Citrus Sinensis ID: 000682

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350---
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccccccccccccccccccEEEEEccccccccccccEEEEcccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHccccccccccEEEcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHccHHHHHHccccHHcccccccccccccccHHHHHHHccccccccccccccccEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHccccccccHccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEccEEEEEHcccccccccccccEEEccccHHHHHHHcccccccccccccccccccEEEc
mkrirddvyggsqfkrplttapprgesyglspqlpgtgagggggagggggagagggsgvggggggmtagmgtsqkltTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGhnnlifgfntflpkgyeitldedeappkktvEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTrflpdtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddEKLMIKMQKEQRRRAEKEnrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasyddkdaLKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSkkslcndghvsrsvkiedkdREHKREMEVTKEKDRYKEKYYAKSIQeldlsncqrctpsyrllpddypipsasqrseLGAQVLNDHWvsvtsgsedysfkhmrrnqyeeslfrceDDRFELDMLLESVSSTAKRAEELLNSINenkitletpfhlkdHFSALNLRCIERLygdhgldvmDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNhyksldhrsfyfkqqdsknlsTKSLVAEIKQFKENKQTEDDVLFVIAAghrqpviphleygysdsnihEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFlepmlsvpsrpsdvegaedagkarhsgknnsassmvesdgspgpdgtvnsrqpissgngdentstELNNLCRTAlsngdtitkenvldsdrvyrddlscSALQLEkeqknvdisdkrsGIIIQVAVGervansdaspaigaenshgrtgsemmsaslrpcdaakddlkheanvnpvppsevtqgcdlakptllengalrdgakginyheksvgptkiekeegelspngdfeednfgvygdaavktlpkakhgvesrqyqsknekglqhqvvggendadaddedsgnasvagddasgsesagdeysreeheeeedverddvdgkaesegeadgmadqhfvggdcmslpmserfllsvkplakfvpatsveerkdcrvfygndDFYVLFRLHQTLYERIQWAKMNTTGaemkrrtskeascSDLYARFMTALYNLldgsidnakfeDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYeesrkpgkqidSVYYENARVLLHEENIYRIQLVKSFELFFFLLSsplictltyqhtrclpiVVNFTVYVTICSHCFFfffqyslgshlphlvypsslwim
mkrirddvyggsqfkrplttapprgeSYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVnkikkrfhndeHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddeklmikmqkeqrrraekenrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasydDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndlQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKslcndghvsrsvkiedkdrehkremevtkekdrykekYYAKsiqeldlsncqRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTsgsedysfkhmRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFkenkqtedDVLFVIAAghrqpvipHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDagkarhsgknnsassmvesdgspgpdGTVNSRQPISSGNGDENTSTELNNLCRTalsngdtitkenvldsdrvyRDDLSCSalqlekeqknvdisdkrsGIIIQVAVgervansdaspaiGAENSHGRTGSEMMSASLRPCDAAKDDLKHEAnvnpvppsevtqgcDLAKPTLLENgalrdgakginyheksvgptkiekeegelspngdFEEDNFGVYGDAAVKTLPKAKHgvesrqyqsknekglqhQVVGGENDADADDEDSGNasvagddasgsesagdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKfvpatsveerkdCRVFYGNDDFYVLFRLHQTLYERIQWAKmnttgaemkrrtskeaSCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEyeesrkpgkqiDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPgtgagggggagggggagagggsgvggggggmtagmgTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQrrraekenrdrrnrdqddreieHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVggendadaddedsgnasVAGDDASGSESAGdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKsfelfffllssplICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
*********************************************************************************LTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDE******KTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT*********************************************************************************************************************************DKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCN********************************KYYAKSIQELDLSNCQRCTPSYRLLPDDY***********GAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLE***********LLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFK************VAEI********TEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPM****************************************************************************IT*ENVLDSDRVYRDDLSCSAL***************SGIIIQVAVG************************************************************************************************************GVYGD*************************************************************************************************FVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWI*
********************************************************************************ALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITL************FEEAITF***********************************YSEVASLFEDHADLLEEFTRF***********************************************************************************************************************************************QGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENID******************************************************ELDLSNCQRCTPSYRLLPDD************GAQVLNDHWVSVTSGSE*****H**RNQYEESLFRCEDDRFELDMLLESVSSTAKRAEEL********************FSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQ**KNLSTKSLVAEI***************************HLEYGYSDSNIHEDLYKLVQY****************KLWTTFLEPMLSVPSRPSDVE************************************************************************************************************************************************************************************************************************************************************************************************************************************************FLLSVK************ERKDCRVFYGNDDFYVLFRLHQTLYERIQWA**********************YARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYE**************YYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQM**********IATSHADRDLSVDRPEMDDEKLMIKM*********************DREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS**************************************VNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLP*********************QVVGG*********************************************************DGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
**************************************************************************KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT****************************************************************************************************************************************IYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENI*************************************************YAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDD**F******RQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS******************************************************************************************************************************************************************************************************************************************************************************************************************************************************FLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
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MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPExxxxxxxxxxxxxxxxxxxxxxxxxxxxDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLxxxxxxxxxxxxxxxxxxxxxKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKSFELFFFLLSSPLICTLTYQHTRCLPIVVNFTVYVTICSHCFFFFFQYSLGSHLPHLVYPSSLWIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1353 2.2.26 [Sep-21-2011]
Q9LFQ31367 Paired amphipathic helix yes no 0.889 0.880 0.580 0.0
Q9SRH91372 Paired amphipathic helix no no 0.908 0.895 0.591 0.0
O045391326 Paired amphipathic helix no no 0.873 0.891 0.495 0.0
O486861330 Paired amphipathic helix no no 0.858 0.872 0.511 0.0
Q9XIE11162 Paired amphipathic helix no no 0.415 0.483 0.407 1e-128
Q9XIK61173 Paired amphipathic helix no no 0.244 0.282 0.591 1e-111
Q96ST31273 Paired amphipathic helix yes no 0.237 0.252 0.358 9e-55
Q605201274 Paired amphipathic helix yes no 0.237 0.252 0.352 1e-54
Q621411098 Paired amphipathic helix no no 0.276 0.340 0.328 3e-51
O751821162 Paired amphipathic helix no no 0.242 0.282 0.322 5e-47
>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2 Back     alignment and function desciption
 Score = 1439 bits (3725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/1318 (58%), Positives = 949/1318 (72%), Gaps = 114/1318 (8%)

Query: 1    MKRIRDDVYG-GSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGV 59
            MKRIRDD+Y  GSQFKRPL ++  RGESY  SP   G                       
Sbjct: 1    MKRIRDDIYATGSQFKRPLGSS--RGESYEQSPITGGGSI-------------------- 38

Query: 60   GGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGV 119
                     G   +QKLTT DALTYLKEVK+MFQDQR+KYDMFLEVMKDFKAQ+TDT+GV
Sbjct: 39   -------GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGV 91

Query: 120  IARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHND 179
            I+RVK+LFKGHNNLIFGFNTFLPKG+EITLD+ EAP KKTVEFEEAI+FVNKIK RF ++
Sbjct: 92   ISRVKELFKGHNNLIFGFNTFLPKGFEITLDDVEAPSKKTVEFEEAISFVNKIKTRFQHN 151

Query: 180  EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPF 239
            E VYKSFLEILNMYRK++KDI EVY+EV++LFEDH+DLLEEFTRFLPD+ A      +  
Sbjct: 152  ELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLPDSLAPHTEAQL-- 209

Query: 240  VRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            +R+  QR ++R +G P +R+M M+K RRR+R   S  DRD SVDR +++D+K M+KM ++
Sbjct: 210  LRSQAQRYDDRGSGPPLVRRMFMEKDRRRERTVASRGDRDHSVDRSDLNDDKSMVKMHRD 269

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            QR+R +K+NR+RR+RD +D E E DN     LQ F +K+KS +++EGF A S  AS+ +K
Sbjct: 270  QRKRVDKDNRERRSRDLEDGEAEQDN-----LQHFSEKRKSSRRMEGFEAYSGPASHSEK 324

Query: 360  DALKSIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418
            + LKS+YNQ F+FC+KVKE+LCS DDYQAFLKCL+++SNGII+R DLQNLV+D+LGK+ D
Sbjct: 325  NNLKSMYNQAFLFCEKVKERLCSQDDYQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384

Query: 419  LMDEFNHFFERCENIDGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKD 476
            LMDEFN FFERCE+IDGF  LAGVMSKKSL ++ ++SRSVK E+KDREHKR++E  KEK+
Sbjct: 385  LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEENLSRSVKGEEKDREHKRDVEAAKEKE 444

Query: 477  RYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGS 536
            R K+KY  KSIQELDLS+C+RCTPSYRLLP DYPIPS   R + GA VLNDHWVSVTSGS
Sbjct: 445  RSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSVTSGS 504

Query: 537  EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFH 596
            EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESV S AK AEELLN I + KI+ E  F 
Sbjct: 505  EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFEGSFR 564

Query: 597  LKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKV 656
            ++DHF+ALNLRCIERLYGDHGLDV D++RKNPA ALPV+LTRLKQKQ+EWTKCR  FN V
Sbjct: 565  IEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCREGFNVV 624

Query: 657  WAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQ 716
            WA++YAKNHYKSLDHRSFYFKQQDSKNLS K+LV+E+K  KE  Q EDDV+  I+AG+RQ
Sbjct: 625  WADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSISAGYRQ 684

Query: 717  PVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSD 776
            P+IPHLEY Y D  IHEDL+KLVQ+SCEE+CSTK+Q  K +KLW  FLE ML V  R   
Sbjct: 685  PIIPHLEYDYLDRAIHEDLFKLVQFSCEEICSTKEQTGKVLKLWANFLELMLDVAPRAKG 744

Query: 777  VEGAEDAGKARH-----SGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELN 831
             +  ED  + +H     SG+ N +S  +          ++ SRQ   + NGD + S+ ++
Sbjct: 745  SDSVEDVVETQHQRAFTSGEANESSDAI----------SLVSRQLKFATNGDVHASSGVS 794

Query: 832  NLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISD---KRSGIIIQVA 888
                T L N D+  KEN+ D D   +D  +C+    EK QK+ +I +   KRSG      
Sbjct: 795  KHGETGLLNRDSSGKENLKDGDLANKDVATCA----EKPQKDQEIGNGAAKRSG-----D 845

Query: 889  VGERVANSDASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVPPSEV 944
            V ERVA S +S   G EN++G+ GS   S S     +P +A          ++ V   + 
Sbjct: 846  VDERVATSSSSFPSGVENNNGKVGSRDSSGSRGILSKPSEA----------IDKVDSIQH 895

Query: 945  TQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDA 1004
            TQG D+ +  +L NG   D +K  + +++S GP+KIEKEEGELSP GD  EDNF VY D 
Sbjct: 896  TQGVDIGRIIVLGNGLQSDTSKANSNYDESGGPSKIEKEEGELSPVGD-SEDNFVVYEDR 954

Query: 1005 AVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAG 1064
             +K   K +H VE+     ++                       +AS AG+DASG+ES G
Sbjct: 955  ELKATAKTEHSVEAEGENDEDADDEDGD----------------DASEAGEDASGTESIG 998

Query: 1065 DEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAK 1124
            DE S++++  EE+ E D++DGKAESEGEA+GM + H +    +  P SER LLSVKPL+K
Sbjct: 999  DECSQDDNGVEEEGEHDEIDGKAESEGEAEGM-ESHLIEDKGL-FPSSERVLLSVKPLSK 1056

Query: 1125 FVPATSV--EERKDCRVFYGNDDFYVLFRLHQT------------LYERIQWAKMNTTGA 1170
             + A ++  E++KD RVFYGNDDFYVLFRLH+             LYERI  AK   +G+
Sbjct: 1057 HIAAAALVDEKKKDSRVFYGNDDFYVLFRLHRVSAIDSYDLLSHILYERILSAKTYCSGS 1116

Query: 1171 EMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYR 1230
            EMK R +K+    D YARFM AL++LL+GS +N+KFEDECRAIIGNQSYVLFTL+KL+Y+
Sbjct: 1117 EMKLRNTKDTCSPDPYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLFTLEKLIYK 1176

Query: 1231 LCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKS 1288
            L KQLQ V AD+MDNKL+QLYEYE SR+PG+  DSVYYENAR+LLHEENIYR++   S
Sbjct: 1177 LVKQLQAVVADDMDNKLLQLYEYENSRRPGRVFDSVYYENARILLHEENIYRLECSSS 1234
Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2 Back     alignment and function description
>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3 Back     alignment and function description
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3 Back     alignment and function description
>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2 Back     alignment and function description
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2 Back     alignment and function description
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3 Back     alignment and function description
>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2 Back     alignment and function description
>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1353
3594887651395 PREDICTED: paired amphipathic helix prot 0.926 0.898 0.670 0.0
2555527581289 conserved hypothetical protein [Ricinus 0.873 0.916 0.703 0.0
2960877591359 unnamed protein product [Vitis vinifera] 0.899 0.895 0.658 0.0
3565509371371 PREDICTED: paired amphipathic helix prot 0.903 0.892 0.665 0.0
3565734261383 PREDICTED: paired amphipathic helix prot 0.918 0.898 0.667 0.0
2978328041378 hypothetical protein ARALYDRAFT_477381 [ 0.906 0.889 0.597 0.0
3341876891355 paired amphipathic helix protein Sin3-li 0.889 0.888 0.585 0.0
2978116351372 hypothetical protein ARALYDRAFT_488346 [ 0.897 0.884 0.588 0.0
1453580421367 paired amphipathic helix protein Sin3-li 0.889 0.880 0.580 0.0
3574962091404 Paired amphipathic helix protein Sin3 [M 0.910 0.877 0.633 0.0
>gi|359488765|ref|XP_002281791.2| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1639 bits (4244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 870/1297 (67%), Positives = 1024/1297 (78%), Gaps = 44/1297 (3%)

Query: 1    MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVG 60
            MKR+RDD Y GSQFKRP  ++  RG+SYG  PQ+PG G GGGGG                
Sbjct: 1    MKRLRDDGYVGSQFKRPYGSS--RGDSYG-QPQIPGGGGGGGGGG--------------- 42

Query: 61   GGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVI 120
                    G G+  KLTT+DALTYLKEVK+MFQDQREKYD FLEVMKDFKAQRTDTAGVI
Sbjct: 43   -----GGGGGGSMPKLTTTDALTYLKEVKEMFQDQREKYDTFLEVMKDFKAQRTDTAGVI 97

Query: 121  ARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDE 180
            ARVK+LFKGHNNLIFGFNTFLPKGYEITL EDE PPKKTVEFEEAI FVNKIKKRF ND+
Sbjct: 98   ARVKELFKGHNNLIFGFNTFLPKGYEITLPEDEPPPKKTVEFEEAINFVNKIKKRFQNDD 157

Query: 181  HVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFV 240
            HVYKSFL+ILNMYR+E+KDI+EVY EVA LF DH DLLEEF RFLP++SA   + ++P+ 
Sbjct: 158  HVYKSFLDILNMYRRENKDIHEVYREVAVLFSDHKDLLEEFVRFLPESSAMHSAQHLPYG 217

Query: 241  RNSTQRGNERSAGIPPLRQMQMDKHR-RRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            RN+ QR +ER++  P LRQM +DK R  RD+I  SHADRD S+ R ++DD+K M+K+ KE
Sbjct: 218  RNTIQRYDERNSSTPTLRQMHVDKQRCWRDKIIPSHADRDSSIYRTDLDDDKAMMKIHKE 277

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            Q+RR EKENRDRRNRDQDDRE  H+NNRDFNLQR P+K+KS +KVEGFGAN  LASYDDK
Sbjct: 278  QKRRTEKENRDRRNRDQDDREPSHENNRDFNLQRLPEKRKSSRKVEGFGANPILASYDDK 337

Query: 360  DALKSIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418
            DALKS+ NQ FIFC+KVKEKLCS DDYQAFLKCLHIYS  II R++LQ LV DLLGKY D
Sbjct: 338  DALKSMCNQEFIFCEKVKEKLCSMDDYQAFLKCLHIYSKEIISRSELQTLVADLLGKYPD 397

Query: 419  LMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRY 478
            LMD FN F ERCENIDGFLAGVM+KKSL ++GH+SRS++ E+KD+E KREME  KEKDR 
Sbjct: 398  LMDGFNEFLERCENIDGFLAGVMNKKSLWDEGHLSRSMRAEEKDKEQKREMEGAKEKDRC 457

Query: 479  KEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSED 538
            +EKY  KSIQELDLSNC+RCTPSYRLLP+DYPI  A +RSELGAQVLND WVSVTSGSED
Sbjct: 458  REKYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTSGSED 517

Query: 539  YSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLK 598
            YSFKHMRRNQYEESLFRCEDDRFELDMLLESV+S AK AE+LLNSI++N +   +P  ++
Sbjct: 518  YSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSISDNSVG--SPIQIE 575

Query: 599  DHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWA 658
             H + LNLRCI+RLYGDH LD +D LRKN ++ALPV+L+RLKQK EEW++CRSDFNKVWA
Sbjct: 576  GHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDFNKVWA 635

Query: 659  EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPV 718
            EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIK+ KE KQ EDD+L  IAAG+R+ V
Sbjct: 636  EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEKQNEDDMLLAIAAGNRRFV 695

Query: 719  IPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVE 778
             P+LE+ YSD NIH+DLYKLVQYSCEE+C+T +QLNK M+LWTTFLEPML VPSR    E
Sbjct: 696  NPNLEFEYSDVNIHDDLYKLVQYSCEEVCTTNEQLNKVMRLWTTFLEPMLGVPSRVDREE 755

Query: 779  GAEDAGKARHSGKNNSASSMVESDGSPGPDGTV-NSRQPISSGNGDENTSTELNNLCRTA 837
            GAED  KARH    +SASS  E DGSPG +  V NS+QP  + NGDEN   E  N CR +
Sbjct: 756  GAEDVAKARHGAVKSSASSTGERDGSPGAEAAVMNSKQPNLASNGDENAIPESANSCRAS 815

Query: 838  LSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSD 897
            L NGD++ K++  DS  + +DD      +LEKE KNV  ++K SG  IQV  GE++ +S+
Sbjct: 816  LVNGDSLPKDD-HDSSHISKDD----PPRLEKELKNVAATEKISGFNIQVGSGEQLIDSN 870

Query: 898  ASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKP 953
            AS A GAEN+ GR   E+MS  +    RP + A +    EA+ +       ++G D+ + 
Sbjct: 871  ASLATGAENNLGRAHMEVMSGHVSTPSRPGNVAIE----EAHEHKPGFDASSEGGDVMRT 926

Query: 954  TLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAK 1013
             +  NG L +G K   YH +SVGP+KIEKEEGELSPNGDFEEDNF VYGDA+ + +P AK
Sbjct: 927  VISANGVLSEGTKLNKYHAESVGPSKIEKEEGELSPNGDFEEDNFVVYGDASTQAVPLAK 986

Query: 1014 HGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHE 1073
            H  E RQ+Q+ + +    QV GGEN ADADDEDS N S AG+D S SESAGDE SR E E
Sbjct: 987  HSSERRQFQAGDGQERDCQVAGGENGADADDEDSENVSEAGEDVSASESAGDECSRGEQE 1046

Query: 1074 EEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSV-- 1131
            EEED E D++DGKAESEGEADG+AD +FVGG+ + LP+SERFL +VKPLAK V A+S+  
Sbjct: 1047 EEEDAEHDELDGKAESEGEADGVADANFVGGNGVILPLSERFLPTVKPLAKHV-ASSLHD 1105

Query: 1132 EERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMT 1191
            +E+ D RVFYGND FYVLFRLH+ LYERI  AK+N+T AEMK R SK+ +  D Y+RFM+
Sbjct: 1106 KEKNDSRVFYGNDTFYVLFRLHRVLYERILSAKVNSTSAEMKWRASKDTNPPDFYSRFMS 1165

Query: 1192 ALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLY 1251
            ALYNLLDGS DNAKFED+CRAI+GNQSYVLFTLDKL+Y+L KQLQTVA DEMDNKL+QLY
Sbjct: 1166 ALYNLLDGSSDNAKFEDDCRAILGNQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLY 1225

Query: 1252 EYEESRKPGKQIDSVYYENARVLLHEENIYRIQLVKS 1288
            +YE+SR+ GK +DSVY+ENA V LH++NIYR +   S
Sbjct: 1226 DYEKSRRSGKFVDSVYHENACVFLHDDNIYRFEYSSS 1262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552758|ref|XP_002517422.1| conserved hypothetical protein [Ricinus communis] gi|223543433|gb|EEF44964.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296087759|emb|CBI35015.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550937|ref|XP_003543838.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356573426|ref|XP_003554862.1| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297832804|ref|XP_002884284.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] gi|297330124|gb|EFH60543.1| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187689|ref|NP_001190311.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi|332004723|gb|AED92106.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811635|ref|XP_002873701.1| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata] gi|297319538|gb|EFH49960.1| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145358042|ref|NP_197006.2| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi|296439819|sp|Q9LFQ3.2|SNL2_ARATH RecName: Full=Paired amphipathic helix protein Sin3-like 2 gi|332004722|gb|AED92105.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357496209|ref|XP_003618393.1| Paired amphipathic helix protein Sin3 [Medicago truncatula] gi|355493408|gb|AES74611.1| Paired amphipathic helix protein Sin3 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1353
TAIR|locus:21002771372 SNL1 "AT3G01320" [Arabidopsis 0.873 0.861 0.582 0.0
TAIR|locus:21478451367 SNL2 "AT5G15020" [Arabidopsis 0.623 0.617 0.613 2.2e-286
DICTYBASE|DDB_G02810451934 DDB_G0281045 "paired amphipath 0.244 0.171 0.365 3.4e-104
UNIPROTKB|F1SJ691227 SIN3A "Uncharacterized protein 0.218 0.241 0.367 2.8e-97
UNIPROTKB|F1MTR31274 SIN3A "Uncharacterized protein 0.218 0.232 0.367 5.7e-97
UNIPROTKB|J9P8L11274 SIN3A "Uncharacterized protein 0.218 0.232 0.367 1.7e-96
MGI|MGI:1071571274 Sin3a "transcriptional regulat 0.218 0.232 0.367 1.3e-95
RGD|13115981282 Sin3a "SIN3 transcription regu 0.218 0.230 0.367 1.4e-95
ZFIN|ZDB-GENE-070620-31276 sin3aa "SIN3 homolog A, transc 0.231 0.245 0.355 1.8e-95
UNIPROTKB|Q96ST31273 SIN3A "Paired amphipathic heli 0.218 0.232 0.367 2e-95
TAIR|locus:2100277 SNL1 "AT3G01320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3447 (1218.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 714/1225 (58%), Positives = 872/1225 (71%)

Query:    73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNN 132
             SQKLTT+DAL+YL+EVK+MFQDQREKYD FLEVMKDFKAQRTDT GVIARVK+LFKGHNN
Sbjct:    50 SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query:   133 LIFGFNTFLPKGYEITL-DEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILN 191
             LI+GFNTFLPKGYEITL +ED+A PKKTVEFE+AI FVNKIK RF +DEHVYKSFLEILN
Sbjct:   110 LIYGFNTFLPKGYEITLIEEDDALPKKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEILN 169

Query:   192 MYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIP-FVRNSTQRGNER 250
             MYRKE+K+I EVY+EV+ LF+ H DLLE+FTRFLP   A+  SH+     R+  Q+ ++R
Sbjct:   170 MYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP---ASLPSHSAAQHSRSQAQQYSDR 226

Query:   251 SAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQXXXXXXXXXX 310
              +  P L QMQ++K RRR+R      D   SV+R +++D+K M+K+Q+EQ          
Sbjct:   227 GSDPPLLHQMQVEKERRRERAVALRGD--YSVERYDLNDDKTMVKIQREQRKRLDKENRA 284

Query:   311 XXXXXXXXXXXXHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGF 370
                          DN     L  FP+K+KS ++ E   A S  AS+ +KD LKS+Y Q F
Sbjct:   285 RRGRDLDDREAGQDN-----LHHFPEKRKSSRRAEALEAYSGSASHSEKDNLKSMYKQAF 339

Query:   371 IFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFER 429
             +FC+KVK++LCS DDYQ FLKCL+I+SNGII+R DLQNLV+DLLGK+ DLMDEFN FFER
Sbjct:   340 VFCEKVKDRLCSQDDYQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQFFER 399

Query:   430 CENI-DGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKS 486
             CE+I DGF  LAGVMSKK   ++  +SR +K+E+K+ EHK E+E  KE ++ K++Y  KS
Sbjct:   400 CESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKEYMGKS 459

Query:   487 IQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRR 546
             IQELDLS+C+ CTPSYRLLP DYPIP ASQRSELGA+VLNDHWVSVTSGSEDYSFKHMRR
Sbjct:   460 IQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSFKHMRR 519

Query:   547 NQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNL 606
             NQYEESLFRCEDDRFELDMLLESVSS A+ AE LLN I E KI+    F ++DHF+ALNL
Sbjct:   520 NQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISFSGSFRIEDHFTALNL 579

Query:   607 RCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHY 666
             RCIERLYGDHGLDV+DIL KNPA ALPV+LTRLKQKQ EW KCR DF+KVWA +YAKNHY
Sbjct:   580 RCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWANVYAKNHY 639

Query:   667 KSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGY 726
             KSLDHRSFYFKQQDSKNLS KSL+AEIK+ KE  Q +DDVL  I+AG+RQP+ P+LEY Y
Sbjct:   640 KSLDHRSFYFKQQDSKNLSAKSLLAEIKELKEKSQNDDDVLLSISAGYRQPINPNLEYEY 699

Query:   727 SDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAG-K 785
              +  IHED++K+VQ+SCEE+CSTK+QL+K ++LW  FLE +L VP R    +  ED    
Sbjct:   700 LNRAIHEDMFKVVQFSCEELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTDLVEDVVIN 759

Query:   786 ARHSGKNNSASSMVESDGSPGPD-GTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTI 844
              +    N+S S   E+  S G D   + SR+  S+ NGDEN+S+         L N D+ 
Sbjct:   760 PKTLDVNHSTSPNGEAAVSSGGDTARLASRKLKSAANGDENSSSGTFKH-GIGLLNKDST 818

Query:   845 TKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGA 904
              KEN+ D +   RD ++CSA++ +KEQ+  + ++KR G  I + + ER A S  S   GA
Sbjct:   819 GKENLEDVEIANRDGVACSAVKPQKEQETGNEAEKRFGKPIPMDISERAAISSISIPSGA 878

Query:   905 ENSHGRTGSEMMSAS----LRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA 960
             EN+H   G E++  +     +P D   D + H+  V+ +     TQG D+    +L NG 
Sbjct:   879 ENNHCVVGKEVLPGAHEIQAKPSDTLTD-IHHD--VDSIETVHSTQGGDVGNSIVLANGL 935

Query:   961 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQ 1020
               D +KG    +   GP++ EKEEGELSPNGDFE DNFGVY D          HGV+S  
Sbjct:   936 RSDSSKGTRNSDDPEGPSRNEKEEGELSPNGDFE-DNFGVYKD----------HGVKST- 983

Query:  1021 YQSKNEKGLQHQVVXXXXXXXXXXXXXXXXXVAGDDASGSESAGXXXXXXXXXXXXXXXX 1080
               SK E   + +V                   A + ASG+ES G                
Sbjct:   984 --SKPENSAEAEVEADAEVENEDDADDVDSENASE-ASGTESGGDVCSQDEDREEENGEH 1040

Query:  1081 XXXXGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEER-KDCRV 1139
                 GKAESEGEA+GM D H + G+   LP SER LLSV+PL+K V A   +ER KD +V
Sbjct:  1041 DEIDGKAESEGEAEGM-DPHLLEGESELLPQSERVLLSVRPLSKHVAAVLCDERTKDLQV 1099

Query:  1140 FYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDG 1199
             FYGNDDFYVLFRLHQ LYERI +AK N +G E+K +  K+ +  D YARFM  LY LLDG
Sbjct:  1100 FYGNDDFYVLFRLHQILYERILYAKRNCSGGELKSKNLKDTNAGDPYARFMRVLYGLLDG 1159

Query:  1200 SIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKP 1259
             S +N KFEDECRAIIGNQSYVLFTLDKL+YRL KQLQ + ADEMDNKL+QLYEYE+SRKP
Sbjct:  1160 SAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLYEYEKSRKP 1219

Query:  1260 GKQIDSVYYENARVLLHEENIYRIQ 1284
             G+ IDSVYYEN RVL+HEENIYR++
Sbjct:  1220 GRVIDSVYYENVRVLVHEENIYRLE 1244
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2147845 SNL2 "AT5G15020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281045 DDB_G0281045 "paired amphipathic helix (PAH) containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8L1 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:107157 Sin3a "transcriptional regulator, SIN3A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311598 Sin3a "SIN3 transcription regulator homolog A (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LFQ3SNL2_ARATHNo assigned EC number0.58040.88980.8807yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020851001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1377 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1353
pfam08295101 pfam08295, Sin3_corepress, Sin3 family co-represso 6e-50
smart00761102 smart00761, HDAC_interact, Histone deacetylase (HD 9e-46
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 1e-44
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 6e-36
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 1e-16
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 3e-16
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 2e-10
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 8e-09
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 3e-07
pfam0717291 pfam07172, GRP, Glycine rich protein family 1e-06
pfam0717291 pfam07172, GRP, Glycine rich protein family 2e-06
pfam0717291 pfam07172, GRP, Glycine rich protein family 4e-06
pfam1348846 pfam13488, Gly-zipper_Omp, Glycine zipper 6e-06
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 2e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-05
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 2e-05
pfam0717291 pfam07172, GRP, Glycine rich protein family 3e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 3e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 3e-05
pfam13436116 pfam13436, Gly-zipper_OmpA, Glycine-zipper contain 5e-05
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 6e-05
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 6e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 7e-05
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 7e-05
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 7e-05
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 1e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 1e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 1e-04
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 1e-04
PHA00370297 PHA00370, III, attachment protein 1e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 2e-04
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 2e-04
pfam02084239 pfam02084, Bindin, Bindin 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 3e-04
pfam1043965 pfam10439, Bacteriocin_IIc, Bacteriocin class II w 3e-04
PHA00370297 PHA00370, III, attachment protein 3e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-04
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 4e-04
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 4e-04
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 4e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 5e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 6e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 6e-04
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 6e-04
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 7e-04
pfam13436116 pfam13436, Gly-zipper_OmpA, Glycine-zipper contain 8e-04
pfam0717291 pfam07172, GRP, Glycine rich protein family 0.001
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.001
pfam1344145 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper 0.001
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.001
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.001
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.001
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.002
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.002
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.002
pfam0543342 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom 0.002
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.002
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.002
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.002
pfam0957981 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (S 0.002
pfam1096191 pfam10961, DUF2763, Protein of unknown function (D 0.002
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.003
pfam1096191 pfam10961, DUF2763, Protein of unknown function (D 0.003
pfam07466280 pfam07466, DUF1517, Protein of unknown function (D 0.003
COG4371334 COG4371, COG4371, Predicted membrane protein [Func 0.003
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.004
PRK07772186 PRK07772, PRK07772, single-stranded DNA-binding pr 0.004
PRK06341166 PRK06341, PRK06341, single-stranded DNA-binding pr 0.004
>gnl|CDD|191990 pfam08295, Sin3_corepress, Sin3 family co-repressor Back     alignment and domain information 
 Score =  170 bits (434), Expect = 6e-50
 Identities = 58/96 (60%), Positives = 68/96 (70%)

Query: 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESL 553
           NC+R  PSYRLLP   P P  S R EL  +VLND WVSV + SED  FK  R+NQYEE+L
Sbjct: 1   NCERLGPSYRLLPKSEPNPPCSGRDELCKEVLNDTWVSVPTWSEDSGFKAHRKNQYEEAL 60

Query: 554 FRCEDDRFELDMLLESVSSTAKRAEELLNSINENKI 589
           FRCED+RFELDM++ES  ST K  EELLN I++   
Sbjct: 61  FRCEDERFELDMVIESNRSTIKLLEELLNKISDMSD 96

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 101
>gnl|CDD|214808 smart00761, HDAC_interact, Histone deacetylase (HDAC) interacting Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|205666 pfam13488, Gly-zipper_Omp, Glycine zipper Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|216868 pfam02084, Bindin, Bindin Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|204270 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ) Back     alignment and domain information
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763) Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763) Back     alignment and domain information
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) Back     alignment and domain information
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1353
COG56021163 SIN3 Histone deacetylase complex, SIN3 component [ 100.0
smart00761102 HDAC_interact Histone deacetylase (HDAC) interacti 100.0
PF08295101 Sin3_corepress: Sin3 family co-repressor; InterPro 100.0
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 100.0
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 99.81
COG56021163 SIN3 Histone deacetylase complex, SIN3 component [ 99.78
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.33
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.22
PTZ00146293 fibrillarin; Provisional 93.75
KOG09211282 consensus Dosage compensation complex, subunit MLE 92.63
PLN03138796 Protein TOC75; Provisional 89.48
PLN03138796 Protein TOC75; Provisional 89.02
KOG3915641 consensus Transcription regulator dachshund, conta 88.68
PHA00370297 III attachment protein 86.76
KOG3915641 consensus Transcription regulator dachshund, conta 86.35
PHA00370297 III attachment protein 81.84
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-143  Score=1264.82  Aligned_cols=824  Identities=30%  Similarity=0.463  Sum_probs=607.1

Q ss_pred             CCCCCcccccchhhHHHHHHHHHhccChHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhhhhcCCcccccc
Q 000682           69 GMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEIT  148 (1353)
Q Consensus        69 g~~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFL~IMkdfk~~rid~~gVi~rV~~LFkghpdLI~GFN~FLP~gy~I~  148 (1353)
                      .....++|+|+|||+||++||.+|..+|++|+.||+||||||++.||++|||+||+.||+|+|+||+|||+|||.||+|+
T Consensus       119 ~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie  198 (1163)
T COG5602         119 PRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIE  198 (1163)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCC--------------------------------------------CC-------------CCCcchhHHHHHHHHH
Q 000682          149 LDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVNK  171 (1353)
Q Consensus       149 l~~de--------------------------------------------qP-------------p~~~vef~~Ai~FVnK  171 (1353)
                      ++.+.                                            ||             ++..++|++||.|||+
T Consensus       199 ~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnk  278 (1163)
T COG5602         199 GSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNK  278 (1163)
T ss_pred             EecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHHH
Confidence            75210                                            10             0233679999999999


Q ss_pred             HHhhcCCChhhHHHHHHHHHHHhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccC--CCcccccCCcccCCC
Q 000682          172 IKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLS--HNIPFVRNSTQRGNE  249 (1353)
Q Consensus       172 IK~RF~~dPevYk~FLeIL~~y~~~~ksi~eVy~qVa~LFkghPDLLeEF~~FLP~~~~~~~~--~n~~~~~~~~~~~~~  249 (1353)
                      ||.||.++|+.|..||++|+.|++.+++|++||.+|+.||+++|||+++|..|||+....+.+  .++..+         
T Consensus       279 VK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~aq~p---------  349 (1163)
T COG5602         279 VKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQKP---------  349 (1163)
T ss_pred             HHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccccccCCC---------
Confidence            999999999999999999999999999999999999999999999999999999998654421  111110         


Q ss_pred             CCCCCCCccchhhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCCccchhccccCccc
Q 000682          250 RSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDF  329 (1353)
Q Consensus       250 r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~s~~~p~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~~~~~~~~~~~~~~  329 (1353)
                       ...+|+.......+.. +.++.+++.     ...|..     .           .+..+   .+.        +...++
T Consensus       350 -~~~lPPiG~Fs~p~~a-~~~~~ps~~-----~~~p~~-----~-----------~~~~~---~r~--------d~~~S~  395 (1163)
T COG5602         350 -SKRLPPIGSFSLPTAA-PEQNRPSLL-----WESPRS-----I-----------SNISR---YRA--------DLLTSF  395 (1163)
T ss_pred             -cccCCCCCCCCCCCcc-cccCChHHh-----hcCcch-----h-----------ccccc---ccc--------chhhhh
Confidence             1122322221111100 000000000     000000     0           00000   000        000000


Q ss_pred             ccccCCCCccccccccCcCCCCCCCccCchhhhhhhhcchhhhHHHHHhhcC-hHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000682          330 NLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNL  408 (1353)
Q Consensus       330 ~~q~~~~k~k~~~~~~~~~~~p~~~~~~~~~~~k~~~~eEl~FFDKVKk~L~-~~~Y~EFLKcLNLYsQeII~r~ELv~l  408 (1353)
                      ..+-.|.+.         . .|.+.          ..++.-.||++||.+|. +..|+|||||||||+|+||++++||++
T Consensus       396 s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lver  455 (1163)
T COG5602         396 SRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVER  455 (1163)
T ss_pred             hhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            011111100         0 11110          01122279999999999 999999999999999999999999999


Q ss_pred             HHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCCCcccccccchhhhhhhhhHhHhhhhhhhhhhhcccc
Q 000682          409 VTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQ  488 (1353)
Q Consensus       409 V~~fLG~~pDLm~~Fk~FLg~~e~~~g~l~g~~s~~sl~~~g~~~~~~~~e~~dr~~~~e~~~~kerdr~~ek~~~kp~~  488 (1353)
                      +-.|||.+.+||.|||.|++|.+...                   .|  +                           +..
T Consensus       456 ~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~--~---------------------------~~~  487 (1163)
T COG5602         456 LFAFLGSNEELIRWFKAFINYSEPEK-------------------EP--L---------------------------RET  487 (1163)
T ss_pred             HHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC--c---------------------------ccc
Confidence            99999999999999999999865210                   00  0                           011


Q ss_pred             ccccCCCcccCCccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhcccchhhHHHHH
Q 000682          489 ELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLL  567 (1353)
Q Consensus       489 elDls~C~r~gPSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~-t~~SED~sF~~~RKNqYEE~LfRcEDERfElDm~I  567 (1353)
                      ..||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+|
T Consensus       488 ~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~I  567 (1163)
T COG5602         488 RKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHI  567 (1163)
T ss_pred             ccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCCCCcccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHHH
Q 000682          568 ESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQK  642 (1353)
Q Consensus       568 E~~~~TI~~LE~l~~ki~~~~~e~~~~~~L~~~L----~~I~~R~I~rIYG-d~g~eVid~L~knP~~AlPVVL~RLKQK  642 (1353)
                      |++.+||+.|+.++++|..|...++..+.|.++|    .+||+++|++||| +||.+||++|+++|++|+||||+|||+|
T Consensus       568 ea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~K  647 (1163)
T COG5602         568 EATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMK  647 (1163)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHh
Confidence            9999999999999999999998888888888766    5899999999999 7999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhhccccccchhhhhhccccchHHHHHHHHHHHhhhccchhHHHhhhCCCCCCCCCc
Q 000682          643 QEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHL  722 (1353)
Q Consensus       643 ~eEWr~aq~e~nKvWrev~~KNY~KSLDHqs~~FKq~DkK~ls~K~Lv~EIe~i~eeq~~edd~l~~~a~g~~~~~~P~l  722 (1353)
                      ++|||+|+|+|||+||+|.+|||+|||||||++||+.|||.||+|.||.||+.++.++..-   ++      +....-|+
T Consensus       648 d~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fqf  718 (1163)
T COG5602         648 DEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQF  718 (1163)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Ccccccee
Confidence            9999999999999999999999999999999999999999999999999999766543211   00      11223488


Q ss_pred             eeecCChhHHHHHHHHHHHhhhccc-CCHHHHHHHHHHHHHhhhccCCCCCCCCCCcchhhhhcccCCCCCCCCCCcccc
Q 000682          723 EYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVES  801 (1353)
Q Consensus       723 ~f~y~D~~I~~D~~~Li~~~~~~~~-~s~e~~~kv~~~~~~Fv~~ff~i~~r~~~~e~~ed~~~~~~~~~~~~~~~~~~~  801 (1353)
                      .|.|+|.-|+.|++.|..-....+. -+..+++++..++..||.+||++-.     ...+..+-.... +.+.-  -+++
T Consensus       719 ~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~-----~~i~~~~y~~~~-nv~~~--ni~g  790 (1163)
T COG5602         719 VFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCI-----FRIIIIVYERLL-NVKGL--NIDG  790 (1163)
T ss_pred             eeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhh-----hhhhhhhhhhhc-ccccc--ccCC
Confidence            8999999999999999864433222 2347789999999999999999542     111111111110 00000  0000


Q ss_pred             CCCCCCCCCccCCCCCCCCCCCCCCcccccccccccccCCCccccccccccccccccccchhhhhhhhhhccccccCccc
Q 000682          802 DGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRS  881 (1353)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  881 (1353)
                                                              +.        ++|..++   .+.+|               
T Consensus       791 ----------------------------------------~k--------~~r~srs---~~~~q---------------  804 (1163)
T COG5602         791 ----------------------------------------LK--------ADRSSRS---DESAQ---------------  804 (1163)
T ss_pred             ----------------------------------------cc--------ccccccc---chhhh---------------
Confidence                                                    00        0000000   00000               


Q ss_pred             cchhhhhccccccCCCCCCccccccCCCCCCcccccCCCCCCCccccccccccCCCCCCCCCcccCCCCCccccccCccc
Q 000682          882 GIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGAL  961 (1353)
Q Consensus       882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  961 (1353)
                           -.   ..+++                                         .+++-           ++      
T Consensus       805 -----~~---s~vks-----------------------------------------gn~~q-----------vs------  818 (1163)
T COG5602         805 -----RY---SKVKS-----------------------------------------GNLEQ-----------VS------  818 (1163)
T ss_pred             -----hH---HHhhc-----------------------------------------ccchh-----------cc------
Confidence                 00   00000                                         00000           00      


Q ss_pred             ccCcccccccccCCCCCcccccccccCCCCCccccccccccccccccccccCCCcccccccccccccccccccCCCCCCC
Q 000682          962 RDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDAD 1041 (1353)
Q Consensus       962 ~~~~~~~~~~~~~~~~~~~e~eegelsp~~d~e~~nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1353)
                                       +.  +++++     +                                                
T Consensus       819 -----------------~q--~de~a-----i------------------------------------------------  826 (1163)
T COG5602         819 -----------------KQ--IDEYA-----I------------------------------------------------  826 (1163)
T ss_pred             -----------------cC--CchhH-----H------------------------------------------------
Confidence                             00  00000     0                                                


Q ss_pred             CCCCCCCCccccCCCCCCCCcCCCCCChhhhhhhhcccccccCCccccccccccccccccCCCCCCCCCchhhhcccccc
Q 000682         1042 ADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKP 1121 (1353)
Q Consensus      1042 ~ddeds~n~se~g~~~s~ses~~~e~s~e~~eee~~~~~~~~d~kaesegeaeg~~~~~~~~~d~~~l~~se~~~~~~kp 1121 (1353)
                       +||       .   -+     ...|                          .|..+.++-.|++.    -+        
T Consensus       827 -ede-------~---k~-----p~hp--------------------------d~l~eh~~skgi~e----ne--------  852 (1163)
T COG5602         827 -EDE-------I---KE-----PTHP--------------------------DGLKEHNISKGISE----NE--------  852 (1163)
T ss_pred             -HHH-------h---cC-----CCCC--------------------------chHHHhhhhhccch----hh--------
Confidence             000       0   00     0000                          00000000011110    00        


Q ss_pred             cccccCCcccccccccceeecccchhhHHHHHHHHHHHHHHHHHhchhhhhcccCCCCCCchHHHHHHHHHHHHhhcCCC
Q 000682         1122 LAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSI 1201 (1353)
Q Consensus      1122 la~~~~~~~~~~~~~~~~FygN~~~YvFfRLhqiLYeRL~~~K~~s~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG~i 1201 (1353)
                        ++         -...+||||.+.||||||+..+||||+.+|.......+-      .....-|...|.++++|+.|.+
T Consensus       853 --k~---------~i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~l  915 (1163)
T COG5602         853 --KQ---------VIALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGAL  915 (1163)
T ss_pred             --HH---------HHHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhccc
Confidence              11         112369999999999999999999999999765444321      1223489999999999999999


Q ss_pred             cchhhHHHHHhhhcCcceeeeeHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCCcc-cHHHHHHHHHhc-CCCC
Q 000682         1202 DNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQI-DSVYYENARVLL-HEEN 1279 (1353)
Q Consensus      1202 D~~~FED~~R~~fG~~aY~lFTlDKLI~~lvKqlq~i~sDe~~~ell~Ly~~Er~r~~~~~~-d~~Yr~~Ae~ll-~DeN 1279 (1353)
                      +..+||+.+|.++++++|++||||||.+.|+||+|+++.|-+...++.||...+....++.+ +++||..+|.+| .||+
T Consensus       916 ~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e~  995 (1163)
T COG5602         916 TPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDEI  995 (1163)
T ss_pred             cHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchhh
Confidence            99999999999999999999999999999999999999999999999999666555555544 667999999999 9999


Q ss_pred             eEEEEEecccceEEEe
Q 000682         1280 IYRIQLVKSFELFFFL 1295 (1353)
Q Consensus      1280 ~yRie~~~~~~~~~~~ 1295 (1353)
                      ||||+|.+..+++-|.
T Consensus       996 ~Fr~~w~~~~k~~~Iq 1011 (1163)
T COG5602         996 LFRFCWINKFKSFGIQ 1011 (1163)
T ss_pred             eeeeeecchhheeeee
Confidence            9999999999888443

>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting Back     alignment and domain information
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] Back     alignment and domain information
>PHA00370 III attachment protein Back     alignment and domain information
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] Back     alignment and domain information
>PHA00370 III attachment protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1353
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 4e-17
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 4e-06
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 9e-15
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 1e-07
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 8e-14
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 1e-07
2l9s_B94 Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex 1e-13
2f05_A105 Solution Structure Of Free Pah2 Domain Of Msin3b Le 5e-13
1g1e_B89 Nmr Structure Of The Human Mad1 Transrepression Dom 2e-12
1e91_A85 Structure Of The Complex Of The Mad1-Sin3b Interact 2e-11
2ld7_B75 Solution Structure Of The Msin3a Pah3-Sap30 Sid Com 2e-04
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 74  QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNL 133
           Q+L   DAL+YL +VK  F  Q + Y+ FL++MK+FK+Q  DT GVI+RV  LFKGH +L
Sbjct: 1   QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDL 60
Query: 134 IFGFNTFLPKG 144
           I GFNTFLP G
Sbjct: 61  IMGFNTFLPPG 71
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|2L9S|B Chain B, Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex Length = 94 Back     alignment and structure
>pdb|2F05|A Chain A, Solution Structure Of Free Pah2 Domain Of Msin3b Length = 105 Back     alignment and structure
>pdb|1G1E|B Chain B, Nmr Structure Of The Human Mad1 Transrepression Domain Sid In Complex With Mammalian Sin3a Pah2 Domain Length = 89 Back     alignment and structure
>pdb|1E91|A Chain A, Structure Of The Complex Of The Mad1-Sin3b Interaction Domains Length = 85 Back     alignment and structure
>pdb|2LD7|B Chain B, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1353
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 1e-24
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 7e-24
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 1e-10
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 5e-23
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 2e-22
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 1e-09
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.8 bits (241), Expect = 1e-24
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 10/81 (12%)

Query: 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKD----------INEVYSE 206
             +VEF  AI++VNKIK RF +   +Y+SFLEIL+ Y+KE               EV++E
Sbjct: 2   SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTE 61

Query: 207 VASLFEDHADLLEEFTRFLPD 227
           VA+LF    DLL EF +FLP+
Sbjct: 62  VANLFRGQEDLLSEFGQFLPE 82
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1353
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.79
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.77
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.67
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.66
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5e-20  Score=154.95  Aligned_cols=74  Identities=30%  Similarity=0.640  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             766551036678999998711696889999999999883179936----------6999999973069258855320398
Q 000682           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP  142 (1353)
Q Consensus        73 ~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~----------gVi~rV~~LFkghpdLI~GFNtFLP  142 (1353)
                      .+.+.++||++||++||.+|+++|++|++||+||++|+.++||++          +|++||+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP   81 (85)
T d2f05a1           2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             98643999999999999998358799999999999999861133344545677999999999998448899999997784


Q ss_pred             CCCC
Q ss_conf             4322
Q 000682          143 KGYE  146 (1353)
Q Consensus       143 ~gy~  146 (1353)
                      .||+
T Consensus        82 ~~~~   85 (85)
T d2f05a1          82 EAKR   85 (85)
T ss_dssp             GGGC
T ss_pred             CCCC
T ss_conf             6559
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure