Citrus Sinensis ID: 000621

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------139

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGDRELKQKGGRDNL

ccHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccEEEEccHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHcccccEEEEccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHccccccEEEEccccccHHHHHccccccccccEEEEEEcccccccccccEEEEEccccccccccccccccccEEEccccHHcccccccccccccccEEEEcccHHHHHcccccccccHHccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcHHHHHcccccccccEEEcccccEEEEEcccccccccccccEEEEEEEEcccHHHcHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHccccEEEEEccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEccccccccccccEEEEEEcccHHHHHHccccccEEcccEEEEEcccccccccccccccccEEEEEEccccccccEEEEEEcccccHHHcccccEEEEEcEEEEEEccccccccEEEccccccccHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHHHHccccccccccccEEEcEEEEEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHcccEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccccccccccccEEEEccccEEEEEEccHHHHHHcccccc

ccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEEcccHHHHHHHHccccHcccEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccEEEEccccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHccccEEEEEEHccccHHHHHHHccccccccEEEEEEcEEEEEEEEccEEEEEccccEEEccccccccccEEEEEEccHHHHHHHcccccccccccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHcHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEcccHHHHHccccccEEEEEEEEEccHHHHHHHEcccHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHcccEHHHHHHccccccccHHHcccEEEEccHHHHHHHHHHcccEEcccEEEEEccccEcccccccccccEEEEEEEcccccccEEEEEEccccccEEEEHcHHHEEEccEEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccHHEEEHHHEEEcEccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHcHHHHHHHHHHHcccEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccHHHHHHcccccEEEEEcEEEEEEEEccHHHccccccccc

mvglwesrlngahclnlkliphvvvpsdaDELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSnrlgsrnsyAVFCElnerkkgefkngMHCVLKYLddpqnvakkesydanvdvfrfedcqrfdwSRIQAFIVRECKRledglpiyMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREesrgcyeddsvicypsfssaqhfdskviYMTDHCLLQHfmndrdlsrisciivdeahersLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYfydcgishvvgrnfpvdvryvpcatagtsAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWAcekfdapsavalpfhgqlsfdeqfcvfksypgrrkvifatnvaetsltipgvkfvidsgmvkesyfepgtgmnVLRVCRVSQSsanqragragrtepgrcyrlysksdfetrplnqepeihrVHLGIAVLRILALGIrdvqgfdfidapSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFcrvgsddekikADCLKVqfchrngdlfTLLSVYRewdslpreernkwcwensvnaksLRRCQDTIKELETCLEKELAIIipsywlwnphkyteYDKWLKEIILSALAENVAMFSGYDQLGYEVAmtgqhvqlhpscsllifgqkptWVVFGELLSVNNQYLVCVTafdfdslstlcpsplfdvsmMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIekclyqgagvspsvalfgagaeiKHLELERRFLTVDvyhsnanilddKELLMFLEKnasgsicsihkfavgqdsdekdkwgrvtfltpdtagkatelngveyngsllkvvpsratlggdnkmytfpavkakvywprrlskgfavvkcdatdvEFLVKDFFdlaiggryvrceigrrSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLvrgdavecpqfDAFEEALLREISRfmpkrnshanccrvqvfppepkDAFMKAFITFDGRLHLEAAKALEQLEgkvlpgcgpwqkmkcqqlfhsslscpasvYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEelmrgrtvnhasltpTILQHLFTRDGINLRKSLQQETRTFILFdrhtlsvkifgapdNIAEAQQKLIQSLLTYHESKQLEihlrggvlppdlMKEVVRRFgpdlqglkekvpgaefslntrRHVISvhgdrelkqkggrdnl

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANvsnrlgsrnsYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVReckrledglpIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFatnvaetsltipgvkfVIDSGMVKESYFEPGTGMNVLRVCRVSQSsanqragragrtepgrcYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLvklgieprlgKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQfchrngdlftlLSVYREWdslpreernkwcwensvnakslrrCQDTIKELETCLEKELAIiipsywlwnPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFavgqdsdekdKWGRVTFltpdtagkatelngveyngslLKVVPSRatlggdnkmytfpaVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVIsgldkelsedeilgelrkvttrrIRDLFLvrgdavecpqFDAFEEALLREISRFmpkrnshancCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVErnyngsyrvrissnatktvadlrRPVEElmrgrtvnhasltptilQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGpdlqglkekvpgaefslntrrhvisvhgdrelkqkggrdnl

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSlntdlllalvkdllCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKsnsnvlslvsrlrsTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGDRELKQKGGRDNL

***LWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRV*******************CYRLYS************PEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGL********F*******V******************

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLR******************************************************************************************************************LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFC*****************FCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPL*******************************************************NVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFA*****DEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVP*************FPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGD************

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVS**************EPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHG*************

MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQ*V********NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSS***********EPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGDR***********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1387	2.2.26 [Sep-21-2011]
P0CE10		1787	Putative uncharacterized	yes	no	0.988	0.767	0.610	0.0
Q38953		1168	Probable pre-mRNA-splicin	no	no	0.446	0.529	0.360	1e-115
Q54F05		1160	ATP-dependent RNA helicas	yes	no	0.441	0.527	0.371	1e-111
Q14562		1220	ATP-dependent RNA helicas	yes	no	0.440	0.500	0.359	1e-109
A2A4P0		1244	ATP-dependent RNA helicas	yes	no	0.440	0.491	0.359	1e-109
Q09530		1200	Probable pre-mRNA-splicin	yes	no	0.436	0.505	0.358	1e-106
O42643		1168	Pre-mRNA-splicing factor	yes	no	0.437	0.519	0.353	1e-104
Q10752		1055	Pre-mRNA-splicing factor	no	no	0.435	0.572	0.350	1e-100
Q7YR39		1044	Putative pre-mRNA-splicin	no	no	0.434	0.577	0.353	1e-100
O60231		1041	Putative pre-mRNA-splicin	no	no	0.434	0.579	0.353	1e-100

>sp\|P0CE10\|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1	Back alignment and function desciption

 Score = 1719 bits (4452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 856/1402 (61%), Positives = 1084/1402 (77%), Gaps = 31/1402 (2%)

Query: 1    MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLME-GELVNKWLKM 59
            +V LW+ RL G H    +LIP+VVVPSD DEL++RLR+LF  HV  LME G+ V K    
Sbjct: 144  VVALWDYRLQGRHDFVPELIPNVVVPSDMDELKDRLRDLFSSHVLSLMENGQGVKKVRME 203

Query: 60   KDDKCDEIANVSNRLGSRNSYAVFCELNERKKG-------------EFKNGMHCVLKYL- 105
             DDK  ++A+ S++ G +  + VF    E+KK              EF N M  +L+YL 
Sbjct: 204  IDDKSRQVASFSSKRGLK--FEVF----EKKKALEAERDLVVNRLDEFNNAMKSILRYLI 257

Query: 106  -DDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRR 164
              D       +  D +V VF  E    +DW RI   I+REC+RLEDGLPIY YR+ IL++
Sbjct: 258  GQDGYEFDVDDEDDEDVAVFSLEGA--YDWRRIHYLILRECRRLEDGLPIYAYRRQILKK 315

Query: 165  IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGC 224
            I+ EQI+VLIGETG GKSTQLVQFLADSG+AA +SIVCTQPRKIAA++L  RVREES GC
Sbjct: 316  IHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMTLTDRVREESSGC 375

Query: 225  YEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDL 284
            YE+++V C P+FSS +   SKV+YMTD+CLLQH+M DR LS ISC+I+DEAHERSLNTDL
Sbjct: 376  YEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDL 435

Query: 285  LLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGT 344
            LLAL++ LL RR DLRLVIMSATADA+QLS+Y +DCGI HV GRNFPV++ Y P  T   
Sbjct: 436  LLALLRKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEEN 495

Query: 345  SAV---ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQL 401
            S V   ASY  DVV+M  E+H TEKEGTILAFLTS+ EVEWACE+F APSA+ALP HG+L
Sbjct: 496  SVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKL 555

Query: 402  SFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVC 461
            SF+EQF VF++YPGRRKVIFATN+AETSLTIPGVK+VIDSGMVKES +EP TGM++L+VC
Sbjct: 556  SFEEQFMVFQNYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVC 615

Query: 462  RVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIR 521
            +VSQSSA QRAGRAGRTEPGRCYRLYSK+DF++  LNQEPEI RVHLG+A+LR+LALGI 
Sbjct: 616  QVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGID 675

Query: 522  DVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILS 581
            ++  F+F+DAP  +AI MAI+NLVQLGA+   NGV ELT+EG  LVKLG+EP+LGKLIL 
Sbjct: 676  NIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILG 735

Query: 582  CFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREW 641
            CFR R+G+EG+VLAAVMANASSIFCRVG+ D+K+KAD LKVQFC+ NGDLFTLLSVY+EW
Sbjct: 736  CFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCNDNGDLFTLLSVYKEW 795

Query: 642  DSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDK 701
             SLPR+ RNKWCWENS+NAKS+RRC+DT+KELE C+E+EL ++ PSYW+WNP++ T++DK
Sbjct: 796  ASLPRDRRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDK 855

Query: 702  WLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSV 761
            +LK +IL++LAENVAM++GYDQLGYEVA+T Q VQLHPSCSLL FGQKP+WVVFGELLS+
Sbjct: 856  YLKMVILASLAENVAMYTGYDQLGYEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELLSI 915

Query: 762  NNQYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVL 821
             +QYLVCVTAFDF++L  L P P FD S M+ ++L V+ + G  S +LK+FCGKSN ++L
Sbjct: 916  VDQYLVCVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRSLL 975

Query: 822  SLVSRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEK 881
            S+VSR RS   DERIGI+V+VDQN+I L+AS  D+E+V  LV+D LE EKKW+ NEC+EK
Sbjct: 976  SIVSRARSLCSDERIGIQVDVDQNEIRLYASPLDMEKVSALVNDALECEKKWMRNECLEK 1035

Query: 882  CLYQGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSI 941
             L+ G G  P +ALFG+GA+IKHLE+++RFLTVDV++   +++DD+ELL FLEK   G I
Sbjct: 1036 YLFHGRGQIP-IALFGSGAQIKHLEVDQRFLTVDVHYYGDDVVDDRELLTFLEKKIDGCI 1094

Query: 942  CSIHKFAVG-QDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNK 1000
            CSI+KFA   QD DEK+KWGR+TFLTP++A KATE+   ++ GS+LKV PS +T GG  K
Sbjct: 1095 CSIYKFAANKQDCDEKEKWGRITFLTPESAMKATEIQKFDFKGSVLKVFPSLSTGGGIFK 1154

Query: 1001 MYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAV 1060
            M  F +V AK+ WPR+ S G   +KC + D+  ++ D   L IG  YV  +  + S D++
Sbjct: 1155 MPYFSSVTAKIRWPRKESSGRGCLKCPSGDIHSILGDITSLEIGTNYVHIQRDQLSNDSI 1214

Query: 1061 VISGLDKELSEDEILGELRKVTTRRIRDLFLVRGD-AVECPQFDAFEEALLREISRFMPK 1119
            +ISGL  +LSE E+L  L   T RR  + F+ R   +V+CP   A EE L + I   M  
Sbjct: 1215 LISGLG-DLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPTACEEELHKRIFARMSA 1273

Query: 1120 RNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQ 1179
            +N   NC +VQVF P+  + FM+A I FDGRLHLEAAKAL++L G+VLPGC PWQK+KC+
Sbjct: 1274 KNPEPNCVQVQVFEPKEDNYFMRALIKFDGRLHLEAAKALQELNGEVLPGCLPWQKIKCE 1333

Query: 1180 QLFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVAD 1239
            QLF SS+ C AS+Y+ +K +LN LLA   R  G EC +E  +NG+YRV+I++ AT+ VA+
Sbjct: 1334 QLFQSSIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNGAYRVKITAYATRPVAE 1393

Query: 1240 LRRPVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFG 1299
            +RR +EEL+RG+ +NH   TP ++QHL +RDGINL + +QQET T+IL DRH L+V+I G
Sbjct: 1394 MRRELEELLRGKPINHPGFTPRVVQHLMSRDGINLMRKIQQETETYILLDRHNLTVRICG 1453

Query: 1300 APDNIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGA 1359
              + IA+A+Q+L+QSL+ YHESKQLEIHLRG  + PDLMKEVV+RFGP+LQG+KEKV G 
Sbjct: 1454 TSEKIAKAEQELVQSLMDYHESKQLEIHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGV 1513

Query: 1360 EFSLNTRRHVISVHGDRELKQK 1381
            +  LNTR HVI VHG +E++Q+
Sbjct: 1514 DLKLNTRYHVIQVHGSKEMRQE 1535

Arabidopsis thaliana (taxid: 3702)

>sp\|Q38953\|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2	Back alignment and function description

>sp\|Q54F05\|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1	Back alignment and function description

>sp\|Q14562\|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1	Back alignment and function description

>sp\|A2A4P0\|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1	Back alignment and function description

>sp\|Q09530\|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1	Back alignment and function description

>sp\|O42643\|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp22 PE=1 SV=1	Back alignment and function description

>sp\|Q10752\|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc28 PE=3 SV=2	Back alignment and function description

>sp\|Q7YR39\|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1	Back alignment and function description

>sp\|O60231\|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1387
297741837		1988	unnamed protein product [Vitis vinifera]	0.989	0.690	0.696	0.0
359480508		1686	PREDICTED: putative uncharacterized prot	0.989	0.814	0.696	0.0
224083569		1743	predicted protein [Populus trichocarpa]	0.989	0.787	0.674	0.0
356569232		1729	PREDICTED: putative uncharacterized prot	0.985	0.790	0.648	0.0
356538140		1736	PREDICTED: putative uncharacterized prot	0.985	0.787	0.626	0.0
449439023		1735	PREDICTED: putative uncharacterized prot	0.991	0.792	0.621	0.0
357463271		1718	Pre-mRNA splicing factor ATP-dependent R	0.981	0.792	0.619	0.0
5262156		2322	putative protein [Arabidopsis thaliana]	0.988	0.590	0.610	0.0
297807069		1782	hypothetical protein ARALYDRAFT_487868 [	0.988	0.769	0.611	0.0
18411509		1787	zinc finger-related and helicase and IBR	0.988	0.767	0.610	0.0

>gi\|297741837\|emb\|CBI33150.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2005 bits (5195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 975/1399 (69%), Positives = 1165/1399 (83%), Gaps = 26/1399 (1%)

Query: 1    MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLMEGELVNKWLKMK 60
            MV LWE RL G H    KLI ++++PSD DEL  RL+  F +H++ ++EGE V KW    
Sbjct: 119  MVYLWELRLEGKHLFTPKLIRNIIMPSDEDELRSRLQTTFGNHIRAILEGEEVKKWQNEL 178

Query: 61   DDKCDEIANVSNRLGSRNSYAVFCELNERKKG-------------EFKNGMHCVLKYLDD 107
                DEIA V   L   N  A   +L   KKG             EFK+ M C+L YL+ 
Sbjct: 179  QHLSDEIAKVQGLLRKPNKIAAHEKLTSEKKGLLCDRDLISKRLKEFKSSMSCILNYLEG 238

Query: 108  PQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYG 167
              +   ++ YD  ++VFRF     FDWSRI   I REC+RL+DGLP+Y +R++IL +I+ 
Sbjct: 239  KHS---QQCYDEEIEVFRFNG--DFDWSRIYHLIRRECRRLKDGLPLYAFRREILHQIHT 293

Query: 168  EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYED 227
            +QI+VLIGETG GKSTQLVQFL DSGIAA  SI+CTQPRKIAA+SLAQRVREES GCYED
Sbjct: 294  QQIMVLIGETGSGKSTQLVQFLVDSGIAANDSIICTQPRKIAAVSLAQRVREESSGCYED 353

Query: 228  DSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLA 287
            +S+ICYP++SSA+ F SKV YMTDHCLLQH+MND++LS ISCIIVDEAHERSLNTDLLLA
Sbjct: 354  NSIICYPTYSSARQFLSKVTYMTDHCLLQHYMNDKNLSGISCIIVDEAHERSLNTDLLLA 413

Query: 288  LVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSA- 346
            L+K LL ++ D+R++IMSATADA QLSKYF+ CG  HVVGRNFPVDVRY PCA+ GTS  
Sbjct: 414  LIKALLSQKLDMRVIIMSATADADQLSKYFFGCGTFHVVGRNFPVDVRYAPCASEGTSGS 473

Query: 347  --VASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFD 404
              +ASYV DV+RM  E+H TEKEGTILAFLTS+MEVEWACEKF APSAVAL  HG+LS++
Sbjct: 474  ATIASYVLDVMRMANEIHKTEKEGTILAFLTSQMEVEWACEKFQAPSAVALALHGKLSYE 533

Query: 405  EQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVS 464
            EQF VF+SYPG+RKVIF+TN+AETSLTIPGVK+VIDSGMVKES FEPGTGMNVLRVC +S
Sbjct: 534  EQFRVFQSYPGKRKVIFSTNLAETSLTIPGVKYVIDSGMVKESRFEPGTGMNVLRVCSIS 593

Query: 465  QSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQ 524
            QSSANQRAGRAGRTEPGRCYRLYSK DFE  P +QEPEI RVHLG+AVLRILALGI++++
Sbjct: 594  QSSANQRAGRAGRTEPGRCYRLYSKDDFELMPPHQEPEIRRVHLGVAVLRILALGIKNLE 653

Query: 525  GFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFR 584
             FDF+DAPS +AI+MAIRNL+QLGA+ L N  ++LTEEG+ LVKLGIEPRLGKLIL+CF 
Sbjct: 654  HFDFVDAPSGQAIDMAIRNLLQLGAVTLTNDFYDLTEEGRCLVKLGIEPRLGKLILNCFH 713

Query: 585  RRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSL 644
             RLGREGLVLAAVMANASSIFCRVG+D++K+K+D LKVQFCHR+GDLFTLLSVY+EW+ L
Sbjct: 714  HRLGREGLVLAAVMANASSIFCRVGNDEDKLKSDRLKVQFCHRDGDLFTLLSVYKEWECL 773

Query: 645  PREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLK 704
            P E+RNKWCWENS+NAKS+RRCQDT+ EL+ CL+ EL IIIP+YW WNPH  T  D++LK
Sbjct: 774  PAEKRNKWCWENSINAKSMRRCQDTVHELDRCLKNELRIIIPTYWRWNPHNPTIQDRYLK 833

Query: 705  EIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQ 764
            ++ILS+L+ENVAM+SGYDQLGYEVA+TGQ+VQLHP+CSLLIFG+KP+WVVFGE+LS++NQ
Sbjct: 834  KVILSSLSENVAMYSGYDQLGYEVALTGQYVQLHPACSLLIFGEKPSWVVFGEILSISNQ 893

Query: 765  YLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKSNSNVLSLV 824
            YLVCVTAFD DSL T+ P PLFDVS ME +KL  R +TGFGS LLKKFCGK+N+N++ L+
Sbjct: 894  YLVCVTAFDIDSLPTIFP-PLFDVSKMESRKLQTRKMTGFGSTLLKKFCGKANNNLIHLI 952

Query: 825  SRLRSTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLY 884
            S++R++ MD RIGIEV VDQN+ILLFASS+D+E+V  LV+DVLEYE+KWL NECIEKCLY
Sbjct: 953  SQIRTSCMDVRIGIEVKVDQNEILLFASSKDMEKVGSLVNDVLEYERKWLQNECIEKCLY 1012

Query: 885  -QGAGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICS 943
             +  GV+P +ALFGAGAEIKHLELE+R L+VDV+ S+AN  DDKELLM+LE++ASGSICS
Sbjct: 1013 HERHGVAPPLALFGAGAEIKHLELEKRCLSVDVFCSDANTTDDKELLMYLEEHASGSICS 1072

Query: 944  IHKF-AVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMY 1002
             HKF   GQDS+E  +WGR+TFLTPD+A KAT+LN VE+ GSLLKV+PSR T GG++KM+
Sbjct: 1073 FHKFTGTGQDSEE--RWGRITFLTPDSAKKATDLNKVEFRGSLLKVIPSRTTFGGNHKMF 1130

Query: 1003 TFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVI 1062
             FPAVKAKVYWPRR SKGF +VKCD  DV+F+V DF +L IGGRY+RCE   + MD+VVI
Sbjct: 1131 PFPAVKAKVYWPRRQSKGFGIVKCDRHDVDFMVNDFSNLLIGGRYLRCEGSAKYMDSVVI 1190

Query: 1063 SGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNS 1122
            SGLDKELSE EIL ELR  T RRI D FLVRGDAV+ P   A EEALLREIS FM K   
Sbjct: 1191 SGLDKELSEAEILDELRTATNRRILDFFLVRGDAVKNPSCGACEEALLREISPFMSKTKP 1250

Query: 1123 HANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLF 1182
            H NCC+ QVFPPEPKD+FMKA ITFDGRLHLEAAKALE++EGKVL GC  WQK+KCQQLF
Sbjct: 1251 HGNCCQAQVFPPEPKDSFMKALITFDGRLHLEAAKALEEIEGKVLSGCLSWQKIKCQQLF 1310

Query: 1183 HSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRR 1242
            HS +SCPA VYSVIK++L SLLA+L    GAEC ++RN NGSYRV+IS+NATKTVA++RR
Sbjct: 1311 HSYVSCPAPVYSVIKKQLVSLLASLKHQKGAECNLDRNENGSYRVKISANATKTVAEMRR 1370

Query: 1243 PVEELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPD 1302
            P+E+LM+G  V+HASLTP +L  LF+RDGI L KSLQ+ET T+ILFDRH++SV++FG  +
Sbjct: 1371 PLEQLMKGEIVDHASLTPAVLHLLFSRDGIMLMKSLQRETETYILFDRHSISVRVFGPSE 1430

Query: 1303 NIAEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFS 1362
             IA A+QKL++SLL  H+SKQLEIHLRGG LP DLMKEVV++FGPDL GLKEKVPGAEF+
Sbjct: 1431 KIAVAKQKLVESLLALHDSKQLEIHLRGGDLPGDLMKEVVKKFGPDLHGLKEKVPGAEFT 1490

Query: 1363 LNTRRHVISVHGDRELKQK 1381
            LNTRRH+I +HG++ELKQK
Sbjct: 1491 LNTRRHIIYIHGNKELKQK 1509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480508\|ref\|XP_003632479.1\| PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224083569\|ref\|XP_002307067.1\| predicted protein [Populus trichocarpa] gi\|222856516\|gb\|EEE94063.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356569232\|ref\|XP_003552808.1\| PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356538140\|ref\|XP_003537562.1\| PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449439023\|ref\|XP_004137287.1\| PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357463271\|ref\|XP_003601917.1\| Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi\|355490965\|gb\|AES72168.1\| Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|5262156\|emb\|CAB45785.1\| putative protein [Arabidopsis thaliana] gi\|7267599\|emb\|CAB80911.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807069\|ref\|XP_002871418.1\| hypothetical protein ARALYDRAFT_487868 [Arabidopsis lyrata subsp. lyrata] gi\|297317255\|gb\|EFH47677.1\| hypothetical protein ARALYDRAFT_487868 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18411509\|ref\|NP_567206.1\| zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] gi\|290463373\|sp\|P0CE10.1\|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gi\|332656567\|gb\|AEE81967.1\| zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1387
TAIR\|locus:2125211		1787	AT4G01020 [Arabidopsis thalian	0.992	0.770	0.597	0.0
TAIR\|locus:2142459		1775	AT5G10370 [Arabidopsis thalian	0.992	0.775	0.593	0.0
TAIR\|locus:2088847		1168	AT3G26560 [Arabidopsis thalian	0.371	0.440	0.378	8.2e-110
UNIPROTKB\|F1P306		1168	LOC100858239 "Uncharacterized	0.366	0.435	0.371	9.8e-106
RGD\|1310723		1210	Dhx8 "DEAH (Asp-Glu-Ala-His) b	0.366	0.420	0.373	7.1e-105
ZFIN\|ZDB-GENE-050809-39		1210	dhx8 "DEAH (Asp-Glu-Ala-His) b	0.366	0.420	0.375	9e-105
UNIPROTKB\|F1S1H3		1212	DHX8 "Uncharacterized protein"	0.366	0.419	0.373	1.6e-104
UNIPROTKB\|E2R9R9		1216	DHX8 "Uncharacterized protein"	0.366	0.418	0.373	4.4e-104
UNIPROTKB\|Q14562		1220	DHX8 "ATP-dependent RNA helica	0.366	0.417	0.373	8.6e-104
UNIPROTKB\|F1MEM4		1230	DHX8 "Uncharacterized protein"	0.366	0.413	0.373	2.5e-103

TAIR\|locus:2125211 AT4G01020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4304 (1520.1 bits), Expect = 0., P = 0.
 Identities = 835/1397 (59%), Positives = 1061/1397 (75%)

Query:     1 MVGLWESRLNGAHCLNLKLIPHVVVPSDADELEERLRNLFVDHVKGLME-GELVNKWLKM 59
             +V LW+ RL G H    +LIP+VVVPSD DEL++RLR+LF  HV  LME G+ V K ++M
Sbjct:   144 VVALWDYRLQGRHDFVPELIPNVVVPSDMDELKDRLRDLFSSHVLSLMENGQGVKK-VRM 202

Query:    60 K-DDKCDEIANVSNRLGSR-----NSYAVFCE--LNERKKGEFKNGMHCVLKYL--DDPQ 109
             + DDK  ++A+ S++ G +        A+  E  L   +  EF N M  +L+YL   D  
Sbjct:   203 EIDDKSRQVASFSSKRGLKFEVFEKKKALEAERDLVVNRLDEFNNAMKSILRYLIGQDGY 262

Query:   110 NVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQ 169
                  +  D +V VF  E    +DW RI   I+REC+RLEDGLPIY YR+ IL++I+ EQ
Sbjct:   263 EFDVDDEDDEDVAVFSLEGA--YDWRRIHYLILRECRRLEDGLPIYAYRRQILKKIHCEQ 320

Query:   170 ILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229
             I+VLIGETG GKSTQLVQFLADSG+AA +SIVCTQPRKIAA++L  RVREES GCYE+++
Sbjct:   321 IMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMTLTDRVREESSGCYEENT 380

Query:   230 VICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSXXXXXXXXXX 289
             V C P+FSS +   SKV+YMTD+CLLQH+M DR LS ISC+I+DEAHERS          
Sbjct:   381 VSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALL 440

Query:   290 XXXXCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAV-- 347
                  RR DLRLVIMSATADA+QLS+Y +DCGI HV GRNFPV++ Y P  T   S V  
Sbjct:   441 RKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGR 500

Query:   348 -ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQ 406
              ASY  DVV+M  E+H TEKEGTILAFLTS+ EVEWACE+F APSA+ALP HG+LSF+EQ
Sbjct:   501 IASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQ 560

Query:   407 FCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQS 466
             F VF++YPGRRKVIFATN+AETSLTIPGVK+VIDSGMVKES +EP TGM++L+VC+VSQS
Sbjct:   561 FMVFQNYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQS 620

Query:   467 SANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGF 526
             SA QRAGRAGRTEPGRCYRLYSK+DF++  LNQEPEI RVHLG+A+LR+LALGI ++  F
Sbjct:   621 SARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGIDNIAAF 680

Query:   527 DFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRR 586
             +F+DAP  +AI MAI+NLVQLGA+   NGV ELT+EG  LVKLG+EP+LGKLIL CFR R
Sbjct:   681 EFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILGCFRHR 740

Query:   587 LGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPR 646
             +G+EG+VLAAVMANASSIFCRVG+ D+K+KAD LKVQFC+ NGDLFTLLSVY+EW SLPR
Sbjct:   741 MGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCNDNGDLFTLLSVYKEWASLPR 800

Query:   647 EERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEI 706
             + RNKWCWENS+NAKS+RRC+DT+KELE C+E+EL ++ PSYW+WNP++ T++DK+LK +
Sbjct:   801 DRRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKYLKMV 860

Query:   707 ILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYL 766
             IL++LAENVAM++GYDQLGYEVA+T Q VQLHPSCSLL FGQKP+WVVFGELLS+ +QYL
Sbjct:   861 ILASLAENVAMYTGYDQLGYEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYL 920

Query:   767 VCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSILLKKFCGKXXXXXXXXXXX 826
             VCVTAFDF++L  L P P FD S M+ ++L V+ + G  S +LK+FCGK           
Sbjct:   921 VCVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRSLLSIVSR 980

Query:   827 XXXTFMDERIGIEVNVDQNQILLFASSQDIEEVLGLVSDVLEYEKKWLHNECIEKCLYQG 886
                   DERIGI+V+VDQN+I L+AS  D+E+V  LV+D LE EKKW+ NEC+EK L+ G
Sbjct:   981 ARSLCSDERIGIQVDVDQNEIRLYASPLDMEKVSALVNDALECEKKWMRNECLEKYLFHG 1040

Query:   887 AGVSPSVALFGAGAEIKHLELERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHK 946
              G  P +ALFG+GA+IKHLE+++RFLTVDV++   +++DD+ELL FLEK   G ICSI+K
Sbjct:  1041 RGQIP-IALFGSGAQIKHLEVDQRFLTVDVHYYGDDVVDDRELLTFLEKKIDGCICSIYK 1099

Query:   947 FAVG-QDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVPSRATLGGDNKMYTFP 1005
             FA   QD DEK+KWGR+TFLTP++A KATE+   ++ GS+LKV PS +T GG  KM  F 
Sbjct:  1100 FAANKQDCDEKEKWGRITFLTPESAMKATEIQKFDFKGSVLKVFPSLSTGGGIFKMPYFS 1159

Query:  1006 AVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGL 1065
             +V AK+ WPR+ S G   +KC + D+  ++ D   L IG  YV  +  + S D+++ISGL
Sbjct:  1160 SVTAKIRWPRKESSGRGCLKCPSGDIHSILGDITSLEIGTNYVHIQRDQLSNDSILISGL 1219

Query:  1066 DKELSEDEILGELRKVTTRRIRDLFLVRGD-AVECPQFDAFEEALLREISRFMPKRNSHA 1124
               +LSE E+L  L   T RR  + F+ R   +V+CP   A EE L + I   M  +N   
Sbjct:  1220 G-DLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPTACEEELHKRIFARMSAKNPEP 1278

Query:  1125 NCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQLFHS 1184
             NC +VQVF P+  + FM+A I FDGRLHLEAAKAL++L G+VLPGC PWQK+KC+QLF S
Sbjct:  1279 NCVQVQVFEPKEDNYFMRALIKFDGRLHLEAAKALQELNGEVLPGCLPWQKIKCEQLFQS 1338

Query:  1185 SLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRISSNATKTVADLRRPV 1244
             S+ C AS+Y+ +K +LN LLA   R  G EC +E  +NG+YRV+I++ AT+ VA++RR +
Sbjct:  1339 SIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNGAYRVKITAYATRPVAEMRREL 1398

Query:  1245 EELMRGRTVNHASLTPTILQHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNI 1304
             EEL+RG+ +NH   TP ++QHL +RDGINL + +QQET T+IL DRH L+V+I G  + I
Sbjct:  1399 EELLRGKPINHPGFTPRVVQHLMSRDGINLMRKIQQETETYILLDRHNLTVRICGTSEKI 1458

Query:  1305 AEAQQKLIQSLLTYHESKQLEIHLRGGVLPPDLMKEVVRRFGPDLQGLKEKVPGAEFSLN 1364
             A+A+Q+L+QSL+ YHESKQLEIHLRG  + PDLMKEVV+RFGP+LQG+KEKV G +  LN
Sbjct:  1459 AKAEQELVQSLMDYHESKQLEIHLRGPEIRPDLMKEVVKRFGPELQGIKEKVHGVDLKLN 1518

Query:  1365 TRRHVISVHGDRELKQK 1381
             TR HVI VHG +E++Q+
Sbjct:  1519 TRYHVIQVHGSKEMRQE 1535

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR\|locus:2142459 AT5G10370 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088847 AT3G26560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P306 LOC100858239 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1310723 Dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050809-39 dhx8 "DEAH (Asp-Glu-Ala-His) box polypeptide 8" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1H3 DHX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R9R9 DHX8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14562 DHX8 "ATP-dependent RNA helicase DHX8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MEM4 DHX8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CE10	Y4102_ARATH	No assigned EC number	0.6105	0.9884	0.7672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1387
COG1643		845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	1e-157
TIGR01967		1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	1e-102
PRK11131		1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	1e-91
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	6e-77
PRK11664		812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	1e-71
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	6e-22
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	3e-19
pfam04408		91	pfam04408, HA2, Helicase associated domain (HA2)	3e-16
pfam07717		109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	2e-12
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	4e-11
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	6e-11
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	5e-10
smart00847		82	smart00847, HA2, Helicase associated domain (HA2)	4e-09
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	2e-05
COG0514		590	COG0514, RecQ, Superfamily II DNA helicase [DNA re	1e-04
COG0513		513	COG0513, SrmB, Superfamily II DNA and RNA helicase	7e-04

>gnl\|CDD\|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  494 bits (1274), Expect = e-157
 Identities = 230/650 (35%), Positives = 326/650 (50%), Gaps = 51/650 (7%)

Query: 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAA 210
           GLP+   R +IL+ I   Q+++++GETG GK+TQL QFL + G+     I CTQPR++AA
Sbjct: 48  GLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAA 107

Query: 211 ISLAQRVREESRGCYEDDSV---ICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRI 267
            S+A+RV EE  G    ++V   I + S  S     +++  MTD  LL+   ND  LS  
Sbjct: 108 RSVAERVAEE-LGEKLGETVGYSIRFESKVSP---RTRIKVMTDGILLREIQNDPLLSGY 163

Query: 268 SCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATADAHQLSKYFYDCGISHVV 326
           S +I+DEAHERSLNTD+LL L+KDLL  RR DL+L+IMSAT DA + S YF +  +  + 
Sbjct: 164 SVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIE 223

Query: 327 GRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACE- 385
           GR +PV++RY+P        +   +   V +    H  E  G+IL FL  + E+E   E 
Sbjct: 224 GRTYPVEIRYLP-EAEADYILLDAIVAAVDI----HLREGSGSILVFLPGQREIERTAEW 278

Query: 386 ---KFDAPSAVALPFHGQLSFDEQFCVFKSYP-GRRKVIFATNVAETSLTIPGVKFVIDS 441
                       LP +G LS +EQ  VF+  P G+RKV+ ATN+AETSLTIPG+++VIDS
Sbjct: 279 LEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDS 338

Query: 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEP 501
           G+ KE  ++P TG+  L    +S++SA+QRAGRAGRT PG CYRLYS+ DF   P    P
Sbjct: 339 GLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLP 398

Query: 502 EIHRVHLGIAVLRILALGIR-DVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELT 560
           EI R  L   VL++ +LGI  D+  F F+D P   AI+ A+  L +LGA+  +    +LT
Sbjct: 399 EILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSG---KLT 455

Query: 561 EEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCL 620
             GK +  L ++PRL +++L+        E   +A+ M +         S D K++    
Sbjct: 456 PLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIAS-MLSEQDRESDF-SRDVKLRKQRT 513

Query: 621 KVQFCHR---------NGDLFTLLSVYREW----DSLPREERNKWCWENSVNAKSLRRCQ 667
                 R          GD   LL  + +      +     R   C       K+L R  
Sbjct: 514 AQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAP 573

Query: 668 DTIKELETCLEKELAIII------PSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGY 721
             I  L          I+         W         Y + + + I  ALA         
Sbjct: 574 WIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALA--AGRKLNI 631

Query: 722 DQLGYEVAMT-----GQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYL 766
            QL  +            V  HPS S+ +      W+ + E L     YL
Sbjct: 632 AQLQLDGRPYVTLSDNTPVFAHPS-SVRLGLVLLEWIKYAEFLRTRKGYL 680

Length = 845

>gnl\|CDD\|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA	Back alignment and domain information

>gnl\|CDD\|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|218070 pfam04408, HA2, Helicase associated domain (HA2)	Back alignment and domain information

>gnl\|CDD\|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl\|CDD\|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1387
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	100.0
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	100.0
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	100.0
PHA02653		675	RNA helicase NPH-II; Provisional	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
PTZ00110		545	helicase; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
PTZ00424		401	helicase 45; Provisional	100.0
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0347		731	consensus RNA helicase [RNA processing and modific	100.0
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
KOG0346		569	consensus RNA helicase [RNA processing and modific	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	100.0
PRK10689		1147	transcription-repair coupling factor; Provisional	100.0
KOG4284		980	consensus DEAD box protein [Transcription]	100.0
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	100.0
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	100.0
KOG0334		997	consensus RNA helicase [RNA processing and modific	100.0
KOG0327		397	consensus Translation initiation factor 4F, helica	100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	99.98
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.97
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.97
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.97
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.97
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.97
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.97
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.97
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.97
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.97
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.96
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.96
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.96
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.95
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.95
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.95
PHA02558		501	uvsW UvsW helicase; Provisional	99.95
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.94
PRK09401		1176	reverse gyrase; Reviewed	99.94
PRK14701		1638	reverse gyrase; Provisional	99.94
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.94
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.94
KOG0354		746	consensus DEAD-box like helicase [General function	99.94
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.94
PRK13766		773	Hef nuclease; Provisional	99.94
COG1205		851	Distinct helicase family with a unique C-terminal	99.92
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.92
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.92
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.92
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.92
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.91
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.9
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.9
PRK05580		679	primosome assembly protein PriA; Validated	99.9
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.9
PRK09694		878	helicase Cas3; Provisional	99.89
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.89
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.89
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.88
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.86
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.86
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.85
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.85
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.85
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.83
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.82
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.82
PRK04914		956	ATP-dependent helicase HepA; Validated	99.79
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.79
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.76
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.69
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.68
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.67
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.66
PF07717		114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.64
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.63
COG4096		875	HsdR Type I site-specific restriction-modification	99.62
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.61
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.61
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.6
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.58
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	99.58
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	99.57
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	99.57
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.55
CHL00122		870	secA preprotein translocase subunit SecA; Validate	99.55
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.54
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	99.5
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.49
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.48
PRK05298		652	excinuclease ABC subunit B; Provisional	99.44
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	99.38
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.37
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.36
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.36
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.36
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.31
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.31
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.3
KOG1123		776	consensus RNA polymerase II transcription initiati	99.26
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	99.24
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	99.23
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	99.19
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.11
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.09
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.09
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.07
PRK14873		665	primosome assembly protein PriA; Provisional	99.07
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	99.07
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	99.0
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.99
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.94
COG4889		1518	Predicted helicase [General function prediction on	98.93
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	98.93
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	98.68
KOG0387		923	consensus Transcription-coupled repair protein CSB	98.68
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	98.66
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.61
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	98.59
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.57
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	98.37
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	98.18
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.03
TIGR01628		562	PABP-1234 polyadenylate binding protein, human typ	98.03
COG0610		962	Type I site-specific restriction-modification syst	98.02
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	97.96
TIGR01661		352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.94
KOG1002		791	consensus Nucleotide excision repair protein RAD16	97.92
TIGR01628		562	PABP-1234 polyadenylate binding protein, human typ	97.78
TIGR01648		578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.77
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	97.64
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.6
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.58
PF13245		76	AAA_19: Part of AAA domain	97.57
PRK12726		407	flagellar biosynthesis regulator FlhF; Provisional	97.57
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	97.53
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	97.52
KOG2340		698	consensus Uncharacterized conserved protein [Funct	97.51
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.49
TIGR01649		481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.44
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	97.43
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	97.42
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.4
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	97.36
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	97.33
KOG1803		649	consensus DNA helicase [Replication, recombination	97.31
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	97.3
PRK10875		615	recD exonuclease V subunit alpha; Provisional	97.21
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	97.16
KOG0117		506	consensus Heterogeneous nuclear ribonucleoprotein	97.14
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	97.14
KOG4439		901	consensus RNA polymerase II transcription terminat	97.13
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.08
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	97.03
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.0
TIGR01622		457	SF-CC1 splicing factor, CC1-like family. A homolog	96.96
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	96.91
PRK15483		986	type III restriction-modification system StyLTI en	96.9
PRK14974		336	cell division protein FtsY; Provisional	96.89
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	96.89
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	96.88
PRK04296		190	thymidine kinase; Provisional	96.75
PRK10536		262	hypothetical protein; Provisional	96.75
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.74
TIGR01659		346	sex-lethal sex-lethal family splicing factor. This	96.74
PRK13889		988	conjugal transfer relaxase TraA; Provisional	96.73
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	96.66
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	96.65
TIGR01649		481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	96.56
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	96.53
smart00382		148	AAA ATPases associated with a variety of cellular	96.49
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	96.43
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	96.39
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	96.39
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	96.36
PRK08181		269	transposase; Validated	96.3
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.27
PRK07952		244	DNA replication protein DnaC; Validated	96.21
PRK06526		254	transposase; Provisional	96.13
PRK13826		1102	Dtr system oriT relaxase; Provisional	96.08
PF05970		364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.06
PRK08727		233	hypothetical protein; Validated	96.04
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.98
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	95.86
TIGR01645		612	half-pint poly-U binding splicing factor, half-pin	95.86
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	95.83
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	95.83
TIGR01661		352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	95.83
PRK10416		318	signal recognition particle-docking protein FtsY;	95.81
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	95.8
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	95.79
PHA03333		752	putative ATPase subunit of terminase; Provisional	95.75
PF05729		166	NACHT: NACHT domain	95.68
PF05127		177	Helicase_RecD: Helicase; InterPro: IPR007807 This	95.66
KOG0123		369	consensus Polyadenylate-binding protein (RRM super	95.65
KOG0145		360	consensus RNA-binding protein ELAV/HU (RRM superfa	95.61
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.6
TIGR01645		612	half-pint poly-U binding splicing factor, half-pin	95.57
TIGR01622		457	SF-CC1 splicing factor, CC1-like family. A homolog	95.56
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	95.54
TIGR00064		272	ftsY signal recognition particle-docking protein F	95.48
PRK09112		351	DNA polymerase III subunit delta'; Validated	95.37
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	95.32
PRK08903		227	DnaA regulatory inactivator Hda; Validated	95.24
TIGR01425		429	SRP54_euk signal recognition particle protein SRP5	95.19
PRK05642		234	DNA replication initiation factor; Validated	95.19
PLN03120		260	nucleic acid binding protein; Provisional	95.17
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.15
PF13173		128	AAA_14: AAA domain	95.15
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	95.14
PRK06835		329	DNA replication protein DnaC; Validated	95.03
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	95.01
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	94.97
PRK06893		229	DNA replication initiation factor; Validated	94.97
KOG1805		1100	consensus DNA replication helicase [Replication, r	94.96
PRK08084		235	DNA replication initiation factor; Provisional	94.92
PRK13763		180	putative RNA-processing protein; Provisional	94.87
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	94.85
PRK12402		337	replication factor C small subunit 2; Reviewed	94.77
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	94.6
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	94.54
PLN03121		243	nucleic acid binding protein; Provisional	94.54
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	94.53
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.5
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	94.49
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	94.43
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	94.42
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	94.41
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	94.39
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	94.36
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	94.33
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	94.33
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	94.3
PRK00771		437	signal recognition particle protein Srp54; Provisi	94.29
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	94.29
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	94.28
COG1444		758	Predicted P-loop ATPase fused to an acetyltransfer	94.12
PRK09183		259	transposase/IS protein; Provisional	94.11
COG3587		985	Restriction endonuclease [Defense mechanisms]	94.1
PRK08116		268	hypothetical protein; Validated	94.05
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.02
PRK11054		684	helD DNA helicase IV; Provisional	93.97
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	93.94
PTZ00293		211	thymidine kinase; Provisional	93.92
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	93.91
PRK10867		433	signal recognition particle protein; Provisional	93.82
CHL00181		287	cbbX CbbX; Provisional	93.82
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	93.76
PRK00149		450	dnaA chromosomal replication initiation protein; R	93.75
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	93.75
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	93.74
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.74
PHA02544		316	44 clamp loader, small subunit; Provisional	93.68
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	93.53
COG1484		254	DnaC DNA replication protein [DNA replication, rec	93.53
PRK00411		394	cdc6 cell division control protein 6; Reviewed	93.52
PRK07471		365	DNA polymerase III subunit delta'; Validated	93.51
cd03115		173	SRP The signal recognition particle (SRP) mediates	93.47
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	93.34
PRK13833		323	conjugal transfer protein TrbB; Provisional	93.28
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	93.26
PRK06921		266	hypothetical protein; Provisional	93.18
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	93.16
PRK14712		1623	conjugal transfer nickase/helicase TraI; Provision	93.13
TIGR00959		428	ffh signal recognition particle protein. This mode	93.12
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	93.12
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	93.08
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.96
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	92.87
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	92.73
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	92.62
cd01122		271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	92.61
PRK08939		306	primosomal protein DnaI; Reviewed	92.57
PLN03025		319	replication factor C subunit; Provisional	92.56
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	92.53
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	92.51
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	92.49
TIGR01547		396	phage_term_2 phage terminase, large subunit, PBSX	92.44
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	92.32
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	92.3
PRK12422		445	chromosomal replication initiation protein; Provis	92.3
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	92.28
PRK13851		344	type IV secretion system protein VirB11; Provision	92.26
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	92.25
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	92.19
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	92.18
PRK13709		1747	conjugal transfer nickase/helicase TraI; Provision	92.16
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	92.15
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	92.11
PRK12377		248	putative replication protein; Provisional	92.1
PF00004		132	AAA: ATPase family associated with various cellula	92.06
PTZ00112		1164	origin recognition complex 1 protein; Provisional	91.94
PHA02533		534	17 large terminase protein; Provisional	91.86
PF01443		234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	91.86
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	91.82
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	91.81
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	91.75
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	91.74
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	91.7
PRK14087		450	dnaA chromosomal replication initiation protein; P	91.66
PF14259		70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	91.64
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	91.62
TIGR01659		346	sex-lethal sex-lethal family splicing factor. This	91.55
cd03246		173	ABCC_Protease_Secretion This family represents the	91.43
KOG1131		755	consensus RNA polymerase II transcription initiati	91.42
PRK07940		394	DNA polymerase III subunit delta'; Validated	91.39
PF00076		70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	91.32
PHA03368		738	DNA packaging terminase subunit 1; Provisional	91.31
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	91.3
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	91.22
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	91.19
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	91.15
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	91.14
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	91.11
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	91.1
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	91.08
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	91.03
KOG0148		321	consensus Apoptosis-promoting RNA-binding protein	91.03
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	90.96
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	90.95
COG2256		436	MGS1 ATPase related to the helicase subunit of the	90.92
PF00076		70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	90.9
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	90.87
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	90.86
PRK10865		857	protein disaggregation chaperone; Provisional	90.81
PRK14088		440	dnaA chromosomal replication initiation protein; P	90.77
COG4962		355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	90.77
PRK07399		314	DNA polymerase III subunit delta'; Validated	90.68
PRK04195		482	replication factor C large subunit; Provisional	90.67
PRK00440		319	rfc replication factor C small subunit; Reviewed	90.66
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	90.6
KOG4207		256	consensus Predicted splicing factor, SR protein su	90.54
cd03216		163	ABC_Carb_Monos_I This family represents the domain	90.42
PF13555		62	AAA_29: P-loop containing region of AAA domain	90.35
COG1435		201	Tdk Thymidine kinase [Nucleotide transport and met	90.04
PF13893		56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	90.02
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	89.96
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	89.95
PRK13342		413	recombination factor protein RarA; Reviewed	89.86
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	89.83
PRK14086		617	dnaA chromosomal replication initiation protein; P	89.8
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	89.75
PRK08769		319	DNA polymerase III subunit delta'; Validated	89.71
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	89.65
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	89.64
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	89.54
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	89.52
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	89.48
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	89.44
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	89.43
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	89.09
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	89.09
PRK11823		446	DNA repair protein RadA; Provisional	89.04
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	88.98
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	88.95
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	88.88
PRK06620		214	hypothetical protein; Validated	88.85
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	88.79
PRK05707		328	DNA polymerase III subunit delta'; Validated	88.74
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	88.72
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	88.67
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	88.62
PRK09087		226	hypothetical protein; Validated	88.59
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	88.58
COG0552		340	FtsY Signal recognition particle GTPase [Intracell	88.58
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	88.55
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	88.53
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	88.38
PRK10436		462	hypothetical protein; Provisional	88.37
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	88.32
PRK08533		230	flagellar accessory protein FlaH; Reviewed	88.31
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	88.26
PRK13341		725	recombination factor protein RarA/unknown domain f	88.24
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	88.23
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	88.14
PRK06067		234	flagellar accessory protein FlaH; Validated	88.13
PRK06871		325	DNA polymerase III subunit delta'; Validated	88.1
PRK06964		342	DNA polymerase III subunit delta'; Validated	88.03
KOG2028		554	consensus ATPase related to the helicase subunit o	87.89
PRK07993		334	DNA polymerase III subunit delta'; Validated	87.85
cd00590		74	RRM RRM (RNA recognition motif), also known as RBD	87.78
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	87.74
TIGR01648		578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	87.55
CHL00095		821	clpC Clp protease ATP binding subunit	87.47
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	87.27
COG3972		660	Superfamily I DNA and RNA helicases [General funct	87.19
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	87.13
COG0541		451	Ffh Signal recognition particle GTPase [Intracellu	87.1
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	87.05
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	87.0
PHA02244		383	ATPase-like protein	86.88
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	86.85
COG5008		375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	86.84
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	86.71
cd03239		178	ABC_SMC_head The structural maintenance of chromos	86.62
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	86.56
KOG0733		802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	86.51
PF14259		70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	86.5
COG3973		747	Superfamily I DNA and RNA helicases [General funct	86.5
cd03215		182	ABC_Carb_Monos_II This family represents domain II	86.49
cd01393		226	recA_like RecA is a bacterial enzyme which has rol	86.36
PF03354		477	Terminase_1: Phage Terminase ; InterPro: IPR005021	86.24
PLN03134		144	glycine-rich RNA-binding protein 4; Provisional	86.17
PRK08058		329	DNA polymerase III subunit delta'; Validated	85.82
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	85.79
PRK03992		389	proteasome-activating nucleotidase; Provisional	85.76
TIGR02785		1232	addA_Gpos recombination helicase AddA, Firmicutes	85.73
smart00362		72	RRM_2 RNA recognition motif.	85.73
PRK04841		903	transcriptional regulator MalT; Provisional	85.7
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	85.69
KOG0122		270	consensus Translation initiation factor 3, subunit	85.59
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	85.57
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	85.53
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	85.36
PF12846		304	AAA_10: AAA-like domain	85.3
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	85.25
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	85.01
KOG0148		321	consensus Apoptosis-promoting RNA-binding protein	85.0
PRK05564		313	DNA polymerase III subunit delta'; Validated	84.94
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	84.88
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	84.51
COG0593		408	DnaA ATPase involved in DNA replication initiation	84.37
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	84.36
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	84.33
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	84.31
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	84.19
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	84.17
KOG2228		408	consensus Origin recognition complex, subunit 4 [R	83.95
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	83.91
KOG0123		369	consensus Polyadenylate-binding protein (RRM super	83.88
COG0630		312	VirB11 Type IV secretory pathway, VirB11 component	83.85
cd00984		242	DnaB_C DnaB helicase C terminal domain. The hexame	83.84
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	83.8
PRK06090		319	DNA polymerase III subunit delta'; Validated	83.8
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	83.65
PRK05973		237	replicative DNA helicase; Provisional	83.64
smart00361		70	RRM_1 RNA recognition motif.	83.59
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	83.49
CHL00176		638	ftsH cell division protein; Validated	83.48
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	83.41
PRK08699		325	DNA polymerase III subunit delta'; Validated	83.3
PRK05580		679	primosome assembly protein PriA; Validated	83.21
PHA00350		399	putative assembly protein	83.16
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	83.14
PF02367		123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	82.92
PRK05986		191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	82.88
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	82.85
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	82.82
TIGR02533		486	type_II_gspE general secretory pathway protein E.	82.74
TIGR03819		340	heli_sec_ATPase helicase/secretion neighborhood AT	82.72
PF03237		384	Terminase_6: Terminase-like family; InterPro: IPR0	82.72
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	82.7
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	82.65
PRK13763		180	putative RNA-processing protein; Provisional	82.62
PRK06904		472	replicative DNA helicase; Validated	82.43
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	82.37
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	82.23
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	82.21
PF13481		193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	81.92
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	81.85
TIGR00150		133	HI0065_YjeE ATPase, YjeE family. Members of this f	81.71

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=9.1e-127  Score=1121.51  Aligned_cols=616  Identities=44%  Similarity=0.712  Sum_probs=576.3

Q ss_pred             HHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcC
Q 000621          144 ECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRG  223 (1387)
Q Consensus       144 ~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~  223 (1387)
                      .+...+..||++.++.+|+..+++++++||.|+||||||||+||+|++.++...++|.||||||++|+++|+||++++ +
T Consensus        42 ~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~-~  120 (674)
T KOG0922|consen   42 SIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEM-G  120 (674)
T ss_pred             CHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHh-C
Confidence            345566899999999999999999999999999999999999999999999998999999999999999999999998 4


Q ss_pred             CCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621          224 CYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI  303 (1387)
Q Consensus       224 ~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl  303 (1387)
                      +..|..|||..+|++..+..|+|.|+|+|+|+|++..|+.|++|++|||||||||++.+|++++++|.+...|+++|+|+
T Consensus       121 ~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIi  200 (674)
T KOG0922|consen  121 CQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLII  200 (674)
T ss_pred             CCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHH
Q 000621          304 MSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWA  383 (1387)
Q Consensus       304 mSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l  383 (1387)
                      ||||+|++.|++||.+++++.++||+|||+++|.+.+.      .+|+++.+..+.+||.++++|+||||++|++||+.+
T Consensus       201 mSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~------~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~  274 (674)
T KOG0922|consen  201 MSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT------ADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA  274 (674)
T ss_pred             EeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCc------hhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999999999765      899999999999999999999999999999999999


Q ss_pred             HHHhcCC--------CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCC
Q 000621          384 CEKFDAP--------SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTG  454 (1387)
Q Consensus       384 ~~~L~~~--------~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~  454 (1387)
                      ++.|.+.        ...++|+||.||.++|.++|+.. +|.||||+||||||++||||+|.||||+|+.|...|||.+|
T Consensus       275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g  354 (674)
T KOG0922|consen  275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG  354 (674)
T ss_pred             HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence            9999752        12478999999999999999998 69999999999999999999999999999999999999999


Q ss_pred             cccceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcH
Q 000621          455 MNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSA  534 (1387)
Q Consensus       455 ~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~  534 (1387)
                      ++.|.+.|||++++.||+|||||++||+|||||++++|+.|++.+.|||+|++|..++|+||++|++|+..|+|+|||++
T Consensus       355 ~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~  434 (674)
T KOG0922|consen  355 LDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPP  434 (674)
T ss_pred             ccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCceeccCCccccCH-HHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchh
Q 000621          535 KAIEMAIRNLVQLGAIKLNNGVFELTE-EGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDE  613 (1387)
Q Consensus       535 ~~l~~al~~L~~lgal~~~~~~~~lT~-lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~  613 (1387)
                      +++..|++.|+.+||||.+|   .||. +|+.|+.+|++|.++|+|+.|..+||.+|+++|||+|+ .+++|+++.....
T Consensus       435 ~~l~~AL~~L~~lgald~~g---~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Ls-v~~~f~~p~~~~~  510 (674)
T KOG0922|consen  435 EALEEALEELYSLGALDDRG---KLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLS-VQSVFSRPKDKKA  510 (674)
T ss_pred             HHHHHHHHHHHhcCcccCcC---CcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeee-ccceecCccchhh
Confidence            99999999999999999766   6887 99999999999999999999999999999999999996 7889988765433


Q ss_pred             hhHHHHhhhhhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccCCC
Q 000621          614 KIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNP  693 (1387)
Q Consensus       614 ~~~~~~~~~~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~~~  693 (1387)
                      . +++..+.+|.+++|||+|+|++|+.|..  ++.+++||++||||+++|+++.++|+||.+++ +.+++...+.     
T Consensus       511 ~-~a~~~~~kf~~~eGDh~tlL~vy~~~~~--~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~-~~~~~~~~s~-----  581 (674)
T KOG0922|consen  511 E-DADRKRAKFANPEGDHLTLLNVYESWKE--NGTSKKWCKENFINARSLKRAKDIRKQLRRIL-DKFGLPVSSC-----  581 (674)
T ss_pred             h-hhhHHHHhhcCcccCHHHHHHHHHHHHh--cCChhhHHHHhcccHHHHHHHHHHHHHHHHHH-HHcCCCccCC-----
Confidence            3 5889999999999999999999999988  77889999999999999999999999999998 5566544221     


Q ss_pred             CCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeeeecccC
Q 000621          694 HKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFD  773 (1387)
Q Consensus       694 ~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~vt~I~  773 (1387)
                         ..+.+.+++|||+|||.|+|+++..+  ||+++.+|+.|+|||||+|  |..+|+||+|+|++.|+|.|||+||+|+
T Consensus       582 ---~~d~~~i~k~l~aGff~N~A~~~~~~--~Yrti~~~~~v~IHPSS~l--~~~~p~~viy~el~~Ttk~Y~r~Vt~i~  654 (674)
T KOG0922|consen  582 ---GGDMEKIRKCLCAGFFRNVAERDYQD--GYRTIRGGQPVYIHPSSVL--FRRKPEWVIYHELLQTTKEYMRNVTAID  654 (674)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHhhcCC--CeEEccCCcEEEEechHHh--hcCCCCEEEEEEEeecchHhHhheeecC
Confidence               12346899999999999999997332  5999999999999999999  7778999999999999999999999999


Q ss_pred             hhhHhhhCCCCccc
Q 000621          774 FDSLSTLCPSPLFD  787 (1387)
Q Consensus       774 ~~wl~~~~~~~~~~  787 (1387)
                      ++||.+++| ++|.
T Consensus       655 ~~wL~e~ap-~~~~  667 (674)
T KOG0922|consen  655 PEWLLELAP-HFFK  667 (674)
T ss_pred             HHHHHHhCc-hHhh
Confidence            999999999 5553

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family	Back alignment and domain information

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG2340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>TIGR01622 SF-CC1 splicing factor, CC1-like family	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>TIGR01659 sex-lethal sex-lethal family splicing factor	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK13826 Dtr system oriT relaxase; Provisional	Back alignment and domain information

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase	Back alignment and domain information

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family	Back alignment and domain information

>TIGR01622 SF-CC1 splicing factor, CC1-like family	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>TIGR01425 SRP54_euk signal recognition particle protein SRP54	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>PLN03120 nucleic acid binding protein; Provisional	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PLN03121 nucleic acid binding protein; Provisional	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PTZ00293 thymidine kinase; Provisional	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>TIGR00959 ffh signal recognition particle protein	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF14259 RRM_6: RNA recognition motif (a	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>TIGR01659 sex-lethal sex-lethal family splicing factor	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00076 RRM_1: RNA recognition motif	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00076 RRM_1: RNA recognition motif	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF13893 RRM_5: RNA recognition motif	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>PRK11823 DNA repair protein RadA; Provisional	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14259 RRM_6: RNA recognition motif (a	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response	Back alignment and domain information

>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase)	Back alignment and domain information

>PLN03134 glycine-rich RNA-binding protein 4; Provisional	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type	Back alignment and domain information

>smart00362 RRM_2 RNA recognition motif	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>PF12846 AAA_10: AAA-like domain	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>cd00984 DnaB_C DnaB helicase C terminal domain	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>PRK05973 replicative DNA helicase; Provisional	Back alignment and domain information

>smart00361 RRM_1 RNA recognition motif	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PHA00350 putative assembly protein	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop	Back alignment and domain information

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase	Back alignment and domain information

>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>PRK06904 replicative DNA helicase; Validated	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>TIGR00150 HI0065_YjeE ATPase, YjeE family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1387
3kx2_B		767	Crystal Structure Of Prp43p In Complex With Adp Len		3e-92
2xau_A		773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		3e-92
3i4u_A		270	Crystal Structure Analysis Of A Helicase Associated		4e-18
3llm_A		235	Crystal Structure Analysis Of A Rna Helicase Length		2e-16

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Back alignment and structure

Iteration: 1

Score = 337 bits (864), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 353/698 (50%), Gaps = 56/698 (8%) Query: 127 EDCQRFDWSRIQAFIVRECK-------RLEDGLPIYMYRQDILRRIYGEQILVLIGETGC 179 E+ Q+ + +I F RE ++ LP++ R + L+ QI+V +GETG Sbjct: 61 EEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGS 120 Query: 180 GKSTQLVQF-LADSGIAAEQS-IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS 237 GK+TQ+ QF L D E + + CTQPR++AA+S+AQRV EE + V F Sbjct: 121 GKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEM-DVKLGEEVGYSIRFE 179 Query: 238 SAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSXXXXXXXXXXXXXXCRRF 297 + + + YMTD LL+ M D DLSR SCII+DEAHER+ RR Sbjct: 180 NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP 239 Query: 298 DLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRM 357 DL+++IMSAT DA + +YF D + V GR +PV++ Y P Y+ +R Sbjct: 240 DLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTP------EFQRDYLDSAIRT 293 Query: 358 VGEVHTTEKEGTILAFLTSKMEVEWACEKFD------------APSAVALPFHGQLSFDE 405 V ++H TE+ G IL FLT + E+E A K P +V P +G L + Sbjct: 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSV-YPLYGSLPPHQ 352 Query: 406 QFCVFKSYP----GR--RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLR 459 Q +F+ P GR RKV+ +TN+AETSLTI G+ +V+D G K+ + P + L Sbjct: 353 QQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLL 412 Query: 460 VCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQE-PEIHRVHLGIAVLRILAL 518 V +S++SA QRAGRAGRT PG+C+RLY++ F+ + Q PEI R +L VL + L Sbjct: 413 VSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKL 472 Query: 519 GIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKL 578 GI D+ FDF+D P A E +R L +L + + LT G+ + ++P L + Sbjct: 473 GIDDLVHFDFMDPP---APETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVM 529 Query: 579 ILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVY 638 ++ F + +E L + A M + ++F R D K +AD K F H +GD TLL+VY Sbjct: 530 LIGSFEFQCSQEILTIVA-MLSVPNVFIRPTKD--KKRADDAKNIFAHPDGDHITLLNVY 586 Query: 639 REWDSLPREER--NKWCWENSVNAKSLRRCQDTIKELETCLEK-ELAIIIPSYWLWNPHK 695 + S E +KWC ++ +N +SL + +LE + + L + Y K Sbjct: 587 HAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDY---ESPK 643 Query: 696 YTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVF 755 Y +D K + + SG GY Q V +HPS + G WV++ Sbjct: 644 Y--FDNIRKALASGFFMQVAKKRSGAK--GYITVKDNQDVLIHPST---VLGHDAEWVIY 696 Query: 756 GELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMER 793 E + + Y+ VT+ + L + P+ +D+S ++ Sbjct: 697 NEFVLTSKNYIRTVTSVRPEWLIEIAPA-YYDLSNFQK 733

PyMOL of 3kx2

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Back alignment and structure

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Back alignment and structure

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1387
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	0.0
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	2e-86
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	2e-81
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	7e-81
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	3e-75
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	2e-73
1yks_A		440	Genome polyprotein [contains: flavivirin protease	2e-72
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	5e-67
3llm_A		235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-64
3i4u_A		270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	8e-42
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1wp9_A		494	ATP-dependent RNA helicase, putative; ATPase, DNA	5e-04

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773	Back alignment and structure

 Score =  575 bits (1484), Expect = 0.0
 Identities = 222/677 (32%), Positives = 347/677 (51%), Gaps = 54/677 (7%)

Query: 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLA--DSGIAAEQSIVCTQPRKIA 209
           LP++  R + L+     QI+V +GETG GK+TQ+ QF+   +        + CTQPR++A
Sbjct: 93  LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVA 152

Query: 210 AISLAQRVREESRGCYEDDSV---ICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSR 266
           A+S+AQRV EE       + V   I    F +     + + YMTD  LL+  M D DLSR
Sbjct: 153 AMSVAQRVAEE-MDVKLGEEVGYSI---RFENKTSNKTILKYMTDGMLLREAMEDHDLSR 208

Query: 267 ISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVV 326
            SCII+DEAHER+L TD+L+ L+K ++ RR DL+++IMSAT DA +  +YF D  +  V 
Sbjct: 209 YSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVP 268

Query: 327 GRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACE- 385
           GR +PV++ Y P           Y+   +R V ++H TE+ G IL FLT + E+E A   
Sbjct: 269 GRTYPVELYYTP------EFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRK 322

Query: 386 ----------KFDAPSAVALPFHGQLSFDEQFCVFKSYP------GRRKVIFATNVAETS 429
                     +         P +G L   +Q  +F+  P        RKV+ +TN+AETS
Sbjct: 323 ISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETS 382

Query: 430 LTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSK 489
           LTI G+ +V+D G  K+  + P   +  L V  +S++SA QRAGRAGRT PG+C+RLY++
Sbjct: 383 LTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442

Query: 490 SDFETR-PLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLG 548
             F+        PEI R +L   VL +  LGI D+  FDF+D P+ + +  A+  L  L 
Sbjct: 443 EAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLA 502

Query: 549 AIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRV 608
            +  + G   LT  G+   +  ++P L  +++  F  +  +E L + A M +  ++F R 
Sbjct: 503 CLD-DEG--NLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVA-MLSVPNVFIR- 557

Query: 609 GSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDS--LPREERNKWCWENSVNAKSLRRC 666
               +K +AD  K  F H +GD  TLL+VY  + S        +KWC ++ +N +SL   
Sbjct: 558 -PTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616

Query: 667 QDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGY 726
            +   +LE  + +   + + +    +P  +      +++ + S     VA        GY
Sbjct: 617 DNIRSQLERLMNR-YNLELNTTDYESPKYFDN----IRKALASGFFMQVAKKR-SGAKGY 670

Query: 727 EVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLF 786
                 Q V +HPS  L   G    WV++ E +  +  Y+  VT+   + L  + P+  +
Sbjct: 671 ITVKDNQDVLIHPSTVL---GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPA-YY 726

Query: 787 DVS---MMERKKLHVRV 800
           D+S     + K    R+
Sbjct: 727 DLSNFQKGDVKLSLERI 743

PyMOL of 2xau

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235	Back alignment and structure

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1387
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	3e-45
d1yksa2		299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	3e-35
d1a1va1		136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	7e-26
d1yksa1		140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	1e-13
d1wp9a2		286	c.37.1.19 (A:201-486) putative ATP-dependent RNA h	2e-05
d1gkub1		237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	3e-04
d1a1va2		299	c.37.1.14 (A:326-624) HCV helicase domain {Human h	0.002
d2a5ja1		173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	0.003

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

 Score =  163 bits (414), Expect = 3e-45
 Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 40/339 (11%)

Query: 158 RQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRV 217
             DI R+   +++ ++    G GK+ + +  +    I      +   P ++ A  + + +
Sbjct: 2   EDDIFRK---KRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEAL 58

Query: 218 REESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHE 277
           R               P+  +       V  M         ++   +   + II+DEAH 
Sbjct: 59  RGLPI-------RYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHF 111

Query: 278 RSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYV 337
               +      +   +        + M+AT    +                  P      
Sbjct: 112 TDPASIAARGYISTRVEMGE-AAGIFMTATPPGSR-----------------DPFPQSNA 153

Query: 338 PCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPF 397
           P            + +     G    T+ +G  + F+ S                  +  
Sbjct: 154 PIMD-----EEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQL 208

Query: 398 HGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKE--SYFEPGTGM 455
             +    E     K+       +  T+++E        + VID     +     +    +
Sbjct: 209 SRKTFDSEY---IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERV 264

Query: 456 NVLRVCRVSQSSANQRAGRAGRTEPGRCYR-LYSKSDFE 493
            +     V+ SSA QR GR GR       + +Y     E
Sbjct: 265 ILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLE 303

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299	Back information, alignment and structure

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1387
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	100.0
d1yksa2		299	YFV helicase domain {Yellow fever virus [TaxId: 11	99.97
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.96
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.96
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.96
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.96
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.96
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.95
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.94
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.94
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.93
d1oywa3		200	RecQ helicase domain {Escherichia coli [TaxId: 562	99.89
d2rb4a1		168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.89
d1fuka_		162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.89
d2j0sa2		168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.89
d1s2ma2		171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.88
d1c4oa2		174	Nucleotide excision repair enzyme UvrB {Thermus th	99.88
d1t5la2		181	Nucleotide excision repair enzyme UvrB {Bacillus c	99.88
d1hv8a2		155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.87
d1t5ia_		168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.87
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.86
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	99.83
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.81
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.79
d1jr6a_		138	HCV helicase domain {Human hepatitis C virus (HCV)	99.77
d2p6ra4		201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.76
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.74
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	99.72
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.71
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	99.69
d1a1va2		299	HCV helicase domain {Human hepatitis C virus (HCV)	99.68
d1gm5a4		206	RecG helicase domain {Thermotoga maritima [TaxId:	99.66
d2eyqa5		211	Transcription-repair coupling factor, TRCF {Escher	99.66
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.58
d1gkub2		248	Helicase-like "domain" of reverse gyrase {Archaeon	99.58
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	99.57
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.55
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.53
d1tf5a4		175	Translocation ATPase SecA, nucleotide-binding doma	99.16
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.08
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.98
d1nkta3		288	Translocation ATPase SecA, nucleotide-binding doma	98.89
d1nkta4		219	Translocation ATPase SecA, nucleotide-binding doma	98.84
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	98.65
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.5
d1tf5a3		273	Translocation ATPase SecA, nucleotide-binding doma	98.49
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.46
d2qy9a2		211	GTPase domain of the signal recognition particle r	98.0
d1okkd2		207	GTPase domain of the signal recognition particle r	97.93
d1vmaa2		213	GTPase domain of the signal recognition particle r	97.9
d1ls1a2		207	GTPase domain of the signal sequence recognition p	97.69
d1j8yf2		211	GTPase domain of the signal sequence recognition p	97.35
d1uaaa1		306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.08
d1pjra1		318	DEXX box DNA helicase {Bacillus stearothermophilus	97.06
g1qhh.1		623	DEXX box DNA helicase {Bacillus stearothermophilus	97.04
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	96.5
d1x4aa1		95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	96.27
d2ghpa2		75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.11
d2cpia1		89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	96.07
d1t5la1		413	Nucleotide excision repair enzyme UvrB {Bacillus c	96.07
d1u1qa_		183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.05
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	96.03
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	95.98
d1g6oa_		323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.9
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	95.82
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	95.82
d1wwha1		81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	95.73
d2adca1		109	Polypyrimidine tract-binding protein {Human (Homo	95.73
d2b8ta1		139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.7
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	95.7
d2ghpa3		86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	95.61
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	95.56
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	95.54
d2bz2a1		79	Negative elongation factor E, NELF-E {Human (Homo	95.39
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	95.25
d1x4fa1		99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	95.22
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	95.17
d1whxa_		111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.14
d1u6fa1		139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	94.96
d1wg5a_		104	Heterogeneous nuclear ribonucleoprotein H' {Human	94.94
d2cqpa1		86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	94.93
d2cpja1		86	Non-POU domain-containing octamer-binding protein,	94.91
d1x5oa1		101	RNA-binding motif, single-stranded-interacting pro	94.66
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	94.64
d2ghpa1		81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.61
d1no8a_		78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	94.56
d1u1qa_		183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	94.56
d1x5sa1		90	Cold-inducible RNA-binding protein {Human (Homo sa	94.53
d1no8a_		78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	94.49
d1b7fa1		82	Sex-lethal protein {Drosophila melanogaster [TaxId	94.47
d1x4da1		89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	94.41
d1wi8a_		104	Eukaryotic translation initiation factor 4B {Human	94.4
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	94.4
d1weya_		104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	94.38
d1wf2a_		98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	94.37
d2f9da1		114	Pre-mRNA branch site protein p14 {Human (Homo sapi	94.37
d2cpha1		94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	94.33
d1x5sa1		90	Cold-inducible RNA-binding protein {Human (Homo sa	94.33
d1whxa_		111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	94.29
d1xx6a1		141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.28
d2ghpa1		81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.23
d1whwa_		99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	94.22
d2cpya1		103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.22
d1h2vz_		93	CBP20, 20KDa nuclear cap-binding protein {Human (H	94.2
d1rk8a_		88	RNA-binding protein 8 {Fruit fly (Drosophila melan	94.15
d1zh5a2		85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	94.13
d1wela1		112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.12
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	94.07
d1u6fa1		139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	94.03
d1whwa_		99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	93.97
d1fxla1		82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	93.97
d1weza_		102	Heterogeneous nuclear ribonucleoprotein H' {Human	93.91
d1w36b1		485	Exodeoxyribonuclease V beta chain (RecB), N-termin	93.9
d2cq0a1		90	Eukaryotic translation initiation factor 3 subunit	93.9
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.9
d1wg4a_		98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	93.89
d2cq3a1		93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	93.78
d1cvja2		89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	93.71
d2cpza1		102	CUG triplet repeat RNA-binding protein 1 {Human (H	93.67
d1wg4a_		98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	93.54
d2cq3a1		93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	93.5
d2cqca1		83	Arginine/serine-rich splicing factor 10 {Human (Ho	93.43
d1x5ua1		93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	93.22
d2cpha1		94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	93.18
d1b7fa1		82	Sex-lethal protein {Drosophila melanogaster [TaxId	93.14
d2cpza1		102	CUG triplet repeat RNA-binding protein 1 {Human (H	93.09
d2cpea1		101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	93.03
d1wg1a_		88	Probable RNA-binding protein KIAA1579 {Human (Homo	92.91
d2cqba1		89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	92.76
d2cqpa1		86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	92.75
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	92.74
d1x4ga1		96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	92.74
d1cvja1		80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	92.71
d2cpxa1		102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	92.7
d3begb1		87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	92.67
d1p1ta_		104	Cleavage stimulation factor, 64 kda subunit {Human	92.64
d2cpia1		89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	92.52
d1x4aa1		95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	92.44
d1fjeb1		91	Nucleolin {Golden hamster (Mesocricetus auratus) [	92.42
d2cq4a1		101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	92.4
d1rk8a_		88	RNA-binding protein 8 {Fruit fly (Drosophila melan	92.31
d2cq0a1		90	Eukaryotic translation initiation factor 3 subunit	92.18
d1wg1a_		88	Probable RNA-binding protein KIAA1579 {Human (Homo	92.14
d1cvja1		80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	91.99
d1cr2a_		277	Gene 4 protein (g4p, DNA primase), helicase domain	91.96
d2cpja1		86	Non-POU domain-containing octamer-binding protein,	91.89
d2cqha1		80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	91.79
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	91.76
d3begb1		87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	91.6
d1xbta1		133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.57
d2cqia1		90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	91.55
d1weza_		102	Heterogeneous nuclear ribonucleoprotein H' {Human	91.49
d1p1ta_		104	Cleavage stimulation factor, 64 kda subunit {Human	91.39
d1fjca_		96	Nucleolin {Golden hamster (Mesocricetus auratus) [	91.25
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	90.99
d1cvja2		89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	90.91
d1x5ta1		83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	90.87
d2msta_		75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	90.86
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	90.74
d1e9ra_		433	Bacterial conjugative coupling protein TrwB {Esche	90.74
d2cq4a1		101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	90.68
d1fxla1		82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	90.67
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	90.64
d1wf0a_		88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	90.52
d1l3ka1		84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	90.48
d1h2vz_		93	CBP20, 20KDa nuclear cap-binding protein {Human (H	90.48
d2cqca1		83	Arginine/serine-rich splicing factor 10 {Human (Ho	90.2
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	90.16
d2cqba1		89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	90.15
d2cqha1		80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	90.0
d1whya_		97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	89.98
d1l3ka2		79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	89.9
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	89.82
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.7
d1c4oa1		408	Nucleotide excision repair enzyme UvrB {Thermus th	89.56
d1x5ua1		93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	89.55
d1x4ea1		72	RNA-binding motif, single-stranded-interacting pro	89.54
d1x4ea1		72	RNA-binding motif, single-stranded-interacting pro	89.52
d2msta_		75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	89.39
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.35
d2cpea1		101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	89.3
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	89.21
d2p6ra1		85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.19
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	89.12
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	89.11
d1nu4a_		91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	89.07
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	89.06
d2cqia1		90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	89.06
d2ghpa2		75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	89.03
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	88.99
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	88.9
d1nu4a_		91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	88.9
d1x5ta1		83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	88.89
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	88.76
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	88.67
d1d0xa2		712	Myosin S1, motor domain {Dictyostelium discoideum	88.59
d2cqda1		103	RNA-binding region containing protein 1 {Human (Ho	88.46
d1lkxa_		684	Myosin S1, motor domain {Dictyostelium discoideum,	88.26
d1x4ga1		96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	88.24
d1g2912		240	Maltose transport protein MalK, N-terminal domain	88.13
d2awna2		232	Maltose transport protein MalK, N-terminal domain	88.07
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	87.95
d2cpfa1		85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	87.86
d1x5oa1		101	RNA-binding motif, single-stranded-interacting pro	87.83
d1tf7a2		242	Circadian clock protein KaiC {Synechococcus sp. st	87.65
d1x4ha1		98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	87.59
d1x4ba1		103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	87.27
d1uawa_		77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	87.23
d1fxla2		85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	87.23
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	87.22
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	87.16
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.12
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	87.09
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	87.04
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	86.88
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	86.83
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	86.83
d2cpda1		86	APOBEC1 stimulating protein {Human (Homo sapiens)	86.79
d1kk8a2		789	Myosin S1, motor domain {Bay scallop (Aequipecten	86.67
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	86.66
d2cq2a1		101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	86.6
d1tf7a1		242	Circadian clock protein KaiC {Synechococcus sp. st	86.57
d1pzna2		254	DNA repair protein Rad51, catalytic domain {Archae	86.56
d1w7ja2		730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.5
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	86.5
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	86.18
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	86.12
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	85.97
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	85.97
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	85.94
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	85.84
d2cpqa1		78	Fragile X mental retardation syndrome related prot	85.72
d1uj2a_		213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	85.59
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	85.58
d1n0wa_		242	DNA repair protein Rad51, catalytic domain {Human	85.54
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	85.49
d1u2fa_		90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	85.28
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	85.13
d1wi6a1		75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	84.97
d2adba1		108	Polypyrimidine tract-binding protein {Human (Homo	84.94
d1oxxk2		242	Glucose transport protein GlcV, N-terminal domain	84.85
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	84.7
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	84.36
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	84.13
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	84.06
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	83.91
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	83.9
d2adca2		88	Polypyrimidine tract-binding protein {Human (Homo	83.85
d1wexa_		104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	83.84
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_		104	U2	83.84
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	83.74
d2u2fa_		85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	83.72
d2onka1		240	Molybdate/tungstate import ATP-binding protein Wtp	83.66
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	83.51
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	83.5
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	83.42
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	83.39
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	83.32
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	83.29
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	83.24
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	83.12
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	82.91
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	82.86
d2b0ga1		83	Splicesomal U1A protein {Drosophila melanogaster [	82.77
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	82.76
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	82.71
d1br2a2		710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.34
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	82.25
d2cq1a1		88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	81.69
d1yj5a2		172	5' polynucleotide kinase-3' phosphatase, C-termina	81.52
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	81.38
d1b7fa2		85	Sex-lethal protein {Drosophila melanogaster [TaxId	81.35
d1szpa2		251	DNA repair protein Rad51, catalytic domain {Baker'	81.32
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	81.31
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	81.26
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	81.15
d1hd0a_		75	Heterogeneous nuclear ribonucleoprotein d0 {Human	81.01
d1v5wa_		258	Meiotic recombination protein DMC1/LIM15 homolog {	80.95
d2i1qa2		258	DNA repair protein Rad51, catalytic domain {Archae	80.67
d1u2fa_		90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	80.6
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	80.57
d1x0fa1		75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	80.1

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=1.9e-40  Score=278.69  Aligned_cols=294  Identities=15%  Similarity=0.124  Sum_probs=212.6

Q ss_pred             HHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             98249969999489991899999999970566788199806489999999999999833888885079723888656699
Q 000621          164 RIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD  243 (1387)
Q Consensus       164 ~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~~~~ilv~~P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~~~~~~~  243 (1387)
                      ++..++++++.||||||||++++..++......+.++++++|+|+||.|++++++.+..+...       ..........
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~-------~~~~~~~~~~   77 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQT-------PAIRAEHTGR   77 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------------CC
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEE-------EEEEECCCCC
T ss_conf             864699499997999978799999999998726998999823899999999998548752111-------3785012576


Q ss_pred             CCEEEECHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf             81999890678997623887785029998173203322017999999997315576389624567989999873049845
Q 000621          244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGIS  323 (1387)
Q Consensus       244 ~~Iiv~Tpg~Ll~~l~~~~~l~~l~~IVIDEaHeR~~~~d~l~~~lk~l~~~~~~~kiIllSAT~~~~~l~~~f~~~~v~  323 (1387)
                      +.|+++|++.|..++..+..+.+++++|+||+|+...+......+++.+. .+++.++++||||++....          
T Consensus        78 ~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~-~~~~~~~v~~SAT~~~~~~----------  146 (305)
T d2bmfa2          78 EIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRV-EMGEAAGIFMTATPPGSRD----------  146 (305)
T ss_dssp             CSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTCCC----------
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCEE----------
T ss_conf             53013774899999845853154008985301112520578889999841-6653138994157876433----------


Q ss_pred             EEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCCH
Q ss_conf             45053110379971488778742000078899999985501689819999388889999999813999926830599998
Q 000621          324 HVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSF  403 (1387)
Q Consensus       324 ~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~~~~v~~lhs~l~~  403 (1387)
                      .......|+............   .....         .....++++||||+++++++.++..|.+.++.+..+|++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~  214 (305)
T d2bmfa2         147 PFPQSNAPIMDEEREIPERSW---NSGHE---------WVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD  214 (305)
T ss_dssp             SSCCCSSCEEEEECCCCCSCC---SSCCH---------HHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHH
T ss_pred             EECCCCCCCEEEEEECCHHHH---HHHHH---------HHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf             402347861279986158889---99999---------999607998999630999999999998679989995783847


Q ss_pred             HHHHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCC
Q ss_conf             6566663039-99639999341110177779900999638986--43336898842110102588439998601199999
Q 000621          404 DEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVK--ESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEP  480 (1387)
Q Consensus       404 ~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k--~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~~  480 (1387)
                      ..+.    .+ +|.+++++||+++++|+|+ +++.||++|...  ...|++..+...+...|+|.++|+||+||+||.+.
T Consensus       215 ~~~~----~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~  289 (305)
T d2bmfa2         215 SEYI----KTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK  289 (305)
T ss_dssp             HHGG----GGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSS
T ss_pred             HHHH----HHHCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCC
T ss_conf             7775----4310001135556788725788-8408997587414657338987638804456998898324118682899


Q ss_pred             -CEEEEEECCCCC
Q ss_conf             -859994241000
Q 000621          481 -GRCYRLYSKSDF  492 (1387)
Q Consensus       481 -G~c~~L~t~~~~  492 (1387)
                       |....+|..+..
T Consensus       290 ~~~~~~~~~~~~~  302 (305)
T d2bmfa2         290 NENDQYIYMGEPL  302 (305)
T ss_dssp             CCCEEEEECSCCC
T ss_pred             CCEEEEEECCCCC
T ss_conf             9269999899888

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}	Back information, alignment and structure

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}	Back information, alignment and structure

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}	Back information, alignment and structure

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}	Back information, alignment and structure

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}	Back information, alignment and structure

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}	Back information, alignment and structure

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}	Back information, alignment and structure

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}	Back information, alignment and structure

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}	Back information, alignment and structure

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure