Citrus Sinensis ID: 000610
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1392 | ||||||
| 255558854 | 1329 | hypothetical protein RCOM_0731250 [Ricin | 0.889 | 0.931 | 0.498 | 0.0 | |
| 224054576 | 1327 | predicted protein [Populus trichocarpa] | 0.888 | 0.932 | 0.472 | 0.0 | |
| 449455164 | 1434 | PREDICTED: uncharacterized protein LOC10 | 0.905 | 0.879 | 0.421 | 0.0 | |
| 297745966 | 1669 | unnamed protein product [Vitis vinifera] | 0.738 | 0.615 | 0.412 | 0.0 | |
| 147780120 | 1131 | hypothetical protein VITISV_000937 [Viti | 0.665 | 0.819 | 0.387 | 1e-145 | |
| 449470991 | 1177 | PREDICTED: uncharacterized protein LOC10 | 0.719 | 0.850 | 0.370 | 1e-126 | |
| 449525108 | 538 | PREDICTED: uncharacterized protein LOC10 | 0.328 | 0.849 | 0.452 | 1e-101 | |
| 449529790 | 891 | PREDICTED: uncharacterized LOC101207800, | 0.155 | 0.242 | 0.721 | 4e-90 | |
| 356529863 | 858 | PREDICTED: uncharacterized protein LOC10 | 0.153 | 0.248 | 0.736 | 2e-88 | |
| 449474556 | 271 | PREDICTED: uncharacterized protein LOC10 | 0.155 | 0.797 | 0.721 | 3e-87 |
| >gi|255558854|ref|XP_002520450.1| hypothetical protein RCOM_0731250 [Ricinus communis] gi|223540292|gb|EEF41863.1| hypothetical protein RCOM_0731250 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1483 (49%), Positives = 882/1483 (59%), Gaps = 245/1483 (16%)
Query: 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDG 60
MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCL+Y+V+TT+ACPYDG
Sbjct: 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLSYVVSTTRACPYDG 60
Query: 61 YLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVV 120
YLVTEADSKPL ESNKALAETIGKITV+CL+HRSGCTWQGPLSECTSHCS CAFGNSPVV
Sbjct: 61 YLVTEADSKPLSESNKALAETIGKITVYCLYHRSGCTWQGPLSECTSHCSECAFGNSPVV 120
Query: 121 CNRCAIQIVHRQVQEHAQNCPGVQPQASQPEGVHDAAAIGTAATGDQSQVATQAGLTASQ 180
CNRC +QIVHRQVQEHAQNCPGVQPQA EG DAA GT A GDQ+Q ATQA T++
Sbjct: 121 CNRCGVQIVHRQVQEHAQNCPGVQPQA-HAEGAKDAAVTGTPAAGDQNQAATQAATTSAT 179
Query: 181 VQTQTIATPPPGKDTNQQPSSMSQPLAVVQAAVPTAEQWYQQQQQYQQYYQQYPGYNPYQ 240
QT +TP G + P++ SQP VQA V TA+QWYQQQQQYQQYYQQYPGY+PYQ
Sbjct: 180 TQTTASSTPGQGSNQQANPTTQSQP--AVQAVVSTADQWYQQQQQYQQYYQQYPGYDPYQ 237
Query: 241 QHYQQYYPYQQQALPQYQQPQAQSQSQMQPQAQVHPSAQFQSQLQPSHPPVQATVAAQPQ 300
QHYQQYYPYQQQA+PQ QSQ MQPQ QV P AQ Q+Q Q SHP VQ AAQPQ
Sbjct: 238 QHYQQYYPYQQQAVPQC----TQSQVYMQPQTQVQPQAQLQTQAQ-SHPQVQLPAAAQPQ 292
Query: 301 NQAQVNQQQQSH-PLH-HGQLLSQAQSYPQAQPQSYPQSQPPQPQ------PIQPHLQHM 352
+Q QVN QQQ+H P+ QL Q + P QP PPQ Q P+Q H QH+
Sbjct: 293 SQGQVNPQQQTHTPIQPQSQLPLQTHAPPHGQP-------PPQAQLHQQTNPVQQHPQHI 345
Query: 353 QLPQYQQPQSQILHTPPQI----------QHPVPQPQPQPQ--PQSNPQSLQTQVQHQSQ 400
QLPQYQQP SQ+ H Q+ QHPVPQ P Q PQ++ Q +
Sbjct: 346 QLPQYQQPHSQMQHPQSQVLTQAHSQLHPQHPVPQSHPPAQGLPQTHAQYPMQPIPQPFA 405
Query: 401 PQSHHPPHPSHRPQAQQTAASAVTSHHSYSQPQPHQQIPLSGPLQHPMYVHPHTGAQSQM 460
Q +HP +P +PQ Q ++A AVT HHSY QPQP QQ+ L HP AQ
Sbjct: 406 SQPNHPVNPHVQPQPQHSSAHAVTGHHSYPQPQPQQQLQLG------GLQHPVHYAQGGP 459
Query: 461 QNQFPQQTPSMRPAQSHATISNQPLSTGLPPLGQVANIPPAQQLPVRPHAPQPGVPVSQH 520
Q QFPQQ+P +RP QSH + N S LP GQV N+PPAQQ PV+ HA QPG+PV Q
Sbjct: 460 QPQFPQQSPLLRPPQSHVPVQNPQQSGLLPSPGQVPNVPPAQQQPVQAHAQQPGLPVHQL 519
Query: 521 PVMQPVQQPMPYQYVQQHLPFSGQ---------HQQGPFVQ------PQLRPQRPPQSLQ 565
PVMQ VQQP+ QYVQQ PF GQ HQQG ++Q QLRPQ P
Sbjct: 520 PVMQSVQQPIHQQYVQQQPPFPGQALGPVQNQVHQQGAYMQQHLHGHSQLRPQGPSH--- 576
Query: 566 LHPPAYSQPLQNVAVINGMQSHQPRNLGQPLTPNYGVHAQSYQQSATSLHVRPAQLGANQ 625
AY+QPLQNV + +G Q+HQ +NLG P YGV + S+ + VRP Q+GA+Q
Sbjct: 577 ----AYTQPLQNVPLPHGTQAHQAQNLGG--RPPYGVPTYPHPHSSVGMQVRPMQVGADQ 630
Query: 626 SSSNQSNLSWTSNQVQLSSEQQAGATSKPEMSEKNEVAVKIAHEREAESSSEKTAKTDNF 685
S N +NQ+QLSSEQ +GA S+P + + + ++ + EA+SSS+K + D
Sbjct: 631 QSGNAFR---ANNQMQLSSEQPSGAISRPTSNRQGDDIIEKS--SEADSSSQKNVRRDPN 685
Query: 686 DTPGPEAAAVGMKVPKSETDVKAAVDEIKTEVEDKTNVVDTSSKEFVTDRESHIAENVQP 745
D DV + + ++V D V+ S+ + V D I E
Sbjct: 686 D-----------------LDVASG---LGSDVSDLKTVISESNLKPVDDDNKSINE---- 721
Query: 746 INKMVKEEVIENVEGQKDSANVDIKQEEHSVSKEVQEEPLLKTSTMQQGTQFGEQSEKVQ 805
VKEE + + QKD +N D E+ K V++ P++K + + +QS K Q
Sbjct: 722 ----VKEEPKKGNDDQKDISNTDNDAED----KGVKDGPVMKNRPLPEAEHLEDQSMKSQ 773
Query: 806 KEQKV-PQAQG-------AQGPG------AVPPAGQAQAGGFVQSPPSL-YGSSTLQQRP 850
+ + V PQ G QG G ++P A Q + Q PP + +G S LQQRP
Sbjct: 774 RGRNVTPQHSGGFILHGQVQGEGLAQPSHSIPIAEQGK-----QQPPVIPHGPSALQQRP 828
Query: 851 AAPSIFQAPPPGAVPQTQAP----TQFRPPM-----FKPEVPPGGIPVSGPAASFGRGPG 901
S+ APPPG++ Q P + RP PEV G+ G GRG
Sbjct: 829 IGSSLLTAPPPGSLHHGQIPGHPSARVRPLGPGHIPHGPEVSSAGMTGLGSTPITGRGGS 888
Query: 902 HNGPHQHSFESPLVAPQGPYNLGHPHPSPVGGPPQRSVPLSGFDSHVGTMVGPAYGPGGP 961
H G QG Y GH PS P YG
Sbjct: 889 HYG------------LQGTYTQGHALPSQADRTP--------------------YG---- 912
Query: 962 MDLKQPSNPMEAEMFTGQRPGYMDGRESDSHFPGSQQRSPLGPPSGTRSNMMRMNGGPGS 1021
+ +MF QRP Y DG+ D PLG SG SN MRMNG PG
Sbjct: 913 ---------HDTDMFANQRPNYTDGKRLD----------PLGQQSGMHSNAMRMNGAPGM 953
Query: 1022 E------LRDERFKSFPDGRLNPFPVDPARSVIDRGEFEEDLKQFSRPSHLDAEPVPKLG 1075
+ LRD+RF+ F D +NPFP DP++ ++DR EFEEDLK FSRPS LD + K G
Sbjct: 954 DSSSALGLRDDRFRPFSDEYMNPFPKDPSQRIVDRREFEEDLKHFSRPSDLDTQSTTKFG 1013
Query: 1076 SHFLPSRPFDRGPHGYGMDMGPRPFERGLSYDPGLKLDPMGASAPSRFLPAYH------- 1128
++F SRP DRGP G+ G +YD G+KL+ +G PSRF P YH
Sbjct: 1014 ANFSSSRPLDRGPLDKGL--------HGPNYDSGMKLESLGGPPPSRFFPPYHHDGLMHP 1065
Query: 1129 DDAAGRS------------DSSHAHPDFPRPGRAYGRRHMGGLSPRSPFREF-----CGF 1171
+D A RS DS AHP+F PGR Y RRH G++PRSP R++ GF
Sbjct: 1066 NDIAERSIGFHDNTLGRQPDSVRAHPEFFGPGRRYDRRHRDGMAPRSPGRDYPGVSSRGF 1125
Query: 1172 GGLPGSLGGSRSVREDIGGREFRRFGDPIGNSFHDSRFPVLPSHLRRGEFEGPGRTGDLI 1231
G +PG +DI GRE RRFGD SFH SRFPVLPSH+R GEFEGP + G
Sbjct: 1126 GAIPG--------LDDIDGRESRRFGD----SFHGSRFPVLPSHMRMGEFEGPSQDG--- 1170
Query: 1232 GQEFLPSHLRRGEPLGPHNL--RLGETVGLGGFPGPARMEELGGPGNFPPPRLGEPGFRS 1289
+H RRGE LG HN+ RLGE +G G FPGPA M +L G GNF PRLGEPGFRS
Sbjct: 1171 ----FSNHFRRGEHLGHHNMRNRLGEPIGFGAFPGPAGMGDLSGTGNFFNPRLGEPGFRS 1226
Query: 1290 SFSRQGFPNDGGFYTGDMESIDNSRKRKPPSMGWCRICKVDCETVDGLDLHSQTREHQKM 1349
SFS +GFP DGG Y G++ES DNSR+RK SMGWCRICKVDCETV+GLDLHSQTREHQK
Sbjct: 1227 SFSFKGFPGDGGIYAGELESFDNSRRRKSSSMGWCRICKVDCETVEGLDLHSQTREHQKR 1286
Query: 1350 AMDMVLSIKQNAKKQKLTSGDRCSSDDANKSRNVNFDGRGKKH 1392
AMDMV++IKQNAKKQKL + D S DDA+KS+N + +GRG K+
Sbjct: 1287 AMDMVVTIKQNAKKQKLANNDHSSVDDASKSKNTSIEGRGNKN 1329
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054576|ref|XP_002298329.1| predicted protein [Populus trichocarpa] gi|222845587|gb|EEE83134.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449455164|ref|XP_004145323.1| PREDICTED: uncharacterized protein LOC101205914 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297745966|emb|CBI16022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147780120|emb|CAN64434.1| hypothetical protein VITISV_000937 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449470991|ref|XP_004153176.1| PREDICTED: uncharacterized protein LOC101214768 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449525108|ref|XP_004169561.1| PREDICTED: uncharacterized protein LOC101227701 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449529790|ref|XP_004171881.1| PREDICTED: uncharacterized LOC101207800, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356529863|ref|XP_003533506.1| PREDICTED: uncharacterized protein LOC100809964 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449474556|ref|XP_004154213.1| PREDICTED: uncharacterized protein LOC101207800, partial [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1392 | ||||||
| FB|FBgn0028847 | 328 | CG9014 [Drosophila melanogaste | 0.092 | 0.393 | 0.282 | 2.6e-09 | |
| UNIPROTKB|C9JJ10 | 182 | TRAF4 "TNF receptor-associated | 0.084 | 0.648 | 0.286 | 6.5e-09 | |
| ZFIN|ZDB-GENE-040308-1 | 470 | traf4a "tnf receptor-associate | 0.081 | 0.242 | 0.325 | 9.2e-09 | |
| UNIPROTKB|F8VSP7 | 190 | RNF41 "E3 ubiquitin-protein li | 0.093 | 0.684 | 0.277 | 1.7e-08 | |
| MGI|MGI:1914754 | 239 | Rnf151 "ring finger protein 15 | 0.084 | 0.489 | 0.296 | 1.2e-07 | |
| UNIPROTKB|F8VSB6 | 201 | RNF41 "E3 ubiquitin-protein li | 0.093 | 0.646 | 0.277 | 1.4e-07 | |
| UNIPROTKB|F1Q031 | 244 | RNF151 "Uncharacterized protei | 0.086 | 0.495 | 0.281 | 1.7e-07 | |
| ZFIN|ZDB-GENE-040305-2 | 478 | traf4b "tnf receptor-associate | 0.082 | 0.240 | 0.293 | 4.1e-07 | |
| UNIPROTKB|B1AMX7 | 172 | TRAF2 "TNF receptor-associated | 0.092 | 0.75 | 0.291 | 4.3e-07 | |
| UNIPROTKB|Q5FWL3 | 317 | rnf41 "E3 ubiquitin-protein li | 0.093 | 0.410 | 0.291 | 4.6e-07 |
| FB|FBgn0028847 CG9014 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 164 (62.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 41/145 (28%), Positives = 70/145 (48%)
Query: 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYD 59
MGFD CI+ + E CP+C ++ E +QS +C H +C+ C+ + Q CP D
Sbjct: 1 MGFDLNCIVG--HVDEELICPICTDVL--EEPVQSSECEHAFCRACIDKWMIQKQICPVD 56
Query: 60 --GYLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNS 117
G L + LV ++ + + ++ + C F +SGC L E +H + C
Sbjct: 57 RSGLLTSH-----LVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFRTHVAACEHNPK 111
Query: 118 PVV-CNR-CAIQIVHRQVQEHAQNC 140
VV C++ C +++ ++ H NC
Sbjct: 112 VVVECSKGCGMKVPKDEMSRH--NC 134
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| UNIPROTKB|C9JJ10 TRAF4 "TNF receptor-associated factor 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040308-1 traf4a "tnf receptor-associated factor 4a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8VSP7 RNF41 "E3 ubiquitin-protein ligase NRDP1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1914754 Rnf151 "ring finger protein 151" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8VSB6 RNF41 "E3 ubiquitin-protein ligase NRDP1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q031 RNF151 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040305-2 traf4b "tnf receptor-associated factor 4b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B1AMX7 TRAF2 "TNF receptor-associated factor 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5FWL3 rnf41 "E3 ubiquitin-protein ligase NRDP1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1392 | |||
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-17 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-16 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-16 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-16 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-15 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-15 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-15 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-14 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 4e-12 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 8e-10 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-09 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-08 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-07 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 1e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-07 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 7e-07 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 9e-07 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-06 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-06 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 3e-06 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 4e-06 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-06 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 8e-06 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 9e-06 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 4e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 4e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 5e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-05 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 6e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 8e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 9e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 1e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 1e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 1e-04 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 1e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 2e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 2e-04 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 2e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 3e-04 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 3e-04 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-04 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 4e-04 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 5e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-04 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 7e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 9e-04 | |
| pfam06513 | 215 | pfam06513, DUF1103, Repeat of unknown function (DU | 9e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| pfam00097 | 40 | pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING | 0.001 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 0.001 | |
| smart00817 | 411 | smart00817, Amelin, Ameloblastin precursor (Amelin | 0.001 | |
| pfam07535 | 49 | pfam07535, zf-DBF, DBF zinc finger | 0.001 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.002 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 0.002 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.002 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 0.002 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 0.003 | |
| PHA03377 | 1000 | PHA03377, PHA03377, EBNA-3C; Provisional | 0.003 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.004 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 2e-17
Identities = 47/216 (21%), Positives = 67/216 (31%), Gaps = 8/216 (3%)
Query: 259 QPQAQSQSQMQPQAQVHPSAQFQSQLQPSHPPVQATVAAQPQNQAQVNQQQQSHPLHHGQ 318
P+ + Q P++Q P Q +Q S V+A + + Q QQ P
Sbjct: 129 APKPEPQPPQAPESQ--PQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLP---QG 183
Query: 319 LLSQAQSYPQAQPQSYPQSQPPQPQPIQPHLQHMQLPQYQQPQSQILHTPPQIQHPVPQP 378
+ + ++PQ P P P PQ +Q Q PPQ+ P
Sbjct: 184 MPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPL 243
Query: 379 QPQPQPQSNPQSLQTQVQHQSQPQSHHPPHPSHRPQAQQTAASAVTSHHSYSQPQPHQQI 438
Q P + Q Q Q Q PP P +P Q + P P Q
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ--PPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQ 301
Query: 439 PLSGPLQHPMYVHPHTGAQSQMQNQ-FPQQTPSMRP 473
P PL + Q QQ ++
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQ 337
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103) | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin) | Back alignment and domain information |
|---|
| >gnl|CDD|191775 pfam07535, zf-DBF, DBF zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1392 | |||
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 99.57 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 99.26 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.19 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 99.11 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 98.97 | |
| KOG3002 | 299 | consensus Zn finger protein [General function pred | 98.86 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 98.82 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.82 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 98.8 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.66 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 98.6 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.47 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.43 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.41 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.4 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.35 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.31 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.27 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.24 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 98.23 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.23 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.19 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.18 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.11 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.05 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 98.0 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.96 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.91 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.91 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.84 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 97.8 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.75 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.56 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 97.41 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 97.36 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.17 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.04 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 97.04 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.89 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 96.86 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.74 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 96.72 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 96.72 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.7 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.62 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.47 | |
| PF03145 | 198 | Sina: Seven in absentia protein family; InterPro: | 96.4 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 96.38 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.3 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.25 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.16 | |
| PF07800 | 162 | DUF1644: Protein of unknown function (DUF1644); In | 96.14 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 96.02 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.92 | |
| PF02176 | 60 | zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A | 95.91 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 95.75 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.5 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 95.49 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.42 | |
| COG5236 | 493 | Uncharacterized conserved protein, contains RING Z | 95.28 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 95.15 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 95.07 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 94.97 | |
| PF02176 | 60 | zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A | 94.46 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.44 | |
| KOG1812 | 384 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.18 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 94.09 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 93.86 | |
| COG5220 | 314 | TFB3 Cdk activating kinase (CAK)/RNA polymerase II | 93.78 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.65 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 93.45 | |
| KOG2932 | 389 | consensus E3 ubiquitin ligase involved in ubiquiti | 93.29 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 93.24 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 92.89 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.82 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.81 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.42 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 92.29 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 92.15 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 92.03 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 91.89 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.82 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 91.38 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 91.14 | |
| KOG1815 | 444 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.72 | |
| smart00586 | 49 | ZnF_DBF Zinc finger in DBF-like proteins. | 90.67 | |
| KOG2462 | 279 | consensus C2H2-type Zn-finger protein [Transcripti | 90.66 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.48 | |
| PHA03096 | 284 | p28-like protein; Provisional | 90.29 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 89.9 | |
| PF12874 | 25 | zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG | 89.86 | |
| PF07535 | 49 | zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc | 89.81 | |
| KOG0314 | 448 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.81 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 86.2 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.7 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 85.39 | |
| KOG2231 | 669 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.73 | |
| KOG3579 | 352 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.78 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 82.36 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 81.76 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 81.38 | |
| KOG3623 | 1007 | consensus Homeobox transcription factor SIP1 [Tran | 81.13 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 80.39 |
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=174.38 Aligned_cols=153 Identities=25% Similarity=0.559 Sum_probs=133.4
Q ss_pred CCCcccccccccCCCCcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHH
Q 000610 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALA 79 (1392)
Q Consensus 1 MGFD~E~IvfVE~LeEeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLe 79 (1392)
|||+.+.+. ..++++|.|+||..++ .+|+++ .|||.||..|+.+|.+....||.|+..+..++.. ..+..++
T Consensus 7 ~~~~~~~~~--~~~~~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~---~~~~~~~ 79 (391)
T KOG0297|consen 7 MGFDLKHLG--RPLDENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL---PVPRALR 79 (391)
T ss_pred ccccccccC--CCCcccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc---CchHHHH
Confidence 899999987 5699999999999999 899995 9999999999999999988999999888776643 3577889
Q ss_pred HHhcceeeecccCCCCCceeecccCCCccCCCCCCCCcCccCCc-cchhhcHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 000610 80 ETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNR-CAIQIVHRQVQEHAQ-NCPGVQPQASQPEGVHDAA 157 (1392)
Q Consensus 80 KEI~qL~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp~-CgeqI~ReeLqeHLq-~CPk~pVkCPqcdgt~saa 157 (1392)
+++.++.+.|.+...||.|.+++..++.|+..| ..+.|+. |+..+.+.++.+|++ .|+.....|..|.-.....
T Consensus 80 ~~~~~l~i~c~~~~~GC~~~~~l~~~~~Hl~~c----~~~~C~~~C~~~~~~~d~~~hl~~~C~~~~~~c~~~~~~~~~~ 155 (391)
T KOG0297|consen 80 RELLKLPIRCIFASRGCRADLELEALQGHLSTC----DPLKCPHRCGVQVPRDDLEDHLEAECPRRSLKCSLCQSDSILI 155 (391)
T ss_pred HHHHhcccccccCCCCccccccHHHHHhHhccC----CcccCccccccccchHHHHHHHhcccccccccchhhcCccchh
Confidence 999999999999999999999999999999999 2689965 999999999999995 7999999999997554444
Q ss_pred ccccccC
Q 000610 158 AIGTAAT 164 (1392)
Q Consensus 158 s~s~~~a 164 (1392)
....+..
T Consensus 156 ~~~~h~~ 162 (391)
T KOG0297|consen 156 LLEAHEE 162 (391)
T ss_pred hhhhcCC
Confidence 4444433
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG3002 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00586 ZnF_DBF Zinc finger in DBF-like proteins | Back alignment and domain information |
|---|
| >KOG2462 consensus C2H2-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA03096 p28-like protein; Provisional | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A | Back alignment and domain information |
|---|
| >PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3623 consensus Homeobox transcription factor SIP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1392 | ||||
| 3hcs_A | 170 | Crystal Structure Of The N-Terminal Domain Of Traf6 | 3e-04 |
| >pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6 Length = 170 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 1e-17
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLT-YIVNTTQACPYDGYLVTEADSKPLVESN 75
+Y CP+C + + EA+Q+ C H +CK C+ I + CP D ++ E P +
Sbjct: 18 KYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP----D 71
Query: 76 KALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQVQE 135
I + V C GC + L H + C F + + C +C +
Sbjct: 72 NFAKREILSLMVKC--PNEGCLHKMELRHLEDHQAHCEF--ALMDCPQCQRPFQKFHINI 127
Query: 136 HAQN-CP 141
H CP
Sbjct: 128 HILKDCP 134
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
| >1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1392 | ||||
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 0.001 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 0.002 |
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 0.001
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQA---CPYDGYLVTEAD 67
I ++ CP+C L E + ++C H++CK C+ ++N + CP +T+
Sbjct: 15 INAMQKILECPIC--LELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 68 SKPLVESNKALAETIGKIT-VHCLFHR-SGCTW 98
+ + ++ + ++ + C F +G +
Sbjct: 73 LQE----STRFSQLVEELLKIICAFQLDTGLEY 101
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1392 | |||
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.14 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.09 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.09 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.09 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.01 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.88 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 98.81 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.52 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.48 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.41 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.41 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.36 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.15 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.07 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.52 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.16 | |
| d1k2fa_ | 190 | SIAH, seven in absentia homolog {Mouse (Mus muscul | 96.44 | |
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 82.68 |
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=3.3e-11 Score=89.97 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf 599983201578656667997784789803586599998517-99999993322258852355579999871221
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKPLVESNKALAETIGKI 85 (1392)
Q Consensus 12 esLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs-~sCPiCRkpItesel~pLlk~NklLeKeIekL 85 (1392)
.+++++|.|+||+++| ++||++.|||+||+.||.+|+... ..||.|+..+...++. .|..|++.|..+
T Consensus 2 ~eiP~~l~CpIc~~l~--~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~----pN~~L~~~I~~~ 70 (80)
T d2c2la2 2 RDIPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI----PNLAMKEVIDAF 70 (80)
T ss_dssp CCCCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE----ECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHH--HHHCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHH
T ss_conf 9897001185837323--40330588685638899999863776578756665423555----199999999999
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
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| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|