Citrus Sinensis ID: 000667

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360---

MADPSWEGGAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHSSSACDDSTSSLPQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAEEESMDPFSSFSESDVHDKDLLIVEDELSQAGMAMQDLVSEASMKMTLDENVSAPTSRKLIAPGDPEFRDQERGLPSSSADESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSEPEFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTKGSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKGKEISIQAERKPSTRELKMSSEVVKEVQRLKRKLGQYQNCSSCFLVNCSCQSDRASSGSSASSSSGDKVSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGDGTLMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHISESCSESLSTNGSKVCAKFWNQLQMLLKKMLATTISTSTNKSSPIGQSNPSVRSADAGKLRELYKMSLKSTELSELPAMHALWTSQ

cccccccccccccccccccHHHHHHcccccccccEEEcccHHHHHHHccccccccEEEEEEEEccEEEEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEccccEEccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHEEEEEEcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHccc

cccccccccHHHcccccccHHHHHHcHccccccEEEEccHHHHHHHHccccccccEEEEEEEcccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHEEcccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEcccccHHccHccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccEEEEEEcccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccEEEEccccccEEEEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEccccccEEEEEccccHccccccccccccccccccEEEHHHHHHHHccEEEEEEEEcccEcccccccccccccEEccHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccEEEcccccccccccccEEccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcEcEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcEEcccccccHHHHHHHHHHHHHccccEEcccccccccccHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcc

madpsweggaiasNLSRKCEALAVSGLveygddidvisptdILKQIfkipyskarlsisVHRVGQTLVLNYGADVEEGEKLIRRhgnqskcadQSLFLNFAMHSVrmeacdcppthqspserqanssvlpgrdasnfvgqtedvarkegsghfseypkvqqdssiwdsrknkrnknhdpvkkashvgekprcsiqesekhrrvgndGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHengvvqgyellktddifllkgvsddgtpafhphvvqqSGLSVLRFLQEnckqdpgaywLYKSAGEDVIRLFDlsvipknhsssacddstsslpqihrgrsdslfSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDleltseslpveckitvtdaeeesmdpfssfsesdvhdkdlLIVEDELSQAGMAMQDLVSEASMKMtldenvsaptsrkliapgdpefrdqerglpsssadesfavcrmsptstnviETVADPISSKLAAVHHVSQAIKSLRWkrqlqssepefinqnirvgdtlpspnfsvcacgdadcievcdirewlptskldnKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSvygsmpqhredtkfissmtkgslspivftdrrkmtgsfvgdmkevnsssndgclnseqLSSAYLFWARAWTLVGDVYVEFHMIKGKeisiqaerkpstrelKMSSEVVKEVQRLKRKlgqyqncsscflvncscqsdrassgssassssgdkvsiaygrkhnkrshaksasyslqgdpadsflnckdentksldngnlqlnrgdgtlmgasNVISEKLedlnatnskrvehtsgthdveskVSTQVEFasrdkpkvknggifkyledpvvgdaenNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYetgawedisvpcegrtrkelrKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLesdhkknnlpkgensFVHRVRQYASLAERNWQKamdfygprshptmYLTILMERSDLSFRLSCFLHSNAMLETALSCLLegrhisescseslstngsKVCAKFWNQLQMLLKKMLATTiststnksspigqsnpsvrsadaGKLRELYKMSLKstelselpamHALWTSQ

madpsweggaiasNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARkegsghfseypkvqqdssiwdsrknkrnknhdpvkkashvgekprcsiqesekhrrvgNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHsssacddstsslpqihrgrsDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAeeesmdpfssfsesdvhdKDLLIVEDELSQAGMAMQDLVSEASMKMTLDenvsaptsrkliapgdpefrdqERGLPSSSADESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSEPEFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWlptskldnkLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHRedtkfissmtkgslspivftdRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKgkeisiqaerkpstrelkmsseVVKEVQRLKRKLGQYQNCSSCFLVNCSCQSDRAssgssassssgdkVSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGDGTLMGASNVISEKLEDLNATNSkrvehtsgthdveskvstqvefasrdkpkvknggifKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVlkkkgwvcneMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYetgawedisvpcegrtrkelrkhevsandaIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKknnlpkgensfvHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHISESCSESLSTNGSKVCAKFWNQLQMLLKKMLATTISTstnksspigqsnpsvrsadaGKLRELYKMSLkstelselpamhalwtsq

MADPSWEGGAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHsssacddstssLPQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAEEESMDPFSSFSESDVHDKDLLIVEDELSQAGMAMQDLVSEASMKMTLDENVSAPTSRKLIAPGDPEFRDQERGLPSSSADESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSEPEFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSkldnklwklvlllGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTKGSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKGKEISIQAERKPSTRELKMSSEVVKEVQRLKRKLGQYQNCSSCFLVNCSCQSDRassgssassssgDKVSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGDGTLMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHISESCSESLSTNGSKVCAKFWNQLQMLLKKMLATTISTSTNKSSPIGQSNPSVRSADAGKLRELYKMSLKSTELSELPAMHALWTSQ

***********ASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEAC********************************************************************************************VGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIP************************SLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITV*************************************************************************************************NVIETVADPISSKLAAVHHVSQAIKSLRWKRQL*****EFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGS*********************IVFT****************************QLSSAYLFWARAWTLVGDVYVEFHMIKGKEIS***********************RLKRKLGQYQNCSSCFLVNCSC****************************************************************************************************************************GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEG***************AIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLES************SFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFL*******************************SKVCAKFWNQLQMLLKKMLATTI***************************************************

*********AIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEK***********ADQSLFLNFAMHSVR****************************************************************************************************GFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLH******QVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPK*************************FSLGTLLYRIA***************ARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEE**************************************************************************************************************************PISSKLAAVHHVSQAI*********************RVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFI****************RKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKG*********************************GQYQNCSSCFLVN***********************************************************************************SEKLEDL**************************************GIFKYLEDPVVGDAENNLSSALSCYEEAVKAL************VLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMV**********************AKLEYCESLRYYRAAKLQLNS*****GSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAE*******************************AIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESD****************VRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSF**********MLETALSCLLEGRHIS***************AKFWNQLQMLLKKMLAT***************************RELYKMSLKSTELSELPAMHALWTS*

********GAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDC****************LPGRDASNFVGQTEDV********************IWDSR*******************************RRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKN*************PQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAEEESMDPFSSFSESDVHDKDLLIVEDELSQAGMAMQDLVSEASMKMTLDENVSAPTSRKLIAPGDPEFR************ESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSEPEFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTKGSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKGKEISIQAERKPSTRELKMSSEVVKEVQRLKRKLGQYQNCSSCFLVNCSC******************VSIAYGR***************QGDPADSFLNCKDENTKSLDNGNLQLNRGDGTLMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHIS***********SKVCAKFWNQLQMLLKKMLATTIST*****************ADAGKLRELYKMSLKSTELSELPAMHALWTSQ

****SWEGGAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEAC**********ERQANSSVLPGRDASNFV******************************************************************NDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHSSS***DSTSSLPQ**RGRSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTS**********************************************************************************************DESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSEPEFINQNIRVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTKGSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKGKEISI*********ELKMSSEVVKEVQRLKRKLGQYQNCSSCFLVNCSCQ*********************************************************************GTLMGASNVISEKLEDL***********************************KNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDI*****GRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHISESCSESLSTNGSKVCAKFWNQLQMLLKKMLATTI********************DAGKLRELYKMSLKSTELSELPAMHALWTSQ

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1363	2.2.26 [Sep-21-2011]
Q3B7T1		1238	Erythroid differentiation	yes	no	0.217	0.239	0.288	6e-39
Q6GQV7		1239	Erythroid differentiation	yes	no	0.267	0.294	0.247	1e-37
Q5R9R1		1204	Erythroid differentiation	yes	no	0.195	0.221	0.295	1e-37

>sp\|Q3B7T1\|EDRF1_HUMAN Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1 PE=1 SV=1	Back alignment and function desciption

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 182/347 (52%), Gaps = 51/347 (14%)

Query: 31  GDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEE------------- 77
           G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L+   D++E             
Sbjct: 118 GNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLD-ELDIQELFMRSSQTGDWTW 176

Query: 78  ---------GEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSV 128
                     +K  R+  ++     +++   F  +S+  +    P +  S +E+Q +SS 
Sbjct: 177 LKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVS--STAEQQESSSS 234

Query: 129 LPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGE 188
                      QT D         F     V +D S      ++ ++  +P     HV  
Sbjct: 235 ----------DQTNDSEGASWPAPFEMPSSVSEDPSA----SSQGSEPLEPSYIVGHVAS 280

Query: 189 KPR-----CSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLW 243
            P+         + E  + + ND F+R + W F +  ML+GS++ +F   +Y AVSL L 
Sbjct: 281 APKEQNLITLFNDGEHSQGLKND-FVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLR 339

Query: 244 DVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPA 303
           D  + +  LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++I  L+  +      
Sbjct: 340 DNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN------ 393

Query: 304 FHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVI 350
           F   V++    ++L FL+ NC ++   YWL+K++G D+++L+DL+ +
Sbjct: 394 FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTL 440

Transcription factor involved in erythroid differentiation. Involved in transcriptional activation of the globin gene.
Homo sapiens (taxid: 9606)

>sp\|Q6GQV7\|EDRF1_MOUSE Erythroid differentiation-related factor 1 OS=Mus musculus GN=Edrf1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R9R1\|EDRF1_PONAB Erythroid differentiation-related factor 1 OS=Pongo abelii GN=EDRF1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1363
359493172		1432	PREDICTED: uncharacterized protein LOC10	0.958	0.912	0.692	0.0
255571740		1420	conserved hypothetical protein [Ricinus	0.958	0.919	0.681	0.0
356502908		1462	PREDICTED: uncharacterized protein LOC10	0.988	0.922	0.659	0.0
296081137		1359	unnamed protein product [Vitis vinifera]	0.919	0.922	0.669	0.0
357439957		1433	Erythroid differentiation-related factor	0.971	0.923	0.626	0.0
449442088		1447	PREDICTED: uncharacterized protein LOC10	0.981	0.924	0.633	0.0
449490114		1450	PREDICTED: uncharacterized protein LOC10	0.981	0.922	0.632	0.0
224145179		1171	predicted protein [Populus trichocarpa]	0.851	0.990	0.686	0.0
240254207		1405	uncharacterized protein [Arabidopsis tha	0.941	0.913	0.576	0.0
8778377		1465	F15O4.11 [Arabidopsis thaliana]	0.939	0.873	0.575	0.0

>gi\|359493172\|ref\|XP_003634532.1\| PREDICTED: uncharacterized protein LOC100252053 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1813 bits (4697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 963/1390 (69%), Positives = 1093/1390 (78%), Gaps = 83/1390 (5%)

Query: 2    ADPSWEGGAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVH 61
             D  WE GA+ SNL+ K EALAVSGLVEYGDDIDVI+P DILKQIFK+PYSKA+LSI+VH
Sbjct: 97   GDLPWESGAVKSNLTSKGEALAVSGLVEYGDDIDVIAPVDILKQIFKMPYSKAQLSIAVH 156

Query: 62   RVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSE 121
            R+GQTLVLN G  +E+GEKL+RRH NQSKCADQSLFLNFAMHSVRMEACDCPPTH S SE
Sbjct: 157  RIGQTLVLNTGPGIEDGEKLVRRH-NQSKCADQSLFLNFAMHSVRMEACDCPPTHNSQSE 215

Query: 122  RQANSS-VLPG------RDA------------SNFVGQTEDVARKEGSGHFSEYPKVQQD 162
             Q NSS VLPG       D             S F    +DV++KEG  +  EY  V+Q 
Sbjct: 216  EQPNSSEVLPGLFECRAEDGLESSDYPAQGVTSQFFEPVDDVSQKEGF-NCPEYTHVKQG 274

Query: 163  SSIWDSRKNKRNKNHDPVKKASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRML 222
            +  W S+ NKR+  HD VKKAS VGEKPR S+Q+SEK+RRVGNDGF RVLFWQFHNFRML
Sbjct: 275  NFFWGSKTNKRSNGHDSVKKASQVGEKPRYSVQDSEKYRRVGNDGFSRVLFWQFHNFRML 334

Query: 223  LGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGY 282
            LGSDLLLFSNEKYVAVSLHLWDV RQVTPLTWLEAWLDNVMASVPELAICYH+NGVVQGY
Sbjct: 335  LGSDLLLFSNEKYVAVSLHLWDVTRQVTPLTWLEAWLDNVMASVPELAICYHQNGVVQGY 394

Query: 283  ELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVI 342
            ELLKTDDIFLLKGVS+DGTPAFHPHVVQQ+GLSVLRFLQENCKQDPGAYWLYKSAGEDVI
Sbjct: 395  ELLKTDDIFLLKGVSEDGTPAFHPHVVQQNGLSVLRFLQENCKQDPGAYWLYKSAGEDVI 454

Query: 343  RLFDLSVIPKNHSSSACDDSTSSLPQ-IHRGRSDSLFSLGTLLYRIAHRLSLSMASDNRA 401
            +LFDLSVIPKNHSS+ CDDS+SSLP  +HRGRSDSL SLGTLLYRIAHRLSLSMAS+NRA
Sbjct: 455  QLFDLSVIPKNHSSNDCDDSSSSLPSLVHRGRSDSLPSLGTLLYRIAHRLSLSMASNNRA 514

Query: 402  KCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAEE 461
            KCARF KKC DFLD PD LV+RAFAHEQFARLILNYEE+L+LTSE LPVE  ITVTDAEE
Sbjct: 515  KCARFFKKCFDFLDRPDLLVVRAFAHEQFARLILNYEEELDLTSEGLPVESDITVTDAEE 574

Query: 462  ESMDPFSSFSESDVH-DKDLLIVEDELSQAGMAMQDLVSEASMKMTLDENVSAPTSRKLI 520
            E +D  SS SES +H D   LI EDE S+ G   QD +SE S KMTL+EN+SA  S+KLI
Sbjct: 575  EPLDLVSSISESIIHGDIPSLIPEDEPSEEGTYFQDTISEVSSKMTLEENISA--SKKLI 632

Query: 521  APGDPEFRDQERGLPSSSADESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSL 580
            A GD    DQ   L +S  DE+FAV     TS +V+++VADPISSKLAAVHHVSQAIKSL
Sbjct: 633  ASGDTAMGDQGVVL-NSIDDENFAV-----TSAHVVQSVADPISSKLAAVHHVSQAIKSL 686

Query: 581  RWKRQLQSSEPEFINQNIRVGDTLPSP-NFSVCACGDADCIEVCDIREWLPTSKLDNKLW 639
            RWKRQL+S+EPE      R+ D  PS  NFSVCACGDADCIEVCDIREWLPT+KLD+KLW
Sbjct: 687  RWKRQLKSTEPENGEHGGRIHDRSPSSVNFSVCACGDADCIEVCDIREWLPTTKLDHKLW 746

Query: 640  KLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTKGSLSP 699
            KLVLLLGESYLALGQAYKEDGQLHQ LK VELAC+VYGSMP+H  DT FISSM   S S 
Sbjct: 747  KLVLLLGESYLALGQAYKEDGQLHQTLKVVELACAVYGSMPRHLGDTIFISSMVSTSPSQ 806

Query: 700  IVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWTLVGDVYVEFHMIKG 759
                DRR+           + SSS+D  L  ++ SS YLFWA+AWTLVGDVYVEFHMI+G
Sbjct: 807  TELNDRRE----------RLKSSSSDDGLTFDRFSSTYLFWAKAWTLVGDVYVEFHMIRG 856

Query: 760  KEISIQAERKPSTRELKMSSEVVKEVQRLKRKLGQY-QNCSSCFLVNCSCQSDRASSGSS 818
             EISIQAERKP + EL+MSSEV+KEV+RLK+KLGQY QNCSSC LVNCSCQ+DRASSGSS
Sbjct: 857  TEISIQAERKPCSGELRMSSEVMKEVKRLKKKLGQYKQNCSSCSLVNCSCQNDRASSGSS 916

Query: 819  ASSSSGDKVSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGD 878
            ASSSSGD +   YGRK +KRS++KSASYS    P    +  K +N +S ++  L+ +R D
Sbjct: 917  ASSSSGDTLPFVYGRKLSKRSYSKSASYSHVEKPDGDLIYHKVDNRRSSESQCLRHDRDD 976

Query: 879  GTLMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIFKY 938
            G +M                                  + Q + A  + PK KNGGIFKY
Sbjct: 977  GAIM----------------------------------ADQPKNALGETPKTKNGGIFKY 1002

Query: 939  LEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKE 998
               PVVGDA+ NLS+ALSCYEEA++ALG LPT SAELQSV+KKKGWVCNE+GR RLERKE
Sbjct: 1003 FGGPVVGDADYNLSAALSCYEEAIRALGELPTGSAELQSVIKKKGWVCNELGRSRLERKE 1062

Query: 999  MEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYK 1058
            +EK E AF  AINAFKEV D+ NIILINCNLGHGRRALAEEMVSK+E LK+H IF + Y 
Sbjct: 1063 LEKAEVAFVEAINAFKEVCDHMNIILINCNLGHGRRALAEEMVSKIEGLKVHAIFHDAYN 1122

Query: 1059 QALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLARE 1118
            QALETAKLEY ESLRYY AAK +L+++ EEA S ++SLR EV+TQ AHTYLRLGMLLARE
Sbjct: 1123 QALETAKLEYRESLRYYGAAKAELSAITEEADSEASSLRNEVYTQTAHTYLRLGMLLARE 1182

Query: 1119 DTTAEVYETGAWEDIS---VPCEGRT-RKELRKHEVSANDAIREALSLYESMGDLRKQEA 1174
            DT AE YE GA+ED++       GR  RK++RKHE+SANDAIR+ALSLYES+G+ RKQEA
Sbjct: 1183 DTVAEAYEKGAFEDVTTCYTSSSGRQGRKDIRKHEISANDAIRKALSLYESLGESRKQEA 1242

Query: 1175 AYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR 1234
            AYAYFQLACYQRD  LKFLESDH + NL KGENS + R++QYASLAERNWQK+ DFYGP+
Sbjct: 1243 AYAYFQLACYQRDFCLKFLESDHLEGNLLKGENSLLQRIKQYASLAERNWQKSTDFYGPK 1302

Query: 1235 SHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEGRHIS-ESCSESLSTNGSKVC 1293
            +H TMYLTILMERS LS RLS + HSNAMLE+ALS LL+GR+IS E+ S+SL    S+V 
Sbjct: 1303 THATMYLTILMERSALSLRLSSYFHSNAMLESALSRLLDGRYISGETISDSLRNLNSEVL 1362

Query: 1294 AKFWNQLQMLLKKMLATTISTSTNKSSPIGQSN-PSVRSADAGKLRELYKMSLKSTELSE 1352
            +KFW+QLQM+LK MLA  +S STN+SSP      PS R  D GKLRELYKMSL+ST+LS+
Sbjct: 1363 SKFWSQLQMILKSMLAAALSESTNRSSPAPHPGVPSNRFQDVGKLRELYKMSLQSTDLSQ 1422

Query: 1353 LPAMHALWTS 1362
            L AMH L T+
Sbjct: 1423 LHAMHKLLTA 1432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255571740\|ref\|XP_002526813.1\| conserved hypothetical protein [Ricinus communis] gi\|223533817\|gb\|EEF35548.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356502908\|ref\|XP_003520256.1\| PREDICTED: uncharacterized protein LOC100780584 [Glycine max]	Back alignment and taxonomy information

>gi\|296081137\|emb\|CBI18163.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357439957\|ref\|XP_003590256.1\| Erythroid differentiation-related factor [Medicago truncatula] gi\|355479304\|gb\|AES60507.1\| Erythroid differentiation-related factor [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449442088\|ref\|XP_004138814.1\| PREDICTED: uncharacterized protein LOC101217892 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449490114\|ref\|XP_004158512.1\| PREDICTED: uncharacterized protein LOC101229518 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224145179\|ref\|XP_002325554.1\| predicted protein [Populus trichocarpa] gi\|222862429\|gb\|EEE99935.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|240254207\|ref\|NP_174804.4\| uncharacterized protein [Arabidopsis thaliana] gi\|332193700\|gb\|AEE31821.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8778377\|gb\|AAF79385.1\|AC007887_44 F15O4.11 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1363
TAIR\|locus:2014736		1405	AT1G35660 "AT1G35660" [Arabido	0.417	0.404	0.608	2.89999999999e-313
UNIPROTKB\|Q3B7T1		1238	EDRF1 "Erythroid differentiati	0.240	0.264	0.287	1.1e-41
MGI\|MGI:1919831		1239	2700050L05Rik "RIKEN cDNA 2700	0.239	0.263	0.289	1.1e-41

TAIR\|locus:2014736 AT1G35660 "AT1G35660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1777 (630.6 bits), Expect = 2.9e-313, Sum P(2) = 2.9e-313
 Identities = 360/592 (60%), Positives = 448/592 (75%)

Query:     3 DPSWEGGAIASNLSRKCEALAVSGLVEYGDDIDVISPTDILKQIFKIPYSKARLSISVHR 62
             D S E   I SNLS+KCEALAVSGLVEYGD+IDVI+P DILKQIFKIPYSKAR+SI+V R
Sbjct:   113 DISKEANVITSNLSKKCEALAVSGLVEYGDEIDVIAPVDILKQIFKIPYSKARVSIAVQR 172

Query:    63 VGQTLVLNYGADVEEGEKLIRRHGNQSKCA---DQSLFLNFAMHSVRMEACDCPPTHQSP 119
             VGQTLVLN G DVEEGEKLIRRH NQ KC    D+SLFLNFAMHSVRMEACD PPTH+  
Sbjct:   173 VGQTLVLNPGPDVEEGEKLIRRHNNQPKCTKNVDESLFLNFAMHSVRMEACDIPPTHREH 232

Query:   120 SERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNK-NHD 178
             +E++++SS LP  + S+     + + +  GS   S+     QD  I + +K+K+NK   +
Sbjct:   233 TEKRSSSSALPAGENSHDNAPDDRLDKPAGSSKQSK-----QDGFICEKKKSKKNKAGVE 287

Query:   179 PVKKASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAV 238
             PV+K S + EK + S  +SEKH R G++ FLRVLFWQFHNFRMLLGSDLLLFSNEKYVAV
Sbjct:   288 PVRKNSQISEKIKSS-GDSEKHSRGGSNEFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAV 346

Query:   239 SLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSD 298
             SLHLWDV+ +VTPLTWLEAWLDNVMASVPELAICYHENG+VQGYELLKTDDIF+LKG+S+
Sbjct:   347 SLHLWDVSEKVTPLTWLEAWLDNVMASVPELAICYHENGIVQGYELLKTDDIFILKGISE 406

Query:   299 DGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHXXXX 358
             DGTPAFHPHVVQQ+GL+VLRFLQ NCK+DPGAYWLYKSAGED ++LFDLS+I KNH    
Sbjct:   407 DGTPAFHPHVVQQNGLAVLRFLQSNCKEDPGAYWLYKSAGEDELQLFDLSIISKNHSSSV 466

Query:   359 XXXXXXXLPQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPD 418
                       IH GRSDS+FSLG LLYR+ HRLSLS+  ++R KCARF+ +CL+ LD PD
Sbjct:   467 HNDSASSPSLIHSGRSDSMFSLGNLLYRVGHRLSLSVVPNDRNKCARFLTQCLNCLDAPD 526

Query:   419 HLVMRAFAHEQFARLILNYEEDLELTSESLPVECKITVTDAEEESMDPFSSFSESDVHDK 478
             HLV+RA+AHEQFARLILN +E+ +LT ES  V+ ++ +TD EEE++DP +    +D  ++
Sbjct:   527 HLVVRAYAHEQFARLILNSDEESDLTFESNGVQREVKITDLEEEALDPVTI---ADHENE 583

Query:   479 DLLIVEDELSQAGMAMQDLVSEASMKMTLDENVSAPTSRKLIAPGDPEFRDQERGLPSSS 538
              +   ED+ ++   ++ ++V   S++  L+ NVS    ++L+    P+  D E    +SS
Sbjct:   584 TVTFSEDKFTE-DHSVSNIVPLVSVRPKLEANVSL--CKELLHSDSPDSHDTEGSAVNSS 640

Query:   539 ADESFAVCRMSPTSTNVIETVADPISSKLAAVHHVSQAIKSLRWKRQLQSSE 590
             +D S  +  +  T+T+       PISSKL+A++HVSQAIKSLRW RQLQSSE
Sbjct:   641 SDTSLDLGTLCQTTTS-------PISSKLSAINHVSQAIKSLRWTRQLQSSE 685

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB\|Q3B7T1 EDRF1 "Erythroid differentiation-related factor 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1919831 2700050L05Rik "RIKEN cDNA 2700050L05 gene" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031829001	SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (1407 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1363
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	98.31
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.32
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.26
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	96.89
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	96.76
KOG1126		638	consensus DNA-binding cell division cycle control	96.08
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.37
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	95.15
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.55
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	94.48
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	94.4
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.39
PF09986		214	DUF2225: Uncharacterized protein conserved in bact	93.88
KOG1173		611	consensus Anaphase-promoting complex (APC), Cdc16	93.87
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	93.74
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	93.18
PRK11189		296	lipoprotein NlpI; Provisional	92.6
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	91.65
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	89.89
KOG1586		288	consensus Protein required for fusion of vesicles	88.03
PRK11788		389	tetratricopeptide repeat protein; Provisional	87.15
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	87.13
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	87.06
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	85.34
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	84.17
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	83.36
PRK15359		144	type III secretion system chaperone protein SscB;	82.51
KOG1126		638	consensus DNA-binding cell division cycle control	82.1
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	81.33
KOG1982		359	consensus Nuclear 5'-3' exoribonuclease-interactin	81.25
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	80.93

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

Probab=98.31  E-value=2.4e-06  Score=102.17  Aligned_cols=206  Identities=19%  Similarity=0.192  Sum_probs=120.8

Q ss_pred             cceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhH--------------------
Q 000667          933 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRI--------------------  992 (1363)
Q Consensus       933 GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~--------------------  992 (1363)
                      |+.|+--|         ++--||+-|++|++.       ...+....-.+|||+-|++.+                    
T Consensus       225 g~~f~~~G---------ei~~aiq~y~eAvkl-------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a  288 (966)
T KOG4626|consen  225 GCVFNAQG---------EIWLAIQHYEEAVKL-------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA  288 (966)
T ss_pred             chHHhhcc---------hHHHHHHHHHHhhcC-------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence            77887766         677899999999966       234445556789999998776                    


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 000667          993 -------RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAK 1065 (1363)
Q Consensus       993 -------rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak 1065 (1363)
                             |+||.++.-|+++|.+||..      -+|+---|||||....-.+++....           .+||||+.. -
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~V~ea~-----------~cYnkaL~l-~  350 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGSVTEAV-----------DCYNKALRL-C  350 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccchHHHH-----------HHHHHHHHh-C
Confidence                   22234444444444444432      2333334444444333332222211           566666654 3


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhh
Q 000667         1066 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKEL 1145 (1363)
Q Consensus      1066 ~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eel 1145 (1363)
                      --|-.|+.-||..++|-..+.+-. +.+. .=-+|+..||-+.-+||.+|++...+.++++-             =.|-+
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~-~ly~-~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~-------------Ykeal  415 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEAT-RLYL-KALEVFPEFAAAHNNLASIYKQQGNLDDAIMC-------------YKEAL  415 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHH-HHHH-HHHhhChhhhhhhhhHHHHHHhcccHHHHHHH-------------HHHHH
Confidence            335566666888887777665433 2332 23478999999999999999999988877650             01111


Q ss_pred             hhhcccHHHHHHHHHHHhhhcc-----hhhHHHH-------HHHHHHHhhccccc
Q 000667         1146 RKHEVSANDAIREALSLYESMG-----DLRKQEA-------AYAYFQLACYQRDC 1188 (1363)
Q Consensus      1146 eK~~Isa~Dai~eAL~lyeslG-----pL~k~rA-------A~ah~rLAs~~~d~ 1188 (1363)
                      +-. -.+-||+.+-=-+|...|     --++-||       |-||--||+.|+|.
T Consensus       416 rI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs  469 (966)
T KOG4626|consen  416 RIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS  469 (966)
T ss_pred             hcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence            111 023344433333333333     1122222       67899999999998

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function	Back alignment and domain information

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG1982 consensus Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p [Replication, recombination and repair]	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1363
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 64.9 bits (157), Expect = 2e-10
 Identities = 120/706 (16%), Positives = 214/706 (30%), Gaps = 235/706 (33%)

Query: 176 NHDPVKK---ASHVGEKPRCSIQESE-------KHRRVGNDGFLRVLFWQFHN-----FR 220
             D          V + P+  + + E       K    G       LFW   +      +
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG----TLRLFWTLLSKQEEMVQ 80

Query: 221 MLLGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGV-- 278
             +    +L  N K++   +      RQ + +T +     + + +  ++   Y+   V  
Sbjct: 81  KFVEE--VLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSR 133

Query: 279 VQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQ----SG-----LSVLRFLQENCKQDPG 329
           +Q Y  L+      L  +          +V+      SG     L V    +  CK D  
Sbjct: 134 LQPYLKLRQ----ALLELRP------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 330 AYWL----YKSAGEDVIRLFDLSV-IPKNHSSSACDDSTSSLPQIHRGRSDSLFSLGTLL 384
            +WL      S    +  L  L   I  N +S +  D +S++      R  S        
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKL----RIHS-------- 229

Query: 385 YRIAHRLSLSMASDNRAKCARFIKKCLDFLDE---PDHLVMRAFAHEQFARLILNYEEDL 441
             I   L   + S       +  + CL  L            AF                
Sbjct: 230 --IQAELRRLLKS-------KPYENCLLVLLNVQNAKAW--NAFN--------------- 263

Query: 442 ELTSESLPVECKITVTDAEEESMDPFSSFSESDVHDKDLLIVEDELSQAGMAMQDLVSEA 501
                   + CKI +T   ++  D  S+ + + +                      +   
Sbjct: 264 --------LSCKILLTTRFKQVTDFLSAATTTHI---------------------SLDHH 294

Query: 502 SMKMTLDENVSAPTSRKLIA------PGDPEFRDQERGLPSSSADESFAVCRMSPTSTNV 555
           SM +T DE       + L+       P D         LP         V   +P   ++
Sbjct: 295 SMTLTPDE------VKSLLLKYLDCRPQD---------LPRE-------VLTTNPRRLSI 332

Query: 556 I-ETVADPISS----KLAAVHHVSQAIK-SLRWKRQLQSSE-----------PEFINQNI 598
           I E++ D +++    K      ++  I+ SL     L+ +E           P   + +I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSVFPP--SAHI 387

Query: 599 RVGDTLPSPNFSVCACGDADCIEVCDIREWLPTSKLDNKLWK-LVLLLGESYLALGQAYK 657
                 P+   S+    D    +V  +   L    L  K  K   + +   YL L    +
Sbjct: 388 ------PTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 658 EDGQLHQALKTVE----LACSVYGSMPQHREDTKF----------ISSMTKGSLSPIVFT 703
            +  LH+++  V+            +     D  F          I    + +L  +VF 
Sbjct: 441 NEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 704 D----RRKM---------TGSF---VGDMKEVNSSSNDGCLNSEQLSSAYL-FWARAWTL 746
           D     +K+         +GS    +  +K       D     E+L +A L F  +    
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI--- 555

Query: 747 VGDVYVEFHMIKGKE-----ISIQAERKPSTRELKMSSEVVKEVQR 787
                 E ++I  K      I++ AE +       +  E  K+VQR
Sbjct: 556 ------EENLICSKYTDLLRIALMAEDEA------IFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1363
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	97.48
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	97.42
d2hr2a1		156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.35
d2hr2a1		156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.83
d2h6fa1		315	Protein farnesyltransferase alpha-subunit {Human (	94.69
d1zu2a1		145	Mitochondrial import receptor subunit tom20-3 {Tha	94.33
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	94.0
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.92
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	92.57
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.26
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	92.17
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	91.35
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.72
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	86.11
d1ihga1		169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	84.86
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	84.78
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	82.99
d1ya0a1		497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	81.37
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	81.26
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	80.35

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=0.00096  Score=41.82  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899899889999999987563265432402001202579998999985555554432269999999999799999999
Q 000667          993 RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESL 1072 (1363)
Q Consensus       993 rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~kAL 1072 (1363)
                      +..+++|.++..+|.+|+..+.+..++...+-.+.|+|..++-.                  ..+.+|+++    |.+|+
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~------------------~~~~~A~~~----~~~a~  104 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG------------------GNSVNAVDS----LENAI  104 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------TCHHHHHHH----HHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH------------------CCCHHHHHH----HHHHH
T ss_conf             99886999999999999999987599889999999999999980------------------885888999----99766


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCH
Q ss_conf             99999865331233310356610013578888899999998651035201332156544577776641010010101357
Q 000667         1073 RYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSA 1152 (1363)
Q Consensus      1073 ~yyg~~K~~l~~~~~~~~~~~~~LwdeV~tqlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~vIsa 1152 (1363)
                      ++|....             .+       .+.+.++.++|..+.....                       +.++. |  
T Consensus       105 ~~~~~~~-------------~~-------~~~~~~~~~l~~~~~~~~~-----------------------~~~~A-~--  138 (290)
T d1qqea_         105 QIFTHRG-------------QF-------RRGANFKFELGEILENDLH-----------------------DYAKA-I--  138 (290)
T ss_dssp             HHHHHTT-------------CH-------HHHHHHHHHHHHHHHHTTC-----------------------CHHHH-H--
T ss_pred             HHHHHCC-------------CC-------HHHHHHHHHHHHHHHHHHH-----------------------HHHHH-H--
T ss_conf             7765325-------------32-------0589999998886764787-----------------------89999-8--


Q ss_pred             HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
Q ss_conf             899999998762115-246879898999985
Q 000667         1153 NDAIREALSLYESMG-DLRKQEAAYAYFQLA 1182 (1363)
Q Consensus      1153 ~Dai~eAL~lyeslG-pL~k~rAA~ah~rLA 1182 (1363)
                       +.+++|+.+++..+ +..   ++.++..+|
T Consensus       139 -~~~~~A~~l~~~~~~~~~---~~~~~~~la  165 (290)
T d1qqea_         139 -DCYELAGEWYAQDQSVAL---SNKCFIKCA  165 (290)
T ss_dssp             -HHHHHHHHHHHHTTCHHH---HHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCHHH---HHHHHHHHH
T ss_conf             -899999999873376033---346889999

PyMOL of d1qqea_

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure