Citrus Sinensis ID: 000642

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------138
METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQVKDKPKRKQPTKAIRLDAEGDASLEDLTNVEAQVPGQEPSPDLEKASSSNKKRKAASGKQTTPKARSTQKTNEPASTVMDYELDDPLQAADPQSQRPKRVKRPKKSINENLEPAFTATPSTMSEQTQYQPMNEFGLGG
ccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccccccccccEEEcHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHccHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccHHHHHHHHHcccccHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHccccccccccccccccccEEEcccEEEccccEEEEccccHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccEEEEcccccccccccccccEEEEEEcccccEEEEEEEEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHccccccccccccEEccccHHHcccHHHHHHHHHHHHHHHHHccccEHEHHHcccHHHHHHHHHHHHHHHHccccccEEEEEcHcHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcHcHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHccccccccccHHccccccccccccccEEEcccccccHHHHHcHHHHHHEEEHccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHcccccEcccccccccHcccccccccccccHHHHccHHHHHccccccccccccccccccccccEEEcccccHHHHHHHHcccHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHEcccHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccc
mettsdwlndisprrptnyheteftpkvmyepayldigegityriplsydklapslnlpsfsdiQVEEFYLKGTLDLGSLAAMMAndkrfgprsrvgmgeprpqYESLQARLKALVasnspqkfslkvsdtgnssipegaagsIQRSILSEGGILQVYYVKVLEKGETYEIIERAlpkkvkvkkdpsvIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFmqnksssqpsevlpvgndkpndqelllsssefepgeeedpeEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSvagsgnidlhnpstmpvtstvqtpelfkgSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEkniwgpflvvapasvlnnWADEISRfcpdlktlpywgglQERMVLrkninpkrlyrrdAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNcrnrllltgtpIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEShaehggtlneHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLaglfdnsrghlnekKILNLMNIVIQLRKvcnhpelfernegssylyfgeipnsllpppfgeledisfsgvrnpieykipkiVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSlasgsdaspvksetfgfthlmdlspAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAmdgelnenhpdrgkvRAVTRLLLipsrsetnllrrkftigpgydpcedLVVSHQERLLSNIKLLNAtytfipqaqappinvqcsdrnftyrmteeqhdpWLKRLLIGFartsenigprkpggphqliqeidselpvakpalqltyqifgscppmqsfdpaklltdsgklQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLrldgsstimdrRDMVRDFQHRSDIFVFLLSTragglginltaADTVIfyesdwnptldlQAMDRAhrlgqtkdVTVYRLICKETVEEKILQRASQKNTVQQLVMTgghvqgdilapEDVVSLLLDDAQLEQKLRelpvqvkdkpkrkqptkairldaegdasledltnveaqvpgqepspdlekasssnkkrkaasgkqttpkarstqktnepastvmdyelddplqaadpqsqrpkrvkrpkksinenlepaftatpstmseqtqyqpmnefglgg
mettsdwlndisprrptnyheteftpkvmyEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEiieralpkkvkvkkdpsviekeemekigkvwvnIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCqrevkmkvsrslklmrgaairtrklARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNavskqkmltntFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEaqaikssnsirWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELttktevmvhcKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGelnenhpdrgkvrAVTRLllipsrsetnllrrKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFipqaqappinvQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKlrelpvqvkdkpkrkqptkairldaegdasleDLTNVEaqvpgqepspdlekasssnkkrkaasgkqttpkarstqktnepastVMDYELDDPlqaadpqsqrpkrvkrpkksinenlepaftatpstmseqtqyqpmnefglgg
METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPkkvkvkkDPSVIEKEEMEKIGKVWVNIVRKDIPKYhktfftfhkkqqIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDkemaevrkreereaaealkreqelreaKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQelllsssefepgeeedpeeaelkkealkaAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQVKDKPKRKQPTKAIRLDAEGDASLEDLTNVEAQVPGQEPSPDLEkasssnkkrkaasGKQTTPKARSTQKTNEPASTVMDYELDDPLQAADPQSQRPKRVKRPKKSINENLEPAFTATPSTMSEQTQYQPMNEFGLGG
*******************HETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAM**************************************************************RSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKV*****VI**EEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVD**********************************NFLIQQTELY*****************************************************************************************************************TPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLAS*******KSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL*******GKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFART******************IDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDA******************************************************************************************************************************************************
****S*****************EFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGS*******************************************************************************************************************EKIGKVWVNIVRKDIPKYHKTFF************F*ETC**********************RKLARDMLLFWKRV*************************************LIQQTE****************************************************************************************************************TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK*****************NRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISL******************LMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQS**************SETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGG********************LTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIM*RR*****FQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDD*******************************************************************************************************************************************************
METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM************PVGNDKPNDQELLLSSS****************KEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQV***********AIRLDAEGDASLEDLTNVEAQ******************************************STVMDYELDDPLQAA*************KKSINENLEPAFTATPSTMSEQTQYQPMNEFGLGG
***************PTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDK*********************ARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSS*****************************EEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAA***********************T*PVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQVKDKP*R************************A*********************************************V***E********************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQVKDKPKRKQPTKAIRLDAEGDASLEDLTNVEAQVPGQEPSPDLEKASSSNKKRKAASGKQTTPKARSTQKTNEPASTVMDYELDDPLQAADPQSQRPKRVKRPKKSINENLEPAFTATPSTMSEQTQYQPMNEFGLGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1377 2.2.26 [Sep-21-2011]
Q8RXS61507 DNA helicase INO80 OS=Ara yes no 0.970 0.887 0.746 0.0
Q6ZPV2 1559 DNA helicase INO80 OS=Mus yes no 0.713 0.629 0.454 0.0
Q9ULG1 1556 DNA helicase INO80 OS=Hom yes no 0.716 0.633 0.456 0.0
Q1DUF91662 Putative DNA helicase INO N/A no 0.715 0.592 0.412 0.0
Q0CA781690 Putative DNA helicase ino N/A no 0.696 0.567 0.410 0.0
Q2UTQ91444 Putative DNA helicase ino no no 0.703 0.671 0.413 0.0
A1C9W61707 Putative DNA helicase ino N/A no 0.706 0.570 0.423 0.0
A7TJI31556 Putative DNA helicase INO N/A no 0.681 0.603 0.410 0.0
Q6BGY81364 Putative DNA helicase INO yes no 0.716 0.722 0.419 0.0
O141481604 Putative DNA helicase ino yes no 0.680 0.584 0.422 0.0
>sp|Q8RXS6|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2 Back     alignment and function desciption
 Score = 2097 bits (5434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1018/1363 (74%), Positives = 1162/1363 (85%), Gaps = 26/1363 (1%)

Query: 1    METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPS 60
            M+ + ++  D++P R  +YH+ + TPK+ YEP+YLDIG+G+ Y+IP SYDKL  SLNLPS
Sbjct: 150  MDNSPNFAADVTPHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIPPSYDKLVASLNLPS 209

Query: 61   FSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNS 120
            FSDI VEEFYLKGTLDL SLA +MA+DKR G RSR GMGEPRPQYESLQAR+KAL  SNS
Sbjct: 210  FSDIHVEEFYLKGTLDLRSLAELMASDKRSGVRSRNGMGEPRPQYESLQARMKALSPSNS 269

Query: 121  PQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKK 179
               FSLKVS+   NS+IPEG+AGS  R+ILSEGG+LQV+YVK+LEKG+TYEI++R+LPKK
Sbjct: 270  TPNFSLKVSEAAMNSAIPEGSAGSTARTILSEGGVLQVHYVKILEKGDTYEIVKRSLPKK 329

Query: 180  VKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK 239
            +K K DP+VIEK E +KI K W+NIVR+DI K+H+ F TFH+K  IDAKRFA+ CQREV+
Sbjct: 330  LKAKNDPAVIEKTERDKIRKAWINIVRRDIAKHHRIFTTFHRKLSIDAKRFADGCQREVR 389

Query: 240  MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAK 299
            MKV RS K+ R A IRTRK++RDMLLFWKR DK+MAE RK++E+EAAEA KREQE RE+K
Sbjct: 390  MKVGRSYKIPRTAPIRTRKISRDMLLFWKRYDKQMAEERKKQEKEAAEAFKREQEQRESK 449

Query: 300  RQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPE 359
            RQQQRLNFLI+QTELYSHFMQNK+ S PSE LP+G++ P D E+L  +S  EP E EDPE
Sbjct: 450  RQQQRLNFLIKQTELYSHFMQNKTDSNPSEALPIGDENPID-EVLPETSAAEPSEVEDPE 508

Query: 360  EAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPS 419
            EAELK++ L+AAQ+AVSKQK +T+ FDTE  KLR+ ++ E  + D+SV+GS NIDLHNPS
Sbjct: 509  EAELKEKVLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPS 568

Query: 420  TMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479
            TMPVTSTVQTPELFKG+LKEYQ+KGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL
Sbjct: 569  TMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 628

Query: 480  AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRR 539
            AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQER +LRKNINPKR+YRR
Sbjct: 629  AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRR 688

Query: 540  DAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLT 599
            DAGFHILITSYQLLV DEKYFRRVKWQYMVLDEAQAIKSS+SIRWKTLLSFNCRNRLLLT
Sbjct: 689  DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLT 748

Query: 600  GTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILK 659
            GTPIQNNMAELWALLHFIMP LFD+H+QFNEWFSKGIE+HAEHGGTLNEHQLNRLHAILK
Sbjct: 749  GTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILK 808

Query: 660  PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI 719
            PFMLRRVKKDV+SELTTKTEV VHCKLSSRQQAFYQAIKNKISLA LFD++RG   +KK+
Sbjct: 809  PFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKV 868

Query: 720  LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEY 779
            LNLMNIVIQLRKVCNHPELFERNEGSSYLYFG   NSLLP PFGELED+ +SG +NPI Y
Sbjct: 869  LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGVTSNSLLPHPFGELEDVHYSGGQNPIIY 928

Query: 780  KIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKS 839
            KIPK++HQE+LQ+SE  CS+VG GISRE F K FNI+S E + +SIF   SG D     S
Sbjct: 929  KIPKLLHQEVLQNSETFCSSVGRGISRESFLKHFNIYSPEYILKSIFPSDSGVDQVVSGS 988

Query: 840  ETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHP 899
              FGF+ LMDLSP+EV +LA  S  ERLLF++LRW+RQFLD +++  ME+ DG+L++N+ 
Sbjct: 989  GAFGFSRLMDLSPSEVGYLALCSVAERLLFSILRWERQFLDELVNSLMESKDGDLSDNNI 1048

Query: 900  DRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF 959
            +R K +AVTR+LL+PS+ ETN  +R+ + GP     E LV+SHQ+R LS+IKLL++ YT+
Sbjct: 1049 ERVKTKAVTRMLLMPSKVETNFQKRRLSTGPTRPSFEALVISHQDRFLSSIKLLHSAYTY 1108

Query: 960  IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGG-PHQLIQE 1018
            IP+A+APP+++ CSDRN  YR+TEE H PWLKRLLIGFARTSE  GPRKP   PH LIQE
Sbjct: 1109 IPKARAPPVSIHCSDRNSAYRVTEELHQPWLKRLLIGFARTSEANGPRKPNSFPHPLIQE 1168

Query: 1019 IDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLF 1078
            IDSELPV +PALQLT++IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRA NHRVLLF
Sbjct: 1169 IDSELPVVQPALQLTHRIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLF 1228

Query: 1079 AQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138
            AQMTKMLNILEDYMNYRKY+YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI
Sbjct: 1229 AQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1288

Query: 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNT 1198
            NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKIL RASQKNT
Sbjct: 1289 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNT 1348

Query: 1199 VQQLVMTGGHVQG-DILAPEDVVSLLLDD---AQLEQKLRELPVQVKDKPKRKQPTKAIR 1254
            VQQLVMTGGHVQG D L   DVVSLL+DD   AQLEQK RELP+QVKD+ K+K  TK IR
Sbjct: 1349 VQQLVMTGGHVQGDDFLGAADVVSLLMDDAEAAQLEQKFRELPLQVKDRQKKK--TKRIR 1406

Query: 1255 LDAEGDASLEDLTNVEAQVPGQEPSPDLEKASSSNKKRKAASGKQTTPKARSTQKTNEPA 1314
            +DAEGDA+LE+L +V+ Q  GQEP  + EK  SSNKKR+AAS     PKAR+ QK  E A
Sbjct: 1407 IDAEGDATLEELEDVDRQDNGQEPLEEPEKPKSSNKKRRAAS----NPKARAPQKAKEEA 1462

Query: 1315 STVMDYELDDPLQAADPQSQRPKRVKRPKKSINENLEPAFTAT 1357
            +              +   QR KRVKR  KSINE+LEP F+A+
Sbjct: 1463 N-------------GEDTPQRTKRVKRQTKSINESLEPVFSAS 1492
DNA helicase and probable main scaffold component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2 Back     alignment and function description
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2 Back     alignment and function description
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS) GN=INO80 PE=3 SV=1 Back     alignment and function description
>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1 Back     alignment and function description
>sp|Q2UTQ9|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ino80 PE=3 SV=1 Back     alignment and function description
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80 PE=3 SV=1 Back     alignment and function description
>sp|A7TJI3|INO80_VANPO Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1 Back     alignment and function description
>sp|Q6BGY8|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=INO80 PE=3 SV=2 Back     alignment and function description
>sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ino80 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1377
224139776 1540 chromatin remodeling complex subunit [Po 0.995 0.890 0.807 0.0
297739617 1557 unnamed protein product [Vitis vinifera] 0.997 0.881 0.793 0.0
225441914 1563 PREDICTED: DNA helicase INO80-like [Viti 0.998 0.879 0.791 0.0
449449819 1501 PREDICTED: DNA helicase INO80-like [Cucu 0.976 0.895 0.777 0.0
30694618 1507 DNA helicase INO80 complex-like 1 [Arabi 0.970 0.887 0.746 0.0
356572002 1531 PREDICTED: DNA helicase INO80-like isofo 0.990 0.890 0.753 0.0
297817054 1507 hypothetical protein ARALYDRAFT_907192 [ 0.970 0.887 0.743 0.0
356572004 1542 PREDICTED: DNA helicase INO80-like isofo 0.990 0.884 0.747 0.0
334186052 1540 DNA helicase INO80 complex-like 1 [Arabi 0.970 0.868 0.727 0.0
6735309 1496 helicase-like protein [Arabidopsis thali 0.962 0.886 0.738 0.0
>gi|224139776|ref|XP_002323271.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222867901|gb|EEF05032.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2306 bits (5975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1119/1386 (80%), Positives = 1232/1386 (88%), Gaps = 15/1386 (1%)

Query: 1    METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPS 60
            METTS+W+NDI P +  +YHE EFTPK+ YEP YLDIG+G+TYRIP SYDKLA SLNLPS
Sbjct: 152  METTSEWVNDIVPSKRGDYHEPEFTPKIYYEPPYLDIGDGVTYRIPPSYDKLAASLNLPS 211

Query: 61   FSDIQVEEFYLKGTLDLGSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNS 120
            FSD++VEEFYLKGTLDLGSLAAM ANDKRFG RSR GMGEP+ QYESLQ RLKAL ASNS
Sbjct: 212  FSDMRVEEFYLKGTLDLGSLAAMTANDKRFGLRSRAGMGEPQLQYESLQGRLKALAASNS 271

Query: 121  PQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYYVKVLEKGETYEIIERALPKK 179
             +KFSLK+S+   NSSIPEGAAG+I+RSILSEGG++QVYYVKVLEKG+TYEIIER+LPKK
Sbjct: 272  AEKFSLKISEEALNSSIPEGAAGNIKRSILSEGGVMQVYYVKVLEKGDTYEIIERSLPKK 331

Query: 180  VKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQRE-- 237
             K+ KDPSVIE+EEME+IGKVWVNIVR+DIPK+H+ F TFH+KQ IDAKRF+E CQRE  
Sbjct: 332  PKIIKDPSVIEREEMERIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDAKRFSENCQREAC 391

Query: 238  ---VKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQE 294
               VK+KVSRSLK+M+GAAIRTRKLARDMLLFWKRVDKEMAEVRK+EEREAAEALKREQE
Sbjct: 392  IYHVKLKVSRSLKIMKGAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALKREQE 451

Query: 295  LREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGE 354
            LREAKRQQQRLNFLIQQTEL+SHFM NK +SQPSE LP+ ++K +DQ +  S++E  P  
Sbjct: 452  LREAKRQQQRLNFLIQQTELFSHFMSNKPNSQPSEALPIADEKTDDQVMDCSTAEAGPDP 511

Query: 355  EEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNID 414
            EEDPE+AEL+KEALKAAQ+AVSKQK+LT+ FD+ECSKLRE AD E  + D SVAGS NID
Sbjct: 512  EEDPEDAELRKEALKAAQDAVSKQKLLTSAFDSECSKLREVADIEGPITDASVAGSSNID 571

Query: 415  LHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQ-----GLNGILADEMGLGKT 469
            L  PSTMPVTSTV+TPELFKGSLKEYQLKGLQWLVNCYEQ     GLNGILADEMGLGKT
Sbjct: 572  LQTPSTMPVTSTVKTPELFKGSLKEYQLKGLQWLVNCYEQSMLSQGLNGILADEMGLGKT 631

Query: 470  IQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK 529
            IQAMAFLAHLAEEKNIWGPFL+VAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK
Sbjct: 632  IQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK 691

Query: 530  NINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589
            NINPKRLYRR+AGFHILITSYQLLV+DEKYFRRVKWQYMVLDEAQAIKS+NSIRWKTLLS
Sbjct: 692  NINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLS 751

Query: 590  FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEH 649
            FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIE+HAEHGGTLNEH
Sbjct: 752  FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH 811

Query: 650  QLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDN 709
            QLNRLHAILKPFMLRRVKKDV+SELT KTEV VHCKLSSRQQAFYQAIKNKISLA LFD+
Sbjct: 812  QLNRLHAILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDS 871

Query: 710  SRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDIS 769
            +RGHLNEKKI+NLMNIVIQLRKVCNHPELFERNEG +Y YFGEIPNS LP PFGELEDI 
Sbjct: 872  NRGHLNEKKIMNLMNIVIQLRKVCNHPELFERNEGITYFYFGEIPNSFLPSPFGELEDIH 931

Query: 770  FSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLA 829
            +SG RNPI YKIPK+VH EI+QSSE+LCSA+G G  RE FQK FNIFS+ENVY+S+F+L 
Sbjct: 932  YSGGRNPITYKIPKVVHNEIVQSSEVLCSAIGRGFGRESFQKHFNIFSSENVYRSVFALD 991

Query: 830  SGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEA 889
            + SD+  +KS TFGF+HLMDLSPAEVAFLA  SFMERLLF ++RW R+FLDGILD+ M+ 
Sbjct: 992  NSSDSLLIKSGTFGFSHLMDLSPAEVAFLAISSFMERLLFFIMRWGRRFLDGILDLLMKD 1051

Query: 890  MDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSN 949
            ++ + + N+ ++ KVRAVTR+LL+PSRSET++LRRK   GP   P E LV SHQ+RLLSN
Sbjct: 1052 IEND-HSNYLEKHKVRAVTRMLLMPSRSETDILRRKMATGPADTPFEALVNSHQDRLLSN 1110

Query: 950  IKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKP 1009
            IKLL++TYTFIP+ +APPI  QCSDRNF Y+M EE H P +KRLL GFARTS   GPRKP
Sbjct: 1111 IKLLHSTYTFIPRTRAPPIGGQCSDRNFAYQMMEELHQPMVKRLLTGFARTSTFNGPRKP 1170

Query: 1010 GGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR 1069
               H LIQEIDSELPV++PALQLTY+IFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR
Sbjct: 1171 EPLHPLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLR 1230

Query: 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLL 1129
            AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ R+DIFVFLL
Sbjct: 1231 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRNDIFVFLL 1290

Query: 1130 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKI 1189
            STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKI
Sbjct: 1291 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKI 1350

Query: 1190 LQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQKLRELPVQVKDKPKRKQP 1249
            LQRASQKNTVQQLVMTGGHVQ D+LAPEDVVSLLLDDAQLEQKLRE+P+Q +D+ K+K P
Sbjct: 1351 LQRASQKNTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQLEQKLREIPLQARDRQKKK-P 1409

Query: 1250 TKAIRLDAEGDASLEDLTNVEAQVPGQEPSPDLEKASSSN-KKRKAASGKQTTPKARSTQ 1308
            TKAIR+DAEGDA+ EDLT   AQ  G E S D EK  S N  KRKAAS KQ T K R++Q
Sbjct: 1410 TKAIRVDAEGDATFEDLTETVAQGTGNEQSEDAEKLKSPNSNKRKAASDKQITSKPRNSQ 1469

Query: 1309 KTNEPASTVMDYELDDPLQAADPQSQRPKRVKRPKKSINENLEPAFTATPSTMSEQTQYQ 1368
            K NEP S+ MDYELDDP   ++PQSQRPKR+KRPKKS+NE LEPAFTATPS  S Q QY 
Sbjct: 1470 K-NEPNSSPMDYELDDPFPNSEPQSQRPKRLKRPKKSVNEKLEPAFTATPSIDSSQIQYP 1528

Query: 1369 PMNEFG 1374
            P N   
Sbjct: 1529 PTNNLA 1534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739617|emb|CBI29799.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441914|ref|XP_002278785.1| PREDICTED: DNA helicase INO80-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449819|ref|XP_004142662.1| PREDICTED: DNA helicase INO80-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30694618|ref|NP_191289.2| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] gi|238065083|sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gi|332646116|gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356572002|ref|XP_003554159.1| PREDICTED: DNA helicase INO80-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297817054|ref|XP_002876410.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp. lyrata] gi|297322248|gb|EFH52669.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356572004|ref|XP_003554160.1| PREDICTED: DNA helicase INO80-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|334186052|ref|NP_001190117.1| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] gi|332646117|gb|AEE79638.1| DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6735309|emb|CAB68136.1| helicase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1377
ZFIN|ZDB-GENE-041014-72 1582 ino80 "INO80 homolog (S. cerev 0.393 0.342 0.491 2.3e-221
DICTYBASE|DDB_G02923582129 ino80 "CHR group protein" [Dic 0.636 0.411 0.453 1.4e-217
UNIPROTKB|E1BAN81566 INO80 "Uncharacterized protein 0.392 0.345 0.490 2.1e-213
UNIPROTKB|F1NYY91564 INO80 "Uncharacterized protein 0.392 0.345 0.492 2.1e-213
UNIPROTKB|Q9ULG11556 INO80 "DNA helicase INO80" [Ho 0.392 0.347 0.490 3.5e-213
MGI|MGI:19153921559 Ino80 "INO80 homolog (S. cerev 0.392 0.347 0.492 5.7e-213
UNIPROTKB|F1PKX51560 INO80 "Uncharacterized protein 0.392 0.346 0.490 7.2e-213
UNIPROTKB|F1SSV01566 INO80 "Uncharacterized protein 0.392 0.345 0.490 9.2e-213
RGD|13109691553 Ino80 "INO80 homolog (S. cerev 0.388 0.344 0.490 1.5e-210
FB|FBgn0086613 1638 Ino80 "Ino80" [Drosophila mela 0.387 0.325 0.460 1.8e-206
ZFIN|ZDB-GENE-041014-72 ino80 "INO80 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1348 (479.6 bits), Expect = 2.3e-221, Sum P(4) = 2.3e-221
 Identities = 271/551 (49%), Positives = 345/551 (62%)

Query:   199 KVWVNIVRKDIPKYXXXXXXXXXXXXIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRK 258
             KVW+ I +K+IPK              +A++ A  C REV+    ++ K  +    R R+
Sbjct:   280 KVWLTIAKKEIPKAFKQKVSARNFVLTNARKLAHQCMREVRRAAIQAQKNCKETLPRARR 339

Query:   259 LARDMLLFWKRVDXXXXXXXXXXXXXXXXXXXXXXXXXXXKRQQQRLNFLIQQTELYSHF 318
             L ++MLL+WK+ +                           KRQQ++LNFLI QTELY+HF
Sbjct:   340 LTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHF 399

Query:   319 MQNKSSS----QPSEVLPVGNDKPNDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQNA 374
             M  K ++       E+L    D  + +                             A+ A
Sbjct:   400 MGGKQNAGGDCTQEEILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSDYYKSQALKNAKEA 459

Query:   375 VSKQKMLTNTFDTECSKLREAADTEAAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFK 434
                 +  T  FD E    R  A   AA +  S  G  +  L NPS +     +  P +F 
Sbjct:   460 YQIHQARTRLFDEEAKDSR-CASLHAASMSGSGFGE-SYSLSNPS-IQAGEDIPQPTIFN 516

Query:   435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494
             G LK YQLKG+ WL N YEQG+NGILADEMGLGKT+Q++A LAHLAE +NIWGPFL+++P
Sbjct:   517 GKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISP 576

Query:   495 ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV 554
             AS LNNW  E SRF P  K LPYWG   +R V+RK  + K LY ++A FH++ITSYQL+V
Sbjct:   577 ASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVV 636

Query:   555 ADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALL 614
              D KYF+RVKWQYMVLDEAQA+KSS S+RWK LL F CRNRLLLTGTPIQN MAELWALL
Sbjct:   637 QDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALL 696

Query:   615 HFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISEL 674
             HFIMPTLFDSHE+FNEWFSK IESHAE+   ++E+QL+RLH ILKPFMLRR+KKDV +EL
Sbjct:   697 HFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 756

Query:   675 TTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNE--KKILNLMNIVIQLRKV 732
             + K E++ +C+L+SRQ+  YQA+KNKIS+  L  +S G   +      +LMN+V+Q RKV
Sbjct:   757 SDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKV 816

Query:   733 CNHPELFERNE 743
             CNHP+LFER E
Sbjct:   817 CNHPDLFERQE 827
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
DICTYBASE|DDB_G0292358 ino80 "CHR group protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAN8 INO80 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYY9 INO80 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULG1 INO80 "DNA helicase INO80" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1915392 Ino80 "INO80 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKX5 INO80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSV0 INO80 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1310969 Ino80 "INO80 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0086613 Ino80 "Ino80" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXS6INO80_ARATH3, ., 6, ., 4, ., 1, 20.74680.97090.8871yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.991
3rd Layer3.6.40.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR929
chromatin remodeling complex subunit (1541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1377
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 2e-99
PLN031421033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-84
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-66
pfam13892140 pfam13892, DBINO, DNA-binding domain 7e-62
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 3e-51
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 5e-38
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 5e-29
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 7e-29
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-22
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-22
smart0049082 smart00490, HELICc, helicase superfamily c-termina 1e-21
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 5e-04
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  319 bits (820), Expect = 2e-99
 Identities = 132/307 (42%), Positives = 185/307 (60%), Gaps = 13/307 (4%)

Query: 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLA-HLAEEKNIWGPFLVVAPASVL 498
           YQL+G+ WL++    GL GILADEMGLGKT+Q +A LA +L E K+  GP LVV P S L
Sbjct: 1   YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60

Query: 499 NNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLL---VA 555
           +NW +E  ++ P L+ + Y G  +ER  LR++     + +R   + ++IT+Y++L     
Sbjct: 61  HNWLNEFEKWAPALRVVVYHGDGRERSKLRQS-----MAKRLDTYDVVITTYEVLRKDKK 115

Query: 556 DEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLH 615
                 +V+W  +VLDEA  +K+S S  +K L     RNRLLLTGTPIQNN+ ELWALL+
Sbjct: 116 LLSLLNKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLN 175

Query: 616 FIMPTLFDSHEQFNEWFSKGIESHA---EHGGTLNEHQLNRLHAILKPFMLRRVKKDVIS 672
           F+ P  F S + F EWF+  I + A          +  +NRLH +LKPF+LRR K DV  
Sbjct: 176 FLRPGPFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEK 235

Query: 673 ELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKV 732
            L  KTE +++C LS  Q+  Y+ +  K     L     G      I +L+N+++QLRK+
Sbjct: 236 SLPPKTEHVLYCNLSDEQRKLYKKLLTK-RRLALSFAVEGGEKNVGIASLLNLIMQLRKI 294

Query: 733 CNHPELF 739
           CNHP LF
Sbjct: 295 CNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1377
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
KOG02981394 consensus DEAD box-containing helicase-like transc 100.0
PF13892139 DBINO: DNA-binding domain 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766773 Hef nuclease; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.94
PHA02558501 uvsW UvsW helicase; Provisional 99.94
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.93
KOG1123776 consensus RNA polymerase II transcription initiati 99.92
PTZ00110545 helicase; Provisional 99.83
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.83
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.82
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.81
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.81
KOG0354746 consensus DEAD-box like helicase [General function 99.8
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.8
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.8
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.79
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.79
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.79
PTZ00424401 helicase 45; Provisional 99.78
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.78
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.77
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.76
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.75
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.73
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.72
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.72
PRK13767 876 ATP-dependent helicase; Provisional 99.71
PRK106891147 transcription-repair coupling factor; Provisional 99.7
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.69
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.67
PRK02362737 ski2-like helicase; Provisional 99.65
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.64
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.64
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.63
PRK01172674 ski2-like helicase; Provisional 99.61
PRK00254720 ski2-like helicase; Provisional 99.6
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.56
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.53
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.53
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.51
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.51
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.49
smart00487201 DEXDc DEAD-like helicases superfamily. 99.47
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.46
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.42
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.41
PHA02653675 RNA helicase NPH-II; Provisional 99.41
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.4
PRK09401 1176 reverse gyrase; Reviewed 99.38
smart0049082 HELICc helicase superfamily c-terminal domain. 99.38
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.37
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.35
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.34
PRK05580679 primosome assembly protein PriA; Validated 99.31
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.27
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.24
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.23
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.23
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.21
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.18
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.18
PRK09694878 helicase Cas3; Provisional 99.16
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.15
COG1205 851 Distinct helicase family with a unique C-terminal 99.15
KOG4284 980 consensus DEAD box protein [Transcription] 99.13
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.11
COG1204766 Superfamily II helicase [General function predicti 99.09
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.09
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.09
PRK14701 1638 reverse gyrase; Provisional 99.08
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.07
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.04
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.04
COG4889 1518 Predicted helicase [General function prediction on 99.0
COG4096875 HsdR Type I site-specific restriction-modification 99.0
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 98.99
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 98.98
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 98.96
KOG0343 758 consensus RNA Helicase [RNA processing and modific 98.95
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 98.93
PRK12904830 preprotein translocase subunit SecA; Reviewed 98.93
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.91
COG11971139 Mfd Transcription-repair coupling factor (superfam 98.82
COG1202830 Superfamily II helicase, archaea-specific [General 98.76
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.75
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.72
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.65
PRK05298652 excinuclease ABC subunit B; Provisional 98.62
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.61
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.57
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 98.57
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.56
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 98.54
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 98.54
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.51
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.44
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 98.43
PRK12326764 preprotein translocase subunit SecA; Reviewed 98.4
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 98.38
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 98.35
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 98.34
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 98.34
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 98.23
KOG0327397 consensus Translation initiation factor 4F, helica 98.23
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.15
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 98.13
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 98.09
PRK15483986 type III restriction-modification system StyLTI en 98.09
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.05
PF13871278 Helicase_C_4: Helicase_C-like 97.97
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 97.86
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.82
KOG0334997 consensus RNA helicase [RNA processing and modific 97.79
KOG15131300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 97.74
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 97.69
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 97.55
COG0610962 Type I site-specific restriction-modification syst 97.54
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.5
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.5
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.49
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.48
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.43
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.4
KOG0347731 consensus RNA helicase [RNA processing and modific 97.39
COG1198730 PriA Primosomal protein N' (replication factor Y) 97.3
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 97.19
COG45811041 Superfamily II RNA helicase [DNA replication, reco 97.16
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.1
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 97.04
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 96.96
KOG0346569 consensus RNA helicase [RNA processing and modific 96.93
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 96.85
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 96.85
PRK10536262 hypothetical protein; Provisional 96.74
CHL00122 870 secA preprotein translocase subunit SecA; Validate 96.65
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.6
COG0556663 UvrB Helicase subunit of the DNA excision repair c 96.57
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 96.26
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.23
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 96.21
KOG1131755 consensus RNA polymerase II transcription initiati 95.88
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 95.8
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.77
TIGR00376637 DNA helicase, putative. The gene product may repre 95.74
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 95.72
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 95.64
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 95.63
PRK14873665 primosome assembly protein PriA; Provisional 95.47
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 95.27
KOG1803649 consensus DNA helicase [Replication, recombination 95.2
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 95.03
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 95.0
COG3587985 Restriction endonuclease [Defense mechanisms] 94.99
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 94.93
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 94.88
KOG0347731 consensus RNA helicase [RNA processing and modific 94.87
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 94.83
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 94.79
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 94.39
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 93.78
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 93.53
COG0556663 UvrB Helicase subunit of the DNA excision repair c 93.49
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 93.47
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 93.45
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 93.2
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 93.1
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 93.1
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 93.05
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 92.99
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 92.88
PRK04296190 thymidine kinase; Provisional 92.82
PRK09112351 DNA polymerase III subunit delta'; Validated 92.19
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 91.51
PRK10875615 recD exonuclease V subunit alpha; Provisional 91.24
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 91.17
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 91.11
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 91.08
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 90.96
smart00382148 AAA ATPases associated with a variety of cellular 90.9
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 90.86
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 90.59
PLN03025319 replication factor C subunit; Provisional 90.46
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 90.36
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 89.36
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 89.34
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 89.34
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 89.04
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 89.01
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 88.99
KOG0334997 consensus RNA helicase [RNA processing and modific 88.55
KOG18051100 consensus DNA replication helicase [Replication, r 88.51
PRK06526254 transposase; Provisional 88.39
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 88.17
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 88.1
PHA02533534 17 large terminase protein; Provisional 87.88
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 87.87
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 87.14
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 87.13
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 87.09
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 87.02
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 86.91
PRK08084235 DNA replication initiation factor; Provisional 86.89
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 86.43
PHA03333752 putative ATPase subunit of terminase; Provisional 86.43
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 86.33
CHL00181287 cbbX CbbX; Provisional 86.26
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 86.25
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 86.17
TIGR02928365 orc1/cdc6 family replication initiation protein. M 86.01
PRK12402337 replication factor C small subunit 2; Reviewed 86.01
PRK07940394 DNA polymerase III subunit delta'; Validated 86.01
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 86.0
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 85.95
COG3421812 Uncharacterized protein conserved in bacteria [Fun 85.79
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 85.65
PRK05707328 DNA polymerase III subunit delta'; Validated 84.95
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 84.93
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 84.79
PF0752973 HSA: HSA; InterPro: IPR006562 This domain of unkno 84.55
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 84.13
PRK08181269 transposase; Validated 84.1
PRK14974336 cell division protein FtsY; Provisional 83.88
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 83.87
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 83.8
PRK00440319 rfc replication factor C small subunit; Reviewed 83.65
PRK08058329 DNA polymerase III subunit delta'; Validated 83.59
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 83.42
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 83.42
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 83.19
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 83.01
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 82.94
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 82.69
PRK05298652 excinuclease ABC subunit B; Provisional 82.44
PRK08116268 hypothetical protein; Validated 82.3
cd01124187 KaiC KaiC is a circadian clock protein primarily f 82.05
smart00492141 HELICc3 helicase superfamily c-terminal domain. 81.86
PRK08769319 DNA polymerase III subunit delta'; Validated 81.61
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 81.22
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 81.13
PF1324576 AAA_19: Part of AAA domain 81.1
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 80.88
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 80.86
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 80.38
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 80.29
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 80.27
smart0057373 HSA domain in helicases and associated with SANT d 80.12
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 80.09
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 80.06
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-253  Score=2158.96  Aligned_cols=1033  Identities=54%  Similarity=0.856  Sum_probs=917.3

Q ss_pred             CCccccccccCCCCCCCCccCCCCCcccccCCceeecCCCeeeecCcchhcccccCCCCCCcccceeeeeeecccchhHH
Q 000642            1 METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSL   80 (1377)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (1377)
                      +..+.|+.+|+.++.+|.||+.|.+|++.|+|.|+|||||+.|+|||.|+||.+|||||+||+|+|+||+++||+|+++|
T Consensus       150 ~dns~e~~~D~dsh~r~~~~d~d~~~k~a~e~~~~~i~d~~i~~ie~ry~kl~aSl~l~s~s~i~~ke~n~~~T~~~r~L  229 (1185)
T KOG0388|consen  150 MDNSPEFAADVDSHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIEPRYDKLVASLNLPSFSDIHVKEFNLKGTLDLRSL  229 (1185)
T ss_pred             cCCCccccccCChhhhcchhhhccchhhhccccccCcCCCccccCcchhhhhhhhcCCCchhHHHHHHHhhcccccHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCccCCCCCCCcchhHHHHHHHHHhhcCCCCcceeeeeccCC-CCCCCCCccccchhhhcccCCeeEEEE
Q 000642           81 AAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYY  159 (1377)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (1377)
                      +.||++||+-|.++|.|||+|+|||++++.+||.+...+++..|++.++||+ +|.+|++.+|...+.++++||..+|++
T Consensus       230 ~~~~~s~K~s~v~~r~~~n~p~~~y~~~~sklk~l~~~~~~~~~k~~indAa~~s~~~k~~~g~~a~~l~n~~~~~e~h~  309 (1185)
T KOG0388|consen  230 AELMASDKRSGVRSRNGMNEPRPQYEMTGSKLKDLLKVYERRGEKLNINDAANGSRHIKKCVGDVANDLLNEGGYPEVHH  309 (1185)
T ss_pred             HHHHhhcchhhhhhccCCCCCCcchhhhhhHHHHhhhhcccchhhhhhhhhhccchhhhcccccchhhhhccCCCchhHH
Confidence            9999999999999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             EEeccCCcchhhhhccCcccccccCCchhhhHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000642          160 VKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK  239 (1377)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1377)
                      +|.+++||.++|+-+.+|+|...+.+|.++++-+ .++.++|.+||||||+||||+++++++++.+|+||+|++|+||+|
T Consensus       310 ~r~l~kgd~~e~t~~~~~~k~nak~d~av~~k~e-~~~~~~w~~iaRkdi~k~~riiqq~q~~rstnakk~s~lC~REar  388 (1185)
T KOG0388|consen  310 LRKLAKGDISEITNEMLSQKGNAKTDPAVISKTE-RKITAEWISIARKDIRKVHRIIQQYQSARSTNAKKTSILCAREAR  388 (1185)
T ss_pred             HHHhccccHHHHHHhhcccccccccchhhhhhHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999887644 489999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q 000642          240 MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM  319 (1377)
Q Consensus       240 ~~~~~~~~~~k~~~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~  319 (1377)
                      +|+.|+.|..|+.|+||||++|||+.|||||||+|||+|||+||||+|++|+|+|+||.+||+|||||||||||||||||
T Consensus       389 r~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskRQarklnfLltQTELySHFi  468 (1185)
T KOG0388|consen  389 RWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKRQARKLNFLLTQTELYSHFI  468 (1185)
T ss_pred             HhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHhhhHH
Q 000642          320 QNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTE  399 (1377)
Q Consensus       320 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~  399 (1377)
                      |+|+...+++++|.+...         .+..++..-+++|++.+++.++++||+|++ ++..+.+||.+-...++..+.+
T Consensus       469 ~rK~d~n~se~lp~~~ne---------~sa~e~n~~~d~eea~l~~~~lraAq~Av~-a~~~t~afd~e~~~~~ntse~e  538 (1185)
T KOG0388|consen  469 GRKNDCNLSEALPAERNE---------ISAGEPNGMKDYEEAMLQKLRLRAAQDAVS-AKQITDAFDTEFGAERNTSEFE  538 (1185)
T ss_pred             hhcccCCccccCCccccc---------ccccCcccCCChHHHHHHHHHHHHHHHHHh-HHHhhhhhhhhhhhcccccccc
Confidence            999999998888776542         233345556788999999999999999998 8999999998866555433322


Q ss_pred             HhhhhccccCCCCcccCCCCCCCCCCcccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHH
Q 000642          400 AAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL  479 (1377)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L  479 (1377)
                              ...++++|++|+.+....+|+||++|+|+|++||++||+||++||++|+|||||||||||||||+||+||||
T Consensus       539 --------~~e~e~n~q~~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhL  610 (1185)
T KOG0388|consen  539 --------GPENEGNFQGPTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHL  610 (1185)
T ss_pred             --------CccccccccCCccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHH
Confidence                    335678999999888788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh
Q 000642          480 AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY  559 (1377)
Q Consensus       480 ~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~  559 (1377)
                      ++.++||||||||+|+|+++||.+||.+|+|+|++++|||+..+|++||+||++|++|+++++||||||||+++|.|.+|
T Consensus       611 aE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky  690 (1185)
T KOG0388|consen  611 AETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKY  690 (1185)
T ss_pred             HHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccc
Q 000642          560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESH  639 (1377)
Q Consensus       560 l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~  639 (1377)
                      |++++|+||||||||.||+++|.||+.|++|+|++|||||||||||+|+|||+|||||||++||||++|++||+|+||+|
T Consensus       691 ~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEsh  770 (1185)
T KOG0388|consen  691 LQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESH  770 (1185)
T ss_pred             HHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcchHHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhH
Q 000642          640 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI  719 (1377)
Q Consensus       640 ~~~~~~lne~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~  719 (1377)
                      ++.++++|++||+|||+|||||||||+|++|.++|+.|+|++|+|+||.+|+.+|+.+++.|+...              
T Consensus       771 Ae~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E--------------  836 (1185)
T KOG0388|consen  771 AEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSME--------------  836 (1185)
T ss_pred             HHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHH--------------
Confidence            999999999999999999999999999999999999999999999999999999999999986432              


Q ss_pred             HHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhc
Q 000642          720 LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSA  799 (1377)
Q Consensus       720 ~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~  799 (1377)
                        +.++|||||||||||+||+|.++++.++++-..         .++++ +++.+|||.|.||+|++.+.++        
T Consensus       837 --~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~---------nl~dv-~S~Grnpi~ykiP~L~~~d~le--------  896 (1185)
T KOG0388|consen  837 --MENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD---------NLGDV-VSFGRNPIDYKIPSLVAKDALE--------  896 (1185)
T ss_pred             --HHHHHHHHHHhcCChHHHhhcCCcceeEEEccc---------CHHHH-HhCCCCceeecchHHHHHHHHH--------
Confidence              335999999999999999999999988876443         25566 8889999999999999999874        


Q ss_pred             ccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 000642          800 VGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFL  879 (1377)
Q Consensus       800 ~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~  879 (1377)
                                ..+||||  +.+....     +......+.+.+.|..  .++                            
T Consensus       897 ----------~~~fniy--e~i~~~~-----g~~~~v~Geg~~~w~~--~l~----------------------------  929 (1185)
T KOG0388|consen  897 ----------MFRFNIY--EMIERIN-----GLRRIVNGEGPNAWYL--RLS----------------------------  929 (1185)
T ss_pred             ----------HHHHhHH--HHHHHHh-----hhHhhhcCCCcchhcc--cce----------------------------
Confidence                      2346666  3332211     0111111222222210  000                            


Q ss_pred             hhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccc
Q 000642          880 DGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF  959 (1377)
Q Consensus       880 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1377)
                             .+...++......+... .++.+.++.|.....+..++.+              +++     ...+....+|+
T Consensus       930 -------~e~k~G~~~~~n~e~~~-Kavtr~ll~p~~~~~e~~~rvi--------------~~e-----~~~L~~~~y~y  982 (1185)
T KOG0388|consen  930 -------LEFKYGGYVFRNVEEAG-KAVTRNLLNPESSLLESMRRVI--------------DEE-----AYRLQRHVYCY  982 (1185)
T ss_pred             -------eeeccCCcccccHHHHH-HHHHHHhcCcccchhHHHHHHh--------------hHH-----HHHhhhheeee
Confidence                   01111111111111111 3556666666654444433321              111     14567788999


Q ss_pred             cCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCC
Q 000642          960 IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGS 1039 (1377)
Q Consensus       960 ~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s 1039 (1377)
                      .|.+.+||+-+..                             +.++|               ++++..+.+++...+|  
T Consensus       983 ~P~v~apPvLI~~-----------------------------ead~P---------------eId~E~~~~pLn~~i~-- 1016 (1185)
T KOG0388|consen  983 SPVVAAPPVLISN-----------------------------EADLP---------------EIDLENRHIPLNTTIY-- 1016 (1185)
T ss_pred             ccccCCCCeeeec-----------------------------ccCCC---------------CCCccccCccccccee--
Confidence            9999999974421                             11111               1222223333333444  


Q ss_pred             CCCCCCCCccccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q 000642         1040 CPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1377)
Q Consensus      1040 ~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq 1119 (1377)
                      +|||+.|     +++||||.+||+||.+|+++|||||+|+|||+|+|+||+||.++||+|+|||||++.++|+++|.+||
T Consensus      1017 ~Ppm~~F-----itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ 1091 (1185)
T KOG0388|consen 1017 VPPMNTF-----ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ 1091 (1185)
T ss_pred             cCcHHhh-----hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc
Confidence            7888766     99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000642         1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTV 1199 (1377)
Q Consensus      1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l 1199 (1377)
                      + ++||||||||||||+|||||+||||||||+||||+.|+||||||||+||||+|||||||++|||||+|++||.+|.++
T Consensus      1092 ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~v 1170 (1185)
T KOG0388|consen 1092 A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEV 1170 (1185)
T ss_pred             C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHH
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccCC
Q 000642         1200 QQLVMTGGHVQGD 1212 (1377)
Q Consensus      1200 ~~~Vi~g~~~~~~ 1212 (1377)
                      |++||.|+.++++
T Consensus      1171 Qq~Vm~G~~~qg~ 1183 (1185)
T KOG0388|consen 1171 QQMVMHGNIFQGE 1183 (1185)
T ss_pred             HHHHHcCCcccCC
Confidence            9999999988764

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF13892 DBINO: DNA-binding domain Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00573 HSA domain in helicases and associated with SANT domains Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1377
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 9e-56
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 4e-41
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-42
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-18
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-40
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-17
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 4e-26
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-18
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  216 bits (549), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 190/330 (57%), Gaps = 19/330 (5%)
Query: 426 TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 485
           +VQ P +  G L+++QL G+ W+   + +G NGILADEMGLGKT+Q +AF++ L   +  
Sbjct: 226 SVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ 285
Query: 486 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK---NINPKRLYRRDAG 542
            GP ++V P S +  W D   ++ PDL  + Y G  + R  +R+     NP+   ++   
Sbjct: 286 NGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMK 345
Query: 543 FHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTP 602
           F++L+T+Y+ ++ D      +KWQ+M +DEA  +K++ S  +++L SF   NR+L+TGTP
Sbjct: 346 FNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 405
Query: 603 IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFM 662
           +QNN+ EL AL++F+MP  F   ++ +  F    E   E+        ++ LH  ++PF+
Sbjct: 406 LQNNIKELAALVNFLMPGRFTIDQEID--FENQDEEQEEY--------IHDLHRRIQPFI 455
Query: 663 LRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNL 722
           LRR+KKDV   L +KTE ++  +LS  Q  +Y+ I  K   A       GH       +L
Sbjct: 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGH------FSL 509
Query: 723 MNIVIQLRKVCNHPELFERNEGSSYLYFGE 752
           +NI+ +L+K  NHP LF+  E      FG+
Sbjct: 510 LNIMNELKKASNHPYLFDNAEERVLQKFGD 539
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1377
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-119
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-70
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-102
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-72
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 9e-95
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 7e-53
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 7e-55
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 2e-14
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 6e-45
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 5e-07
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 5e-41
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-34
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-11
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 3e-07
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 7e-09
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 1e-05
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 2e-08
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 1e-05
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 3e-05
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 6e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-04
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
 Score =  391 bits (1007), Expect = e-119
 Identities = 115/330 (34%), Positives = 190/330 (57%), Gaps = 19/330 (5%)

Query: 426 TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 485
           +VQ P +  G L+++QL G+ W+   + +G NGILADEMGLGKT+Q +AF++ L   +  
Sbjct: 226 SVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ 285

Query: 486 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKN---INPKRLYRRDAG 542
            GP ++V P S +  W D   ++ PDL  + Y G  + R  +R+     NP+   ++   
Sbjct: 286 NGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMK 345

Query: 543 FHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTP 602
           F++L+T+Y+ ++ D      +KWQ+M +DEA  +K++ S  +++L SF   NR+L+TGTP
Sbjct: 346 FNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 405

Query: 603 IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFM 662
           +QNN+ EL AL++F+MP  F   ++ +                  E  ++ LH  ++PF+
Sbjct: 406 LQNNIKELAALVNFLMPGRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFI 455

Query: 663 LRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNL 722
           LRR+KKDV   L +KTE ++  +LS  Q  +Y+ I  K + + L   ++G        +L
Sbjct: 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTK-NYSALTAGAKGGHF-----SL 509

Query: 723 MNIVIQLRKVCNHPELFERNEGSSYLYFGE 752
           +NI+ +L+K  NHP LF+  E      FG+
Sbjct: 510 LNIMNELKKASNHPYLFDNAEERVLQKFGD 539
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1377
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 6e-49
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 5e-47
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-28
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 5e-09
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 6e-22
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 2e-04
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 5e-18
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 8e-12
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 7e-11
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 1e-05
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 8e-04
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 0.003
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  171 bits (434), Expect = 6e-49
 Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 25/250 (10%)

Query: 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIW 486
           +  P   K +L+ YQ+KG  W+    + G    LAD+MGLGKT+Q +A  +   +++N  
Sbjct: 3   LLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENEL 61

Query: 487 GPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHIL 546
            P LV+ P SVL NW +E+S+F P L+   +     +               +   + I+
Sbjct: 62  TPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSK--------------IKLEDYDII 107

Query: 547 ITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNN 606
           +T+Y +L+ D +  + V+W+Y+V+DEAQ IK+  +  +K +     + R+ LTGTPI+N 
Sbjct: 108 LTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK 166

Query: 607 MAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRV 666
           + +LW+++ F+ P L  S+ +F   F+  I+         +      L AI+ PF+LRR 
Sbjct: 167 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFILRRT 219

Query: 667 KKD--VISEL 674
           K D  +I++L
Sbjct: 220 KYDKAIINDL 229
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1377
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.88
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.86
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.84
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.83
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.79
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.79
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.73
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.72
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.68
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.68
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.65
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.57
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.45
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.43
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.37
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.36
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.32
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.28
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.19
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.16
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.13
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.11
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.95
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.87
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.76
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.64
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.63
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.57
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.56
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.53
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.49
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.47
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.45
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.37
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.27
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.21
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.15
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.91
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.72
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.67
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.0
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.2
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 90.41
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 89.58
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 89.14
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 88.27
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 87.17
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 85.72
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 81.09
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=403.53  Aligned_cols=173  Identities=36%  Similarity=0.614  Sum_probs=162.0

Q ss_pred             CCCCCHHHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEE
Q ss_conf             344506999999999985-2898599995440489999999973799489944999999999999996037-99249998
Q 000642         1052 LTDSGKLQTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHR-SDIFVFLL 1129 (1377)
Q Consensus      1052 i~~SgKL~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDGStk~edRr~~V~dFq~d-~di~VFLL 1129 (1377)
                      ...|||+..|+.+|..++ ..|+||||||||+.++++|+.+|..+|+.|+++||+++..+|..++++|+++ +..+|||+
T Consensus        97 ~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLl  176 (346)
T d1z3ix1          97 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML  176 (346)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             00178999999999998875189516886301456799999763002411011100278899999865102343302540


Q ss_pred             ECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             24443356676757889983799991135584320100599583899999858999999999999789999999829864
Q 000642         1130 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHV 1209 (1377)
Q Consensus      1130 STrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~gg~~ 1209 (1377)
                      |++|||+||||++|++|||||++|||+.+.||+|||||+||+++|+||||+++|||||+|++++..|..+...|++++..
T Consensus       177 s~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~  256 (346)
T d1z3ix1         177 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD  256 (346)
T ss_dssp             EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS
T ss_pred             CCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             33144433565643079994578861558676333403489984389998738989999999999999999987588655


Q ss_pred             CCCCCCHHHHHHHHC
Q ss_conf             588899886998206
Q 000642         1210 QGDILAPEDVVSLLL 1224 (1377)
Q Consensus      1210 ~~~~l~~edi~~ll~ 1224 (1377)
                      ....++.+++..+|.
T Consensus       257 ~~~~~~~~~l~~lf~  271 (346)
T d1z3ix1         257 VERHFSLGELRELFS  271 (346)
T ss_dssp             CCCSSCHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHC
T ss_conf             540289999999964
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure