Citrus Sinensis ID: 000611

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390-
MSTFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
ccHHHHHHHHHHcccHHHccccccccccccccHHHHHHcccccEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccEEEccccccccccccccEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHccccccccccccccHHHHHHccHHHHHHHHccccccccccccccc
cHHHHHHHHHHHcHHHHHHcccHHHHHHHHccHHHHHHccccEEEEcccccEEEEEccHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHEEEEEEEEEEEccccccEEEEccHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHEEEccccccccccccEEEEEccccccEEEEEEHHHHHHHHHHcccccccHHHHHHcccccHHHcccccHHccccHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEEccccccccEEEEcccccEEEEccEcccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEEcccccccccccccHHcHHccccHHHHHHHHHHHHHHcccEEEEcc
MSTFFFQVMrsslpdlfdaqpDLLFQLVTMlnpsvlvengvpvysvlqepgnfvitfprsyhagfnfglncaeavnfapadwlphggfgadLYQQYHKAAVLSHEELLCVVAKsdldskvspyLKRELLRVYTKERMWRERLWRkgiikstpmgprkcpeyvgteedptciicrqyLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLtvdrnsseetsesnnlrrqisssnrpttltkkvkGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHkaenwsslpgsdsekVRLDCVNEllgfdplpcnepghlILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCIsnkcpaaiEIDVLYKLESEAldlkidvpETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNingrkdqhnVIDELNCILKegaslriqvddlpLVEVELKKAHCREKALKacdtkmpldFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARClldkddigdglsNSLVSKIEQLITSMESAANcglslgfdFHEISELQNACSTLHWCKKALSflsvspsledVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVIsapckfkrcklsdVEEVLAgckginfsfPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELgeaaafdcpeLEKVLSKVDKVENWKQRCKEIVgtsvgdknSLLGLLQKIKQSVHRSLYiynkphgsvsmtlcmccesdSKELEFLICSAckdcyhlqclrptevdrnhaeayicpycqyfesesvsqfggsplrfggkrsDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFEscyldkdlHVISNKLTITLKAREaagvfdrqsnsaLDFALARNLWRVRVSKLLegltkptiGQIQNYLKEgllmnispkdhYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIAcyqcdewyhidcvkllsapeiyicaackpqaeesstpqnvdggrtnaeflepktpspkhtnsrkklrkaEPGLAQKMLAIAnnssvfdcssgidnlwwhnrkpfrraakkrtvldslcpfiytqq
MSTFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKsdldskvspylkrellrvytkermwrerlwrkgiikstpmgprkCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSseetsesnnlrrqisssnrpttltkkvkgVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAenwsslpgsdseKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKAlkacdtkmplDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLskvdkvenWKQRCKEivgtsvgdknslLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAagvfdrqsnsaLDFALARNLWRVRVSKllegltkptigQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELiaegenlpvyLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTnaeflepktpspkhtnsrkkLRKAEPGLAQKMLAIANNSSVFDCSSGIDnlwwhnrkpfrraakkrtvldslcpfiytqq
MSTFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRnsseetsesnnLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
***FFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTV******************************VKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSL*****EKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAAC*************************************************MLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIY***
*STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWR*************CPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSE*NNL***************************************************LREAEQ*LWAGFEMDAVRDMV*************************************CVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEI***********ELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILV******D*HNVIDELN****************PLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAV*************************************CEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGD***************************GFDFHEISELQNACSTLHW**************EDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVI***********SDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQV******************************************************************************************MTLCMCCESDSKE*EFLICSACKDCYHLQCLRPT*******EAYICPYCQYFESESVS****************RMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNK**************************************************************************************************************************RARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACK******************************************************NSSVFDCSSGIDNLWWHNRK***********LDSLCPFIYTQQ
MSTFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR*****************SSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKP************GGRTNAEFLEPK**************KAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
**TFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQA***************************************PGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLIxxxxxxxxxxxxxxxxxxxxxCSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1391 2.2.26 [Sep-21-2011]
P412301554 Lysine-specific demethyla yes no 0.382 0.342 0.298 4e-50
Q30DN61545 Lysine-specific demethyla yes no 0.360 0.324 0.290 1e-49
P412291560 Lysine-specific demethyla no no 0.375 0.334 0.290 2e-49
A1YVX41516 Lysine-specific demethyla yes no 0.374 0.343 0.288 4e-49
Q38JA71556 Lysine-specific demethyla yes no 0.374 0.334 0.288 5e-49
P293751690 Lysine-specific demethyla no no 0.371 0.305 0.291 3e-48
Q3UXZ91690 Lysine-specific demethyla no no 0.374 0.308 0.294 6e-47
Q6IQX01503 Lysine-specific demethyla no no 0.285 0.264 0.294 4e-44
Q5F3R21522 Lysine-specific demethyla no no 0.367 0.335 0.279 2e-43
Q80Y841544 Lysine-specific demethyla no no 0.151 0.136 0.422 5e-43
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4 Back     alignment and function desciption
 Score =  201 bits (510), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 176/589 (29%), Positives = 292/589 (49%), Gaps = 57/589 (9%)

Query: 7    QVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFN 66
            +VM+   P+LFD+QPDLL QLVT++NP+ L+ +GVPV    Q  G FVITFPR+YH+GFN
Sbjct: 547  EVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFN 606

Query: 67   FGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVA--KSDLDSKVSPYL 124
             G N AEAVNF  ADWLP G    + Y++  +  V SHEEL+C +A     LD  ++  +
Sbjct: 607  QGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAV 666

Query: 125  KRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVAC 184
             +E+  +  +ER  R+ L  KGI ++     R+  E +  +E   CI C+   +LSA+AC
Sbjct: 667  HKEMFIMVQEERRLRKALLEKGITEAE----REAFELLPDDER-QCIKCKTTCFLSALAC 721

Query: 185  RCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQI 244
               P   VCL H   LC+C + + +L YR+TL EL  +   +   +    + +N +R  +
Sbjct: 722  YDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVAL 781

Query: 245  SSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFE 304
               +      + ++ +R   S+  E+    S ++LQ L         L EAE  +     
Sbjct: 782  EVED---GRKRSLEELRALESEARERRFPNS-ELLQRL------KNCLSEAEACVSRALG 831

Query: 305  MDAVRDMVNKLIEGRRWAEG-IRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCN 363
            + + ++     + G +     +RD L +  N             L C    +G      +
Sbjct: 832  LVSGQEAGPDRVAGLQMTLAELRDFLGQMNN-------------LPCAMHQIG------D 872

Query: 364  EPGHL-ILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRIS 422
              G L  ++ Y  EAR       A +S  S    L+ L  R   L + + E+++L +++ 
Sbjct: 873  VKGILEQVEAYQTEAR------EALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVE 926

Query: 423  SAKVWRDSVRKCI---SNKCPAAIEIDVLYKLESEALDLKIDVPETDM--LLKMIGQAES 477
             A+ W D V++ +   + +   AI   +L    S A    +D  + ++  LL +  + E 
Sbjct: 927  QAR-WLDEVKRTLAPSARRGTLAIMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEE 985

Query: 478  CRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNIN 537
                C EA R      T+E ++ E  +  V++P ++ LK+  + A  WIA +++I    N
Sbjct: 986  KAHLCLEA-RQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQ---N 1041

Query: 538  GRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHC-REKALKA 585
            G  D +  +D+L  ++  G  L + +++L  +E+++  AH  REKA K 
Sbjct: 1042 G--DHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKT 1088
Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9', H3 'Lys-27', H3 'Lys-36', H3 'Lys-79' or H4 'Lys-20'. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-4'. Participates in transcriptional repression of neuronal genes by recruiting histone deacetylases and REST at neuron-restrictive silencer elements.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2 Back     alignment and function description
>sp|A1YVX4|KDM5C_PIG Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1391
297742526 1495 unnamed protein product [Vitis vinifera] 0.971 0.903 0.580 0.0
356540444 1826 PREDICTED: uncharacterized protein LOC10 0.984 0.749 0.566 0.0
356495676 1849 PREDICTED: uncharacterized protein LOC10 0.974 0.733 0.551 0.0
357481615 1832 Lysine-specific demethylase 5D [Medicago 0.984 0.747 0.556 0.0
357481613 1836 Lysine-specific demethylase 5D [Medicago 0.984 0.746 0.554 0.0
449452470 1843 PREDICTED: uncharacterized protein LOC10 0.994 0.750 0.535 0.0
449495879 1845 PREDICTED: LOW QUALITY PROTEIN: lysine-s 0.994 0.750 0.532 0.0
359474011 1539 PREDICTED: uncharacterized protein LOC10 0.773 0.699 0.618 0.0
357481617 1586 Lysine-specific demethylase 5D [Medicago 0.801 0.703 0.564 0.0
224071864 1503 jumonji domain protein [Populus trichoca 0.577 0.534 0.625 0.0
>gi|297742526|emb|CBI34675.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1583 bits (4098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/1421 (58%), Positives = 1020/1421 (71%), Gaps = 70/1421 (4%)

Query: 5    FFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAG 64
            F +VMR+ LPDLFDAQPDLLFQLVTML+PSVL ENGV VYSV+QEPGNFVITFPRSYH G
Sbjct: 110  FEKVMRNCLPDLFDAQPDLLFQLVTMLDPSVLQENGVSVYSVIQEPGNFVITFPRSYHGG 169

Query: 65   FNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKS-DLDSKVSPY 123
            FNFGLNCAEAVNFAPADWLPHGGFGA+LYQ Y KAAVLSHEELLCVVAK+ D DSK  PY
Sbjct: 170  FNFGLNCAEAVNFAPADWLPHGGFGAELYQLYRKAAVLSHEELLCVVAKANDCDSKALPY 229

Query: 124  LKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVA 183
            LK+EL R+Y KE+  RE LW  GIIKS+PM P+KCPE+VGTEEDPTCIIC+QYL+LSAV 
Sbjct: 230  LKKELHRIYAKEKNCREGLWSNGIIKSSPMSPKKCPEFVGTEEDPTCIICQQYLFLSAVV 289

Query: 184  CRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQ 243
            C CRP+AFVCLEH +HLCECK  K  LLYRHTLAEL  L L +D+ + +ET +  +L+RQ
Sbjct: 290  CCCRPSAFVCLEHCKHLCECKPNKHRLLYRHTLAELKQLVLLIDKYNFDETPQCRDLQRQ 349

Query: 244  ISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGF 303
            +S S+    LTKKVKG  V++++L E+W+  S K+ Q  FS DAY   L+E EQFLWAG 
Sbjct: 350  LSCSDDSNALTKKVKGGHVSLAKLAEEWILRSSKIFQIPFSRDAYVNALKETEQFLWAGS 409

Query: 304  EMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCN 363
            EMDAVR +   LIE + WAEGI+DCL K E+WS     + EKV L+ VN  L  +PLPC 
Sbjct: 410  EMDAVRAVAKNLIEAQNWAEGIKDCLCKIESWSCNRSHNLEKVDLEHVNNFLNLNPLPCI 469

Query: 364  EPGHLILQNYAEEARSLIQEINAALSACSK--ISELELLYSRASGLPICIVESEKLSQRI 421
            EPGHL L+ YAEEA  L+QEI++ALS  SK  I ELE LYSRA  +PI + E EKL  RI
Sbjct: 470  EPGHLKLKGYAEEAMILVQEIDSALSTSSKSSIPELEQLYSRACEVPIYVKEMEKLMARI 529

Query: 422  SSAK-----------------------------VWRDSVRKCISNKCPAAIEIDVLYKLE 452
            S+ K                             VW D+V+KCI  KCPAAIE+DVLY+L+
Sbjct: 530  SALKMVINIIAWFSDSFFLSNLMILMKFFHPLFVWVDNVKKCILEKCPAAIEVDVLYRLK 589

Query: 453  SEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPEL 512
            SE L+L++ +PE +ML+ ++   ESC+ARC+E L G ++LK VE+LLQEL   TVN+PEL
Sbjct: 590  SEMLELQVQLPEVEMLMDLLRHVESCQARCNEILNGPINLKNVEVLLQELESITVNIPEL 649

Query: 513  ELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVE 572
            +LL+QYH DA+ WI+  ND+ VNI+ R+DQ NV+DEL CILK+G  LRIQVD+LPLVEVE
Sbjct: 650  KLLRQYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLLLRIQVDELPLVEVE 709

Query: 573  LKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAAD 632
            LKKA+CR++ALKA  TKM L  I+Q+  EA +LQIE E+LF+D+SGVLAAAM WEERAA 
Sbjct: 710  LKKAYCRKEALKARRTKMTLFSIQQLMEEAAMLQIEGEQLFVDVSGVLAAAMHWEERAAH 769

Query: 633  ILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASC 692
            I   +AQM +FED+IR S+DI V+LPSLD+V++ IS AKSWLKNS+ FL S+F  A  SC
Sbjct: 770  IFATEAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLKNSKPFLGSSFPAAHPSC 829

Query: 693  SLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGD 752
            SLL++E+LK+LVSQSK LKISL+E+T +  V+ NC  W++ + SLL++  CL + ++I +
Sbjct: 830  SLLKVEALKELVSQSKLLKISLEERTMIHSVLKNCLEWEHDSCSLLEEVDCLFNTNNIDN 889

Query: 753  GLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSL 812
             L N L+ KIE L+T +ES    GLSLGFDF EI +LQNA S L WC KALSF SV+P+L
Sbjct: 890  ALINGLIPKIEHLVTMIESILETGLSLGFDFDEIPKLQNARSILQWCSKALSFCSVAPAL 949

Query: 813  EDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAG 872
              +ESLM  AE L   C SS L +SLI GVKWLK+A EVI   C  K CKLSD EEVL+ 
Sbjct: 950  PGIESLMENAEHLPVTCASSALCSSLIDGVKWLKKASEVIPVSCNGKICKLSDAEEVLSE 1009

Query: 873  CKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCP 932
             + I  SFP+++G+L  AI+KHKLW+EQ+  FF LK  ++SWS +LQLK +         
Sbjct: 1010 VQRIKVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWSKLLQLKVI--------- 1060

Query: 933  ELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSM 992
                              C    G S          + +IK ++ RSLYIY K  G    
Sbjct: 1061 -----------------ICFMYFGISFN--------VIQIKHTLDRSLYIYKKSRGCNPR 1095

Query: 993  TLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFG 1052
              C+ C SD K+ E L CS CKDCYHLQCL  T   ++ AEAY+C YCQ+  S S+S+ G
Sbjct: 1096 DPCIHCFSDIKDQELLTCSICKDCYHLQCLGATLGHQSDAEAYVCSYCQFIGSGSISRNG 1155

Query: 1053 GSPLRFGGKRSDLRMLIELLSDSEFFCRG--IEAKDVLQEVVDVALECKTCLTDIVKFES 1110
            G+ LRFGGKR +L MLIELLSD+E  C G  IE +DV+Q++V++A+ CK CLT++  F  
Sbjct: 1156 GA-LRFGGKRPELNMLIELLSDAEGLCVGCVIEERDVVQQLVELAIACKDCLTELTDFTL 1214

Query: 1111 CYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTI 1170
             YL++DL +IS KLT  LKA E AGV+    N+ L+ ALARN WRVRV+KLLE   KP I
Sbjct: 1215 AYLNRDLSIISEKLTTALKAVEMAGVYYNHGNNRLELALARNSWRVRVNKLLEDSQKPLI 1274

Query: 1171 GQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAE 1230
              IQ  LKEGL ++I P+DH+RQKL EL  IG QWA+ AKKV +DSGAL LD+V ELI +
Sbjct: 1275 QHIQKILKEGLAISIPPEDHFRQKLTELKCIGLQWAENAKKVSMDSGALGLDEVCELITQ 1334

Query: 1231 GENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYIC 1290
            GENLPV+ EKELK LRARSMLYCICRKPYD++AMIAC QCDEWYH DC+KL SAP+IYIC
Sbjct: 1335 GENLPVHFEKELKLLRARSMLYCICRKPYDQRAMIACDQCDEWYHFDCIKLSSAPKIYIC 1394

Query: 1291 AACKPQAEESSTPQNVDGGR-TNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANN 1349
             ACKP   E S   +V+  R T A++ EP+TPSP HT SR+K  +A+P L Q M A  ++
Sbjct: 1395 PACKPHTGELSVLLSVNKERSTGAKYGEPQTPSPPHTESRRKNIEAKPSLKQMMPAAMDH 1454

Query: 1350 SSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQ 1390
             ++   S GID L+W NRKPFRR AK+R  ++SL PF + Q
Sbjct: 1455 GNILRYSDGIDCLFWRNRKPFRRVAKRRAEVESLSPFFHIQ 1495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540444|ref|XP_003538699.1| PREDICTED: uncharacterized protein LOC100789512 [Glycine max] Back     alignment and taxonomy information
>gi|356495676|ref|XP_003516700.1| PREDICTED: uncharacterized protein LOC100819576 [Glycine max] Back     alignment and taxonomy information
>gi|357481615|ref|XP_003611093.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512428|gb|AES94051.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|357481613|ref|XP_003611092.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512427|gb|AES94050.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452470|ref|XP_004143982.1| PREDICTED: uncharacterized protein LOC101216734 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495879|ref|XP_004159972.1| PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474011|ref|XP_003631389.1| PREDICTED: uncharacterized protein LOC100261599 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481617|ref|XP_003611094.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512429|gb|AES94052.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|224071864|ref|XP_002303585.1| jumonji domain protein [Populus trichocarpa] gi|222841017|gb|EEE78564.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1391
TAIR|locus:20312901116 AT1G63490 [Arabidopsis thalian 0.608 0.758 0.491 1.3e-267
ZFIN|ZDB-GENE-030131-53791483 kdm5ba "lysine (K)-specific de 0.151 0.142 0.426 1.3e-52
UNIPROTKB|Q9UGL11544 KDM5B "Lysine-specific demethy 0.150 0.136 0.419 7.4e-51
UNIPROTKB|F1PJS31476 KDM5B "Uncharacterized protein 0.150 0.142 0.423 1.1e-50
UNIPROTKB|Q30DN61545 KDM5D "Lysine-specific demethy 0.149 0.134 0.437 3.1e-50
MGI|MGI:997801548 Kdm5d "lysine (K)-specific dem 0.148 0.133 0.439 1.1e-49
UNIPROTKB|F1MUR21484 KDM5B "Uncharacterized protein 0.150 0.141 0.419 2.7e-49
UNIPROTKB|F1NRC41510 KDM5B "Lysine-specific demethy 0.150 0.139 0.428 3.6e-49
UNIPROTKB|F1NUR91521 KDM5B "Lysine-specific demethy 0.150 0.138 0.428 3.7e-49
UNIPROTKB|Q5F3R21522 KDM5B "Lysine-specific demethy 0.150 0.137 0.428 3.7e-49
TAIR|locus:2031290 AT1G63490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2122 (752.0 bits), Expect = 1.3e-267, Sum P(3) = 1.3e-267
 Identities = 425/865 (49%), Positives = 601/865 (69%)

Query:     5 FFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAG 64
             F +VMR +LPDLFDAQPDLLFQLVTML+P+VL EN VPVY+VLQEPGNFVITFP+S+HAG
Sbjct:   110 FEKVMRKTLPDLFDAQPDLLFQLVTMLSPTVLQENKVPVYTVLQEPGNFVITFPKSFHAG 169

Query:    65 FNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDL-DSKVSPY 123
             FNFGLNCAEAVNFA ADWLP+GG GA+LY+ Y K +V+SHEELLCVVAK +  +++ S +
Sbjct:   170 FNFGLNCAEAVNFATADWLPYGGSGAELYRLYRKPSVISHEELLCVVAKGNCCNNEGSIH 229

Query:   124 LKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVA 183
             LK+ELLR+Y+KE+ WRE+LW+ GI++S+PM   +C + VG EEDPTCIIC+Q+L+LSA+ 
Sbjct:   230 LKKELLRIYSKEKTWREQLWKSGILRSSPMFVPECADSVGIEEDPTCIICQQFLHLSAIV 289

Query:   184 CRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRXXXXXXXXXXXLRRQ 243
             C CRP+ F CLEHW+HLCEC+  KL L YR+TLAEL  +   V++            +R 
Sbjct:   290 CNCRPSVFACLEHWKHLCECEPTKLRLEYRYTLAELDMMVQEVEKFGGCKTQETKISQRP 349

Query:   244 ISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGF 303
              S + R   L KK +G++V+ ++  ++WL  + KVL   FSS  Y TLL+E+EQFLWAG 
Sbjct:   350 SSGTKRSIALNKKQEGMQVSQARPADKWLLRASKVLDAAFSSVEYATLLKESEQFLWAGS 409

Query:   304 EMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCN 363
             EMD VRD+   L + + WAE + DCL K E   +    DS KV L+ ++ELL  +P+PC 
Sbjct:   410 EMDRVRDVTKSLNKAKIWAEAVSDCLSKVEGEVN---DDSMKVHLEFIDELLRVNPVPCF 466

Query:   364 EPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISS 423
               G+L L++YAEEAR L ++I++ALS+   I++LELL+S  S  PI + + E LS++ISS
Sbjct:   467 NSGYLKLKDYAEEARKLSEKIDSALSSSPTITQLELLHSEVSRSPISLKKHEILSKKISS 526

Query:   424 AKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCS 483
             AK+     ++ +++  P  IE+D L+KL SE L+L + +PET+ +L ++ ++ES R + +
Sbjct:   527 AKMLAKRAKRYLTDAKPPGIEMDALFKLNSEMLELHVQLPETEGILDLVKKSESARDKSN 586

Query:   484 EALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQH 543
             + L GS+SL+ VE LL E   F++N+PEL +L+QYH D + WI+R ND++V++   KDQ 
Sbjct:   587 KVLTGSLSLENVEELLHEFDSFSINVPELNILRQYHVDTLSWISRFNDVMVDVREGKDQR 646

Query:   544 NVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAV 603
              +I +L+ +L++GASL IQV+ LPLVEVELKKA CREKA      +  LDFI Q+ +EAV
Sbjct:   647 KLISDLSSLLRDGASLGIQVEGLPLVEVELKKASCREKARTVYTARKSLDFIEQLLSEAV 706

Query:   604 ILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEV 663
             IL IE E++F+++SG+L+ A  WEERA+ IL ++ QM E +D++R S +I  VLP+L  +
Sbjct:   707 ILHIEEEEIFVEISGILSTARCWEERASTILENETQMYELKDLVRMSVNIDAVLPTLQGI 766

Query:   664 QNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKV 723
             +N IS+A++WL+ SE FL++  ++A + CS+L L  LKDLV+Q+K L + L+E   LE +
Sbjct:   767 ENTISSAETWLQKSEPFLSATSSMASSPCSMLELPVLKDLVTQAKLLNVQLQEPRILETL 826

Query:   724 INNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDF 783
             + NCERWQ     LLQ+   LLD   I DG  ++++ KI  LIT ++SA   GL+LG +F
Sbjct:   827 LLNCERWQCDNHQLLQETEDLLDNAKIDDGTHSNILPKIMDLITRVDSARRSGLALGLNF 886

Query:   784 HEISELQNACSTLHWCKKALSFLSVSPS---LEDV--ESLMAVA----EGLSTRCFSS-- 832
              E+ +L+ A   L WC K ++  S SP+   LEDV   SL  +     EG +        
Sbjct:   887 DELPKLRTASLKLGWCCKTITLSSSSPTSELLEDVGKPSLQHIQQHLKEGQTLEILPEEY 946

Query:   833 MLWNSLIH----GVKWLKRALEVIS 853
              L   L+     G++W KRA +V++
Sbjct:   947 YLGKRLMELKDTGLEWAKRARKVVT 971
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJS3 KDM5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q30DN6 KDM5D "Lysine-specific demethylase 5D" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:99780 Kdm5d "lysine (K)-specific demethylase 5D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUR2 KDM5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRC4 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUR9 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1391
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 8e-24
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 5e-16
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 5e-16
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 1e-14
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 8e-12
pfam0062851 pfam00628, PHD, PHD-finger 8e-07
smart0024947 smart00249, PHD, PHD zinc finger 9e-07
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 1e-05
pfam0062851 pfam00628, PHD, PHD-finger 2e-05
smart0024947 smart00249, PHD, PHD zinc finger 6e-05
COG5034271 COG5034, TNG2, Chromatin remodeling protein, conta 3e-04
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 0.004
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score = 97.4 bits (243), Expect = 8e-24
 Identities = 35/64 (54%), Positives = 42/64 (65%)

Query: 14  PDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAE 73
                 QPDLL  L T+++P  L+ENG+PVY  +Q+PG FV TFP  YH  FN G N AE
Sbjct: 51  KHNGGEQPDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAE 110

Query: 74  AVNF 77
           AVNF
Sbjct: 111 AVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1391
PF08429335 PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi 100.0
PF08429335 PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi 100.0
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 99.97
KOG0958690 consensus DNA damage-responsive repressor GIS1/RPH 99.87
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.53
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.5
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 99.09
KOG1973274 consensus Chromatin remodeling protein, contains P 99.0
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 98.61
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.51
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.26
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.25
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.99
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 97.98
KOG1512381 consensus PHD Zn-finger protein [General function 97.68
KOG1973274 consensus Chromatin remodeling protein, contains P 97.6
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 96.75
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.56
KOG4299 613 consensus PHD Zn-finger protein [General function 96.25
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 96.05
KOG2752345 consensus Uncharacterized conserved protein, conta 95.8
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.68
KOG1512381 consensus PHD Zn-finger protein [General function 95.59
KOG1244336 consensus Predicted transcription factor Requiem/N 95.38
KOG1844 508 consensus PHD Zn-finger proteins [General function 95.08
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 94.92
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 94.76
KOG0957707 consensus PHD finger protein [General function pre 94.72
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.39
KOG0954 893 consensus PHD finger protein [General function pre 94.18
KOG4299613 consensus PHD Zn-finger protein [General function 94.12
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 93.69
KOG0954 893 consensus PHD finger protein [General function pre 93.43
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 91.95
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 91.14
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 90.67
KOG0957 707 consensus PHD finger protein [General function pre 90.65
KOG1244336 consensus Predicted transcription factor Requiem/N 89.63
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 89.58
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 89.38
KOG0383 696 consensus Predicted helicase [General function pre 88.71
PF07227446 DUF1423: Protein of unknown function (DUF1423); In 88.46
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 87.71
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 86.63
COG5141669 PHD zinc finger-containing protein [General functi 83.47
KOG0956 900 consensus PHD finger protein AF10 [General functio 81.0
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-40  Score=384.72  Aligned_cols=317  Identities=24%  Similarity=0.383  Sum_probs=289.5

Q ss_pred             HHHHhhHHHhhc--cCCChhHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCC-----C
Q 000611          269 EQWLSCSLKVLQ--GLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPG-----S  341 (1391)
Q Consensus       269 e~W~~~~~~iL~--~~~~l~~l~~LL~EaE~~~~~~~~~~~lr~l~~~l~ea~~W~e~a~~c~s~~q~~~~~~~-----~  341 (1391)
                      |.|.++++++|.  ..++++.|++||+|||+++||.+  ++|+.|+..|.+|+.|++.|+.+++++++.+.+..     +
T Consensus         1 d~W~~k~~~~l~~~~k~~L~~l~~Ll~e~e~~~~~~~--~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~   78 (335)
T PF08429_consen    1 DTWAEKVKEALEESPKPSLKELRSLLSEGEKIPFPLP--ELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQK   78 (335)
T ss_pred             ChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccccc
Confidence            479999999994  45689999999999999999997  56677778899999999999999999998765542     3


Q ss_pred             CCccccHHHHhhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhhcCCCccccccHHHH
Q 000611          342 DSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEINAALSA--CSKISELELLYSRASGLPICIVESEKLS  418 (1391)
Q Consensus       342 ~~~kl~leeL~~ll~-~~~lpc~~pe~~~Lkel~~~~e~~~~e~~~~L~~--~~~i~eLe~Ll~~g~~~~V~lpEl~kLk  418 (1391)
                      ++.++++++|+.|++ +.+|||++||+.+|+++++.+++|+.+|+.+|+.  .+++++++.||++|.+|+|++||+..|+
T Consensus        79 ~~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~  158 (335)
T PF08429_consen   79 SRNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLR  158 (335)
T ss_pred             ccccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHH
Confidence            678899999999999 9999999999999999999999999999999986  4679999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHhhccCCCcccHHHHHHHHHHhhhcCCCCCch----HHHHHHHHHHHHHHHHHHHhhc-CCCCHH
Q 000611          419 QRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET----DMLLKMIGQAESCRARCSEALR-GSMSLK  493 (1391)
Q Consensus       419 ~rle~~k~W~~~v~~~L~~~~~~~~tLe~Lr~Ll~Ea~~l~v~~Pe~----d~Lqell~~aE~we~kAq~lL~-~~~sl~  493 (1391)
                      +++++.+ |+++|+.++..  +...||++|+.|+++|..++.  |..    ..|+++++.|+.|+++|+.+|+ ..++++
T Consensus       159 ~~l~~~~-W~~~~~~~~~~--~~~~tL~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~  233 (335)
T PF08429_consen  159 RRLEQLE-WLEEAREILSD--PDRLTLDELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLE  233 (335)
T ss_pred             HHHHHHH-HHHHHHHHhcc--ccCCcHHHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            9999998 99999999753  225899999999999999874  544    4778889999999999999999 569999


Q ss_pred             HHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhccCCcCCCCchhHHHHH
Q 000611          494 TVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVEL  573 (1391)
Q Consensus       494 eLe~ll~e~~~lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~~~~~~~~~~p~l~eL~~Ll~~g~~L~V~lpel~~LE~~L  573 (1391)
                      +|++|++++.+|||++|.+..|++++.+|++|+.+++.++..   .++.+|+++++++|+.+|+.|+|.++++++||..+
T Consensus       234 ~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~  310 (335)
T PF08429_consen  234 QLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELVAESEELPVKLEELSDLEKQL  310 (335)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999852   24789999999999999999999999999999999


Q ss_pred             HHhH-HHHHHHhhhcCCCCHHHH
Q 000611          574 KKAH-CREKALKACDTKMPLDFI  595 (1391)
Q Consensus       574 ~~a~-Wl~~a~k~~~~k~sL~~L  595 (1391)
                      .+++ |+++++++|+++|+...|
T Consensus       311 ~~~~~W~~~~~k~F~k~ns~~~l  333 (335)
T PF08429_consen  311 KRAEDWMEKAKKLFLKKNSPLHL  333 (335)
T ss_pred             HHHHHHHHHHHHHhcccCchhhh
Confidence            9999 999999999999976654

The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1391
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 2e-16
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 2e-15
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 2e-15
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 2e-15
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 2e-15
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 5e-14
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 1e-13
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 7e-13
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 7e-13
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 9e-13
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 9e-13
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 9e-13
1wem_A76 Solution Structure Of Phd Domain In Death Inducer- 7e-07
2fui_A62 Nmr Solution Structure Of Phd Finger Fragment Of Hu 2e-05
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 4e-05
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 4e-05
3o70_A68 Phd-Type Zinc Finger Of Human Phd Finger Protein 13 1e-04
2lv9_A98 Solution Nmr Structure Of The Phd Domain Of Human M 2e-04
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 5e-04
2k16_A75 Solution Structure Of The Free Taf3 Phd Domain Leng 5e-04
3o7a_A52 Crystal Structure Of Phf13 In Complex With H3k4me3 7e-04
3kqi_A75 Crystal Structure Of Phf2 Phd Domain Complexed With 7e-04
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 7   QVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFN 66
           ++ R   PD+       L   V +++P+VL ENG+P   + QE G F++TFP  YHAGFN
Sbjct: 244 RLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFN 303
Query: 67  FGLNCAEAVNFAPADWLPHG 86
            G NCAEA+NFA   W+ +G
Sbjct: 304 HGFNCAEAINFATPRWIDYG 323
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer- Obliterator 1(Dio-1) Length = 76 Back     alignment and structure
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human Bptf In Free State Length = 62 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|3O70|A Chain A, Phd-Type Zinc Finger Of Human Phd Finger Protein 13 Length = 68 Back     alignment and structure
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain Length = 75 Back     alignment and structure
>pdb|3O7A|A Chain A, Crystal Structure Of Phf13 In Complex With H3k4me3 Length = 52 Back     alignment and structure
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With H3k4me3 Peptide Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1391
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 8e-43
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 2e-41
3dxt_A354 JMJC domain-containing histone demethylation PROT; 1e-30
2ox0_A381 JMJC domain-containing histone demethylation PROT; 4e-28
3opt_A373 DNA damage-responsive transcriptional repressor R; 2e-23
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 7e-22
3o70_A68 PHD finger protein 13; PHF13, structural genomics 5e-18
1wem_A76 Death associated transcription factor 1; structura 7e-16
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 9e-14
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 6e-05
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 4e-13
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 3e-05
1wee_A72 PHD finger family protein; structural genomics, PH 8e-13
1wee_A72 PHD finger family protein; structural genomics, PH 6e-04
1we9_A64 PHD finger family protein; structural genomics, PH 6e-12
1we9_A64 PHD finger family protein; structural genomics, PH 7e-05
2k16_A75 Transcription initiation factor TFIID subunit 3; p 1e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-06
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 4e-10
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 5e-10
1weu_A91 Inhibitor of growth family, member 4; structural g 5e-10
1wew_A78 DNA-binding family protein; structural genomics, P 9e-10
3kv5_D 488 JMJC domain-containing histone demethylation prote 9e-10
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 6e-09
1x4i_A70 Inhibitor of growth protein 3; structural genomics 1e-08
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 2e-08
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-08
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 2e-08
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-07
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 4e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 8e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 7e-06
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 3e-06
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 2e-05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 3e-04
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 3e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 5e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 8e-04
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 6e-04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 6e-04
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 8e-04
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
 Score =  163 bits (414), Expect = 8e-43
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 10  RSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGL 69
             ++    D                 L  + +PVY  +Q PG+ V     + H     G 
Sbjct: 279 WETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGW 338

Query: 70  NCAEAVNFAPADW--LPHGGFGADLYQQYHKAAVLSHEELLCVVAKS--DLDSKVSPYLK 125
               A N  P             +  +  +  +++    +   VA++    D  +   +K
Sbjct: 339 CNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIK 398

Query: 126 RELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQ----YLYLSA 181
             LL+     ++ RE L R G               V  E    C  C       L++++
Sbjct: 399 FCLLQSMKHCQVQRESLVRAGK-------KIAYQGRVKDEPAYYCNECDVEVFNILFVTS 451

Query: 182 VACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF 223
                      C            + + +L ++   EL   +
Sbjct: 452 ENGSRNTYLVHCEGCARRRSAGL-QGVVVLEQYRTEELAQAY 492
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Length = 177 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1391
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-13
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 0.003
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 3e-11
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-06
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 6e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 5e-10
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 8e-09
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 5e-08
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 7e-07
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 1e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 7e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 4e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 5e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.003
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.004
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)

Query: 1251 LYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--------PEIYICAACKPQAEESS 1301
            LYCICR+P++ + MI C +C+EW+H DCV +  A         E YIC  C   +  SS
Sbjct: 17   LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1391
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.96
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.66
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.65
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.58
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.56
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.4
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.32
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.09
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.05
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.91
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.87
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.84
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.71
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.68
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.63
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.62
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.57
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.57
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.56
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.5
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.47
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.28
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.6e-10  Score=92.08  Aligned_cols=51  Identities=35%  Similarity=0.960  Sum_probs=43.3

Q ss_pred             CCCEEEEECCCCC-CCCEEEECCCCCEEECCCCCCCCC----CCCEECCCCCCCCC
Q ss_conf             9823888355889-988165158998136223566678----99146289878877
Q 000611         1248 RSMLYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSA----PEIYICAACKPQAE 1298 (1391)
Q Consensus      1248 ~~~~yC~C~~~~~-~~~Mi~Cd~C~~W~H~~Cvg~~~~----~~~~~C~~C~~~~~ 1298 (1391)
                      ..++||+|+++++ +++||+||.|+.|||..|+|+...    .+.|+|+.|.....
T Consensus        10 ~~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          10 LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             CCCEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCCCCCC
T ss_conf             58868489896599986888998997396034174510278787789956738768
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure