000589 1097 QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176 (1403)
Q Consensus 1097 ~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y 1176 (1403)
.-++|+.-|.++- |....+.+...+.||..|. ..+.++|+.+|.++|++... +......++..||.+|
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHH
Confidence 4466776665543 3333455677888888776 67889999999999998743 3234467788999999
Q ss_pred HHcCCHHHHHHH
Q 000589 1177 NCMGAFKLSHQH 1188 (1403)
Q Consensus 1177 ~~~Gd~~eAi~~ 1188 (1403)
..+|+++.|.-+
T Consensus 189 ~~~~~~e~AYiw 200 (203)
T PF11207_consen 189 QKLKNYEQAYIW 200 (203)
T ss_pred HHhcchhhhhhh
Confidence 999999988643
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.18 Score=58.30 Aligned_cols=95 Identities=22% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
....+.-.+..|.++.|++.|..|+.+ +|..+..|...+.++..++....|+.-|..|+.+ +++
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~D 180 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPD 180 (377)
T ss_pred HHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccc
Confidence 333456667889999999999999988 7888999999999999999999999999999988 578
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.+..|-..+.....+|+|.+|..++..|..+
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888889999999999999999999998865
|
|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.3 Score=44.33 Aligned_cols=71 Identities=13% Similarity=0.288 Sum_probs=57.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
++|+|+.+++..+.+++.++++|..|.+..........-+.+.|.+.| .+|++...+.++ |+.+ +-.|.|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG-----~~L~~~~T~~~~-~ied-~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDG-----KRLDPNDTPEDL-GIED-GDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETT-----EEE-TTSCHHHH-T-ST-TEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECC-----EEcCCCCCHHHC-CCCC-CCEEEEE
Confidence 368899999999999999999999999999887654433899999999 889999888887 6777 6667664
|
SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A .... |
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.88 Score=42.36 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=48.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccc---cccccccccCCCccEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDY---NEISEVADITTGGCTLEM 160 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~---~e~~~~~~~~~~~~~l~~ 160 (1403)
..|.|++|+|+.++-.+.++++|.||++++..... .-...|.|...-+ + +.+++. ..|.++ |+.. .++|-|
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~-~~~~~f~L~t~~P--r-k~l~~~d~~~tL~e~-gL~p-~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT-DGNDPFTLNSPFP--R-RTFTKDDYSKTLLEL-ALLP-SSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc-CCCCCEEEEeCCC--C-cCCccccccCCHHHC-CCCC-ceEEEE
Confidence 57899999999999999999999999999944332 2235687865432 1 455543 346665 5544 555544
|
Present in FAF1 and Shp1p. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.23 E-value=36 Score=45.06 Aligned_cols=173 Identities=15% Similarity=0.077 Sum_probs=106.7
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
+......|..+|...++.|...+|++.|-+| ++| ..|...-.+..+.|.|++-+.|+.-|-.-.+..
T Consensus 1100 ~~n~p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred hhCChHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 3444567788999999999999999988775 222 346666677778888888888887765543221
Q ss_pred cCCCChhHHHHH---------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSY---------------------GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1074 lg~d~p~~~~a~---------------------~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
. -..+.+.+| ...|.-++..+.|+.|.-+|.. ..-+..||.
T Consensus 1167 ~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~ 1228 (1666)
T KOG0985|consen 1167 Y--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLAS 1228 (1666)
T ss_pred c--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHH
Confidence 0 001111111 1234444445555444333322 233677889
Q ss_pred HHHHcCCHHHHHHHHHHHHHH--HHH---------------HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1133 MYQDIGKMDTALRYLQEALKK--NER---------------LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l--~~~---------------~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.+..+|+|+.|....++|-.. ++. ..|-+-.-.+.-+-.|...|...|-|++-+.+++.++-+
T Consensus 1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 999999999999988877432 111 112111112334556778888889888888888877765
Q ss_pred HH
Q 000589 1196 LV 1197 (1403)
Q Consensus 1196 ~~ 1197 (1403)
-+
T Consensus 1309 ER 1310 (1666)
T KOG0985|consen 1309 ER 1310 (1666)
T ss_pred hH
Confidence 44
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.38 Score=58.20 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
-+-|.-++.-+.|+.|+.+|.+||++ +|..+..+.+.+..+...++|..|+.-+.+|+++ .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34456677788999999999999998 5777888889999999999999999999999975 5889
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|+.-|.++...+++.+|+..|+....+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999998877654
|
|
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.95 E-value=4.3 Score=47.68 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH-----------------
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA----------------- 1057 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~----------------- 1057 (1403)
...+..+...|+-.+.+++++.|...|.+|..++..+||..|.+...+++..|..++..+++.
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e 117 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEEE 117 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Confidence 344677888999999999999999999999999999999999999999999999988766554
Q ss_pred ---------------HHHHHHHHHHHHHHHhc------CC---CCh--h-------------------------------
Q 000589 1058 ---------------GAIMQQHKELIINERCL------GL---DHP--D------------------------------- 1080 (1403)
Q Consensus 1058 ---------------eAi~~~~kAL~i~er~l------g~---d~p--~------------------------------- 1080 (1403)
++..+|+.-+...+... +. ..+ +
T Consensus 118 ~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~~e~e~dt~k~~wE~Le~sr~~~~~~~~s~~~~qe~k~ 197 (400)
T KOG4563|consen 118 VEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPAAEDEVDTMKLAWEELETSRVIADKKSESLEAEQEGKG 197 (400)
T ss_pred hccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCccccchhhhhhhhhhhhhhhccccchhhhcccccccccc
Confidence 33344444333322110 00 000 0
Q ss_pred -HHHHHH-HHHHHH-------HHCCCHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHH--
Q 000589 1081 -TAHSYG-NMALFY-------HGLNQTELALRHMSRALLLLSLSSGPDHP-DVAATFINVAMMYQDIGKMDTALRYLQ-- 1148 (1403)
Q Consensus 1081 -~~~a~~-nLA~~~-------~~~G~~~eAl~~l~rAL~l~~~~~g~d~p-~~a~~~~nLA~iy~~~g~~deAl~~le-- 1148 (1403)
.+..|. .++..+ ...|+|+.|+....+++.+.+..+..... .++..+.+++......-.+++...+|.
T Consensus 198 ~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~il~~~~~~s~~~Ee~~~~~~~~ 277 (400)
T KOG4563|consen 198 DLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVDILCSAAESSLEREEIESSFSDT 277 (400)
T ss_pred chhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhhhccccccchhHHHHHHHHHHHh
Confidence 000110 111111 24678999999999999988766544333 344455555554444444444444433
Q ss_pred -HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1149 -EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1149 -kAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
.+|-..+...-++.......-+....+.....+.++++.++++++-..
T Consensus 278 KnvLi~~e~Ev~~~~~k~~d~~~~es~~~~~~~elee~ip~leq~i~d~ 326 (400)
T KOG4563|consen 278 KNVLIEREREVKDDLEKGVDDNFRESECLSELKELEEMIPELEQAILDA 326 (400)
T ss_pred hhHHHHHHHhhcccccccccccccchhHHHhhhhHHhHHHHHHHHHHHh
Confidence 333333322222222222222345566666677788888887776543
|
|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.6 Score=40.31 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=37.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
..|.|++|+|+.++-.+.++++|+||++++...... -..|.|...
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~ 47 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTS 47 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeC
Confidence 368999999999999999999999999999765422 566777754
|
The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.34 E-value=11 Score=43.44 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA 1124 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a 1124 (1403)
.-+.-....|++.+|...+..++... ++...+...|+.+|...|+.+.|...+...=.-.. .+.....
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l 206 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGL 206 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHH
Confidence 34555678899999999999999873 45567788899999999999999887765211000 0000001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.+...+..-....++..+.. +.+. ..|+...+.+.||..|...|+++.|.+++-. ++++..|.++
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~----~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~---~l~~d~~~~d 271 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQ----RRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLLA---LLRRDRGFED 271 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHH----HHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhcccccC
Confidence 11111111111222222111 1111 2355667888999999999999999988754 3444444444
Q ss_pred HHH
Q 000589 1205 SRT 1207 (1403)
Q Consensus 1205 ~~t 1207 (1403)
...
T Consensus 272 ~~~ 274 (304)
T COG3118 272 GEA 274 (304)
T ss_pred cHH
Confidence 333
|
|
| >cd01770 p47_UBX p47-like ubiquitin domain | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.5 Score=40.89 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=40.2
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
.-.|.|.+|+|+.++..++.+++|.||++++.......-...|.|...
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~ 51 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTA 51 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecC
Confidence 347899999999999999999999999999997654334578888754
|
p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. |
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.76 Score=42.34 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred CceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecC
Q 000589 93 NEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAAL 164 (1403)
Q Consensus 93 ~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~ 164 (1403)
+..++|.+.++++|.+|++.|..... +.-....|.|.| ..|+|-..|+++ ++.+ +++|.|+..+
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~g-ip~~~q~L~~~G-----~~L~d~~tL~~~-~i~~-g~~l~v~~~~ 70 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETG-MPAGKQKLQYEG-----IFIKDSNSLAYY-NLAN-GTIIHLQLKE 70 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEECC-----EEcCCCCcHHHc-CCCC-CCEEEEEEec
Confidence 46788999999999999999988764 777889999998 789998888877 6888 8899888653
|
SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. |
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.77 E-value=33 Score=41.56 Aligned_cols=222 Identities=11% Similarity=0.012 Sum_probs=131.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 000589 1048 MVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATF 1127 (1403)
Q Consensus 1048 ~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~ 1127 (1403)
+.....+...+|-.+..+--.......|.|-..........|.++....++..|..++.+++-.+.. +........++
T Consensus 239 wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVL 316 (482)
T KOG4322|consen 239 WMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVL 316 (482)
T ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHH
Confidence 3334444444444333332223333456666667778888999999999999999999988755433 22334567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 000589 1128 INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRT 1207 (1403)
Q Consensus 1128 ~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t 1207 (1403)
..++.++..-+.--.+..+.-.++..+.+.. .....+..-..||......|-.+.|+..+..|+....-.-|-++.
T Consensus 317 L~~ae~~~~g~~a~l~lplaL~~~~~~sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr-- 392 (482)
T KOG4322|consen 317 LTIAEARESGDTACLNLPLALMFEFKRSEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR-- 392 (482)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHHHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc--
Confidence 8888888888888888888888887776542 123344556678888999999999999999998765543332211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCC---hHHHHHHHHHHHH
Q 000589 1208 KDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGG---SGNSGASANNSLN 1277 (1403)
Q Consensus 1208 ~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~---~~eA~~~~ekAL~ 1277 (1403)
+.++...+.++.-...-....+++.+...++ +|-.++. -|.....+.+-++ ..|+ -+++...|++++.
T Consensus 393 ara~fvfanC~lA~a~s~~~e~ld~~~~~L~--~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 393 ARAIFVFANCTLAFALSCANESLDGFPRYLD--LAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred ceeEEEEEeeeecchhhhhhhhHHhhHHHHH--HHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 1111111111111111123344555555555 4444443 3444444444444 2233 4456666777665
|
|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.71 Score=55.96 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=67.7
Q ss_pred ccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..+.|+||+|.. +.+++|..+.+|.+++..++... .|+--...|.|.| .+|.|-.+|... ||++ |++++||
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIfaG-----rILKD~dTL~~~-gI~D-g~TvHLV 84 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIYAG-----RILKDDDTLKQY-GIQD-GHTVHLV 84 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeeecC-----ccccChhhHHHc-CCCC-CcEEEEE
Confidence 568899999988 99999999999999999999998 6888899999999 899999998876 8999 9999999
Q ss_pred ecCC
Q 000589 162 AALY 165 (1403)
Q Consensus 162 ~~~Y 165 (1403)
-+-.
T Consensus 85 ik~~ 88 (493)
T KOG0010|consen 85 IKSQ 88 (493)
T ss_pred eccC
Confidence 7644
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.31 E-value=59 Score=41.05 Aligned_cols=193 Identities=14% Similarity=0.067 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 000589 1035 MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~ 1114 (1403)
..+.....+......-...|+++...-+|++++.-+ ...-..+.+.+......|+.+-|-..+.++..+.
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-- 361 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-- 361 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--
Confidence 344445556666666778899999999999888764 2344567788888888899999998888888764
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1115 ~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
++....+...-|.+....|++..|...|++...-+ |....+-..-+......|+.+.+.. +.+.+.
T Consensus 362 -----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s 427 (577)
T KOG1258|consen 362 -----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELYS 427 (577)
T ss_pred -----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence 23344445566777888999999999999877643 3444444455566677888887775 222222
Q ss_pred HHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1195 ILVKQLGEEDSRT-KDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1195 i~~~~lg~~~~~t-~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
... -|..+... ...+...+.+. ..-.++.+.|..++. ++++++...-.....+..+.
T Consensus 428 ~~~--~~~~~~~i~~~l~~~~~r~~-----~~i~~d~~~a~~~l~--~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 428 SIY--EGKENNGILEKLYVKFARLR-----YKIREDADLARIILL--EANDILPDCKVLYLELIRFE 485 (577)
T ss_pred Hhc--ccccCcchhHHHHHHHHHHH-----HHHhcCHHHHHHHHH--HhhhcCCccHHHHHHHHHHH
Confidence 211 12233322 22233333332 256677788888887 77777766666666666665
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=88.30 E-value=22 Score=40.31 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG-LNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~-~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
+..+|.++.+.++|++++.+.++++... ..-+..-.+.|+.+|-. .|....+.+.+.....-.. +..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 4678999999999999999999998862 12233344455555522 2333333333322222111 11111
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhCCC--c-HHHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKM-DTALRYLQEALKKNERLLGEE--H-IQTAVCYHALAIAFNCM-----G-----AFKLSHQ 1187 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~-deAl~~lekAL~l~~~~~G~~--~-~~~a~~~~~LA~~y~~~-----G-----d~~eAi~ 1187 (1403)
...... . ....+. ++=......++.+....+-+. . ......+...|..|... | -.+.|..
T Consensus 74 ~~~~~i----~--~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 KQVKLI----K--DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 111111 0 001111 122233444444443322111 1 11222223334443321 1 2378999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1188 ~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.|++|+.+....+++.||.......+.+.+| +...++.++|+.+..
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~-----yei~~~~~~A~~ia~ 193 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFY-----YEILNDPEKAIEIAK 193 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH-----HHTSS-HHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHH-----HHHcCChHHHHHHHH
Confidence 9999999999999999999888888888776 366788888888777
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.19 E-value=27 Score=43.44 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHH-HHHH--------hcCCHHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC-CRYLA-MVLY--------HAGDMAGAIMQQHKE 1066 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a-~~~LA-~iy~--------~~G~~~eAi~~~~kA 1066 (1403)
....++++|..+..+.+|..|...+....+.. +...+ |..++ -|+. ..|+-+.|..+.+..
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~des---------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDES---------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 35678999999999999999999988776652 12222 22333 2332 234556666665555
Q ss_pred HHHHHHhcCCCChh--------------------H--HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1067 LIINERCLGLDHPD--------------------T--AHSYGNMALFYHGL--NQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1067 L~i~er~lg~d~p~--------------------~--~~a~~nLA~~~~~~--G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
..+.... |...|- . +..|..++.++..- ....+.+ ++..-+...--.+..+
T Consensus 373 ~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd 447 (546)
T KOG3783|consen 373 EELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDD 447 (546)
T ss_pred HHHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchH
Confidence 4443331 111111 0 01233444443221 1222222 2221111111113334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGA-FKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd-~~eAi~~lkkAl~i 1195 (1403)
..--+..+|.++..+|+-..|..+|..+++- +.....++-..+.+++.||.+|..+|. ..+|..++.+|-+.
T Consensus 448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4555777899999999999999999998876 233334556678899999999999999 99999999998664
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=88.18 E-value=52 Score=37.37 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER----CLG 1075 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er----~lg 1075 (1403)
.+..+++++.+.++|++++.++.+++... ......=.+.|+.+|- ..+.-.+.++++... ..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayK------n~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYK------NVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHH------hccccchHHHHhhhhHhhhhcc
Confidence 45678999999999999999999998871 1122333444555542 223333333322211 111
Q ss_pred CCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhhcCCC--CHHH-HHHHHHHHHHHHHc----------CCHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQT-ELALRHMSRALLLLSLSSGPD--HPDV-AATFINVAMMYQDI----------GKMD 1141 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~-~eAl~~l~rAL~l~~~~~g~d--~p~~-a~~~~nLA~iy~~~----------g~~d 1141 (1403)
..++.... .+-....+. ++=...+..++.+....+-+. .+.. +..+-..|..|... .-.+
T Consensus 70 ~~~~~~~~------~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~ 143 (236)
T PF00244_consen 70 KGNEKQVK------LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAE 143 (236)
T ss_dssp TTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHH
Confidence 11111111 110001111 222344555555554433221 2222 22222234444322 1247
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1142 TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC-MGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1142 eAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~-~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
.|...|++|+.+....+.+.+|.......+.+..|+. +|+.++|++..++|++-....++
T Consensus 144 ~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 144 KALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999998899999998888888887755 89999999999999887665543
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=40 Score=42.49 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHK------ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~k------AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
..+|.++...|.|.||..+|.+ |++++. -.-++.++.-+...|..++-..+.++--+-...+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~-- 703 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI-- 703 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--
Confidence 3577888889999999988875 333331 1123456666677777666666655544433322
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRY------LQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~------lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
..|.. -|.++...|+.++|+.. .+-++++..++- ......+..++..+.....+.-|.+.|++
T Consensus 704 -kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 704 -KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred -CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 22332 36677888888888764 344455444321 12223344445555555555555544443
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.53 E-value=17 Score=41.50 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy 1134 (1403)
.-++-++-+.+.++-.+...| ..+...++.|+|.+|.+.++.+.+.+.+.+.+.-.... .-..++.-+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh
Confidence 345556666666665555433 35678899999999999999999999998887654433 23456666778888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
..+.-..+.++.....++ + |.+....-..-...|...+...+|.+|-.++-..+..|.
T Consensus 166 ~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 776655555554444333 2 222222222223345556666778887777776665543
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=87.35 E-value=24 Score=43.56 Aligned_cols=179 Identities=11% Similarity=-0.010 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM-------AGAIMQQHKELIINE 1071 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~-------~eAi~~~~kAL~i~e 1071 (1403)
..+..+|..++..++|+.|...|..+..-+.. +.--...+.++-..|.+++..+.. ++...+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 34566899999999999999999998876542 111223455666666666666643 477888888888887
Q ss_pred HhcC---CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1072 RCLG---LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD---VAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1072 r~lg---~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~---~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
+... ........+....+.++...+.+.+|...+-++..... ..... .+-.+-.+|.+|
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~----------- 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY----------- 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh-----------
Confidence 7321 12235566777788888899999888887777665421 00111 334444455554
Q ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1146 YLQEALKKNERLLG-EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G-~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
..+.......+ ......+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 352 ---~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000000000 00123344444556789999999999999999999876
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.66 E-value=17 Score=41.64 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
..+........-++-++-+.+.++-.+...| ..+.+.+..++|..|.+.++.+.+.+++.+.+.-...+ .-..+..
T Consensus 80 D~~~~n~l~kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~ 155 (412)
T COG5187 80 DRGRMNTLLKKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVF 155 (412)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhH
Confidence 3344443344456677777777777665443 34678999999999999999999999999887654322 2234566
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.+-..||.+|..+.-..+.++.....++ + |.|....-......|.......+|.+|-.++-.++..+.
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 6777888888665545555544444333 2 333333333344456666777788888888877776543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.2 Score=54.65 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=82.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
++.-|.++...|+...|..++.+|+.... ......+.+||.++..-|-...|-.++.++|.+...
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-------- 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-------- 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc--------
Confidence 33445555678999999999999986431 122334779999999999999999999999998621
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
....++.+|++|..+.+.+.|++++++|++. .++.+.....+..+
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL-----TTKCPECENSLKLI 719 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHH
Confidence 2235678999999999999999999999984 34455444444333
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.44 E-value=66 Score=36.73 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHHCC--------------CHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD---H-------PDTAHSYGNMALFYHGLN--------------QTE 1099 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d---~-------p~~~~a~~nLA~~~~~~G--------------~~~ 1099 (1403)
+.+..+|+..|+..+|+..+++=+..+....+.. . .-.+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567889999999999999999988888776551 1 111223445565554432 234
Q ss_pred HHHHHHHHHHHHHHhhcC-CC-------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1100 LALRHMSRALLLLSLSSG-PD-------------------HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1100 eAl~~l~rAL~l~~~~~g-~d-------------------~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
.|..+...-......... ++ .+.....+..+.........-...++++.+|+..+....
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 454444443444444320 01 000011111111111123345577889999998887642
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.......+...+|.-|...|++++|+.+++.+...+++. .-..-....+..|..++ ...|+.+..+..
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca------~~~~~~~~~l~~ 240 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA------KRLGDVEDYLTT 240 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH------HHhCCHHHHHHH
Confidence 245566778899999999999999999999997776642 11222333444444444 566666665543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
Probab=86.41 E-value=1 Score=39.34 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITT 153 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~ 153 (1403)
+.|.|+.++ ..+.+.+.++++|.+|++.|..... +.-.+..|.++| ..|+|-..|+++ |+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~-~~~~~~~L~~~g-----~~L~d~~tL~~~-~i~~ 62 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG-IPVEQQRLIYKG-----KVLEDDRTLADY-NIQD 62 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEECC-----EECCCCCCHHHc-CCcC
Confidence 468999999 7899999999999999999987754 344567888888 678887666655 3443
|
Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.16 E-value=7.2 Score=36.19 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
.+....+.|.-++.+.+.++|+..+.++++.. .+.++...++..|..+|...|+|.+++.+..+=+.+.+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666777888889999999999999999874 3356788899999999999999999999998888887654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.97 E-value=87 Score=39.69 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1004 MGKVQLAEGLLSEAYTLFSE------AFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~e------AL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
++..+..+|+|.+|..+|.+ |++++.. .-++.+++-|...|.-++-..+.++--.....+ .
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---k 704 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---K 704 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---C
Confidence 34455556666666666643 3333221 124556677777777777666666544433222 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHM------SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l------~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
.|.. -|..+...|+.++|+.+. .-++++.+++ +......+-.++..+..+..+.-|-+.|++.=
T Consensus 705 ePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 705 EPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred CcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 2322 356677788888887653 2333333332 11122334444444445555555554444322
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHHHhhcH
Q 000589 1152 KKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK-DSQNWMKTFKMRELQMNVQKQK 1230 (1403)
Q Consensus 1152 ~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~-~a~~~La~l~~r~~~~~~qg~~ 1230 (1403)
+. ..+-......+++++|....++ ||... ..+.-.+++ .....++
T Consensus 775 D~----------------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqw------LAE~DrF 820 (1081)
T KOG1538|consen 775 DL----------------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQW------LAENDRF 820 (1081)
T ss_pred cH----------------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHH------hhhhhhH
Confidence 11 1233444556677766654432 33322 122223333 3666777
Q ss_pred HHHHHHHH
Q 000589 1231 GQAFNAAS 1238 (1403)
Q Consensus 1231 ~eAi~~l~ 1238 (1403)
++|...+.
T Consensus 821 eEAqkAfh 828 (1081)
T KOG1538|consen 821 EEAQKAFH 828 (1081)
T ss_pred HHHHHHHH
Confidence 77776665
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.91 E-value=7.4 Score=36.11 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
....-|.-++...+.++|+..+++++... .+.++...++-.|..+|...|+|.+++.+...=+++..+.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666778899999999999999764 3457788889999999999999999999988888877654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=85.84 E-value=9.5 Score=40.85 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1012 GLLSEAY-TLFSEAFSILQQVTGPMHREVANCCRYLAMVLY-----HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1012 G~~eeA~-~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~-----~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
|+|-+++ .-|+.|..+++.....+ ..+...+.+|..++ ..++...|++++..+... ....+.
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC 108 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQAC 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHH
Confidence 3344443 34666666665544332 34455666666554 346788999999988763 345567
Q ss_pred HHHHHHHHHC-----C--CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----------------------
Q 000589 1086 GNMALFYHGL-----N--QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD---------------------- 1136 (1403)
Q Consensus 1086 ~nLA~~~~~~-----G--~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~---------------------- 1136 (1403)
.++|.+++.- + +..+|++++.+|-.+ ....+.++|..+|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 7888888742 2 367889999888753 122334444444443
Q ss_pred --cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHH
Q 000589 1137 --IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM----GAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1137 --~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~----Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
..+.+.|.++--+|-++ ....+..|+.+.|..- ++-++|..+-..|.+|.+..
T Consensus 179 ~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 35667777777666654 2344566777776542 36788999999998887654
|
|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
Probab=85.69 E-value=2 Score=39.49 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeee---CCCCCCccccccccccccccccCCCccEEEEE
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVL---HTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~---~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+|+|+.- +..+++.+.++++|.|+++.|..... +.-..-.|.+ .| ..|+|...|+++ ++++ +..|.|+
T Consensus 2 ~i~vk~~-g~~~~v~v~~~~Tv~~lK~~i~~~tg-vp~~~QKLi~~~~~G-----k~l~D~~~L~~~-~i~~-g~~i~lm 72 (74)
T cd01813 2 PVIVKWG-GQEYSVTTLSEDTVLDLKQFIKTLTG-VLPERQKLLGLKVKG-----KPAEDDVKISAL-KLKP-NTKIMMM 72 (74)
T ss_pred EEEEEEC-CEEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEeecccC-----CcCCCCcCHHHc-CCCC-CCEEEEE
Confidence 5777774 56689999999999999999999864 6666677775 44 678899999988 7887 7777765
|
The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.66 E-value=34 Score=40.71 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000589 1014 LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYH 1093 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~ 1093 (1403)
.+.-+.+|++|++. .+++..+...|..++ ....+-++...-.++++... +..+.....|...-...+
T Consensus 47 ~E~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 34556677777776 344455444444444 45556677777777777652 344556666665555555
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPD----------HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d----------~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
..-.+......|.+++.......... ......++.++...+.+.|..+.|+..++..++++
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66778999999999998776554332 23466778888999999999999999999999876
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.53 E-value=54 Score=39.06 Aligned_cols=126 Identities=9% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1057 ~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
+.-+.+|++|+.. .+++......|..++ ....+.++..+-+++++.. .+..+.+...|...-.....
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhc
Confidence 3444555555554 234444444444444 4555777777777777754 13345555555555444455
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1137 IGKMDTALRYLQEALKKNERLLGEE----------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~~G~~----------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.-.++.....|.+++.......... ......++..++..+...|-.+.|+..++-.+++
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 6678899999999998876554332 2345667788899999999999999999988876
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.44 E-value=39 Score=42.65 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..+.|-|.-+.+..+|..|+++|...+..... ...+...+....+|+.+|..+.+.+.|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 44556677777888888888888888775422 1123445677788888888888888888888888653
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=84.98 E-value=45 Score=41.24 Aligned_cols=130 Identities=14% Similarity=-0.075 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT-------ELALRHMSRALLLLS 1113 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~-------~eAl~~l~rAL~l~~ 1113 (1403)
..+..||.+++.+++|+-|...|+-+..-+... .--...+.++-..|.+++..+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 356789999999999999999999887765321 00112344555566666666643 477788888888877
Q ss_pred hhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHH
Q 000589 1114 LSSG---PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ---TAVCYHALAIAF 1176 (1403)
Q Consensus 1114 ~~~g---~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~---~a~~~~~LA~~y 1176 (1403)
.... ........+....+.++...+.+.+|...+-+...... ..... .+.++..+|.+|
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh
Confidence 6321 12235566777788888999999888887766665421 01122 455556666666
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=84.95 E-value=78 Score=36.18 Aligned_cols=186 Identities=11% Similarity=0.026 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH-AGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~-~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
+..++++.-+.++|++++.+..+++.+.. + ......-.+.|..+|-. .|....+...... ++..+...|. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 45678888899999999999999877521 0 01122334445555532 3444445444433 2221111111 1
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC--CHH-HHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD--HPD-VAATFINVAMMYQDI-----G-----KMDTALRY 1146 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d--~p~-~a~~~~nLA~iy~~~-----g-----~~deAl~~ 1146 (1403)
... .+..-|. ..=-++=..++...+.+....+-+. .+. ....+-..|..|+.+ | -.+.|...
T Consensus 76 ~~~----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DHV----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 110 1111111 0011233455666666665554432 121 222222234443322 2 15689999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHH
Q 000589 1147 LQEALKKNERLLGEEHIQTAVCYHALAIAFNC-MGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1147 lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~-~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
|++|+++....+.+.||.......|.+..|+. +++.++|.+..++|++-....
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ 204 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 204 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999998877788899888888888877665 699999999999888765443
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.2e+02 Score=44.32 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=107.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
+.....++.|++.|++....|+++.|..++-.|.+.. ...++...|..++..|+-..|+.++++.+....
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4566779999999999999999999999999887762 456888999999999999999999999997653
Q ss_pred HhcCC---CCh------hHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-----HHHHH
Q 000589 1072 RCLGL---DHP------DTAHSYGNMALFYHGLNQT--ELALRHMSRALLLLSLSSGPDHPDVAATFINV-----AMMYQ 1135 (1403)
Q Consensus 1072 r~lg~---d~p------~~~~a~~nLA~~~~~~G~~--~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL-----A~iy~ 1135 (1403)
--+-. +.| ....+...++.+....+++ ..-+++|..|.++...-- ..|-..+..|-.+ +..+.
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe-~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE-DKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-CceeeHHHHHHHHhhhhhccccc
Confidence 22111 011 1123455555665555653 344678888887754321 1122222111111 11122
Q ss_pred HcCCHHH---HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000589 1136 DIGKMDT---ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC 1178 (1403)
Q Consensus 1136 ~~g~~de---Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~ 1178 (1403)
..|++.. ++-+|.+|+....+..-..-|.....|..+|..+..
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 3455555 555556666543322222234555566666555544
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.80 E-value=62 Score=39.24 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP---MHREVANCCRYLAMVLYHAGDM---AGAIMQQHKELIINE 1071 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~---~~p~~a~a~~~LA~iy~~~G~~---~eAi~~~~kAL~i~e 1071 (1403)
+..+++.|++++....|.+|+.++.+|-+.+-..... .--.++-.-..+-|||+.+.+. ..|..-+..|-+-++
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 5667888999999999999999998887765432100 0001222333456677766543 456666666655555
Q ss_pred HhcCC-----------CChhHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1072 RCLGL-----------DHPDTA---HSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1072 r~lg~-----------d~p~~~---~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+.+|. +.|+.+ ..+..-|.+.+.+|+-++|.++++.|...+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 55543 444433 334445777777777777877777777655443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.09 E-value=0.52 Score=54.68 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 000589 1049 VLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128 (1403)
Q Consensus 1049 iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~ 1128 (1403)
-.+..|.+++|++.|..|+.+ +|..+..|...+.++..++++..|++-|..|+.+ +|+.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 345678899999999999987 5788899999999999999999999999999976 567777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.-+.....+|+|.+|..+|..|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888899999999999999988764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.07 E-value=49 Score=41.22 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred HHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Q 000589 1087 NMALFYHGLNQ-------TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK---MDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1087 nLA~~~~~~G~-------~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~---~deAl~~lekAL~l~~~ 1156 (1403)
..+.++...|+ .++|..+|++++..... .....++.++..-...-+ ++....++++++.+.
T Consensus 291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-- 361 (656)
T KOG1914|consen 291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-- 361 (656)
T ss_pred HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh--
Confidence 34445555554 45666667776654321 223334444433222222 455555566655543
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+.+...++.++-+.-.+..-...|...|.+|-+.- .+..|--+..+ .+. +..+++..-|..+
T Consensus 362 -----~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhVfVa~A--~mE--------y~cskD~~~AfrI 423 (656)
T KOG1914|consen 362 -----DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHVFVAAA--LME--------YYCSKDKETAFRI 423 (656)
T ss_pred -----ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchhhHHHH--HHH--------HHhcCChhHHHHH
Confidence 23333445555555555556677777777765421 11212222111 111 2678999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~ 1278 (1403)
++ -.|.-+.+.|.....|...- ..++-..|..+|++++..
T Consensus 424 Fe--LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 424 FE--LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HH--HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 88 66777778887776665554 778888888888888873
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.48 E-value=2.4 Score=33.75 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
.+|..||.+....++|++|+.-|++++.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
Probab=83.36 E-value=3 Score=36.92 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=52.7
Q ss_pred EeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 88 VKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 88 v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
|+..++..+.+.+.+.++|.++++.|..... ..-.+..|.++| ..|+|...|.+. |+.+ +..|.|+.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~-~~~~~~~l~~~g-----~~l~d~~~l~~~-~v~~-~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEG-VPPEQQRLIYAG-----KILKDDKTLSDY-GIQD-GSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEEECC-----cCCCCcCCHHHC-CCCC-CCEEEEEE
Confidence 5666788889999999999999999998865 556678888888 678888777653 6676 67777653
|
UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.29 E-value=2.5 Score=33.61 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.++..||.+-...++|++|+.-|+++|++.++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 468889999999999999999999999999877543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.8 Score=32.19 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+++++|.++...|++++|+..|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 67899999999999999999999998753
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.58 E-value=1.8 Score=32.23 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.+++.+|.+|..+|++++|+.++++.+..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999876
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.55 E-value=1e+02 Score=38.63 Aligned_cols=171 Identities=19% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG---DMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G---~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+.++...|+..+|-.+-.++.++++.............|+.++..--..- .++.-..++++++.+ .+.
T Consensus 291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-------~~~ 363 (656)
T KOG1914|consen 291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-------EDI 363 (656)
T ss_pred HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-------hcc
Confidence 3455555566655555555555555444221111222223333332211111 133334444444443 233
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
+...+|.++-.+-.+..=...|...|.+|.+.-. +..|..++.++ .-|...++..-|.+.|+-.|+.. |
T Consensus 364 ~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf----~ 432 (656)
T KOG1914|consen 364 DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF----G 432 (656)
T ss_pred CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc----C
Confidence 3333445555555555566777777877765321 12222222222 23567788888988888777654 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+.+.... .....+...++-..|..+|++++.-
T Consensus 433 -d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 433 -DSPEYVL---KYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -CChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc
Confidence 3344333 3344566778888888888887753
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.43 E-value=14 Score=44.13 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN---ERL 1157 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~---~~~ 1157 (1403)
+-.++..+|..|...|+++.|++.|-|+...+.. ...++..+.|+-.+-..+|+|..-..+-.+|.... ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4567889999999999999999999998887644 36788889999999999999998888888887652 100
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
...-+....++..|+ ...+++|..|..++-.+
T Consensus 224 -~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 -AQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -HHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 001112233444444 44555888888877654
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=82.25 E-value=15 Score=36.84 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH---PD----TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~---p~----~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+..+|...++.+++-.|+-.|++|+.+.++...... .+ .+....|||.++..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999988732211 11 23456799999999999999999999888765544
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.02 E-value=1.3e+02 Score=36.63 Aligned_cols=115 Identities=16% Similarity=0.010 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD----HPDVAATFINVAMMYQDIGK---MDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d----~p~~a~~~~nLA~iy~~~g~---~deAl~~lekAL~l~~~ 1156 (1403)
.|..-|........|++|+.++-.|-+.+... ++. -.+.+..-..+-+||+.+.+ ...|..-+..|-+-+..
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 34455666666777888887777776654332 110 01122223344566666554 45676666666666665
Q ss_pred HhCCC-----------cHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1157 LLGEE-----------HIQT---AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1157 ~~G~~-----------~~~~---a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
.+|.+ .|.. ...+..-|.+.+.+|+-++|.++++.|...+.+.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 55544 3333 3445667899999999999999999998776654
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.84 E-value=1.6e+02 Score=37.55 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...++|-|.-+++..+|..|++.|+..+..... ...+...+....+|+.||..+.+.|.|.+++++|-+.-
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 356778888899999999999999998865422 12334568889999999999999999999999997743
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
+........+-.+....|+-++|+........++..
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 233344555666777788899999888877766543
|
|
| >cd01772 SAKS1_UBX SAKS1-like UBX domain | Back alignment and domain information |
|---|
Probab=81.75 E-value=6.5 Score=36.57 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=37.4
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHT 131 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~ 131 (1403)
..|.|++|+|+.++-.+.++++|.||++++..... .-..|.|...-
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~--~~~~f~L~t~f 50 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG--NGGPFTLMTPF 50 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC--CCCCEEEEeCC
Confidence 46899999999999999999999999999986532 22667887543
|
SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. |
| >cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains | Back alignment and domain information |
|---|
Probab=81.69 E-value=98 Score=37.53 Aligned_cols=124 Identities=27% Similarity=0.261 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHH-----HHHHHHHHHhhh--------c--c----cCCCccHHHHH
Q 000589 922 LWSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQ-----KVGISVTARKYD--------F--N----AATPFETSDIL 982 (1403)
Q Consensus 922 lw~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~-----k~Giql~~~~Y~--------f--~----~~~~f~~~dI~ 982 (1403)
+-..+.+.+...|. +-++.+...+..+.-||.-+. ..|+....+.|. | . ...+|.+.|..
T Consensus 21 ~~~~L~~~I~~~y~-~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp~~~~~~~~v~F~W~d~~ 99 (361)
T cd09239 21 FQPALKKYILENYG-EDPELYSEELKSLEQLRQEAVNPPRDFEGCSVLKRYYGQLHLLQSRFPMGAGQEAAVPFTWTDIF 99 (361)
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCccccccceeeeeccc
Confidence 44456666666664 334444445566666665432 234333333331 1 1 12355555554
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC---------CCCHHHHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG---------PMHREVANCCR 1044 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g---------~~~p~~a~a~~ 1044 (1403)
. ..-+...+-....+..+|++|-+|.+.| .++.|..+|+.|--.++.+.. ..++++..++.
T Consensus 100 ~-~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~ 178 (361)
T cd09239 100 S-GSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNY 178 (361)
T ss_pred C-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHH
Confidence 3 1222223344456888899998886544 267788888888776554321 33445555555
Q ss_pred HHH
Q 000589 1045 YLA 1047 (1403)
Q Consensus 1045 ~LA 1047 (1403)
.|.
T Consensus 179 ~lm 181 (361)
T cd09239 179 SLM 181 (361)
T ss_pred HHH
Confidence 544
|
This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.62 E-value=17 Score=45.20 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1041 NCCRYLAMVLY-HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1041 ~a~~~LA~iy~-~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+.+.++|..|+ .+|+..+|..++..|+-..- +|.. -.++..||.++.+.|...+|--.+..|+. +
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~--------d 278 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHNK-DIALLSLATVLHRAGFSADAAVILHAALD--------D 278 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----cccc-cchhhhHHHHHHHcccccchhheeehhcc--------C
Confidence 34455555554 57999999999999987742 2222 23577899999999999999888766664 3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.+....-++.+|.+|..+++|.....+|..+.+.
T Consensus 279 A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 279 ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 3445555888999999999999999888877764
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.34 E-value=48 Score=40.45 Aligned_cols=146 Identities=15% Similarity=0.024 Sum_probs=81.3
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLA--MVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA--~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
|....+......+..+++.++|..|..++...... +. + ... ...+..|+ ..++..-++.+|.+++++.+...
T Consensus 126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~-~-~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRR---LP-G-REE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-c-hhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 33444566777888999999999999999998764 21 1 122 44555554 45577889999999999877642
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.. -......+..+..+. ++...+...............+.....+...|.--...|+|+.|+..+-++
T Consensus 200 ~~-----l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~ 267 (379)
T PF09670_consen 200 KA-----LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRA 267 (379)
T ss_pred hh-----hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 000111111121111 122222122111111000001223333444444445689999999999999
Q ss_pred HHHHHH
Q 000589 1151 LKKNER 1156 (1403)
Q Consensus 1151 L~l~~~ 1156 (1403)
+++..+
T Consensus 268 lEl~~Q 273 (379)
T PF09670_consen 268 LELLAQ 273 (379)
T ss_pred HHHHHH
Confidence 998643
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=81.34 E-value=29 Score=48.74 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---C-------------------
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---N------------------- 1096 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---G------------------- 1096 (1403)
.++..-.+|.+|...|++.+|+..|.+|+.+.+.. .|+-..+.++-.++.+..-. |
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 45666779999999999999999999999988764 45555555555554433210 0
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHhhc---CCCCH--HHHHHHHHHHHHHHHc
Q 000589 1097 ----------------------------------QTELALRHMSRALLLLSLSS---GPDHP--DVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1097 ----------------------------------~~~eAl~~l~rAL~l~~~~~---g~d~p--~~a~~~~nLA~iy~~~ 1137 (1403)
-...=...+++++.++.+.. .+..| -...+...++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 01111234455555554432 11122 2456677777777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1138 G--------------------KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1138 g--------------------~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
. .-.++..++.+++.+..... ...+...+|..+|.+|...|-..++.-+++.++..+-
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 7 78888999999988765433 3456678999999999999999999989988887664
Q ss_pred H
Q 000589 1198 K 1198 (1403)
Q Consensus 1198 ~ 1198 (1403)
.
T Consensus 477 ~ 477 (1185)
T PF08626_consen 477 P 477 (1185)
T ss_pred c
Confidence 4
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.7e+02 Score=41.35 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---C-------------------
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---G------------------- 1054 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---G------------------- 1054 (1403)
.++..-.+|.+++..|++.+|+..|.+|+.+.+.. .|+-..+.++-.++.+.... |
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 46666778999999999999999999999998774 45556666666655433211 1
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHC
Q 000589 1055 ----------------------------------DMAGAIMQQHKELIINERCL---GLDHPD--TAHSYGNMALFYHGL 1095 (1403)
Q Consensus 1055 ----------------------------------~~~eAi~~~~kAL~i~er~l---g~d~p~--~~~a~~nLA~~~~~~ 1095 (1403)
-...=.+.+.+++.++.+.. ..-.|. ...+...++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 01222345566666665553 111232 345566677777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1096 N--------------------QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1096 G--------------------~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
. .-.++..++.+++.+....+ +..+.+.+|..+|.+|..+|-..++--+++.++....
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 6 77888889999988754332 3466789999999999999999999989888887664
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.24 E-value=2.1e+02 Score=39.16 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLG--EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G--~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.+.|.|++|+.+|.--.+..+..+. .+|...-.-+..-|..|...|+.++|+..|+.+.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 3556777777766544433322210 0111111123344666777777777777776553
|
|
| >cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins | Back alignment and domain information |
|---|
Probab=81.18 E-value=67 Score=38.74 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhc--------CCCC
Q 000589 974 TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVT--------GPMH 1036 (1403)
Q Consensus 974 ~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~--------g~~~ 1036 (1403)
.+|.+.|...--..+....-....+..++++|-++.+.+ .+..|..+|++|--+++-+. ...+
T Consensus 83 v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~ 162 (348)
T cd09242 83 VDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQ 162 (348)
T ss_pred ceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 345555543311122233334456788888888776543 46778888888877765432 1234
Q ss_pred HHHHHHHHHHH
Q 000589 1037 REVANCCRYLA 1047 (1403)
Q Consensus 1037 p~~a~a~~~LA 1047 (1403)
+.+..++..|.
T Consensus 163 ~~~l~~L~~lm 173 (348)
T cd09242 163 QENVKFLVKLM 173 (348)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.03 E-value=12 Score=39.67 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
......+.++..+-...++.+++..++.- +..+ .|.....-..-|+++...|+|.+|+.+++....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 34466788888888899999998888754 4432 566677778889999999999999999998643
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTE 1099 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~ 1099 (1403)
+.+....+--.++.|++.+++.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 24555566667889998888854
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=80.13 E-value=22 Score=43.33 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 947 KKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFS 1026 (1403)
Q Consensus 947 ~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~ 1026 (1403)
..+.+|..+..+.+|.-....+.-+. .++...+-..-.++++.++. -++..+.+++...|+|..|+..+.-.--
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~-~~~~~~~~~g~~~l~~~LGY-----FSligLlRvh~LLGDY~~Alk~l~~idl 150 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGE-DPDEVAGEYGSSPLYKMLGY-----FSLIGLLRVHCLLGDYYQALKVLENIDL 150 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccC-CchhhhcccccccHHHHhhH-----HHHHHHHHHHHhccCHHHHHHHhhccCc
Confidence 44667777777777755444332221 12211111133344444432 3355578899999999999988754311
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 1027 ILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 1027 l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
-...++....+-....++.+|.+|+.+++|.+|+..+...+....+.
T Consensus 151 ~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 151 NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112333344556789999999999999999999999999877664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1403 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 8e-11 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 3e-09 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 9e-09 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 1e-08 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 4e-36
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 1/216 (0%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+ L + ++G A L +A L++ +G H +VA LA+V
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
A + L I E+ LG DHP A + N+A+ Y + + A RAL + G
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177
DHPDVA N+A++ Q+ GK + Y Q AL+ + LG + A + LA +
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 1178 CMGAFKLSHQHEKKTYDILVKQ-LGEEDSRTKDSQN 1212
G FK + K+ ++ G D K
Sbjct: 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 9e-34
Identities = 49/187 (26%), Positives = 83/187 (44%)
Query: 1026 SILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085
++ Q G L + G A+ + L E+ G DHPD A
Sbjct: 13 NLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML 72
Query: 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145
+AL Y N+ + A ++ AL + + G DHP VAAT N+A++Y GK A
Sbjct: 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132
Query: 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
+ AL+ E++LG++H A + LA+ G ++ + ++ +I +LG +D
Sbjct: 133 LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192
Query: 1206 RTKDSQN 1212
++N
Sbjct: 193 NVAKTKN 199
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 7e-33
Identities = 54/216 (25%), Positives = 80/216 (37%), Gaps = 3/216 (1%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
A L + V + +A L ++A +I ++ G H VA LA++ G
Sbjct: 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
A + L I E+ LG DHPD A N+AL + E + RAL + G
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK-NERLLGEEHIQTAVCYHALAIAF 1176
PD P+VA T N+A Y GK A +E L + +ER G + +
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248
Query: 1177 NCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212
C G K + K + +
Sbjct: 249 ECKGKQKDGTSFGEY--GGWYKACKVDSPTVTTTLK 282
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-29
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 3/170 (1%)
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071
G EA L A I ++V G H +VA LA++ + G + L I +
Sbjct: 125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184
Query: 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS-GPDHPDVAATFINV 1130
LG D P+ A + N+A Y + + A L G + +++
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+ GK + + + + L + G
Sbjct: 245 EEREECKGKQKDGTSFGEYGGW--YKACKVDSPTVTTTLKNLGALYRRQG 292
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 3/146 (2%)
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL-IIN 1070
G E + A I Q GP VA LA G A + L +
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130
ER G + + + + + + D P V T N+
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC--KVDSPTVTTTLKNL 284
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNER 1156
+Y+ GK + A + A++ ++
Sbjct: 285 GALYRRQGKFEAAETLEEAAMRSRKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 6e-16
Identities = 24/110 (21%), Positives = 43/110 (39%)
Query: 1103 RHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162
H S L G + P T N+ + Y G+ + A+ ++AL+ E+ G +H
Sbjct: 6 HHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH 65
Query: 1163 IQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212
A + LA+ + +K + I K LG++ + N
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-34
Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 7/213 (3%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
A L +A L++ +G H +VA LA+V A
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
+ L I E+ LG DHP A + N+A+ Y + + A RAL + G HPDV
Sbjct: 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG--- 1180
A N+A++ Q+ GK + Y + AL+ LG + A + LA + G
Sbjct: 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186
Query: 1181 -AFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212
A L +++ K+ G + K
Sbjct: 187 DAETL---YKEILTRAHEKEFGSVNGDNKPIWM 216
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 3/170 (1%)
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071
G EA L A I ++V G H +VA LA++ + G + L I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS-GPDHPDVAATFINV 1130
LG D P+ A + N+A Y + + A L G + D +++
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+ K + Y + + + +L + G
Sbjct: 219 EEREESKDKRRDSAPYGEYGSW--YKACKVDSPTVNTTLRSLGALYRRQG 266
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 3/156 (1%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
AK L + + +G E + A I GP VA LA G
Sbjct: 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186
Query: 1058 GAIMQQHKEL-IINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
A + L +E+ G + D + + ++ + + +
Sbjct: 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC-- 244
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
D P V T ++ +Y+ GK++ A A +
Sbjct: 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 6e-17
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMM 1133
+G H H GL A+ +AL L +SG DHPDVA +A++
Sbjct: 1 MGSSHHHHHH--------SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALV 52
Query: 1134 YQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193
Y+D K A L +AL E+ LG++H A + LA+ + G +K + K+
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112
Query: 1194 DILVKQLGEEDSRTKDSQN 1212
+I K LG+ N
Sbjct: 113 EIREKVLGKFHPDVAKQLN 131
|
| >1sgo_A HSPC210, protein C14ORF129; HR969, structure, human protein, NESG, structural genomics, HS.4104 HOMO sapiens, NESG cluster ID 18152.; NMR {Homo sapiens} SCOP: d.82.3.1 Length = 139 | Back alignment and structure |
|---|
Score = 98.7 bits (245), Expect = 4e-24
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 22/143 (15%)
Query: 193 SLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVESIVFS 252
L+ + + + + L+ + DV V ++ S
Sbjct: 9 ELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVL--------------FAVNNMFVS 54
Query: 253 SFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATT 312
D+ Y++V T E ++YC+ T V + +D E T
Sbjct: 55 KSLRCAD------DVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHE--T 106
Query: 313 LIGLLQKISSKFKKAFREILDRK 335
+ LL +S +++AF L ++
Sbjct: 107 VYSLLDTLSPAYREAFGNALLQR 129
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-20
Identities = 26/185 (14%), Positives = 51/185 (27%), Gaps = 7/185 (3%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
+ + +G V EA F Q+ H + MV AG+
Sbjct: 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQVGMVERMAGN 81
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
A +E + L D + + +A A + ++L+ +
Sbjct: 82 WDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY-AQQ 139
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIA 1175
+ D +A F + + Q + A ++ A L + L
Sbjct: 140 AD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE-LEDSEAV-NELMTRLNGL 196
Query: 1176 FNCMG 1180
+
Sbjct: 197 EHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 6e-15
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 4/122 (3%)
Query: 1061 MQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120
+ L + + + Y +++ + A + SG DH
Sbjct: 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKSG-DH 62
Query: 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
V M+ + G D A R E + L E+ + + + +A G
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFG 121
Query: 1181 AF 1182
Sbjct: 122 DL 123
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 9e-20
Identities = 47/301 (15%), Positives = 94/301 (31%), Gaps = 29/301 (9%)
Query: 965 ARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEA 1024
K N T E + + + + + +L G + + EA + EA
Sbjct: 71 PGKTYGNRPTVTELLETIETP---QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127
Query: 1025 FSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084
L V+ E A +A YH ++ + L I + L T S
Sbjct: 128 EKELPFVSD--DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-HPLYSIRTIQS 184
Query: 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTAL 1144
+A Y + AL H+ AL L + +A + +N+A Y G A+
Sbjct: 185 LFVIAGNYDDFKHYDKALPHLEAALELAM--DIQNDRFIAISLLNIANSYDRSGDDQMAV 242
Query: 1145 RYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204
+ Q+A K + + + + L+ G + + Q ++ D
Sbjct: 243 EHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFIEEGLDH--------- 290
Query: 1205 SRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVAA 1261
+ + + + F + + + + + H + ++ AA
Sbjct: 291 ITARSHKFYKELFLFLQAVYKETVDERKI------HDLLSYFEKKNLHAYIEACARSAAA 344
Query: 1262 A 1262
Sbjct: 345 V 345
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 12/168 (7%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
A +L+ + G A F +A + ++ + L+ L AG
Sbjct: 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PKVLFGLSWTLCKAGQ 276
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
A + L H + + + + R + L
Sbjct: 277 TQKAFQFIEEGLDHITA---RSHKFYKELFLF----LQAVYKETVDERKIHDLLSYFE-- 327
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163
H + A + A +++ + A + ++ LK E +L E +
Sbjct: 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 5e-19
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 8/176 (4%)
Query: 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQH 1064
+ L A L+ E S++ + L Y G+ A++
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Query: 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA 1124
+ L+I + G D +Y N+ Y L + E A + + LLL + D A
Sbjct: 208 QRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLK-DRAVEA 263
Query: 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+ ++ Y + + A+ Y + L + L ++ I +L A+ +G
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALG 317
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-18
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 24/203 (11%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
EAK +G G EA I +++ A L V + G
Sbjct: 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGK 138
Query: 1056 MAGAIMQQHKELIIN-------------ERCLGL-----DHPDTAHSYGNMALFYHGLNQ 1097
G Q E L L D ++GN+ ++ L
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Query: 1098 TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157
A+ + LL+ + G D + N+ Y +G+ +TA Y ++ L +L
Sbjct: 199 FRDAVIAHEQRLLI-AKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256
Query: 1158 LGEEHIQTAVCYHALAIAFNCMG 1180
++ A ++L + +
Sbjct: 257 --KDRAVEAQSCYSLGNTYTLLQ 277
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
L +GD + + + D + Y + Y L+ AL +
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
L L + + G D A N+ + +G D A+ Q L + L + +
Sbjct: 67 HHDLTL-ARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGE 122
Query: 1166 AVCYHALAIAFNCMG 1180
A + L ++ G
Sbjct: 123 ARALYNLGNVYHAKG 137
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140
+ + A+ + D ++A + + Y +
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 1141 DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
AL Y L + + + A L +G F
Sbjct: 60 AKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFD 100
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-18
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
Query: 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL 1095
L Y G+ A++ + L+I + G D +Y N+ Y L
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FG-DKAAERIAYSNLGNAYIFL 62
Query: 1096 NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155
+ E A + + LLL + D A + ++ Y + + A+ Y + L +
Sbjct: 63 GEFETASEYYKKTLLL-ARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120
Query: 1156 RLLGEEHIQTAVCYHALAIAFNCMG 1180
L ++ I +L A+ +G
Sbjct: 121 EL--KDRIGEGRACWSLGNAYTALG 143
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-17
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 6/162 (3%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
++ + +G G +A + I ++ L G+
Sbjct: 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGE 64
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
A K L++ + L D A S ++ Y L E A+ + + L + +
Sbjct: 65 FETASEYYKKTLLLARQ-LK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE 121
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157
D ++ Y +G D A+ + ++ L+ + +
Sbjct: 122 LK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 4e-13
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136
++GN+ ++ L A+ + LL++ G D + N+ Y
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-LLIAKEFG-DKAAERIAYSNLGNAYIF 61
Query: 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
+G+ +TA Y ++ L +L ++ A ++L + + ++
Sbjct: 62 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE 106
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-18
Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
++ + +G G +A + I ++ L G+
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERRAYSNLGNAYIFLGE 242
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
A K L++ + L D A S ++ Y L E A+ + + L + +
Sbjct: 243 FETASEYYKKTLLLARQ-LK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE 299
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT-----AVCYH 1170
D ++ Y +G D A+ + ++ L+ + + + T +
Sbjct: 300 LN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358
Query: 1171 ALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
L ++++ + + + + + +LG S
Sbjct: 359 VLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHS 393
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-16
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 8/145 (5%)
Query: 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL 1095
L +GD + + + D + Y + Y L
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYL 60
Query: 1096 NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155
+ AL + L L + + G D A N+ + +G D A+ Q L +
Sbjct: 61 HDYAKALEYHHHDLTL-ARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118
Query: 1156 RLLGEEHIQTAVCYHALAIAFNCMG 1180
L + + A + L ++ G
Sbjct: 119 EL--NDKVGEARALYNLGNVYHAKG 141
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 9e-16
Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 25/226 (11%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
+ + ++G ++A ++ + + A L L G+
Sbjct: 45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD--QLGEAKASGNLGNTLKVLGN 102
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
AI+ + L I+ L D A + N+ YH ++ +
Sbjct: 103 FDEAIVCCQRHLDISRE-LN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160
Query: 1116 SG------------------PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157
D F N+ + +G A+ ++ L +
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203
+ Y L A+ +G F+ + ++ KKT + +QL +
Sbjct: 221 --GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDR 263
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 9/176 (5%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
+E + +G + G A + + + +Q+ A C L D
Sbjct: 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQD 282
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL---L 1112
AI K L I + L D + ++ Y L + A+ + L + +
Sbjct: 283 YEKAIDYHLKHLAIAQE-LN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340
Query: 1113 SLSSGPD--HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166
SG +++ + + + Y + + + +L LG H
Sbjct: 341 GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMEN 396
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 6/107 (5%)
Query: 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136
+ + A+ + D ++A + + Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFY 59
Query: 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
+ AL Y L + + + A L +G F
Sbjct: 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFD 104
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 7/142 (4%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
EA++ +G +A + +I Q++ C L G+
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLGNAYTALGN 322
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAH-----SYGNMALFYHGLNQTELALRHMSRALL 1110
A+ K L I+ TA + L Y N + +L
Sbjct: 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
Query: 1111 LLSLSSGPDHPDVAATFINVAM 1132
+ G H + +
Sbjct: 383 GVRPKLGRRHSMENMELMKLTP 404
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 4e-18
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 21/200 (10%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
EAK+ +G G EA ++ +Q+ L V + G
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGK 181
Query: 1056 MAGAIMQQHKELIIN----------ERCLGL-----DHPDTAHSYGNMALFYHGLNQTEL 1100
G + + L L D + GN+ Y+ L +
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA 241
Query: 1101 ALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160
A+ H L + + G D N+ + +G+ + A + + L LGE
Sbjct: 242 AIEHHQERLRI-AREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-LGE 298
Query: 1161 EHIQTAVCYHALAIAFNCMG 1180
++ A ++L + +
Sbjct: 299 REVE-AQSCYSLGNTYTLLH 317
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-18
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 10/181 (5%)
Query: 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGA 1059
+ L G G + L +AGD
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDG--GSSMCLELALEGERLCNAGDCRAG 67
Query: 1060 IMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119
+ + D + Y + Y L A+++ L L + S D
Sbjct: 68 VAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL-AKSMN-D 121
Query: 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM 1179
A + N+ + +G+ D A + L +L + + + L ++
Sbjct: 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK 179
Query: 1180 G 1180
G
Sbjct: 180 G 180
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 6/157 (3%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
++ + +G G A E I ++ L G
Sbjct: 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD--RAAERRANSNLGNSHIFLGQ 278
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
A + L + LG + A S ++ Y L++ A+ + +R L + +
Sbjct: 279 FEDAAEHYKRTLALAVE-LG-EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-AQE 335
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
G D A ++ + IG + AL+Y ++ L+
Sbjct: 336 LG-DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 5e-17
Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 5/195 (2%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
+A+ +M + + +A+ I ++ + + C A
Sbjct: 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQY 200
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
AI K + E + N+ L + +Q E A+ + RA+ + S+
Sbjct: 201 EDAISHFQKAYSMAEA-EK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176
P + + + ++ +GK+D A Y + + +++ ++ +L ++
Sbjct: 259 --ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316
Query: 1177 NCMGAFKLSHQHEKK 1191
A + +
Sbjct: 317 PDEEAIQGFFDFLES 331
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 23/199 (11%), Positives = 55/199 (27%), Gaps = 37/199 (18%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+ L +A + F +A+S+ + + + + +
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYE 241
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL----- 1112
AI + + + E P +Y + ++ L + + A + S+ +
Sbjct: 242 DAIPYFKRAIAVFEE--SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299
Query: 1113 ----------------------------SLSSGPDHPDVAATFINVAMMYQDIGKMDTAL 1144
L S + D+ I+VA Y + A
Sbjct: 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKAS 359
Query: 1145 RYLQEALKKNERLLGEEHI 1163
Y + + + + G +
Sbjct: 360 AYFLKVEQVRQLIQGGVSL 378
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 8/166 (4%)
Query: 1044 RYLAMVLYHAG--DMAGAIMQQHKELIINERCLGLDHPDTAHSYGN--MALFYHGLNQTE 1099
R+ M+ Y M + +L++ Y N ++ +
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 1100 LALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159
A++ +A L D + A F ++ Y + + ++ Y ++A + +
Sbjct: 121 SAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178
Query: 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
+ C+ A F + ++ + H +K Y + + +
Sbjct: 179 YNI-RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQL 222
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 2e-13
Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 8/173 (4%)
Query: 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060
L++ ++ A+G L A+ +AF ++ + R A +L+ + A
Sbjct: 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155
Query: 1061 MQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120
+ + + + A ++R LL +
Sbjct: 156 ASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYHS 211
Query: 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173
++ + +Q G A +L+ + + + +A
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHT----AKPEFANNHFLQGQWRNIA 260
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-11
Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 8/165 (4%)
Query: 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELI 1068
+ +G EA L A L+++ L VL+ G++ ++ +
Sbjct: 25 INDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81
Query: 1069 INERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128
+ + S + + A +A L++ P
Sbjct: 82 MARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 1129 NVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173
A + ++D A + ++ + Q C L
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLI 181
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 6e-11
Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 9/171 (5%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+G+V +G L+ + L + + +Q + + +L+ G + A Q
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQ 116
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
K + P A + + A + +L S
Sbjct: 117 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL---SSYQPQQQ 173
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174
+ G +D A L E LLG + +A +
Sbjct: 174 LQCLAMLIQCSLARGDLDNARSQLNRL----ENLLGNGKYHSDWISNANKV 220
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 7/155 (4%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+ L + + LA G L A + + ++L ++N + + GD A
Sbjct: 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKA 232
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
A L + ++ + N+A L + E A + S
Sbjct: 233 AA----ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR--SL 286
Query: 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
D+ + + +Y G+ A R L +ALK
Sbjct: 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 18/169 (10%), Positives = 41/169 (24%), Gaps = 6/169 (3%)
Query: 1029 QQVTGPMHREV-ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGN 1087
++ + A A V + G+ A L E +
Sbjct: 2 HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL---EELPPGWFYSRIVATSV 58
Query: 1088 MALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYL 1147
+ H + +L M + + + I + + G + TA
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 116
Query: 1148 QEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196
++A + E+ A + + ++L
Sbjct: 117 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 119/761 (15%), Positives = 227/761 (29%), Gaps = 238/761 (31%)
Query: 318 QKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSY 377
+ I S F+ AF + D K + +S+L + D R L LS
Sbjct: 19 KDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSK 74
Query: 378 GSELIGMQRDWNEELQSCREFPQELLRRAINGAIGVISRCIPPINPTDPECFHMYVHNNI 437
E++ Q+ E L+ +F ++ P+ ++ + +
Sbjct: 75 QEEMV--QKFVEEVLRINYKFLMSPIKTE-------------QRQPSMMTRMYIEQRDRL 119
Query: 438 FFSFAVDSDLN------------HLSRKRASDIISIN---SSGK--------ASHNFTSA 474
+ V + N L R + + I+ SGK S+
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 475 -DGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHN 533
D I + + L +S + E Q + + +D
Sbjct: 180 MDFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSSNIK 224
Query: 534 LAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLH 593
L + I R++ + LL + N N +K A
Sbjct: 225 LRIHSIQAELRRLLKSKPYE--------NCLLV--LLN----VQN----AKAWNA----- 261
Query: 594 LKEHTVLDGSGNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYT---GLGSRFCIM 650
F L CK +L +T R T + I
Sbjct: 262 -------------FNL----SCK----------IL----LTTRFKQVTDFLSAATTTHIS 290
Query: 651 RPELITAFCQVEAAE------KSKGQSKPEGEAI-VNPDSSEASGIKESANHEVNVTATS 703
E + Q P E + NP S I ES + T
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRR--LSIIAESIRDGLA---TW 344
Query: 704 DVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEIAADEENVRK 763
D + + K+ T+ E +S P E++ + +
Sbjct: 345 DNWKHVNCD-KLTTIIE---SSLNV--------LEPA---EYR------------KMFDR 377
Query: 764 VSLYLADVVLPKFIQDLCTL--EVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLPHLW 821
+S++ +P L + +V D + LH + + + + + T +P ++
Sbjct: 378 LSVFPPSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIY 432
Query: 822 DLCSNEIVVRSAKH--ILK--DVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQ 877
++ A H I+ ++ + + DL P +L F+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYFY---------------- 474
Query: 878 SRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWS----DLKEF--AK 931
H GH H + + TL+ D + F K
Sbjct: 475 ------SHIGH---------------------HLKNIEHPERMTLFRMVFLDFR-FLEQK 506
Query: 932 LKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFE--TSDILNLQPVVK 989
+++ D+ W S++ N Q++ + Y + +E + IL+ P ++
Sbjct: 507 IRH------DSTAWNASGSIL-NTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIE 556
Query: 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQ 1030
++ ICS+ +L +++A L++E +F EA +Q+
Sbjct: 557 ENL-ICSKYTDL-----LRIA--LMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-09
Identities = 66/504 (13%), Positives = 136/504 (26%), Gaps = 146/504 (28%)
Query: 768 LADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTKHLPHLWDLCS-- 825
+ V F+ + +V M L++ H I GT L W L S
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRL--FWTLLSKQ 75
Query: 826 NEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEH 885
E+V + +++VLR ++ F
Sbjct: 76 EEMV----QKFVEEVLR--INYK-----------FL------------------------ 94
Query: 886 AGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLK-YQFELPEDARL 944
S + + + + + L++D + FAK + + R
Sbjct: 95 --------MSPIKTEQRQPSMMTRMYIEQRDR----LYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 945 WVKKVSVMRNL-------CQKVGISV----TARKYDFNAATPF-----------ETSDIL 982
+ ++ +N+ K + Y F +L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 983 -NLQ----PVVKHSVPICSEAKNL---VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP 1034
LQ + + + N+ + + +L L S+ Y +L V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQ-- 254
Query: 1035 MHREVANC----CRYLAMVLYHAGDMAGAIMQQH-KELIINERCLGLDHPDTAHSYGNMA 1089
+ + N C+ L + + + + ++ + L + +
Sbjct: 255 -NAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------KS 305
Query: 1090 LFYHGLNQTELALRH--MSRALLLLSL--SSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145
L L+ L ++ LS+ S D T+ N + D K+ T +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCD--KLTTIIE 360
Query: 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
L+ E + + L++ F S ++ + +
Sbjct: 361 SSLNVLEPAE-------YRK--MFDRLSV-------FPPSAHIPTILLSLIWFDVIKS-- 402
Query: 1206 RTKDSQNWMKTFKMRELQMNVQKQ 1229
D + L V+KQ
Sbjct: 403 ---DVMVVVNKLHKYSL---VEKQ 420
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 95/670 (14%), Positives = 187/670 (27%), Gaps = 231/670 (34%)
Query: 625 HYLLDLMRVTPRDANYTGLGSRFCIMRPELITAF-CQ-VEAAEKSKGQSKPEGEAIVN-P 681
H+ +D Y + S F + F C+ V+ KS SK E + I+
Sbjct: 4 HHHMDF-ETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSK 58
Query: 682 DSSEAS----GIKESANHEVNVTATSDVSQDATK--EGKVETVQECRSASEESSDSCDGI 735
D+ + S E+ +V + K ++T Q S
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 736 LFNPN-AFTEFKLAGSQDEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSP------M 788
L+N N F ++ NV ++ YL K Q L L + +
Sbjct: 119 LYNDNQVFAKY--------------NVSRLQPYL------KLRQALLELRPAKNVLIDGV 158
Query: 789 DG---QTLT-EALHAHGI------NIRYI--GKVADGTKHLPHLWDLCSN---------- 826
G + + ++ + I ++ L L L
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 827 -----EIVVRSAKHILKD------------VLRETEDHDLGPAIAHLFNCFFGSCQAVRG 869
++ + S + L+ VL ++ + FN SC+ +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAFN---LSCKIL-- 269
Query: 870 KVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSD--LK 927
+T +R + D ++A ++ +S TL D
Sbjct: 270 -LT-----TRF---------------KQVT---DFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 928 EFAK---LKYQFELPEDARLWVKKVSVMRNLCQKVGISVTA-------------RKYDFN 971
K + Q +LP + + R +S+ A + + +
Sbjct: 306 LLLKYLDCRPQ-DLPREV----LTTNPRR-------LSIIAESIRDGLATWDNWKHVNCD 353
Query: 972 AATPFETSDILNLQP-----------VVKHSVPI---------CSEAKNLVEMGKVQLAE 1011
T S + L+P V S I K+ V + +L +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 1012 GLL------SEAYTLFSEAFSILQQVTG--PMHREVANC--------------------- 1042
L ++ S + ++ +HR + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD---------HPDTAHSYGNMALFYH 1093
++ +H + + L R + LD H TA + L +
Sbjct: 474 YSHIG---HH---LKNIEHPERMTLF---RMVFLDFRFLEQKIRHDSTAWNASGSIL--N 522
Query: 1094 GLNQTELALRHMS----------RALLLLSLSSGPD-----HPDVAATFINVAMMYQDIG 1138
L Q + ++ A+L + + D+ + +A+M +D
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL----LRIALMAEDEA 578
Query: 1139 KMDTALRYLQ 1148
+ A + +Q
Sbjct: 579 IFEEAHKQVQ 588
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 3e-11
Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 36/246 (14%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+ ++ +G + EA L+ +A + E A LA VL G + A+M
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
+ + I+ P A +Y NM + + AL+ +RA+ + +P
Sbjct: 67 KEAIRIS--------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAF 110
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
A N+A +++D G + A+ + ALK Y LA +
Sbjct: 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--------PDAYCNLAHCLQIVC--- 159
Query: 1184 LSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAI 1243
+ LV + ++ + + + L +K + K
Sbjct: 160 -DWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIN 218
Query: 1244 DILKAH 1249
+ K
Sbjct: 219 VLHKPP 224
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG 1138
P A S N+A E A+R +AL + P+ AA N+A + Q G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQG 57
Query: 1139 KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191
K+ AL + +EA++ + A Y + M + + Q +
Sbjct: 58 KLQEALMHYKEAIRISP--------TFADAYSNMGNTLKEMQDVQGALQCYTR 102
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 16/186 (8%), Positives = 45/186 (24%), Gaps = 29/186 (15%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+EA +F++ + A+ Y
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYD 54
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
A K++ + + + Q LA++ A+
Sbjct: 55 LAQ----KDIETYFSKVNAT-KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------ 103
Query: 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177
+ + + + G A++Y+++ ++ ++ L A+
Sbjct: 104 --DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--------TDPKVFYELGQAYY 153
Query: 1178 CMGAFK 1183
+
Sbjct: 154 YNKEYV 159
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 27/180 (15%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
GK+ + +G S A + A + + Y+ G+ AI
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYM 131
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
K++ + + Y+ + A + L L P++
Sbjct: 132 EKQIRPT--------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNI 175
Query: 1124 AATFINVAMMYQDIG---KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
++ A K A Y ++ ++ + + +A +
Sbjct: 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 16/110 (14%)
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
Y +L G + AI Q + + YG + +++ LA+++
Sbjct: 79 YYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQY 130
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
M + + F + Y + A + L+
Sbjct: 131 MEKQIRP--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 10/155 (6%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRY--LAMVLYHAGDMAGAIM 1061
+ ++ +G A +A ++QQ E+ + + A V YH G ++ +
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQ-EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI 115
Query: 1062 QQHKELIINERCLGLDHPDTAHSYGNM--ALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119
K + E+ ++ G NQ E A +AL P
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPK 170
Query: 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
+P+ + + + A+ L++A++ N
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 24/153 (15%)
Query: 1046 LAMVLYHAGDM---AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL----NQT 1098
LA+ Y + AI + + +N PD + +AL H + +
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN--------PDNQYLKVLLALKLHKMREEGEEE 229
Query: 1099 ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158
+ + AL P DV + A Y+ + D A+ L++AL+
Sbjct: 230 GEGEKLVEEALEK-----APGVTDV---LRSAAKFYRRKDEPDKAIELLKKALEYIPN-N 280
Query: 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191
H Q CY A + + + +
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 7e-05
Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 51/272 (18%)
Query: 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQH 1064
K++ E L EA V + R A + AI
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 1065 KELIINERCLGLDHPDTAHSYGNMALFYHG-----LNQTELALRHMSRALLLLSLS---- 1115
K L P+ A+ + + Y +N E + + L L+ +
Sbjct: 272 KALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 1116 --SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173
+ + ++ +A ++ + + A Y Q+ K + +
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL----TPVAKQLLHLRYGN 379
Query: 1174 IAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKD-SQNWMKTFKMRELQMN------- 1225
M + H + I + SR K+ ++ ++ L N
Sbjct: 380 FQLYQMKCEDKAIHHFIEGVKI------NQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433
Query: 1226 -----VQKQKGQAFNA-ASTQKAIDILKAHPD 1251
+Q+ + A +++ ++ P
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPS 465
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 26/151 (17%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+G + G + A ++++ + N L +V ++ DM AI
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNE---LGVVAFNKSDMQTAINHF 498
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
L++ ++ + A ++ N+ Y L + A+ +++ LLL +
Sbjct: 499 QNALLLVKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STND 549
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
A +A++Y A+ +L E+L +
Sbjct: 550 ANVHTAIALVYLHKKIPGLAITHLHESLAIS 580
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 45/196 (22%)
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN- 1070
G ++ Y + ++ H E A + + ++ A K ++
Sbjct: 353 GEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 1071 --------------------------ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
L T Y + + + L LA +
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEY 463
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164
+ + L + ++ + M TA+ + Q AL ++ E
Sbjct: 464 LQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 1165 TAVCYHALAIAFNCMG 1180
A + L A+ +
Sbjct: 516 -AATWANLGHAYRKLK 530
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 32/210 (15%)
Query: 971 NAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQ 1030
+ T E D++ +S + ++L + + + + + + L++
Sbjct: 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303
Query: 1031 VTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090
++ C A L+ + I + L +D P Y
Sbjct: 304 -----SSDLLLC---KADTLFVRSRFIDVL-------AITTKILEID-PYNLDVYPLHLA 347
Query: 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150
H + + + HP+ A T++ V + Y + K+ A RY ++
Sbjct: 348 SLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
Query: 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+ + + A +F G
Sbjct: 400 STMDPQF--------GPAWIGFAHSFAIEG 421
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+G A FS+A SI P V + + +V + G+ A
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHE---VGVVAFQNGEWKTAEKWF 216
Query: 1064 HKELIINERCLG-LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122
L + + N+ L + AL + +AL+L P
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQ 268
Query: 1123 VAATFINVAMMYQDIGKMDTALRYLQEALK 1152
A+T+ + ++ +G + A+ Y AL
Sbjct: 269 NASTYSAIGYIHSLMGNFENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG 1138
+ L Y N ++LA R S+AL + P+ V ++ G
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNG 207
Query: 1139 KMDTALRYLQEALKKNERLLGEEHIQT-AVCYHALAIAFNCMG 1180
+ TA ++ +AL+K + + E + + L +
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRY-LAMVLYHAGDMAGAIM 1061
E+G V G A F +A ++ + + + L V A A+
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 1062 QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121
+ L++ P A +Y + + + E A+ + AL L
Sbjct: 258 YHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--------RR 301
Query: 1122 DVAATFINVAMMYQDIGKMDTAL 1144
D + + + A
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 21/224 (9%), Positives = 48/224 (21%), Gaps = 53/224 (23%)
Query: 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060
+V + + Y L S P H L
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEK-----DPFHASCLP---VHIGTLVELNKANELF 76
Query: 1061 MQQHKELIIN----------------------------ERCLGLDHPDTAHSYGNMALFY 1092
HK + + + L+ ++ +
Sbjct: 77 YLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSF 135
Query: 1093 HGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
++ + A+ A L+ + + + Y A R+ +AL
Sbjct: 136 AVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 1153 KNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196
H + + G +K + + + +
Sbjct: 188 IAPED--------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 5e-08
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 11/177 (6%)
Query: 979 SDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHRE 1038
+ + +P + + +K+ +E +EGL E L E + V +
Sbjct: 290 AAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY 349
Query: 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT 1098
V + VL + A + + + ++ + L
Sbjct: 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI 409
Query: 1099 ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155
E+ + +A +L ++ GP HP + +D+ M ++NE
Sbjct: 410 EVGHGMICKAYAILLVTHGPSHP-----------ITKDLEAMRMQTEMELRMFRQNE 455
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 10/105 (9%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 1059 AIMQQHKELIIN-ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
+++ +E + E + + L E A + R +
Sbjct: 327 EVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386
Query: 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162
++ + + + G ++ + +A G H
Sbjct: 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-08
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMM 1133
GL D A Y + + L + A ++ + P+ A + AM+
Sbjct: 19 SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMV 70
Query: 1134 YQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177
++G+ + + L + + + +E IQ + AI F
Sbjct: 71 LYNLGRYEQGVELLLKIIAETSD---DETIQ----SYKQAILFY 107
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 6e-08
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 24/135 (17%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
LA Y AGD A + PD ++ + + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFS 56
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
+ A+ +P +A + N+ +Y++ G++ A+ + + AL+
Sbjct: 57 TLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF-------- 100
Query: 1166 AVCYHALAIAFNCMG 1180
Y LA A G
Sbjct: 101 IDGYINLAAALVAAG 115
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 32/177 (18%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+G V G L EA + A + P + LA L AGDM GA+
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRL-----KPDFIDGYI---NLAAALVAAGDMEGAVQAY 124
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
L N PD ++ L + E A +A+ P+
Sbjct: 125 VSALQYN--------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNF 168
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
A + N+ ++ G++ A+ + ++A+ + Y L
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--------LDAYINLGNVLKEAR 217
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 4e-07
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 24/151 (15%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+ V +GL+ A + A + + LA L G +A A
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
+ L + P A S N+A E A+R +AL + P+
Sbjct: 295 NTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEF 338
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
AA N+A + Q GK+ AL + +EA++ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 32/180 (17%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+G V A+G + A F +A ++ + L VL A A+
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
+ L ++ P+ A +GN+A Y+ +LA+ RA+ L P
Sbjct: 227 LRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHF 270
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
+ N+A ++ G + A AL+ A + LA G +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH--------ADSLNNLANIKREQGNIE 322
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 9e-08
Identities = 22/142 (15%), Positives = 52/142 (36%)
Query: 982 LNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVAN 1041
L+ P + + A+N++E + SE + + + V + + +
Sbjct: 282 LSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
Query: 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELA 1101
V + D GA+ K + + + + A + + Y GL
Sbjct: 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAG 401
Query: 1102 LRHMSRALLLLSLSSGPDHPDV 1123
+ + +A+ ++ ++ G DHP +
Sbjct: 402 EKALKKAIAIMEVAHGKDHPYI 423
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-04
Identities = 14/111 (12%), Positives = 35/111 (31%)
Query: 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111
H + + + H + E AL++ + +
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369
Query: 1112 LSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162
S +VA+ ++ + +Y + + L++A+ E G++H
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 16/112 (14%)
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
+ + ++A A + P+ ++ ++ L + LA+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKE--------PEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156
++ A +L P V +A+ + + + AL L+ L +
Sbjct: 74 LNHARML-----DPKDIAV---HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 21/127 (16%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
+N +E G L L+EA F P R L +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKD 67
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
AI L LD P + +A+ + + AL + L S
Sbjct: 68 GLAI----IAL---NHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAW-----LLS 114
Query: 1117 GPDHPDV 1123
P + +
Sbjct: 115 QPQYEQL 121
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 14/113 (12%)
Query: 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQ 1135
++ P+ + +A + + AL + PD T+ ++ +Y+
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYE 52
Query: 1136 DIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188
+ + D A+ + ++ G + L A + H H
Sbjct: 53 RLDRTDDAIDTYAQGIEVARE-EGTQKD-----LSELQDAKLKAEGLEHHHHH 99
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 12/158 (7%), Positives = 45/158 (28%), Gaps = 12/158 (7%)
Query: 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA 1053
+ E + ++ + A + + S + ++ +
Sbjct: 283 VWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL 342
Query: 1054 GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113
G + A+ + + HP + A++++ A ++
Sbjct: 343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402
Query: 1114 LSSGPDHPDVAATFINVAMMYQDI-GKMDTALRYLQEA 1150
++ G +H + +D+ ++ ++ +
Sbjct: 403 VTHGREHS-----------LIEDLILLLEECDANIRAS 429
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 3e-06
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190
++G ++ AL Y ++ H V + G F + ++ +
Sbjct: 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395
Query: 1191 KTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQK 1228
+DI+ G E S +D ++ E N++
Sbjct: 396 LAFDIMRVTHGREHSLIEDLILLLE-----ECDANIRA 428
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 18/123 (14%), Positives = 30/123 (24%)
Query: 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTE 1099
L + + N L + L E
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346
Query: 1100 LALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159
AL + +R + + HP + V + G A++ L+ A G
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406
Query: 1160 EEH 1162
EH
Sbjct: 407 REH 409
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 19/190 (10%), Positives = 40/190 (21%), Gaps = 32/190 (16%)
Query: 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071
A + LA GD M +
Sbjct: 3 ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEM-------AVQ 47
Query: 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131
R L L P + + + A + +A P+ + +
Sbjct: 48 RGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLG 98
Query: 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191
+D G+ + A A + L + ++ +
Sbjct: 99 HALEDAGQAEAAAAAYTRAHQLLPEE--------PYITAQLLNWRRRLCDWRALDVLSAQ 150
Query: 1192 TYDILVKQLG 1201
+ + +G
Sbjct: 151 VRAAVAQGVG 160
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 4e-07
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 14/167 (8%)
Query: 1047 AMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMS 1106
A + D I++ K ++N++ G+D + +A Y + +
Sbjct: 122 AAYVLKKVDYEYCILELKK--LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFE 179
Query: 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK-----KNERLLGEE 1161
+ L L + + N A + + +L + +A++ + L+G+
Sbjct: 180 QILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238
Query: 1162 HIQTAVCYHAL-----AIAFNCMGAFKLSHQHEKKTY-DILVKQLGE 1202
+ Q C L I A E Y + LV ++
Sbjct: 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISR 285
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 33/186 (17%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
A L G + L +A L E+ ++ N +LA+ L +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---------HPTPNSYIFLALTLADKENS 292
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
K + +N P+ +Y + Y L + A +A L
Sbjct: 293 QEFFKFFQKAVDLN--------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL----- 339
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176
+P+ +I +A + GK + + E K L A
Sbjct: 340 ---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--------PEVPTFFAEIL 388
Query: 1177 NCMGAF 1182
G F
Sbjct: 389 TDRGDF 394
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 24/151 (15%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+ + E + F +A + + E + + + D A
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDF 333
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
K +N P+ + Y +A + + + + L P +
Sbjct: 334 QKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTL 377
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
A + D G DTA++ A +
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 30/292 (10%), Positives = 78/292 (26%), Gaps = 33/292 (11%)
Query: 1054 GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113
G + ++ A N + A+++ A+ L
Sbjct: 1 GSHMNGEPDIAQLKGLSPS----QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-- 54
Query: 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173
P+ + N++ Y G ++ + + +AL+ + A
Sbjct: 55 ------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH--------SKALLRRA 100
Query: 1174 IAFNCMG----------AFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223
A +G L+ + + + ++++ + + ++N K
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160
Query: 1224 MNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGE 1283
+ F + + + + A+ ++ A S + LL +
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220
Query: 1284 TLPRGRGFDERAARAAAEVRKKAVA---KGLLIRPHGLPAQALPPLTQLLNI 1332
+ A+A G+ A L + +N+
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 31/171 (18%)
Query: 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069
AY L S+A L T + +A L + H L
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGY--------LVANDLLTK-----STDMYHSLLSA 231
Query: 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFIN 1129
N L + A + +F+ N A + ++ L HP + +I
Sbjct: 232 NTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPTPNS-YIF 281
Query: 1130 VAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+A+ D ++ Q+A+ N Y+ + +
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEY--------PPTYYHRGQMYFILQ 324
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 24/159 (15%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+ + +G +E+ F+E + + A +L GD AI Q
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 1064 HKELIINE--------RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115
+ E + + + A++ +++A L
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---- 457
Query: 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
P I +A + + K+D A+ +++
Sbjct: 458 ----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 8e-07
Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 33/187 (17%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
A +L G + + A+ +A + + N Y+A+++ D
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---------VNSYIYMALIMADRNDS 286
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
K L ++ + + Y + L + A + +A L
Sbjct: 287 TEYYNYFDKALKLD--------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----- 333
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176
P+ +I +A + K D EA +K + A
Sbjct: 334 ---DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA--------PEVPNFFAEIL 382
Query: 1177 NCMGAFK 1183
F
Sbjct: 383 TDKNDFD 389
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 32/187 (17%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
M + +E Y F +A + ++ + + + + A
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
K ++ P+ Y +A + N+ + S A P+
Sbjct: 328 DKAKELD--------PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEA 371
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFK 1183
A + D D AL+ A++ + Y +A
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELEN--------KLDGIYVGIAPLVGKATLLT 423
Query: 1184 LSHQHEK 1190
+ E
Sbjct: 424 RNPTVEN 430
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
LA+V + A + K L + A N F + + E A + +
Sbjct: 77 LAVVFQTEMEPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRL 128
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
A +P+ + F N+ ++ + K A Y +++L+ N
Sbjct: 129 LEAS------QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
L + G+ A + K L I+ P +A ++ +A+ + + +LA
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
+AL + V N + + + A + L EA +
Sbjct: 95 RKALAS-----DSRNARV---LNNYGGFLYEQKRYEEAYQRLLEASQ 133
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 22/151 (14%), Positives = 39/151 (25%), Gaps = 22/151 (14%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
G + EAY EA ++ E + L +V A A
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEA------SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
K L +N + MA + + A ++
Sbjct: 165 EKSLRLN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQN 208
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
A + + + + DTA Y + +
Sbjct: 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 17/146 (11%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
+ GD+ A++ + + P ++ + Q LA+ +
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQELLAISAL 121
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG-EEHIQ 1164
R L L PD + +A+ + + A L++ L+ +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173
Query: 1165 TAVCYHALAIAFNCMGAFKLSHQHEK 1190
L + +G+ +
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLE 199
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 25/204 (12%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
+ L++ L E LF A + P + + L ++ +G+ A+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRL-----DPTSID-PDVQCGLGVLFNLSGEYDKAVDCF 240
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
L + P+ + + NQ+E A+ RAL L P
Sbjct: 241 TAALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGY 284
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALK---KNERLLGEEHIQTAVCYHALAIAFNCMG 1180
+ N+ + ++G A+ + EAL K+ GE + + L +A + +G
Sbjct: 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344
Query: 1181 AFKLSHQHEKKTYDILVKQLGEED 1204
+ + L+ G
Sbjct: 345 QSDAYGAADARDLSTLLTMFGLPQ 368
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 23/166 (13%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
++ + +E+GK LA G L++A + F A P + A V G
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGK 52
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL---- 1111
A+ +L + + L D + + + A + L
Sbjct: 53 SKAAL----PDL---TKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104
Query: 1112 ---LSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
S D + A+ D A+ +L + L+
Sbjct: 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 34/196 (17%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
E + L + A T + + E+ A G+
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEV-----CVWDAELRE---LRAECFIKEGEP 170
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
AI + D ++ ++ Y+ L EL+L + L L
Sbjct: 171 RKAISDLKAASKLK--------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL----- 217
Query: 1117 GPDHPDVAATFINV---------AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAV 1167
DH A + V A G+ A + +K T
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVR 273
Query: 1168 CYHALAIAFNCMGAFK 1183
+ F+
Sbjct: 274 SKERICHCFSKDEKPV 289
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 23/166 (13%)
Query: 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055
++ + +E+GK LA G L++A + F A P + A V G
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-----DP---DNYIAYYRRATVFLAMGK 75
Query: 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL---- 1111
A+ +L + + L D + + + A + L
Sbjct: 76 SKAAL----PDL---TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
Query: 1112 ---LSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
S D + A+ G A+ +L + L+
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 34/196 (17%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
E + L G + A + + E+ A G+
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CVWDAELRE---LRAECFIKEGEP 193
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
AI + D ++ ++ Y+ L EL+L + L L
Sbjct: 194 RKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL----- 240
Query: 1117 GPDHPDVAATFINV---------AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAV 1167
DH A + V A G+ A + +K T
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVR 296
Query: 1168 CYHALAIAFNCMGAFK 1183
+ F+
Sbjct: 297 SKERICHCFSKDEKPV 312
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
+ GD+ I+ ++ + P A ++ + + + A+ +
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
R L L P+ + +A+ Y + A L+ +K+N
Sbjct: 123 QRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 28/191 (14%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
+ E G +L EG L A P A ++L + +
Sbjct: 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-----DPGD---AEAWQFLGITQAENENE 115
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
AI + +RCL L P+ + +A+ Y + + A + +
Sbjct: 116 QAAI-------VALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ----- 162
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ----TAVCYHAL 1172
+P N +M + E L H L
Sbjct: 163 ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219
Query: 1173 AIAFNCMGAFK 1183
+ F+ G F
Sbjct: 220 GVLFHLSGEFN 230
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 26/204 (12%)
Query: 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAG 1058
M K + +L L+ EA + + L ++ + +G+
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQN-----GDMID-PDLQTGLGVLFHLSGEFNR 231
Query: 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118
AI + L + P+ + + +++E A+ +RAL +
Sbjct: 232 AIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI------- 276
Query: 1119 DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN----ERLLGEEHIQTAVCYHALAI 1174
P + N+ + ++G A+ AL + + + AL I
Sbjct: 277 -QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335
Query: 1175 AFNCMGAFKLSHQHEKKTYDILVK 1198
A + M +L D+L++
Sbjct: 336 ALSLMDQPELFQAANLGDLDVLLR 359
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 1101 ALRHMSRALLLLSLS---SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157
A H+++A L S PD+ A+ + A+ +++ +++ A + + +
Sbjct: 10 AHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN 69
Query: 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198
A + + + + Q+ +K + V+
Sbjct: 70 --RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 21/190 (11%)
Query: 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136
D+ A Y A+ + Q E A + + + A F MM +D
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQAGMMLKD 88
Query: 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK--KTYD 1194
+ +M A++Y+++A A+A + G K Y
Sbjct: 89 LQRMPEAVQYIEKAS---------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQ 139
Query: 1195 ILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST-QKAIDILKAHPDLI 1253
E+ + ++ K + ++ + AA++ QK + K +
Sbjct: 140 QAAAVFENEERLRQAAELIGKA-------SRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 1254 HAFQAVAAAG 1263
++ A
Sbjct: 193 TCYKKCIAQV 202
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 11/151 (7%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
A L GK+ + LS+A L+ +A ++ + R+ A + +L
Sbjct: 116 AMALDRAGKL-MEPLDLSKAVHLYQQAAAVFEN--EERLRQAAELIGKASRLLVRQQKFD 172
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117
A KE + + ++P L A + + + + S
Sbjct: 173 EAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFS-- 228
Query: 1118 PDHPDVAATFINVAMMY--QDIGKMDTALRY 1146
+ A ++ Y QD ++ R
Sbjct: 229 --GSEDCAALEDLLQAYDEQDEEQLLRVCRS 257
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 20/216 (9%), Positives = 52/216 (24%), Gaps = 50/216 (23%)
Query: 965 ARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLL---------- 1014
++Y + L +Q + ++L + + +
Sbjct: 149 DKRYVI------TNGNQLAIQNDL---------LESLSKALNQPWPQRMQETLQKILPHR 193
Query: 1015 SEAYTLFSEAFSILQQVTGPMHRE----------------VANCCRYLAMVLYHAGDMAG 1058
T F +A L A + L ++ H+
Sbjct: 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253
Query: 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118
I+ + + + Y A+ +T+ + + ++ + L
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------- 306
Query: 1119 DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
++ + +Y+ G A A
Sbjct: 307 -EMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLR 340
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 31/190 (16%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+N +E G L L+EA F P R L +
Sbjct: 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA-----APER---EEAWRSLGLTQAENEKDG 72
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL------ 1111
AI I LD P + +A+ + + AL + LL
Sbjct: 73 LAI-------IALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124
Query: 1112 -LSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYH 1170
S++ D + + + L AL+ N A +
Sbjct: 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--------AQLHA 176
Query: 1171 ALAIAFNCMG 1180
+L + +N
Sbjct: 177 SLGVLYNLSN 186
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 28/202 (13%)
Query: 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063
A E TL A + P ++ L ++ + + A
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEM-----NPNDAQLHAS---LGVLYNLSNNYDSAAANL 195
Query: 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123
+ + + PD A + + N+ + AL +RAL + +P
Sbjct: 196 RRAVELR--------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--------NPGY 239
Query: 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN----ERLLGEEHIQTAVCYHALAIAFNCM 1179
N+A+ Y ++ + D A + L A+ T + + N M
Sbjct: 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299
Query: 1180 GAFKLSHQHEKKTYDILVKQLG 1201
L + + K+ G
Sbjct: 300 NRPDLVELTYAQNVEPFAKEFG 321
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 25/158 (15%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+K E+ +AY + E P + +C A + G
Sbjct: 54 SKLATELALAYKKNRNYDKAYLFYKELLQK-----APNN---VDCLEACAEMQVCRGQEK 105
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTEL-ALRHMSRALLLLSLSS 1116
A+ + E+ L L+ D + + +Y+ + E L + L
Sbjct: 106 DAL-------RMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----- 152
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
+ + + + A LQ+ + +
Sbjct: 153 ---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 16/117 (13%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINE--------RCLGLDHPDTAHSYGNMALFYHGLNQ 1097
AG A+ + + +N + + ++ +AL Y
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 1098 TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
+ A L P+ A M G+ ALR ++ L+
Sbjct: 70 YDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 24/136 (17%)
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
A +L + + + E +N P+ A Y + A++
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVN--------PEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164
+ + P+ A + N A + A+ +A++K+
Sbjct: 162 YTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------- 206
Query: 1165 TAVCYHALAIAFNCMG 1180
Y A A +
Sbjct: 207 -VRAYIRKATAQIAVK 221
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
+ D A+ + + P+ A Y N A L A+
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
++A+ P+ +I A + + +AL L A K+
Sbjct: 197 NKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130
E L D + Y Q + AL H+ AL P + + +
Sbjct: 9 EAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWL 59
Query: 1131 AMMYQDIGKMDTALRYLQEALKKNER 1156
Q G A + + L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQS 85
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 16/123 (13%)
Query: 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTE 1099
+ C + + +M A + + + A +Y + Y+ + +
Sbjct: 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYD 88
Query: 1100 LALRHMSRALLLLSLSSGPDHPDVAATFI--------NVAMMYQDIGKMDTALRYLQEAL 1151
LA++ + AL+ L + D+ + F N+A MY + A L A
Sbjct: 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148
Query: 1152 KKN 1154
Sbjct: 149 SMK 151
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 26/136 (19%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
++ D GA+ + N+ Y L A +
Sbjct: 12 EGVLAADKKDWKGAL-----------DAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF 60
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165
+R++ +A + M+Y K D A++ L+EAL +
Sbjct: 61 TRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------NQ 105
Query: 1166 AVCYHALAIAFNCMGA 1181
+ Y L + F
Sbjct: 106 LIDYKILGLQFKLFAC 121
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 8/184 (4%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
A V+ + L+ A F +A ++ E N G+
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMA-LFYHGLNQTELALRHMSRALLLLSLSS 1116
A+ + I A+ + + + L+ A+ A +
Sbjct: 95 NAVDSLENAIQIF--THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176
FI A + G+ A + +K + + +
Sbjct: 153 --SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-NRLSQWSLKDYFLKKGLCQ 209
Query: 1177 NCMG 1180
Sbjct: 210 LAAT 213
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136
++ +A+ Y A + AL P ++ A +YQ
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQY 54
Query: 1137 IGKMDTALRYLQEALK 1152
+ D A ++AL
Sbjct: 55 LKVNDKAQESFRQALS 70
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 23/158 (14%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
+ ++ + +A +A P + A + +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWL---VRAEIYQYLKVND 59
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALF-YHGLNQTELALRHMSRALLLLSLSS 1116
A + L I PD+A N F LN+ ++ + +AL +
Sbjct: 60 KAQESFRQALSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKAL------A 105
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
P +P +N + G+ A YL+ +L
Sbjct: 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.8 bits (97), Expect = 5e-04
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105
L Y GD AI K L ++ P +A ++ N+ Y+ + A+ +
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYY 58
Query: 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152
+AL L P A + N+ Y G D A+ Y Q+AL+
Sbjct: 59 QKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRH 1104
LA+ L + + ++++ D + A + Y L LA
Sbjct: 10 VLAVPLQPTLQQEVIL-ARMEQIL--ASRALTD-DERAQLLYERGVLYDSLGLRALARND 65
Query: 1105 MSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154
S+AL + PD+ F + + G D A L+ +
Sbjct: 66 FSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1403 | ||||
| d1sgoa_ | 139 | d.82.3.1 (A:) Hypothetical protein c14orf129, hspc | 3e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-05 | |
| d1m94a_ | 73 | d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 | 0.001 | |
| d1bt0a_ | 73 | d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t | 0.002 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.002 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.004 |
| >d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210 {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: N domain of copper amine oxidase-like superfamily: Hypothetical protein c14orf129, hspc210 family: Hypothetical protein c14orf129, hspc210 domain: Hypothetical protein c14orf129, hspc210 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (235), Expect = 3e-23
Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 189 SLSTSLALQYEMAQSKVSSSGDAAKTEVPELDGLGFMEDVSGSLGKLLSSSTQEIKCVES 248
LS+ + ++ D L+ + DV ++ + +S
Sbjct: 9 ELSSMSGFEEG-SELNGFEGTDMKDMR---LEAEAVVNDVLFAVN--------NMFVSKS 56
Query: 249 IVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANS 308
+ + D+ Y++V T E ++YC+ T V + +D
Sbjct: 57 LRCAD------------DVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYH 104
Query: 309 EATTLIGLLQKISSKFKKAFREILDRKASA 338
E T+ LL +S +++AF L ++ A
Sbjct: 105 E--TVYSLLDTLSPAYREAFGNALLQRLEA 132
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.8 bits (146), Expect = 5e-10
Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 32/186 (17%)
Query: 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1054
+ A + V +GL+ A + A + + LA L G
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKG 285
Query: 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114
+A A + L P A S N+A E A+R +AL +
Sbjct: 286 SVAEAEDCYNTALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--- 334
Query: 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174
P+ AA N+A + Q GK+ AL + +EA++ + A Y +
Sbjct: 335 -----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--------ADAYSNMGN 381
Query: 1175 AFNCMG 1180
M
Sbjct: 382 TLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 8e-07
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 32/213 (15%)
Query: 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC 1042
+K + A +G V A+G + A F +A ++ +
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDA 205
Query: 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELAL 1102
L VL A A+ + L ++ A +GN+A Y+ +LA+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNH--------AVVHGNLACVYYEQGLIDLAI 257
Query: 1103 RHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162
RA+ L P + N+A ++ G + A AL+
Sbjct: 258 DTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------C 301
Query: 1163 IQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195
A + LA G + + + +K ++
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 16/143 (11%)
Query: 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRY 1146
+A + E A RH + PD + ++ ++ ++D + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 1147 LQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR 1206
A+K+N L A Y L + G + + +H + + + +
Sbjct: 56 STLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 1207 TKDSQNWMKTFKMRELQMNVQKQ 1229
+ ++ +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQY 130
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (119), Expect = 8e-07
Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 7/176 (3%)
Query: 982 LNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVAN 1041
V S + + L + + LA G L A + + ++L ++N
Sbjct: 156 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISN 214
Query: 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELA 1101
+ + GD A A + + N+A L + E A
Sbjct: 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN----NHFLQGQWRNIARAQILLGEFEPA 270
Query: 1102 LRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157
+ S D+ + + +Y G+ A R L +ALK R
Sbjct: 271 EIVLEELNENAR--SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 21/175 (12%), Positives = 52/175 (29%), Gaps = 26/175 (14%)
Query: 1038 EVANCCRYLAMVLYHAGDMAGAI-------MQQHKELIINERCLGLDHPDTAHSYGNMAL 1090
E A + V + G A+ E ++E+ ++ N+A+
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150
Y L + A+ + + + + ++A ++
Sbjct: 73 CYLKLREYTKAVECCDK--------ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124
Query: 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205
L+ N Q + + + +++TY + K+ E+D+
Sbjct: 125 LEVNP--------QNKAARLQIFMCQKKAKEHN---ERDRRTYANMFKKFAEQDA 168
|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like modifier protein hub1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (84), Expect = 0.001
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEI 145
V V + +K+ ++ DSV D ++ L T + LEDY +
Sbjct: 4 VVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE-V 62
Query: 146 SEVADITTGGCTLEM 160
+ LE+
Sbjct: 63 HD-------QTNLEL 70
|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Rub1 species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.0 bits (83), Expect = 0.002
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLD----APETCFFTCYDLVLHTKDGSTHHLED 141
+ VKT + +++E+ + P D++ I++ + + P L D T +D
Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQL--ADDKT--AKD 58
Query: 142 YNEISEVADITTGGCTLEMVAAL 164
YN I G L +V AL
Sbjct: 59 YN-IEG-------GSVLHLVLAL 73
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057
A++ E+GKV E +A L + + + YL+ +Y GD+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLD 63
Query: 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQ 1097
A++ K L ++ P+ + GN+ F + + +
Sbjct: 64 KALLLTKKLLELD--------PEHQRANGNLKYFEYIMAK 95
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.004
Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 30/222 (13%)
Query: 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM 1056
A+ L E G EA + A + + VA A+
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQP 54
Query: 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116
A+ + L ++ + ++ + + + A+ ++ RA L
Sbjct: 55 EQALADCRRALELD--------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL----- 101
Query: 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176
+ F + I K + + R+ E + + + A
Sbjct: 102 ---AKEQRLNFGDDIPSALRIAK------KKRWNSIEERRIHQESELHSYLTRLIAAERE 152
Query: 1177 NCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218
+ + +H+ + I +Q E K + + F
Sbjct: 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1403 | |||
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.75 | |
| d1sgoa_ | 139 | Hypothetical protein c14orf129, hspc210 {Human (Ho | 99.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.56 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.92 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 96.51 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 95.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.33 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 95.25 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 95.18 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 94.89 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 94.55 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 94.53 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 94.46 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 94.32 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 94.27 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 94.11 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 93.92 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 93.54 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 93.49 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.46 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 92.71 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 92.45 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 92.23 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 90.74 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 89.92 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 89.52 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 88.68 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 88.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.97 |
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.8e-16 Score=146.76 Aligned_cols=316 Identities=13% Similarity=0.028 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25899999999999990997999999999999999840999988999999999999922999999999999999999941
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~l 1074 (1403)
...++.....|.+++..|++++|+.++++++..... ...+..+.++..+|.+|..+|++++|+.++++++.+....
T Consensus 9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~- 84 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 84 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-
T ss_conf 213999999999999888999999999999854868---9967999999999999998799999999999999998750-
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99995699999999999998799999999999999999750699998799999999999999499999999999999999
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~ 1154 (1403)
.+.+.....+.+++.++...+++..|...+.+++.+.....+...+..+..+..+|.++...|+++.|..++.+++...
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 85 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 163 (366)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf -1148999999888788788888999998899999986750341256788899888789998145666689999988876
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99709796889999999999999939979999999999999999719999899999999999997889999931699999
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
... ........+..++..+...+++..+..++.++..+.... +...+........++.++ ...+++++|.
T Consensus 164 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~a~ 233 (366)
T d1hz4a_ 164 SSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYW------QMTGDKAAAA 233 (366)
T ss_dssp TTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHH------HHTTCHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHH------HHCCCHHHHH
T ss_conf 630---024689999888888876466788889999999999873-115726999999999999------8604489899
Q ss_pred HHHHHHHHHHHHHH-CHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999851-967999999999----9299099999999999986529998344152999999999999999994
Q 000589 1235 NAASTQKAIDILKA-HPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAK 1309 (1403)
Q Consensus 1235 ~~l~~qkALei~~~-~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~hp~~~~~~era~~a~~e~r~l~~a~ 1309 (1403)
..+. +++.+... .+.....+.+++ ..|++.+|..++++++.........+.... .....
T Consensus 234 ~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~l 297 (366)
T d1hz4a_ 234 NWLR--HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR--------------NLLLL 297 (366)
T ss_dssp HHHH--HSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------------HHHHH
T ss_pred HHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH--------------HHHHH
T ss_conf 9999--9997622466677788999999998758799999999999988764266747999--------------99999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 37773089911013999999997821899998
Q 000589 1310 GLLIRPHGLPAQALPPLTQLLNIINSSGATPD 1341 (1403)
Q Consensus 1310 G~~~~~~g~~~eA~~~l~qaL~l~~s~g~~~~ 1341 (1403)
|.++..+|++++|+..+++++.+....|....
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~ 329 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALKLANRTGFISH 329 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999878999999999999997653182999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.9e-18 Score=158.29 Aligned_cols=275 Identities=16% Similarity=0.206 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----
Q ss_conf 9999999999999099799999999999999984099998899999999999992299999999999999999994----
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC---- 1073 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~---- 1073 (1403)
...++.+|.++...|++++|+.++++++.+ +|..+.++..+|.+|..+|++++|+..+.+++......
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 104 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999999869999999999999985--------999899999999996420002222222221211222222222
Q ss_pred --------------------------------------------------------CCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf --------------------------------------------------------199995699999999999998799
Q 000589 1074 --------------------------------------------------------LGLDHPDTAHSYGNMALFYHGLNQ 1097 (1403)
Q Consensus 1074 --------------------------------------------------------lg~d~p~~a~a~~nLA~~~~~~g~ 1097 (1403)
.....|.....+..+|.++...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (388)
T d1w3ba_ 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 22222222222222222221112222222222222222222110001356788887402586106899863630102471
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999975069999879999999999999949999999999999999999709796889999999999999
Q 000589 1098 TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1098 ~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~ 1177 (1403)
+++|..++.+++.+ +|....++..+|.++...|++++|+..++++..+. +.....+..+|.++.
T Consensus 185 ~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~ 248 (388)
T d1w3ba_ 185 IWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_conf 99999999999984--------94649999997155220052999999999857775--------547999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 93997999999999999999971999989999999999999788999993169999999989999999851967999999
Q 000589 1178 CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQ 1257 (1403)
Q Consensus 1178 ~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~ 1257 (1403)
..|++++|+.++++++++ .+++ ..++..++.++ ..++++.+|+..+. +++...+..+.....+.
T Consensus 249 ~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~------~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIEL-----QPHF---PDAYCNLANAL------KEKGSVAEAEDCYN--TALRLCPTHADSLNNLA 312 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT-----CSSC---HHHHHHHHHHH------HHHSCHHHHHHHHH--HHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHH------HHCCCHHHHHHHHH--HHHCCCCCCCHHHHHHH
T ss_conf 878999999999999984-----9998---99999999999------97487999999998--65404873001015799
Q ss_pred HHH-HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999-929909999999999998652999834415299999999999999999437773089911013999999997
Q 000589 1258 AVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1258 ~La-~~G~~~eA~~~~ekAL~~~~~G~~hp~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~l 1332 (1403)
.+. ..|++++|+.+|+++++. +|.... .....|.++...|++++|+..|++++++
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~------~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEV------FPEFAA--------------AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS------CTTCHH--------------HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHH------CCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999878999999999999986------889899--------------9999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-15 Score=139.37 Aligned_cols=238 Identities=15% Similarity=0.103 Sum_probs=185.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999990997999999999999999840999988999999999999922999999999999999999941999956
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
.++.|..++..|++++|+..|++++.. +|..+.++..+|.+|..+|++++|+.++.+++.+ .|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 85 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD 85 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--------CCC
T ss_conf 999999999859999999999999986--------8998999999999999837758899999851002--------222
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999998799999999999999999750699-9987999------9999999999949999999999999999
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP-DHPDVAA------TFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1081 ~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~-d~p~~a~------~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
....+.++|.++...|++++|+..+.+++.+....... ....... ........+...+.+.+|+..+.+++.+
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22222222222222221121110002677736106788876640000000100001478888765799999999999997
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 99970979688999999999999993997999999999999999971999989999999999999788999993169999
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. ++. ..+.++..+|.++...|++++|+.++++++.. .+ ....++..++.++ ..+|++++|
T Consensus 166 ~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~------~~~g~~~~A 225 (323)
T d1fcha_ 166 D-----PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RP---NDYLLWNKLGATL------ANGNQSEEA 225 (323)
T ss_dssp S-----TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHH------HHTTCHHHH
T ss_pred H-----HCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-----CC---CCCCCHHHHHHCC------CCCCCCHHH
T ss_conf 1-----301-22211103688888888775500211122222-----22---2211101333012------211110137
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHH
Q ss_conf 999989999999851967999999999----9299099999999999986
Q 000589 1234 FNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAA 1279 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~ 1279 (1403)
+..+. +++++. |....++.++| .+|++++|+.+|++|++..
T Consensus 226 ~~~~~--~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 226 VAAYR--RALELQ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHH--HHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHH---HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 88877--899884---3249999999999998789999999999999709
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.6e-15 Score=137.28 Aligned_cols=213 Identities=21% Similarity=0.224 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999099799999999999999984099998899999999999992299999999999999999994199
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+..+|..+...|++++|..++.+++.+ +|....++..+|.++...|++++|+..+++++..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 232 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL------- 232 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------
T ss_conf 0689986363010247199999999999984--------9464999999715522005299999999985777-------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99569999999999999879999999999999999975069999879999999999999949999999999999999999
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~ 1156 (1403)
.+.....+.++|.++...|++++|+.+|++++.+ +|....++.++|.++...|++++|+.+++.++...
T Consensus 233 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 301 (388)
T d1w3ba_ 233 -SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-- 301 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--
T ss_conf -5547999999999999878999999999999984--------99989999999999997487999999998654048--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 70979688999999999999993997999999999999999971999989999999999999788999993169999999
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+.....+..+|.++...|++++|+.++++++++ +|....++.+++.++ ..+|++++|+..
T Consensus 302 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~------~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 302 ------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVL------QQQGKLQEALMH 361 (388)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHH------HTTTCCHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH------HHCCCHHHHHHH
T ss_conf ------730010157999999878999999999999986--------889899999999999------985999999999
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 989999999851967999999999
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
++ +++++ +|+...++.+||
T Consensus 362 ~~--~al~l---~P~~~~a~~~lg 380 (388)
T d1w3ba_ 362 YK--EAIRI---SPTFADAYSNMG 380 (388)
T ss_dssp HH--HHHTT---CTTCHHHHHHHH
T ss_pred HH--HHHHH---CCCCHHHHHHHH
T ss_conf 99--99970---999899999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3e-13 Score=120.45 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25899999999999990997999999999999999840999988999999999999922999999999999999999941
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~l 1074 (1403)
...+..+..+|.++...|++++|+.++.+++.+.... .+.+..+.++..++.++...|++..|...+.+++.+.....
T Consensus 48 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~ 125 (366)
T d1hz4a_ 48 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999998799999999999999998750--11489999998887887888889999988999999867503
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99995699999999999998799999999999999999750699998799999999999999499999999999999999
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~ 1154 (1403)
....+.....+..+|.++...|+++.|..++.+++...... ........+..++..+...+++..+...+.++..+.
T Consensus 126 ~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 202 (366)
T d1hz4a_ 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 202 (366)
T ss_dssp CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41256788899888789998145666689999988876630---024689999888888876466788889999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99709796889999999999999939979999999999999999719999899999999999997889999931699999
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
... +...+.....+..++.++...|++++|..++++++.+. ...++........++.++ ...|++++|.
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~la~~~------~~~g~~~~A~ 271 (366)
T d1hz4a_ 203 GNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQ------ILLGEFEPAE 271 (366)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC----CTTCGGGHHHHHHHHHHH------HHTTCHHHHH
T ss_pred HHH-CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHH------HHCCCHHHHH
T ss_conf 873-11572699999999999986044898999999999762----246667778899999999------8758799999
Q ss_pred HHHHHHHHHHHHH---HCHHHHHHHHHHH----HHCCHHHHHHHHHHHHHH
Q ss_conf 9998999999985---1967999999999----929909999999999998
Q 000589 1235 NAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1235 ~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
..++ +++.... ..|....++..+| .+|++++|...+++|+..
T Consensus 272 ~~~~--~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 272 IVLE--ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999--999887642667479999999999999878999999999999997
|
| >d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: N domain of copper amine oxidase-like superfamily: Hypothetical protein c14orf129, hspc210 family: Hypothetical protein c14orf129, hspc210 domain: Hypothetical protein c14orf129, hspc210 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.8e-17 Score=150.77 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=78.7
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 23220000245568898321347868999999707928999982381486158998559999999887554999998861
Q 000589 242 EIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLLQKIS 321 (1403)
Q Consensus 242 ~~~~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~it~~~~GFyvn~s~~~~fdp~p~~~~~~~~sL~~Ll~~~S 321 (1403)
....|+.|.+|.|-|. .+||+||+|+|+||++||||+|++|||||+|+.++|||.|..+ .+|||++||.+||
T Consensus 44 v~f~V~~i~vS~~Lp~------t~dl~YLnv~TlEg~~~cIt~t~~GF~Vn~s~~d~fdp~~~~~--~~etl~~LL~~iS 115 (139)
T d1sgoa_ 44 VLFAVNNMFVSKSLRC------ADDVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTP--YHETVYSLLDTLS 115 (139)
T ss_dssp HGGGSSEEEECCSSCE------ETTEEEEEEECTTCCEEEEEEETTEEEEEESSTTCCCTTCCCC--EESSSHHHHHHHC
T ss_pred HHHHHHHEECCCCCCC------CCCEEEEEEEEECCCEEEEEEECCEEEEECCCCCCCCCCCCCC--CCCCHHHHHHHHC
T ss_conf 9998763352356898------7758999999815985999995575899525566559985664--3226999998769
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999964227
Q 000589 322 SKFKKAFREILDRKASA 338 (1403)
Q Consensus 322 ~~F~~~~~~l~~~~~~~ 338 (1403)
|+|+++|.+.|.+++++
T Consensus 116 P~f~~~F~~~L~~kLe~ 132 (139)
T d1sgoa_ 116 PAYREAFGNALLQRLEA 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.2e-12 Score=115.57 Aligned_cols=193 Identities=11% Similarity=-0.049 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999990997999999999999999840999988999999999999922999999999999999999941999
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d 1077 (1403)
+..|...|.+|...++|++|+.+|.+|+.++... .+.+..+.+|.++|.+|..+|++++|+.++++++.+.... .+
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~ 112 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQ 112 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--CC
T ss_conf 9999999999998869999999999999999875--9988999999999999998088588899999766776532--53
Q ss_pred CHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95699999999999998-79999999999999999975069999879999999999999949999999999999999999
Q 000589 1078 HPDTAHSYGNMALFYHG-LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~a~a~~nLA~~~~~-~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~ 1156 (1403)
......++.++|.+|.. .+++++|+.+|++|+.+.... ...+....++.++|.++..+|+|++|+.+|++++.....
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 205899999988867647878999988999999998733--760333468899999999817399999999999986813
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 70979688999999999999993997999999999999999
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
.. .........+..++.++...+++..|...++++..+..
T Consensus 191 ~~-~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 191 NR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp CT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 32-45556999999999999984659999999999997597
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.3e-13 Score=121.38 Aligned_cols=217 Identities=9% Similarity=-0.008 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999099799999999999999984099998899999999999992299999999999999999994199
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++.+|.++...|++++|+.++.+++.+ .|.....+..+|.+|..+|++++|+..+.+++.+.......
T Consensus 52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 123 (323)
T d1fcha_ 52 HMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf 8999999999999837758899999851002--------22222222222222222221121110002677736106788
Q ss_pred CC-HHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99-5699------9999999999987999999999999999997506999987999999999999994999999999999
Q 000589 1077 DH-PDTA------HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1077 d~-p~~a------~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lek 1149 (1403)
.. .... .........+...+.+.+|+..+.+++.+. ++. ....++..+|.++...|++++|+.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 197 (323)
T d1fcha_ 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-----PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTA 197 (323)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-----TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8766400000001000014788887657999999999999971-----301-2221110368888888877550021112
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999997097968899999999999999399799999999999999997199998999999999999978899999316
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ 1229 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~ 1229 (1403)
++... +....++..+|.+|..+|++++|+.++++++++ .+++ ..++..+|.++ ..+|+
T Consensus 198 al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~------~~~g~ 255 (323)
T d1fcha_ 198 ALSVR--------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGY---IRSRYNLGISC------INLGA 255 (323)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHH------HHHTC
T ss_pred CCCCC--------CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH-----HHCC---HHHHHHHHHHH------HHCCC
T ss_conf 22222--------222111013330122111101378887789988-----4324---99999999999------98789
Q ss_pred HHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 9999999989999999851967
Q 000589 1230 KGQAFNAASTQKAIDILKAHPD 1251 (1403)
Q Consensus 1230 ~~eAi~~l~~qkALei~~~~p~ 1251 (1403)
+++|+..+. +++++.+.++.
T Consensus 256 ~~~A~~~~~--~al~l~p~~~~ 275 (323)
T d1fcha_ 256 HREAVEHFL--EALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHHH--HHHHHHHTC--
T ss_pred HHHHHHHHH--HHHHHCCCCHH
T ss_conf 999999999--99970975700
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.2e-13 Score=117.92 Aligned_cols=237 Identities=11% Similarity=0.130 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Q ss_conf 875258999999999999909979999999999999998409999889999999999999229-9999999999999999
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G-~~eeAi~~~~kAL~i~ 1070 (1403)
......+..+..+|.++..++.+++|+.++.+|+.+ .|....+++++|.++..++ ++++|+.++.+++.+
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~- 107 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE- 107 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_conf 269779999999999999588669999999999987--------98876999999999998376799999999999988-
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99419999569999999999999879999999999999999975069999879999999999999949999999999999
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1071 er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekA 1150 (1403)
+|....++.++|.++..+|++++|+.++.+++.+ +|....++.++|.++..++++++|+.+++++
T Consensus 108 -------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 108 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------7742268988758888505378899887555432--------1004688998877888888667899999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997097968899999999999999399------7999999999999999971999989999999999999788999
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGA------FKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQM 1224 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd------~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~ 1224 (1403)
+++. |....+++++|.++...+. +.+|+.++.+++.+ .|++ ..++.+++.++
T Consensus 173 l~~~--------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-----~P~~---~~~~~~l~~ll------ 230 (315)
T d2h6fa1 173 LKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHN---ESAWNYLKGIL------ 230 (315)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHH------
T ss_pred HHHC--------CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHH------
T ss_conf 9879--------744999988999998745631023547767999999984-----9885---69999987798------
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHH---HHCCHHHHHHHHHHHHH
Q ss_conf 99316999999998999999985196--7999999999---92990999999999999
Q 000589 1225 NVQKQKGQAFNAASTQKAIDILKAHP--DLIHAFQAVA---AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1225 ~~qg~~~eAi~~l~~qkALei~~~~p--~~~~a~~~La---~~G~~~eA~~~~ekAL~ 1277 (1403)
. .....++...+. +++++...+. .....+...- ..+....+...+.+++.
T Consensus 231 ~-~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 231 Q-DRGLSKYPNLLN--QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp T-TTCGGGCHHHHH--HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HCCHHHHHHHHH--HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 8-627188999999--999728775789999999999999983587879999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.5e-12 Score=114.83 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999999229999999999999999999419999569999999999999879999999999999999975069
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g 1117 (1403)
..+..|...|.+|..+++|++|+..|.+|+.+.... .+++..+.+|.++|.+|..+|++++|+.++++++.+....
T Consensus 35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-- 110 (290)
T d1qqea_ 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-- 110 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--
T ss_conf 999999999999998869999999999999999875--9988999999999999998088588899999766776532--
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9998799999999999999-499999999999999999997097968899999999999999399799999999999999
Q 000589 1118 PDHPDVAATFINVAMMYQD-IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~il~~-~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
........++.++|.+|.. .+++++|+.+|++|+++.... ........++.++|.+|..+|+|++|+.++++++.+.
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 53205899999988867647878999988999999998733--7603334688999999998173999999999999868
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHH---H---HCCHHHH
Q ss_conf 99719999899999999999997889999931699999999899999998519679--99999999---9---2990999
Q 000589 1197 VKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDL--IHAFQAVA---A---AGGSGNS 1268 (1403)
Q Consensus 1197 ~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~--~~a~~~La---~---~G~~~eA 1268 (1403)
.... ..+......+..++.++ ...+++..|...+. +++++.+..+.. ...+..+. . ...+.+|
T Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~------l~~~d~~~A~~~~~--~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~ea 259 (290)
T d1qqea_ 189 MGNR-LSQWSLKDYFLKKGLCQ------LAATDAVAAARTLQ--EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (290)
T ss_dssp SSCT-TTGGGHHHHHHHHHHHH------HHTTCHHHHHHHHH--GGGCC---------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHH--HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 1332-45556999999999999------98465999999999--999759774443999999999999983689999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000589 1269 GASANNS 1275 (1403)
Q Consensus 1269 ~~~~ekA 1275 (1403)
+..|.++
T Consensus 260 i~~y~~~ 266 (290)
T d1qqea_ 260 CKEFDNF 266 (290)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
T ss_conf 9999887
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.1e-13 Score=118.59 Aligned_cols=205 Identities=9% Similarity=0.087 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 9889999999999999229999999999999999999419999569999999999999879-999999999999999975
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN-QTELALRHMSRALLLLSL 1114 (1403)
Q Consensus 1036 ~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g-~~~eAl~~l~kAL~l~~~ 1114 (1403)
.|..+.++.++|.++...+.+++|+..+.+|+.+ .|....+|.++|.++..++ ++++|+.++.+++.+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--- 107 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 107 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
T ss_conf 9779999999999999588669999999999987--------98876999999999998376799999999999988---
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 06999987999999999999994999999999999999999970979688999999999999993997999999999999
Q 000589 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1115 ~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~ 1194 (1403)
+|....++.++|.++..+|++++|+.++.+++++. |....++.++|.++...|++++|+.++++++.
T Consensus 108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----77422689887588885053788998875554321--------00468899887788888866789999999998
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH---HHCCHHHHHHH
Q ss_conf 999971999989999999999999788999993169999999989999999851967999999999---92990999999
Q 000589 1195 ILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA---AAGGSGNSGAS 1271 (1403)
Q Consensus 1195 i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La---~~G~~~eA~~~ 1271 (1403)
+ +|....++.+++.++.........+.+.+|+..+. +++.+.+.++ .++..++ ......++...
T Consensus 175 ~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~--~al~~~P~~~---~~~~~l~~ll~~~~~~~~~~~ 241 (315)
T d2h6fa1 175 E--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL--EMIKLVPHNE---SAWNYLKGILQDRGLSKYPNL 241 (315)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH--HHHHHSTTCH---HHHHHHHHHHTTTCGGGCHHH
T ss_pred H--------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHHHCCCCH---HHHHHHHHHHHHCCHHHHHHH
T ss_conf 7--------97449999889999987456310235477679999--9998498856---999998779886271889999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000589 1272 ANNSLN 1277 (1403)
Q Consensus 1272 ~ekAL~ 1277 (1403)
+++++.
T Consensus 242 ~~~~~~ 247 (315)
T d2h6fa1 242 LNQLLD 247 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999997
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=7e-12 Score=109.28 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 88999999999999922999999999999999999941999956999999999999987999999999999999997506
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116 (1403)
Q Consensus 1037 p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~ 1116 (1403)
+..+.+++.+|.+|..+|++++|+..|++++.+ .|....++.++|.++..+|++++|+.+|++++.+.
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 101 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---- 101 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--------CCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 999999999999999879999999999985434--------99988999600427888777887523446899987----
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999879999999999999949999999999999999
Q 000589 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1117 g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
|....++.++|.++..+|++++|+..+++++++
T Consensus 102 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 102 ----PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----611115888999999876679999999999865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.3e-11 Score=105.04 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 52589999999999999099799999999999999984099998899999999999992299999999999999999994
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~ 1073 (1403)
....+..++.+|.+|...|++++|+..|.+++.+ +|..+.++..+|.+|..+|++++|+..|++++.+
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---- 100 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 100 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--------CCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 9999999999999999879999999999985434--------9998899960042788877788752344689998----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 19999569999999999999879999999999999999975069999879999999999999949999999999999999
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1074 lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
+|....++.++|.++..+|++++|+..+++++.+. +.+ ......++..+...+..+.+..........
T Consensus 101 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 101 ----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND---PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----76111158889999998766799999999998653-----000---788899999998853587899999876403
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 99970979688999999999999993997999999999999999971999989999999999999788999993169999
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
.............++. ....+.+..+...+..+..+ .+....++.++|.++ ..+|++++|
T Consensus 169 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~------~~~g~~~~A 228 (259)
T d1xnfa_ 169 -----DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYY------LSLGDLDSA 228 (259)
T ss_dssp -----CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHHHHHHHH------HHTTCHHHH
T ss_pred -----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHH------HHCCCHHHH
T ss_conf -----1444345577888888-77777899999999986640--------845099999999999------987899999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999989999999
Q 000589 1234 FNAASTQKAIDI 1245 (1403)
Q Consensus 1234 i~~l~~qkALei 1245 (1403)
+..++ +++..
T Consensus 229 ~~~~~--~al~~ 238 (259)
T d1xnfa_ 229 TALFK--LAVAN 238 (259)
T ss_dssp HHHHH--HHHTT
T ss_pred HHHHH--HHHHC
T ss_conf 99999--99983
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=5.9e-10 Score=93.59 Aligned_cols=221 Identities=4% Similarity=-0.145 Sum_probs=159.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999999099799999999999999984099998899999999999992299--99999999999999999419999569
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD--MAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~--~eeAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
.+..+...+++.+|+.++.+++.. +|....++..+|.++...++ +++|+..+.+++.+. ....
T Consensus 79 ~~~~~~~~~~~~~al~~~~~~l~~--------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~ 143 (334)
T d1dcea1 79 EKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNF 143 (334)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------CHHH
T ss_conf 003477877899999999999986--------8886798988648998843042899999999998559-------2121
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999987999999999999999997506999987999999999999994999999999999999999970979
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+..+|.++...+.+++|+.++++++.+ +|....++.++|.++..+|++++|+..+.+++.+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 210 (334)
T d1dcea1 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK----- 210 (334)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----
T ss_conf 111057899987445528999999998871--------8987999999999999826889899988776776899-----
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 68899999999999999399799999999999999997199998999999999999978899999316999999998999
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
... +...+...+..++|...+.+++... +.. ......++..+ ...+++.+|+..+.
T Consensus 211 ---~~~----~~~~~~~l~~~~~a~~~~~~~l~~~-----~~~---~~~~~~l~~~~------~~~~~~~~a~~~~~--- 266 (334)
T d1dcea1 211 ---ELE----LVQNAFFTDPNDQSAWFYHRWLLGR-----AEP---LFRCELSVEKS------TVLQSELESCKELQ--- 266 (334)
T ss_dssp ---HHH----HHHHHHHHCSSCSHHHHHHHHHHSC-----CCC---SSSCCCCHHHH------HHHHHHHHHHHHHH---
T ss_pred ---HHH----HHHHHHHHCCHHHHHHHHHHHHHHC-----CCH---HHHHHHHHHHH------HHHHHHHHHHHHHH---
T ss_conf ---999----9999988244148899999887718-----660---56788799999------99866999999999---
Q ss_pred HHHHHHHCHHHHHHHHHHH----HHCCHHHHHHHHHHHHHH
Q ss_conf 9999851967999999999----929909999999999998
Q 000589 1242 AIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1242 ALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
+....+|....++..+| ..|++++|+.+|+++++.
T Consensus 267 --~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 267 --ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp --HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred --HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf --887629137999999999998789999999999999987
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.7e-09 Score=89.80 Aligned_cols=195 Identities=6% Similarity=-0.145 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999909--97999999999999999840999988-9999999999999229999999999999999999419
Q 000589 999 KNLVEMGKVQLAEG--LLSEAYTLFSEAFSILQQVTGPMHRE-VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G--~~eeA~~~l~eAL~l~~qi~g~~~p~-~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg 1075 (1403)
..++.+|.++...+ ++++|+..+.+++.+ +|. ....+..+|.++...+.+++|+.++++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~------ 173 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR------ 173 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC------
T ss_conf 9898864899884304289999999999855--------92121111057899987445528999999998871------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99956999999999999987999999999999999997506999987999999999999994999999999999999999
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1076 ~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~ 1155 (1403)
+|....++.++|.++..+|++++|+..+.+++.+... . ..+...+..++..++|...+.+++...
T Consensus 174 --~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~----~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 174 --NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK--------E----LELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp --TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH--------H----HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred --CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHCCHHHHHHHHHHHHHHC-
T ss_conf --8987999999999999826889899988776776899--------9----999999988244148899999887718-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 97097968899999999999999399799999999999999997199998999999999999978899999316999999
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN 1235 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~ 1235 (1403)
+.....+..++.++...+++.+|+..+.+++. .+|....++..++.++ ..+|++++|+.
T Consensus 239 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~------~~~~~~~eA~~ 297 (334)
T d1dcea1 239 -------AEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRAL------DPLLYEKETLQ 297 (334)
T ss_dssp -------CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH------CTGGGHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHH------HHCCCHHHHHH
T ss_conf -------66056788799999998669999999998876--------2913799999999999------87899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9989999999
Q 000589 1236 AASTQKAIDI 1245 (1403)
Q Consensus 1236 ~l~~qkALei 1245 (1403)
.++ +++++
T Consensus 298 ~~~--~ai~l 305 (334)
T d1dcea1 298 YFS--TLKAV 305 (334)
T ss_dssp HHH--HHHHH
T ss_pred HHH--HHHHH
T ss_conf 999--99987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.6e-09 Score=90.11 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999099799999999999999984099998899999999999992299999999999999999994199
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~ 1076 (1403)
++..+++.|..+...|+|+.|++.|.++ .+.+ +.+++++|.+|..+|++++|+..|++|+.+
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------- 65 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR------- 65 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHC--------CCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------
T ss_conf 9999999999999877999999999864--------8988---999999999999858914678789999998-------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------CCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 995699999999999998799999999999999999750-------699-998799999999999999499999999999
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS-------SGP-DHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1077 d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~-------~g~-d~p~~a~~~~nLA~il~~~g~~eeAl~~le 1148 (1403)
.|..+.+|.++|.++..+|++++|+..|++|+...... .+. .......+++++|.++..+|++++|++.+.
T Consensus 66 -dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 66 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf -5523466788999998542499999999999986726736789986654363058899999999999789999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000589 1149 EALKKN 1154 (1403)
Q Consensus 1149 kAL~l~ 1154 (1403)
+|+.+.
T Consensus 145 ~A~~~~ 150 (192)
T d1hh8a_ 145 LATSMK 150 (192)
T ss_dssp HHHTTC
T ss_pred HHHHCC
T ss_conf 998369
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.5e-09 Score=85.67 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999992299999999999999999994199995699999999999998799999999999999999750699998
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p 1121 (1403)
.+.+.|..+...|+|++|+..|.++ .+.+ ..++.++|.+|..+|++++|+.+|++|+.+ .|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC--------CCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HH
T ss_conf 9999999999877999999999864--------8988---999999999999858914678789999998--------55
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------HCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 799999999999999499999999999999999997-------097-968899999999999999399799999999999
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL-------LGE-EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1122 ~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~-------~G~-~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl 1193 (1403)
..+.+++++|.++..+|++++|+..|++|+...... .+. .......+++++|.+|..+|++++|++.+++|+
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 23466788999998542499999999999986726736789986654363058899999999999789999999999998
Q ss_pred HH
Q ss_conf 99
Q 000589 1194 DI 1195 (1403)
Q Consensus 1194 ~i 1195 (1403)
.+
T Consensus 148 ~~ 149 (192)
T d1hh8a_ 148 SM 149 (192)
T ss_dssp TT
T ss_pred HC
T ss_conf 36
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=6.8e-10 Score=93.10 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99990997999999999999999840999988999999999999922999999999999999999941999956999999
Q 000589 1007 VQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYG 1086 (1403)
Q Consensus 1007 ~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~ 1086 (1403)
+....+.|+.|+..+.+++.+ .+.....+.++|..+...+++++|+..+.+++... ...++.
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~ 156 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----------CQHCLV 156 (497)
T ss_dssp HHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----------HHHHHH
T ss_conf 999999999999999998789--------91139999985799875899999999999882788----------999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999998799999999999999999750699998799999999999999499999999999999999997097968899
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166 (1403)
Q Consensus 1087 nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a 1166 (1403)
+||.++...+++++|+.+|++|+.+ .|.....+++||.++...|++.+|+.+|.+|+.+. +...
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~ 220 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--------FPFP 220 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CCCH
T ss_conf 9999999802478999999999987--------89965999999999998699999999999998179--------9978
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 000589 1167 VCYHALAIAFNC 1178 (1403)
Q Consensus 1167 ~~~~~LA~iy~~ 1178 (1403)
.++.+|+.++..
T Consensus 221 ~a~~nL~~~~~~ 232 (497)
T d1ya0a1 221 AASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=7.4e-08 Score=76.47 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999990997999999999999999840999988999999999999922999999999999999999941999
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d 1077 (1403)
|..+...|..++..|+|++|+.+|.+++.+ +|..+.++.++|.+|..+|++++|+..+.+++.+
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------- 73 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 73 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--------
T ss_conf 999999999999958999999986602110--------0011333245678887405421288889999987--------
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9569999999999999879999999999999999
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l 1111 (1403)
.|....++.++|.++..+|++++|+..+++++.+
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5446687799999999949999999989999872
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.96 E-value=4e-06 Score=62.36 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999099799999999999999984099998899999999999992----299999999999999999994
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH----AGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~----~G~~eeAi~~~~kAL~i~er~ 1073 (1403)
+..++.+|..++.++++.+|+.+|++|.+. ..+.++..||.+|.. ..++..|..+++.+...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---- 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC----
T ss_conf 899999999999877999999999999978----------999999999999980999605699998750122211----
Q ss_pred CCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHH
Q ss_conf 199995699999999999998----799999999999999999750699998799999999999999----499999999
Q 000589 1074 LGLDHPDTAHSYGNMALFYHG----LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD----IGKMDTALR 1145 (1403)
Q Consensus 1074 lg~d~p~~a~a~~nLA~~~~~----~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~----~g~~eeAl~ 1145 (1403)
.++ .+..++|.++.. ..+...|+..++++... .. ......++..+.. ......|..
T Consensus 68 ---~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~---~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 68 ---NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ---TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ---CCC---CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------HH---HHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf ---111---123135012243211212367798887655432-------14---66887634332378733101577888
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997097968899999999999999----3997999999999999999971999989999999999999788
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~----~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~ 1221 (1403)
.+.+.... .....+..||.+|.. ..+...+..+++.+.+. .+ ..+..+|+.++..+
T Consensus 132 ~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-------g~---~~A~~~lg~~y~~g 191 (265)
T d1ouva_ 132 YFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHG 191 (265)
T ss_dssp HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHT
T ss_pred HHHHHHCC----------CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC-------CC---CCCCCCHHHHCCCC
T ss_conf 75552001----------110104455556406887433422000122113232-------22---23322113121267
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH---H-----HCCHHHHHHHHHHHHH
Q ss_conf 999993169999999989999999851967999999999---9-----2990999999999999
Q 000589 1222 LQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA---A-----AGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1222 ~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La---~-----~G~~~eA~~~~ekAL~ 1277 (1403)
. ...+++.+|+..+. ++.+. .++ .++.+|| . ..++.+|..+|++|.+
T Consensus 192 ~--~~~~d~~~A~~~~~--~aa~~--g~~---~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 192 E--GATKNFKEALARYS--KACEL--ENG---GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp C--SSCCCHHHHHHHHH--HHHHT--TCH---HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred C--CCCCCHHHHHHHHH--HHHCC--CCH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 6--54310344454676--65303--689---99999999998399976189999999999998
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.95 E-value=6.8e-08 Score=76.77 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998799999999999999999750699---99879999999999999949999999999999999999
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP---DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~---d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~ 1156 (1403)
.+|.++|.+|..+|+|++|+..+.+++.+....... .++....+++++|.+|..+|++++|+.+|++|+++...
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999828630015766435530431002455443112787752699999888888889999999986687
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=6.5e-08 Score=76.96 Aligned_cols=99 Identities=25% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999992299999999999999999994199995699999999999998799999999999999999750699
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1039 ~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~ 1118 (1403)
.+..+...|..|+..|+|++|+.+|++++.+ +|....+|.++|.++..+|++++|+..|++++.+
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------- 73 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 73 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-------
T ss_conf 9999999999999958999999986602110--------0011333245678887405421288889999987-------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99879999999999999949999999999999999
Q 000589 1119 DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1119 d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
.|....++.++|.++..+|++++|+.++++++.+
T Consensus 74 -~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 74 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf -5446687799999999949999999989999872
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.93 E-value=1.4e-07 Score=74.14 Aligned_cols=112 Identities=15% Similarity=0.005 Sum_probs=50.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf 999998799999999999999999750699----9987999999999999994999999999999999999970979---
Q 000589 1089 ALFYHGLNQTELALRHMSRALLLLSLSSGP----DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE--- 1161 (1403)
Q Consensus 1089 A~~~~~~g~~~eAl~~l~kAL~l~~~~~g~----d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~--- 1161 (1403)
|..++..|+|++|+..|++++.+....... ..+..+.++.++|.+|..+|++++|+..+++++.+..+.....
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999859999999999999986844201020012102799999999999982863001576643553043100245544
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 688999999999999993997999999999999999971
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
.+....+++++|.+|..+|++++|+.+|++++++..+..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 311278775269999988888888999999998668742
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2.2e-07 Score=72.57 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999229999999999999999999419999-------56999999999999987999999999999999997
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH-------PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1041 ~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~-------p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~ 1113 (1403)
..+...|..++..|+|++|+..|++|+.+.....+... .....+|.++|.+|..+|+|++|+.++++++.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-- 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC--
T ss_conf 999999999999699999999999998875101000357776406467999999999988642110110000000100--
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 5069999879999999999999949999999999999999
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
+|....+++++|.+|..+|++++|+.+|++++.+
T Consensus 92 ------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 92 ------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------2231034677799998722299999999999972
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.3e-07 Score=71.14 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999999879999999999999999975069999879999999999999949999999999999999999709796889
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1086 ~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
.++|..++..|+|++|+.+|.+++.+ +|....++.++|.+|..+|+|++|+..+++|+.+..... ..+...
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~ 78 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQI 78 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHH
T ss_conf 99999999859999999999999884--------964589998688999881860778999999998680127-889889
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999999999399799999999999
Q 000589 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1166 a~~~~~LA~iy~~~Gd~~eAi~~lkkAl 1193 (1403)
+.++..+|.++..++++++|+.++++++
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999999999388999999999998
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.7e-07 Score=73.62 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999909979999999999999998409999-------8899999999999992299999999999999999
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH-------REVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~-------p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~ 1070 (1403)
+..+.+.|..++..|+|++|+.+|.+|+.+........+ .....++.++|.+|+.+|++++|+.++++++.+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~- 91 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 91 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC-
T ss_conf 9999999999999699999999999998875101000357776406467999999999988642110110000000100-
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99419999569999999999999879999999999999999
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1071 er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l 1111 (1403)
+|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------2231034677799998722299999999999972
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=6.1e-09 Score=85.33 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999099799999999999999984099998899999999999992299999999999999999994199
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+.+.|..++..|+|++|+.+|.+|+.+ .|..+.++.++|.+|..+|++++|+.+|.+|+.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------- 67 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 4999999999999869999999999999985--------9998999981789874100000124788888871-------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99569999999999999879999999999999999975
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114 (1403)
Q Consensus 1077 d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~ 1114 (1403)
.|....+|.++|.+|..+|++++|+.+|++++.+...
T Consensus 68 -~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf -8873899999999999879999999999999874955
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.7e-07 Score=70.74 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999229999999999999999999419999569999999999999879999999999999999975069999
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~ 1120 (1403)
..+..+|..++..|+|++|+.+|.+++.+ +|....++.++|.+|..+|+|++|+..+.+++.+..... ..+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~ 75 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDY 75 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHH
T ss_conf 99999999999859999999999999884--------964589998688999881860778999999998680127-889
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 87999999999999994999999999999999
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1121 p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~ 1152 (1403)
...+.++.++|.++..++++++|+.+|++++.
T Consensus 76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88999999999999993889999999999984
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.8e-09 Score=89.66 Aligned_cols=169 Identities=9% Similarity=-0.004 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25899999999999990997999999999999999840999988999999999999922999999999999999999941
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~l 1074 (1403)
...+..+..+|..+...|++++|...+.+++.. ....++.+||.++..++++++|+.+|++|+.+
T Consensus 117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l----- 181 (497)
T d1ya0a1 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181 (497)
T ss_dssp --------------------------CCHHHHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----
T ss_conf 113999998579987589999999999988278----------89999999999999802478999999999987-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99995699999999999998799999999999999999750699998799999999999999499999999999999999
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~ 1154 (1403)
.|....+|++||.++...|++.+|+.+|.+|+.+. +....++.||+.++....+..++...
T Consensus 182 ---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~~a~~nL~~~~~~~~~~~~~~~~-------- 242 (497)
T d1ya0a1 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--------FPFPAASTNLQKALSKALESRDEVKT-------- 242 (497)
T ss_dssp ---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCHHHHHHHHHHHHHHTTSCCCCCS--------
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf ---89965999999999998699999999999998179--------99789999999999875301544123--------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99709796889999999999999939979999999999999999719
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG 1201 (1403)
.............+..++.....++......++.+..+...+.
T Consensus 243 ----~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 285 (497)
T d1ya0a1 243 ----KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF 285 (497)
T ss_dssp ----SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----4444258999999999997188666589999999999999985
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=2.8e-08 Score=79.87 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999922999999999999999999941999956999999999999987999999999999999997506999
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d 1119 (1403)
+..+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.+|.+|+.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 999999999999869999999999999985--------9998999981789874100000124788888871--------
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9879999999999999949999999999999999999
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~ 1156 (1403)
.|..+.++.++|.+|..+|++++|+.+|++|+.+...
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 8873899999999999879999999999999874955
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.80 E-value=3.3e-07 Score=71.21 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999987999999999999999997506999987999999999999994999999999999999
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1084 a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~ 1152 (1403)
+|.|+|.+|..+++|.+|+.++.+++.+ +|....+++++|.++..+|++++|+..|++++.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9984999987762201100022322201--------310488999889999882789999999999998
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.7e-07 Score=73.63 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999990997999999999999999840999988999999999999922999999999999999999941999
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d 1077 (1403)
+..+...|..++..|+|++|+.+|.+++.. .|..+.++.++|.+|..+|++++|+..+.+++.+
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------- 66 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 66 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--------
T ss_conf 999999999999969999999999998861--------9960134300011011000011210013467774--------
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9569999999999999879999999999999999
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l 1111 (1403)
.|....+|.++|.++..+|++++|+..|++++.+
T Consensus 67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0220267788999999812799999999999984
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.78 E-value=4.3e-07 Score=70.27 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999949999999999999999999709796889999999999999939979999999999999
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1123 ~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i 1195 (1403)
...++.|+|.+|..++++++|+.++++++.+. |....+++++|.+|..+|++++|+..+++++.+
T Consensus 63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 79999849999877622011000223222013--------104889998899998827899999999999985
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.77 E-value=3e-07 Score=71.50 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 69999999999999879999999999999999975069999879999999999999949999999999999999
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1080 ~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
..+.++.++|.++..+|+|++|+..+.+++.+ +|..+.+++++|.+|..+|++++|+..|++++++
T Consensus 75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 23999998999998640210136665544310--------0022367776999999804799999999999985
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.75 E-value=1.9e-07 Score=73.09 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999099799999999999999984099998899999999999992299999999999999999994199
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+...|..++..|+|.+|+..|.+|+.+............ .....
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~---------------------~~~~~----------- 63 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL---------------------LDKKK----------- 63 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH---------------------HHHHH-----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHHH-----------
T ss_conf 9999999999999959999999999987760730011105778---------------------87631-----------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99569999999999999879999999999999999975069999879999999999999949999999999999999
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1077 d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
+..+.++.|+|.+|+.+|++++|+.++.+++.+ +|....+++++|.++..+|++++|+.+|++++++
T Consensus 64 --~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 64 --NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC--------CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf --078899961999999846530111010001000--------0000124677689999968999999999999982
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.74 E-value=4e-07 Score=70.47 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 879999999999999949999999999999999999709796889999999999999939979999999999999
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1121 p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i 1195 (1403)
|..+.++.++|.++..+|++++|+..+.+|+++. |..+.+++++|.+|..+|++++|+..+++++++
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0239999989999986402101366655443100--------022367776999999804799999999999985
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=1.1e-05 Score=58.88 Aligned_cols=192 Identities=10% Similarity=-0.021 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 79999999999999998409999889999999999999229999999999999999999419999569999999999999
Q 000589 1014 LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYH 1093 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~ 1093 (1403)
.++|...|.+|+.. ..|.....+..++.++..+|++++|...|.+++... +. .....+..++.++.
T Consensus 80 ~~~a~~i~~ral~~-------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~--~~~~~w~~~~~~~~ 145 (308)
T d2onda1 80 SDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DI--DPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SS--CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----CC--CHHHHHHHHHHHHH
T ss_conf 59999999999987-------499879999999999986133899999999999871-----57--86999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 879999999999999999975069999879999999999999-9499999999999999999997097968899999999
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQ-DIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1094 ~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~-~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
..++++.|...|.+++.. .|.....+...|.... ..++.+.|...|++++... +.....+..+
T Consensus 146 ~~~~~~~ar~i~~~al~~--------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y 209 (308)
T d2onda1 146 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAY 209 (308)
T ss_dssp HHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_conf 827868899999999980--------888679999999999876557789999999999861--------0038899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999993997999999999999999971999989-999999999999788999993169999999989999999851
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR-TKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA 1248 (1403)
Q Consensus 1173 A~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~-~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~ 1248 (1403)
+..+...|+++.|...|++++... +.++. ..........+ +...|+...+..+++ ++.++++.
T Consensus 210 ~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~~~f------E~~~G~~~~~~~~~~--r~~~~~~~ 273 (308)
T d2onda1 210 IDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAF------ESNIGDLASILKVEK--RRFTAFRE 273 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHH------HHHHSCHHHHHHHHH--HHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHH--HHHHHCCC
T ss_conf 999998698689999999999827-----89868999999999999------998499999999999--99987711
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=1.9e-05 Score=56.80 Aligned_cols=195 Identities=11% Similarity=0.039 Sum_probs=101.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 22999999999999999999941999956999999999999987999999999999999997506999987999999999
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
..+....+.....++..++++......|.....+..++.++..+|+++.|...|.+++... +.+ ...++..++
T Consensus 69 ~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~~--~~~~w~~~~ 141 (308)
T d2onda1 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DID--PTLVYIQYM 141 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSC--THHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----CCC--HHHHHHHHH
T ss_conf 7778763102459999999999987499879999999999986133899999999999871-----578--699999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9999949999999999999999999709796889999999999999-939979999999999999999719999899999
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN-CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS 1210 (1403)
Q Consensus 1132 ~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~-~~Gd~~eAi~~lkkAl~i~~~~lG~~~~~~~~a 1210 (1403)
......++++.|...|++++... +.....+...|.... ..|+.+.|...++.++..+ ++++....
T Consensus 142 ~~~~~~~~~~~ar~i~~~al~~~--------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----p~~~~~w~- 207 (308)
T d2onda1 142 KFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVL- 207 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTCHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHHHHH-
T ss_conf 99998278688999999999808--------88679999999999876557789999999999861-----00388999-
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHH-HHCCHHHHHHHHHHHHH
Q ss_conf 99999999788999993169999999989999999851967----999999999-92990999999999999
Q 000589 1211 QNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPD----LIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1211 ~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~----~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
..+.+. ..+|++++|..+++ +++......|. ....+...- ..|+...+...++++.+
T Consensus 208 --~y~~~~------~~~g~~~~aR~~fe--~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 208 --AYIDYL------SHLNEDNNTRVLFE--RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp --HHHHHH------HTTCCHHHHHHHHH--HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHH------HHCCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf --999999------98698689999999--999827898689999999999999984999999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.69 E-value=2.7e-07 Score=71.96 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999992299999999999999999994199995699999999999998799999999999999999750699
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1039 ~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~ 1118 (1403)
.+..+...|..++..|+|.+|+..|.+|+.+.......+... .....+
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~---------------------~~~~~~----------- 63 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI---------------------LLDKKK----------- 63 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---------------------HHHHHH-----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH---------------------HHHHHH-----------
T ss_conf 999999999999995999999999998776073001110577---------------------887631-----------
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99879999999999999949999999999999999999709796889999999999999939979999999999999999
Q 000589 1119 DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1119 d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
+....++.|+|.+|..+|++++|+.++++|+++. |....+++++|.+|..+|++++|+.++++++.+
T Consensus 64 --~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--- 130 (153)
T d2fbna1 64 --NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--- 130 (153)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred --HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
T ss_conf --0788999619999998465301110100010000--------000124677689999968999999999999982---
Q ss_pred HHCCCCHHHHHHHHHHHHHH
Q ss_conf 71999989999999999999
Q 000589 1199 QLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1199 ~lG~~~~~~~~a~~~La~l~ 1218 (1403)
.|++.... ..+..+.
T Consensus 131 --~P~n~~~~---~~l~~~~ 145 (153)
T d2fbna1 131 --NPNNLDIR---NSYELCV 145 (153)
T ss_dssp --STTCHHHH---HHHHHHH
T ss_pred --CCCCHHHH---HHHHHHH
T ss_conf --98989999---9999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.7e-07 Score=71.84 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999922999999999999999999941999956999999999999987999999999999999997506999987
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 l~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~ 1122 (1403)
+...|..++..|++++|+..|++++.. .|....++.++|.+|..+|++++|+..+.+++.+. |.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~ 69 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------PD 69 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC--------CC
T ss_conf 999999999969999999999998861--------99601343000110110000112100134677740--------22
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999949999999999999999
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1123 ~a~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
...++.++|.++..+|++++|+.+|++++++
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0267788999999812799999999999984
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.49 E-value=8.5e-07 Score=67.82 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999990997999999999999999840999988999999999999922999999999999999999941999956
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
.+.+|..++..|++++|+..+++++.. .|....++..+|.++...+++++|+.++++++.+ +|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------CCC
T ss_conf 999999999876058999988610112--------1111001233545641012587741000001111--------110
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999998799999999999999
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1081 ~a~a~~nLA~~~~~~g~~~eAl~~l~kAL 1109 (1403)
...++.+||.+|..+|++++|++++++.+
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00003789999999789999999999981
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=1.4e-06 Score=66.13 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999922999999999999999999941999956999999999999987999999999999999997506999987
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 l~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~ 1122 (1403)
...+|..++..|++++|+..+++++.. .|....++.++|.++...+++++|+.++++++.+ +|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------CCC
T ss_conf 999999999876058999988610112--------1111001233545641012587741000001111--------110
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999499999999999999
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1123 ~a~~~~nLA~il~~~g~~eeAl~~lekAL 1151 (1403)
...++.++|.+|..+|++++|++++++.|
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00003789999999789999999999981
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.00011 Score=50.68 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999992299999999999999999994199995699999999999998----799999999999999999750
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG----LNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1040 a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~----~g~~~eAl~~l~kAL~l~~~~ 1115 (1403)
+.++..||..++..+++.+|+.+|++|.+. ....++.+||.+|.. ..++..|..+++.+...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---- 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC----
T ss_conf 899999999999877999999999999978----------999999999999980999605699998750122211----
Q ss_pred CCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----CCCHHHHHH
Q ss_conf 699998799999999999999----499999999999999999997097968899999999999999----399799999
Q 000589 1116 SGPDHPDVAATFINVAMMYQD----IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQ 1187 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~il~~----~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~----~Gd~~eAi~ 1187 (1403)
.++ ....++|.++.. ..+...|..+++++.... .......++..+.. ......|..
T Consensus 68 ---~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g----------~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 68 ---NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ---TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ---CCC---CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf ---111---1231350122432112123677988876554321----------466887634332378733101577888
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-------
Q ss_conf 9999999999971999989999999999999788999993169999999989999999851967999999999-------
Q 000589 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA------- 1260 (1403)
Q Consensus 1188 ~lkkAl~i~~~~lG~~~~~~~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La------- 1260 (1403)
.+.+... ... ..+...|+.++..+ .....+...+...+. .+.+ ..++ .+..+||
T Consensus 132 ~~~~~~~-------~~~---~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~--~a~~--~g~~---~A~~~lg~~y~~g~ 192 (265)
T d1ouva_ 132 YFTKACD-------LND---GDGCTILGSLYDAG--RGTPKDLKKALASYD--KACD--LKDS---PGCFNAGNMYHHGE 192 (265)
T ss_dssp HHHHHHH-------TTC---HHHHHHHHHHHHHT--SSSCCCHHHHHHHHH--HHHH--TTCH---HHHHHHHHHHHHTC
T ss_pred HHHHHHC-------CCC---CCHHHHHHHHHCCC--CCCCCCCCCCHHHHH--CCCC--CCCC---CCCCCHHHHCCCCC
T ss_conf 7555200-------111---01044555564068--874334220001221--1323--2222---33221131212676
Q ss_pred -HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHH
Q ss_conf -9299099999999999986529998344152999999999999999994377730----8991101399999999782
Q 000589 1261 -AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRP----HGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1261 -~~G~~~eA~~~~ekAL~~~~~G~~hp~~~~~~era~~a~~e~r~l~~a~G~~~~~----~g~~~eA~~~l~qaL~l~~ 1334 (1403)
...++.+|+.+|+++.+. | ++. .....|.++.. ..+..+|...|+++.+.-.
T Consensus 193 ~~~~d~~~A~~~~~~aa~~---g--~~~-----------------a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 193 GATKNFKEALARYSKACEL---E--NGG-----------------GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHT---T--CHH-----------------HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHCC---C--CHH-----------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 5431034445467665303---6--899-----------------9999999998399976189999999999998769
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.3e-06 Score=64.28 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999949999999999999999
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1125 ~~~~nLA~il~~~g~~eeAl~~lekAL~l 1153 (1403)
.++++||.+|..+|++++|+.+|++++++
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999973169999999999976
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2e-06 Score=64.80 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999879999999999999999975069999879999999999999949---9999999999999999997097968
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG---KMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1087 nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g---~~eeAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+++..+...+++++|++.|++++.+ .|....+++|+|.++...+ ++++|+..|++++... ..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~~ 69 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------CCC
T ss_conf 7988736999999999999998832--------99989999999999998512678999999999998606------993
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999999939979999999999999
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1164 ~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i 1195 (1403)
....++++||.+|..+|++++|+.++++++.+
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 19999999999999973169999999999976
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-05 Score=56.94 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999909979999999999999998409999889999999999999229999999999999999
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i 1069 (1403)
+...+++|..++.+|+|.+|+.+|++|+.+.... ....+..+.++.+||.++..+|++++|+.++++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999779999999999999988653-0147647899998726888657739888788779886
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.08 E-value=0.00014 Score=49.79 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999994999999999999999999970979688999999999999993997999999999999999971999
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i~~~~lG~~ 1203 (1403)
..++.+++.++...|++++|+.++++++.+. |....++..++.+|...|++.+|+..|+++...+.+.+|.+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~ 138 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH--------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 138 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999988799057899999999849--------85199999999999985579999999999999989984899
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=8.1e-06 Score=59.86 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0997999999999999999840999988999999999999922
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA 1053 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~ 1053 (1403)
.+.|++|+..|++++.+ +|..+.++.++|.++..+
T Consensus 10 ~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~ 44 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLEL 44 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHH
T ss_conf 73699999999999861--------883108999999999876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=5.4e-05 Score=53.14 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999229999999999999999999419999569999999999999879999999999999999
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1043 l~~LA~iy~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l 1111 (1403)
++.+|.+++.+|+|.+|+.++++|+.+..... ...+..+.++.+||.++..+|++++|+.++++++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999997799999999999999886530-147647899998726888657739888788779886
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=0.00019 Score=48.76 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25899999999999990997999999999999999840999988999999999999922999999999999999999941
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~qi~g~~~p~~a~al~~LA~iy~~~G~~eeAi~~~~kAL~i~er~l 1074 (1403)
......+...|......|++++|...|.+|+.++. |+.-.+. ..+.+- ......+
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r---G~~l~~~------------~~~~w~-----~~~r~~l----- 62 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWR---GPVLDDL------------RDFQFV-----EPFATAL----- 62 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---SSTTGGG------------TTSTTH-----HHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCCCCCC------------CCHHHH-----HHHHHHH-----
T ss_conf 99999999999999988799999999999986386---1311257------------631899-----9999999-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99995699999999999998799999999999999999750699998799999999999999499999999999999999
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~ 1154 (1403)
.+....++.+++.++...|++++|+.++++++.+ +|....++.+++.+|...|++.+|+..|+++.+..
T Consensus 63 ---~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 63 ---VEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf ---9999999999999998879905789999999984--------98519999999999998557999999999999998
Q ss_pred HHHHCCC
Q ss_conf 9970979
Q 000589 1155 ERLLGEE 1161 (1403)
Q Consensus 1155 ~~~~G~~ 1161 (1403)
..-+|-+
T Consensus 132 ~~eLG~~ 138 (179)
T d2ff4a2 132 ADDLGID 138 (179)
T ss_dssp HHHHSCC
T ss_pred HHHHCCC
T ss_conf 9984899
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.98 E-value=8.6e-06 Score=59.62 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 992299999999999999999994199995699999999999998799----------9999999999999997506999
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQ----------TELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1050 y~~~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~----------~~eAl~~l~kAL~l~~~~~g~d 1119 (1403)
|..++.|++|+..|++|+.+ .|..+.++.++|.++...++ +++|+.+|++|+.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------- 70 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------- 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 99873699999999999861--------88310899999999987621333367788788899999998873--------
Q ss_pred CHHHHHHHHHHHHHHHHCC
Q ss_conf 9879999999999999949
Q 000589 1120 HPDVAATFINVAMMYQDIG 1138 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~il~~~g 1138 (1403)
+|....+++++|.+|..+|
T Consensus 71 ~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 71 DPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCC
T ss_conf 0120587766899998701
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.90 E-value=2.2e-05 Score=56.31 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=23.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 949999999999999999999709796889999999999999939979999999999999
Q 000589 1136 DIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1136 ~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..|++++|+..|+++++.. |.....+..|+.+|...|++++|+..+++++++
T Consensus 8 ~~G~l~eAl~~l~~al~~~--------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS--------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8889999999999999978--------999999999999999879999999999999986
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.74 E-value=7.7e-05 Score=51.88 Aligned_cols=74 Identities=16% Similarity=0.018 Sum_probs=36.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99879999999999999999975069999879999999999999949999999999999999999709796889999999
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~il~~~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
.+..|++++|+..+++++.. +|.....+.+++.+|...|++++|+..|++++++. |.....+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~~ 69 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGASQ 69 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHH
T ss_conf 98888999999999999997--------89999999999999998799999999999999869--------973899999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999999399
Q 000589 1172 LAIAFNCMGA 1181 (1403)
Q Consensus 1172 LA~iy~~~Gd 1181 (1403)
++.++...+.
T Consensus 70 l~~ll~a~~~ 79 (264)
T d1zbpa1 70 LRHLVKAAQA 79 (264)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHCCC
T ss_conf 9999983466
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.96 E-value=0.0061 Score=36.36 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 299999999999999999994199995699999999999998----7999999999999999997506999987999999
Q 000589 1053 AGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG----LNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128 (1403)
Q Consensus 1053 ~G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~----~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~ 1128 (1403)
..++++|+.+++++... ++ ..++.+||.+|.. ..++.+|+.+|+++... .+ ..+..
T Consensus 36 ~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~ 95 (133)
T d1klxa_ 36 QINKQKLFQYLSKACEL-------NS---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCL 95 (133)
T ss_dssp TSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred CCCHHHHHHHHHHHHCC-------CC---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-------CC---CHHHH
T ss_conf 23899999987654113-------31---2555567875330135310357888887500025-------74---06778
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHH
Q ss_conf 99999999----4999999999999999
Q 000589 1129 NVAMMYQD----IGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1129 nLA~il~~----~g~~eeAl~~lekAL~ 1152 (1403)
+||.+|.. ..++.+|+.+|++|.+
T Consensus 96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 96 ILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999998298467789999999999998
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.92 E-value=0.007 Score=35.92 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999994199995699999999999998799999999999999999750699998799999999999
Q 000589 1054 GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMM 1133 (1403)
Q Consensus 1054 G~~eeAi~~~~kAL~i~er~lg~d~p~~a~a~~nLA~~~~~~g~~~eAl~~l~kAL~l~~~~~g~d~p~~a~~~~nLA~i 1133 (1403)
.++++|+.+|+++... + ++ .++.+|+. ....++++|+.+++++.+. .+ ..++++||.+
T Consensus 7 kd~~~A~~~~~kaa~~-----g--~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~ 64 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-----N--EM---FGCLSLVS--NSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CT---THHHHHHT--CTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-----C--CH---HHHHHHCC--CCCCCHHHHHHHHHHHHCC-------CC---HHHHHHHHHH
T ss_conf 6999999999999987-----9--91---54565410--1123899999987654113-------31---2555567875
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf 999----499999999999999999997097968899999999999999----39979999999999999
Q 000589 1134 YQD----IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1134 l~~----~g~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~----~Gd~~eAi~~lkkAl~i 1195 (1403)
|.. ..++.+|+.+|+++.+. ....+...||.+|.. ..++.+|+.++++|.+.
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCC----------CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 330135310357888887500025----------740677899999982984677899999999999987
|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like N-terminal domain of PLIC-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.017 Score=32.80 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=63.9
Q ss_pred CCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 86540008996799860588528878099999995506963012016865077789853246622211223667876189
Q 000589 79 GELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTL 158 (1403)
Q Consensus 79 ~~~~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l 158 (1403)
.....+.|+|+.+++ +.++.+.+.++|.++++.|....... -.+..|.+.| +.|+|...|+++ ||++ |++|
T Consensus 28 ~~~~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~-~~~qrLi~~G-----k~L~D~~tL~~~-~I~~-g~~I 98 (103)
T d1j8ca_ 28 AEPKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQ-TDQLVLIFAG-----KILKDQDTLIQH-GIHD-GLTV 98 (103)
T ss_dssp CCCCCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSC-SSSEEEEETT-----EEESTTSCGGGT-TCSS-SEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEECCCCHHHHHHHHHHHHHCCC-HHHEEEEEEE-----ECCCCCCCHHHC-CCCC-CCEE
T ss_conf 998769999989995-38999899892999999999998919-7791013330-----025688808993-9999-9999
Q ss_pred EEEEC
Q ss_conf 99954
Q 000589 159 EMVAA 163 (1403)
Q Consensus 159 ~~v~~ 163 (1403)
.||..
T Consensus 99 ~lvlr 103 (103)
T d1j8ca_ 99 HLVIK 103 (103)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99979
|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Rub1 species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.56 E-value=0.028 Score=30.98 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=62.4
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 0089967998605885288780999999955069630120168650777898532466222112236678761899995
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|+|+++.|..+++.+.++++|.++++.+.+... ..-....|.+.| +.|+|...|+++ +|++ +++|.|+.
T Consensus 1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~g-i~~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~sti~lvl 71 (73)
T d1bt0a_ 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEG-IPPVQQRLIYAG-----KQLADDKTAKDY-NIEG-GSVLHLVL 71 (73)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEETT-----EECCTTSBTGGG-TCCT-TCEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEEE
T ss_conf 98999938999999998897819999998887859-996999989898-----081899958994-9999-99999996
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.071 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999229999999999999999
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1041 ~al~~LA~iy~~~G~~eeAi~~~~kAL~i 1069 (1403)
.++++||..|+.+|+|++|..++++++.+
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999873299999999999823
|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Interferon-induced 15 kDa protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.037 Score=30.01 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00899679986058852887809999999550696301201686507--7789853246622211223667876189999
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH--TKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~--~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
|+|+|++.+|..+++.+.++++|.+|++.+..... ..-..-.|.++ | ..|.|...|++. ||++ |++|.||
T Consensus 1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~g-ip~~~QrLi~~~~G-----k~L~D~~tL~~y-~i~~-g~~i~lv 72 (76)
T d1z2ma1 1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG-VHAFQQRLAVHPSG-----VALQDRVPLASQ-GLGP-GSTVLLV 72 (76)
T ss_dssp CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHC-CCGGGEEEEEETTC-----CBCCSSSCSGGG-TCCT-TCEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCC-----EECCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 97999958999999998997949999999998745-68765899991787-----464698828996-9898-9999999
Q ss_pred EC
Q ss_conf 54
Q 000589 162 AA 163 (1403)
Q Consensus 162 ~~ 163 (1403)
-.
T Consensus 73 ~~ 74 (76)
T d1z2ma1 73 VD 74 (76)
T ss_dssp EC
T ss_pred EE
T ss_conf 97
|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Dendritic cell-derived ubiquitin-like protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.032 Score=30.53 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.++|+|++..+..+.+.+.+.++|.++++.+..... ..-....|.++| ..|+|...|+++ +|++ +++|.|+
T Consensus 2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~-ip~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~sti~lv 73 (80)
T d1ttna1 2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG-VEPGSQRWFFSG-----RPLTDKMKFEEL-KIPK-DYVVQVI 73 (80)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC-CCSTTCEEEETT-----EECCTTSHHHHC-CCSS-SCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 7089999908998999997794809999998898869-880327889876-----286899968990-9999-9999999
Q ss_pred E
Q ss_conf 5
Q 000589 162 A 162 (1403)
Q Consensus 162 ~ 162 (1403)
-
T Consensus 74 i 74 (80)
T d1ttna1 74 V 74 (80)
T ss_dssp C
T ss_pred E
T ss_conf 6
|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of parkin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.89 E-value=0.069 Score=27.81 Aligned_cols=74 Identities=9% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 00089967998605885288780999999955069630120168650777898532466222112236678761899995
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
.+.|.|+++.+..+.+.+.++++|.++++.+.+... ..-....|.|.| +.|+|...|++. +|+. +++|.|+.
T Consensus 2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~g-ip~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~sti~lv~ 73 (78)
T d2zeqa1 2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQG-VPADQLRVIFAG-----KELPNHLTVQNC-DLEQ-QSIVHIVQ 73 (78)
T ss_dssp CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHT-CCGGGEEEEETT-----EEECTTCBGGGS-SCCT-TCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEEEE-----EECCCCCCHHHC-CCCC-CCEEEEEE
T ss_conf 659999939998899998166509999999998778-491583787741-----286898888994-9999-99999996
Q ss_pred CC
Q ss_conf 47
Q 000589 163 AL 164 (1403)
Q Consensus 163 ~~ 164 (1403)
.|
T Consensus 74 R~ 75 (78)
T d2zeqa1 74 RP 75 (78)
T ss_dssp SS
T ss_pred CC
T ss_conf 36
|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquilin-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.061 Score=28.20 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 86540008996799860588528878099999995506963012016865077789853246622211223667876189
Q 000589 79 GELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTL 158 (1403)
Q Consensus 79 ~~~~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l 158 (1403)
+....++|+|+++++ ++++.+.++++|.+++..+...... .-.-..|.|.| ..|+|...|+++ ||++ |++|
T Consensus 3 ~~~~~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi-~~~~qrL~~~G-----k~L~D~~tL~~y-~i~~-gsti 73 (84)
T d1yqba1 3 GSPHLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKA-HPDQLVLIFAG-----KILKDPDSLAQC-GVRD-GLTV 73 (84)
T ss_dssp CCTTEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC-CGGGEEEEETT-----EECCTTSBHHHH-TCCT-TCEE
T ss_pred CCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHHHHHHHCC-CCHHEEEEEEE-----EECCCCCCHHHC-CCCC-CCEE
T ss_conf 899789999994997-5999989989099999998998795-90447888750-----002325757893-9999-9999
Q ss_pred EEEECC
Q ss_conf 999547
Q 000589 159 EMVAAL 164 (1403)
Q Consensus 159 ~~v~~~ 164 (1403)
.||..+
T Consensus 74 ~lv~r~ 79 (84)
T d1yqba1 74 HLVIKR 79 (84)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 999878
|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Interferon-induced 15 kDa protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.085 Score=27.05 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=63.2
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..++|.|+.+.+..+++.+.+.++|.++++.+....... -.-..|.++| ..|+|...|+++ ||+. ++++.|+
T Consensus 2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~qrL~~~g-----k~L~d~~tL~~y-~I~~-~sti~l~ 73 (76)
T d1z2ma2 2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ-DDLFWLTFEG-----KPLEDQLPLGEY-GLKP-LSTVFMN 73 (76)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEETT-----EECCTTSBGGGG-TCCT-TCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-HHHEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 978999996999999999789784999999998775679-4373788777-----088999938993-9999-9999999
Q ss_pred EC
Q ss_conf 54
Q 000589 162 AA 163 (1403)
Q Consensus 162 ~~ 163 (1403)
..
T Consensus 74 lR 75 (76)
T d1z2ma2 74 LR 75 (76)
T ss_dssp EC
T ss_pred EE
T ss_conf 72
|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: 2'-5'-oligoadenylate synthetase-like protein, OASL species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.055 Score=28.59 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..++|.|+++.+..+.+.+.+.++|.++++.+..... ..-....|.|.| +.|+|...|+++ +|.. +++|.|+
T Consensus 6 ~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-ip~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~stl~l~ 77 (87)
T d1wh3a_ 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG-LPKKQQQLEFQG-----QVLQDWLGLGIY-GIQD-SDTLILS 77 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC-CCTTTEEEEETT-----EECCSSSBHHHH-TCCT-TEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEEEC-----EECCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 8489999989999999997895709999999998889-296793888602-----286899908995-9999-9999998
Q ss_pred ECC
Q ss_conf 547
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
...
T Consensus 78 ~r~ 80 (87)
T d1wh3a_ 78 KKK 80 (87)
T ss_dssp ECS
T ss_pred ECC
T ss_conf 459
|
| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.098 Score=26.56 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=59.4
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCC--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00899679986058852887809999999550696--3012016865077789853246622211223667876189999
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE--TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~--t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|++..+..+++.+.++++|.++++.|..... ...-....|.+.| +.|+|...|+++ ||++ +++|.|+
T Consensus 1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~s~i~lv 73 (95)
T d1uela_ 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG-----KILNDDTALKEY-KIDE-KNFVVVM 73 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT-----EECCTTSBGGGG-TCCS-SSEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 98999948999999998997658999999986642158880124888788-----283599849994-9999-9999999
Q ss_pred E
Q ss_conf 5
Q 000589 162 A 162 (1403)
Q Consensus 162 ~ 162 (1403)
-
T Consensus 74 ~ 74 (95)
T d1uela_ 74 V 74 (95)
T ss_dssp E
T ss_pred E
T ss_conf 7
|
| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like protein bab25500 (2010008E23Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.32 E-value=0.088 Score=26.93 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 4000899679986058852887809999999550696301201686507778985324-662221122366787618999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHL-EDYNEISEVADITTGGCTLEM 160 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l-~~~~e~~~~~~~~~~~~~l~~ 160 (1403)
..+.|+||...+..+.+.+.++++|.+|++.+...+..+ ..|.|.| +.| +|...|.++ +|++ +++|.|
T Consensus 6 s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~~~~~~----qrLi~~G-----k~L~dd~~tL~~y-~i~~-g~~v~l 74 (95)
T d1wiaa_ 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQ----MKLIYQG-----RLLQDPARTLSSL-NITN-NCVIHC 74 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTTT----CEEEETT-----EECCCSSCBTTTT-TCCT-TEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCE----EEEEECC-----EECCCCCCCHHHC-CCCC-CCEEEE
T ss_conf 858999992899899999899581999999986379300----6999999-----9843678898996-9998-989999
Q ss_pred EE
Q ss_conf 95
Q 000589 161 VA 162 (1403)
Q Consensus 161 v~ 162 (1403)
+-
T Consensus 75 ~~ 76 (95)
T d1wiaa_ 75 HR 76 (95)
T ss_dssp EC
T ss_pred EE
T ss_conf 97
|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.12 Score=25.84 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=62.9
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 00899679986058852887809999999550696301201686507778985324662221122366787618999954
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|.|+++++..+++.+.+.++|.++++.+..... +.-....|.++| +.|+|...|+++ ++++ ++++.|+..
T Consensus 1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~qrL~~~G-----k~L~d~~tL~~y-~i~~-~s~I~L~~r 72 (76)
T d1ogwa_ 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIFAG-----KQLEDGRTLSDY-NIQK-ESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC-CCGGGEEEEETT-----EECCTTSBGGGG-TCCT-TCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCHHHEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEEEE
T ss_conf 98999959999999997897839999975303249-895887737788-----674799988995-9999-999999976
Q ss_pred C
Q ss_conf 7
Q 000589 164 L 164 (1403)
Q Consensus 164 ~ 164 (1403)
.
T Consensus 73 l 73 (76)
T d1ogwa_ 73 L 73 (76)
T ss_dssp T
T ss_pred C
T ss_conf 6
|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.091 Score=26.80 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCC--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 000899679986058852887809999999550696--301201686507778985324662221122366787618999
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE--TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEM 160 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~--t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~ 160 (1403)
.++|+|++..+..+++.+.++++|.++++.|..... ...-....|.++| +.|+|...|+++ ||++ +.++.+
T Consensus 2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~G-----k~L~D~~tL~~y-~I~~-~s~i~~ 74 (77)
T d1oqya4 2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG-----KILSDDVPIRDY-RIDE-KNFVVV 74 (77)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSS-----SEECSSSBTTTT-CCCT-TSCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHEEEEECC-----CCCCCCCCHHHC-CCCC-CCEEEE
T ss_conf 189999979999999998997829999999998608777896897868788-----293699938994-9999-999999
Q ss_pred E
Q ss_conf 9
Q 000589 161 V 161 (1403)
Q Consensus 161 v 161 (1403)
+
T Consensus 75 ~ 75 (77)
T d1oqya4 75 M 75 (77)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like protein 5, ubl5 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.92 E-value=0.12 Score=25.80 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
...+|.|+...|.++.+++.+.++|.|+++.+....... .....|.+.| +.|.|...|+++. |++ |++|.|.
T Consensus 27 ~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip-~~~qrLi~~G-----k~L~D~~tL~dyg-I~~-GstI~L~ 98 (100)
T d1uh6a_ 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR-WNKIVLKKWY-----TIFKDHVSLGDYE-IHD-GMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC-GGGCEEEETT-----EECCSSCBHHHHT-CCT-TEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-CCEEEEEEEE-----ECCCCCCCHHHCC-CCC-CCEEEEE
T ss_conf 459999988999999999888572999999999987987-4249999981-----0036768889969-999-9999998
|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like protein 3300001g02rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.074 Score=27.53 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCC---CCEE-----------EEEEEEEECCCCCCCCCCCC-CCCCC
Q ss_conf 400089967998605885288780999999955069---6301-----------20168650777898532466-22211
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAP---ETCF-----------FTCYDLVLHTKDGSTHHLED-YNEIS 146 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~---~t~~-----------~t~~~l~~~~~~~~~~~l~~-~~e~~ 146 (1403)
..+.|+|+.+++..+.+.|.+.++|.||++.+.... .-+. -..|.|.|.| +.|.| ...|.
T Consensus 6 s~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G-----~~L~d~~~tL~ 80 (105)
T d1v2ya_ 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG-----EKLTEDRKKLR 80 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSS-----CEECCSSSBHH
T ss_pred CCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEECC-----EECCCCCCCHH
T ss_conf 8589999907899999997998929999999999879697881543234543355641799899-----99745677788
Q ss_pred CCCCCCCCCCEEEEEECC
Q ss_conf 223667876189999547
Q 000589 147 EVADITTGGCTLEMVAAL 164 (1403)
Q Consensus 147 ~~~~~~~~~~~l~~v~~~ 164 (1403)
++ ||.+ +++|.||..+
T Consensus 81 ~~-gI~~-g~~l~lv~r~ 96 (105)
T d1v2ya_ 81 DY-GIRN-RDEVSFIKKL 96 (105)
T ss_dssp HH-TCCS-SEEEEEEECS
T ss_pred HC-CCCC-CCEEEEEEEC
T ss_conf 95-9899-9999999855
|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like modifier protein hub1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.077 Score=27.38 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..|+|+...|..+++.+.++++|.++++.+....... -....|.++| +.|+|...|++. ||++ |++|.|.
T Consensus 2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~-~~~q~Li~~G-----k~L~d~~tL~~y-~I~~-gstl~L~ 71 (73)
T d1m94a_ 2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQ-PNKIVLQKGG-----SVLKDHISLEDY-EVHD-QTNLELY 71 (73)
T ss_dssp EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCT-TTSEEEESSS-----CEECTTSBHHHH-TCCT-TEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCEEEEEEEE-----EEECCCCCHHHC-CCCC-CCEEEEE
T ss_conf 3999998999999999888480999999997755053-5489999976-----884136767772-9999-9999999
|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: DSK2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.1 Score=26.42 Aligned_cols=70 Identities=17% Similarity=0.321 Sum_probs=59.9
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 0089967998605885288780999999955069630120168650777898532466222112236678761899995
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|+|+.++ +++++.+.+.++|.++++.+..... ..-....|.|.| ..|+|...|+++ ||++ |++|.||.
T Consensus 2 i~I~Vk~~~-~~~~i~v~~~~tV~~lK~~I~~~~g-ip~~~qrLi~~G-----k~L~D~~tL~~~-~I~~-g~~i~lV~ 71 (73)
T d2bwfa1 2 LNIHIKSGQ-DKWEVNVAPESTVLQFKEAINKANG-IPVANQRLIYSG-----KILKDDQTVESY-HIQD-GHSVHLVK 71 (73)
T ss_dssp EEEEEEETT-EEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEETT-----EECCTTSBTGGG-TCCT-TCEEEEEE
T ss_pred EEEEEEECC-EEEEEEECCCCHHHHHHHHHHHHHC-CCHHHEEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEEE
T ss_conf 799999099-5899998998929999999999889-295791988898-----594598918997-9999-99999996
|
| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.21 Score=23.78 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=62.5
Q ss_pred CCCCEEEECCCC--CEEEEECCCCCHHHHHHHHHHHCCC-CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 400089967998--6058852887809999999550696-3012016865077789853246622211223667876189
Q 000589 82 HLYPVTVKTQSN--EKLELQLNPGDSVMDIRQFLLDAPE-TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTL 158 (1403)
Q Consensus 82 ~~~~v~v~~p~~--~~~~l~~~~~~~v~di~~~l~~~~~-t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l 158 (1403)
..+.|+|+.|+. ..+++.+.++++|.+|++.|..... -+.--...|.|.| +.|.|...|+++..-.+++.+|
T Consensus 6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~G-----k~L~D~~~L~d~~~~~~~~~vi 80 (93)
T d1wgda_ 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSG-----KLLLDHQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETT-----EECCSSSCHHHHSCSSSCSEEE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHEEEEECC-----EECCCCCCHHHHCCCCCCCCEE
T ss_conf 83799998789983069998189890999999999881789995787999799-----6956989999958655899899
Q ss_pred EEEECC
Q ss_conf 999547
Q 000589 159 EMVAAL 164 (1403)
Q Consensus 159 ~~v~~~ 164 (1403)
.||..+
T Consensus 81 HLV~~~ 86 (93)
T d1wgda_ 81 HLVCNV 86 (93)
T ss_dssp EEECCC
T ss_pred EEEECC
T ss_conf 999467
|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: 4931431F19Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.45 E-value=0.085 Score=27.07 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..++|+|++|++ +.++.+.++++|.++++.+....... -....|.+.| ..|.|...|+++ ||++ |+++.||
T Consensus 9 ~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~-~~~qrL~f~G-----k~L~d~~tL~~~-gI~~-gs~I~lv 79 (83)
T d1wx8a1 9 RIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCN-ADRLVLIFTG-----KILRDQDILSQR-GILD-GSTVHVV 79 (83)
T ss_dssp CEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSC-TTTBCCEETT-----EECCTTSCHHHH-TCCT-TEEEECC
T ss_pred CEEEEEEECCCC-CEEEEECCCCHHHHHHHHHHHHHCCC-HHHEEEEEEH-----HCCCCCCCHHHC-CCCC-CCEEEEE
T ss_conf 848999992998-59999999892999999988886989-5679999881-----005667847894-9999-9999999
Q ss_pred EC
Q ss_conf 54
Q 000589 162 AA 163 (1403)
Q Consensus 162 ~~ 163 (1403)
..
T Consensus 80 ~r 81 (83)
T d1wx8a1 80 VR 81 (83)
T ss_dssp BC
T ss_pred EE
T ss_conf 95
|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like PHD and RING finger domain-containing protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.24 Score=23.33 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCEEEECCCC-CEEEE-ECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 0089967998-60588-528878099999995506963012016865077789853246622211223667876189999
Q 000589 84 YPVTVKTQSN-EKLEL-QLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~-~~~~l-~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|++.+| ..+++ .+.+.++|.++++.+.+... .......|.|.| ..|+|...|++. +|+. +++|.||
T Consensus 1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~g-ip~~~qrLi~~G-----k~L~d~~tL~~y-~I~~-~s~i~lv 72 (76)
T d1wy8a1 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD-VRPECQRLFYRG-----KQLENGYTLFDY-DVGL-NDIIQLL 72 (76)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC-CCTTTEEEEETT-----EECCSSSBHHHH-TCCT-TCEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCHHCEEEEEE-----EEECCCCCHHHC-CCCC-CCEEEEE
T ss_conf 9899996899826998136998969999999999879-790141899874-----670699889993-9999-9999999
Q ss_pred ECC
Q ss_conf 547
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
..|
T Consensus 73 ~rp 75 (76)
T d1wy8a1 73 VRP 75 (76)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 725
|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: 1700011n24rik protein species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.74 E-value=0.3 Score=22.63 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCEEE----ECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 4000899----679986058852887809999999550696301201686507778985324-66222112236678761
Q 000589 82 HLYPVTV----KTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHL-EDYNEISEVADITTGGC 156 (1403)
Q Consensus 82 ~~~~v~v----~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l-~~~~e~~~~~~~~~~~~ 156 (1403)
..+.||| +.-.+..+.|++.+.++|.|+++.+..... ..-....|.|+| ..| ||...|.++ ||++ ++
T Consensus 6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~g-ip~~~Q~Li~~G-----k~L~dd~~tL~~~-gI~~-g~ 77 (102)
T d1v5oa_ 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG-VPAEEAQIVYME-----QLLTDDHCSLGSY-GLKD-GD 77 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC-CCGGGBCEEETT-----EEECCSSSBHHHH-TCCT-TE
T ss_pred CCEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC-CCCCEEEEEECC-----EEEECCCCCHHHC-CCCC-CC
T ss_conf 87799999635689998899998993639999999999868-885318998688-----5820135778884-9999-99
Q ss_pred EEEEEEC
Q ss_conf 8999954
Q 000589 157 TLEMVAA 163 (1403)
Q Consensus 157 ~l~~v~~ 163 (1403)
.|.|+..
T Consensus 78 ~i~l~~r 84 (102)
T d1v5oa_ 78 MVVLLQK 84 (102)
T ss_dssp EEEECBC
T ss_pred EEEEEEC
T ss_conf 9999987
|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.92 E-value=0.17 Score=24.50 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=59.1
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 40008996799860588528878099999995506963012016865077789853246622211223667876189999
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..|+|+||..++..+.+.+.++++|.++++.|..... ..-.+-.|.+.| +.|+|- .|+++ ||++ |++|.|+
T Consensus 6 ~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~g-vp~~~QkLi~~G-----k~L~d~-tL~~~-gi~~-g~~i~lv 76 (96)
T d1wgga_ 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTG-VQPARQKVMVKG-----GTLKDD-DWGNI-KMKN-GMTVLMM 76 (96)
T ss_dssp CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTC-CCTTTSCCEETT-----EECCSS-CCCSC-CCCS-SCEEECC
T ss_pred CCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCEEEEEEECC-----CCCCCC-CHHHC-CCCC-CCEEEEE
T ss_conf 8448999949997899998999959999987666507-530226776347-----036888-27887-9999-9999998
Q ss_pred E
Q ss_conf 5
Q 000589 162 A 162 (1403)
Q Consensus 162 ~ 162 (1403)
-
T Consensus 77 ~ 77 (96)
T d1wgga_ 77 G 77 (96)
T ss_dssp C
T ss_pred E
T ss_conf 5
|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Ubiquitin-like protein 3, Ubl3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.52 E-value=0.41 Score=21.47 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=59.5
Q ss_pred CCCCEEEECCCCCEEEEECCCCCHHHHHHHHHH-HCC------CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 400089967998605885288780999999955-069------6301201686507778985324662221122366787
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLL-DAP------ETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTG 154 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~-~~~------~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~ 154 (1403)
..+.|.|++..+..+++.+.++++|.+|++.+. ++| ....-...-|.|.| +.|+|...|.++ +|..
T Consensus 15 ~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~G-----k~L~D~~tL~~~-~i~~- 87 (116)
T d1wgha_ 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG-----RFLHGNVTLGAL-KLPF- 87 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT-----EEECSSCBTTTT-TCCS-
T ss_pred CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEECC-----EEECCCCCHHHC-CCCC-
T ss_conf 737999997189889999777602999999997654543211469996895999798-----783498899990-9999-
Q ss_pred C--CEEEEEECC
Q ss_conf 6--189999547
Q 000589 155 G--CTLEMVAAL 164 (1403)
Q Consensus 155 ~--~~l~~v~~~ 164 (1403)
| .+|.||..+
T Consensus 88 g~~~~lhlv~r~ 99 (116)
T d1wgha_ 88 GKTTVMHLVARE 99 (116)
T ss_dssp SCEEEEEEEECS
T ss_pred CCEEEEEEEECC
T ss_conf 997899999679
|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Large proline-rich protein BAT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.19 Score=24.15 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 00899679986058852887809999999550696301201686507778985324662221122366787618999954
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|++.++..+++.+.++++|.++++.+..... ..-....|.+.| +.|+|...|+++. + . ++++.||..
T Consensus 1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~g-ip~~~qrLi~~G-----k~L~d~~tL~dy~-i-~-~~ti~lv~r 71 (73)
T d1wx9a1 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS-IPSEKQRLIYQG-----RVLQDDKKLQEYN-V-G-GKVIHLVER 71 (73)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHC-CCTTTCCCEETT-----EECCSSSBHHHHT-C-T-TEEEBCCCS
T ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHC-CCHHHEEEEECC-----EECCCCCCHHHHC-C-C-CCEEEEEEC
T ss_conf 99999969999999998997839999999987749-994787998898-----5946989999959-8-9-989999945
|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: Splicing factor 3 subunit 1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.5 Score=20.78 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=53.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 86058852887809999999550696301201686507778985324662221122366787618999954
Q 000589 93 NEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 93 ~~~~~l~~~~~~~v~di~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
|..+.+.+.+.++|.++++.+...... ..-...|.+.| +.|.|...|+++ ||++ +++|.|+..
T Consensus 21 G~~~~l~v~~~~tV~~lK~~I~~~~~i-p~~~q~Li~~G-----k~L~D~~tL~dY-~I~~-gsti~l~~r 83 (86)
T d1zkha1 21 GQVLVFTLPLTDQVSVIKVKIHEATGM-PAGKQKLQYEG-----IFIKDSNSLAYY-NMAN-GAVIHLALK 83 (86)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHTCC-CTTTEEEEETT-----EEECTTSBHHHH-TCCT-TEEEEEEES
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCC-CHHHEEEEECC-----CCCCCCCCHHHC-CCCC-CCEEEEEEE
T ss_conf 749999989989699999999866569-96897988588-----186899888990-9999-999999985
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.97 E-value=0.51 Score=20.71 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999949---999999999999999999709796889999999999999939979999999999999
Q 000589 1124 AATFINVAMMYQDIG---KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1124 a~~~~nLA~il~~~g---~~eeAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~iy~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..+.++.|+++..-. +.++++.+|+++++. +......+++.||..|..+|+|++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 101999999998279688999999999999854-------95059999999999999873299999999999823
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