Citrus Sinensis ID: 000683

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350---

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHccHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

cccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHEHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHcHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHcccEEEEEHHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccEcEEEEEHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHcccccccccccccccccccccccccccHHHHcccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccc

mlrlsstvPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLnlhgtglknpqlESVVASVFKYimdkpnfstvfSQSVKITEINEQLLENLSDVLnlslperigiglalsdsenldalmcgkNFCMAQIERlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS

mlrlsstvpsQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVqrsvsiatqttkelvlkvcfls

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS

***********IRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFL*

****SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGT**KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQ************MQILSLLQSKDHTQFVLNPVLPDELHDAT**RD**L************************VMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTL************LSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPY************QANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK***************************KIPVILKLLKAH***********EIEKFQAVVLDSTPRLQN*****************AEANSYFHQMFSGQLTIEAMVQM*************SIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE************************************************************************************************************************************LNIETLVAAAER**********EVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL**************************************************************************************************************TPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS

********PSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQ***********GYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSG****************************GSGITQLG**********************************LSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCFLS

*LRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ************LLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI****************************************************************************************************************************SALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLK****************************************************GPTH******APLRLSSGT***DE*LAAL*I*D*LPSAQGLF****SQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKVCF**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1353	2.2.26 [Sep-21-2011]
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.259	0.147	0.352	8e-65
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.259	0.147	0.349	2e-64
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.277	0.157	0.354	8e-62
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.172	0.098	0.457	2e-57
P87112		2100	General negative regulato	yes	no	0.160	0.103	0.385	5e-41
P25655		2108	General negative regulato	yes	no	0.189	0.121	0.314	7e-37
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.053	0.197	0.370	6e-05

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function desciption

 Score =  249 bits (637), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 219/403 (54%), Gaps = 52/403 (12%)

Query: 948  NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
            NI+TL+ A ++ E  +E P + +Q+KI+FI NN+S  N+  K +E  E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131

Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
            Y+VMKR SIEPNFH LY  FLD + +   N+ ++  TY N KVLL S+   ++  +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191

Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
            KNLG WLG +T+ +N+ +   ++D KSL++EAY KG   ++ V+PF +K+LE    SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251

Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
            +PPNPWTMAI+ +LAE++   +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R    
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311

Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
            +   S       QP+ +P +     S             PP      H ++ Y+      
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365

Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
                     LA L                                    H+ +N  +   
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382

Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
              H   ++ V  A++RA++E+V  +V RS+ IA  T +++V K
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRK 1425

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Mus musculus (taxid: 10090)

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function description

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1353
224063675		1987	predicted protein [Populus trichocarpa]	0.976	0.664	0.736	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.983	0.548	0.704	0.0
255541160		2330	ccr4-not transcription complex, putative	0.951	0.552	0.713	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.987	0.551	0.715	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.971	0.535	0.679	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.976	0.546	0.659	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.976	0.548	0.659	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.949	0.551	0.682	0.0
296084242		1496	unnamed protein product [Vitis vinifera]	0.993	0.898	0.648	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.949	0.550	0.655	0.0

>gi\|224063675\|ref\|XP_002301259.1\| predicted protein [Populus trichocarpa] gi\|222842985\|gb\|EEE80532.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2044 bits (5296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 994/1350 (73%), Positives = 1126/1350 (83%), Gaps = 29/1350 (2%)

Query: 1    MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL 60
            M+ LSSTVPSQIRFLL SLNEAN DSVFR+LCQF+EY +EGS + LQTC+D+L    T L
Sbjct: 1    MIELSSTVPSQIRFLLHSLNEANVDSVFRDLCQFMEYELEGSILTLQTCLDYLK---TDL 57

Query: 61   KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA 120
            KN  LE V+ASVFK+++DKPNF+TVF QS+K TEI E  LE LS++L LS+ E+IG GLA
Sbjct: 58   KNMHLEPVLASVFKFVLDKPNFATVFCQSLKSTEITEDFLEKLSNLLKLSVAEKIGTGLA 117

Query: 121  LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI 180
            LS+SEN D  M  K FC+A+IE LCANPVPMNS EQIQNI+MFLQRS  LSKHVD+ MQ+
Sbjct: 118  LSESENADTRMFAKKFCLAKIEELCANPVPMNSVEQIQNIVMFLQRSEGLSKHVDNFMQM 177

Query: 181  LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN 240
            LSL+QSKD   FVL P++ DEL +A  LR++DL H   D +FD ILAEME+EMS+GD++ 
Sbjct: 178  LSLMQSKDVVPFVLTPLISDELREANFLRNMDLIHGSTDSEFDAILAEMEEEMSLGDIVK 237

Query: 241  ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST 300
            ELGYGC+ D   CKEILS F PLTE+T+S+ILG IAR   GLEDNQ+TFSTF LALGC+ 
Sbjct: 238  ELGYGCTFDVLHCKEILSPFLPLTEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCNI 297

Query: 301  MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ 360
             +DLP LSSW++DVLVK IKQLAP TNWI+V+ENLD+EGFYIP EEAFSF MSVY+  CQ
Sbjct: 298  TTDLPQLSSWDIDVLVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSVYRQTCQ 357

Query: 361  EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN 420
            +PFPLHA+ GS+WKNTEGQLSFL++AV +PPEVFTFAHS RQL Y+DA+ G KLQ G +N
Sbjct: 358  DPFPLHAIYGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYIDALHGHKLQVGHSN 417

Query: 421  HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA 480
            HAW+CLDLLD+LCQL+E GHAS  RSMLEYPLK CPE+LLLGM+HINTAY+L+QYEVSF 
Sbjct: 418  HAWVCLDLLDMLCQLAERGHASSVRSMLEYPLKHCPELLLLGMSHINTAYSLLQYEVSFM 477

Query: 481  VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM 540
            VFP+IIKS   +GM+L++WH+NPN+VLRGFVDA N+EP+    IL+ CQELKILSSVL+M
Sbjct: 478  VFPLIIKSAAGSGMMLYLWHLNPNLVLRGFVDAHNVEPNIMTEILDACQELKILSSVLDM 537

Query: 541  IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF 600
            IP P  IRLA +AS+KEL+ LEKWL  NL TYKD FFEECLKF+KE+Q G SQDF+A+P 
Sbjct: 538  IPFPSGIRLAALASRKELIGLEKWLGNNLITYKDSFFEECLKFLKEIQPGGSQDFAAKPI 597

Query: 601  HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS 660
            H    ++NLY E     LK+LKAH  L+ ST+LSEE+E+    V+DS PRLQNG +ADSS
Sbjct: 598  HPQSTIVNLYSETGSSFLKVLKAHTSLVISTQLSEEMERLHVTVMDSNPRLQNGSSADSS 657

Query: 661  TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY 720
            T +G++DD+EAEANSYFHQMFSG LTI++MVQMLARFKESSVKRE  IFECMIGNLFEEY
Sbjct: 658  TPDGFSDDVEAEANSYFHQMFSGHLTIDSMVQMLARFKESSVKREQLIFECMIGNLFEEY 717

Query: 721  RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE 780
            RFFPKYPERQL+IAA+LFGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMFVFGTKALE
Sbjct: 718  RFFPKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALE 777

Query: 781  QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNP-AAHQHV 839
             FVDRLIEWPQYCNHILQISHLR THA+LVAFIERALARISSGHLESDG +N  AAH H 
Sbjct: 778  NFVDRLIEWPQYCNHILQISHLRGTHADLVAFIERALARISSGHLESDGINNASAAHHHG 837

Query: 840  SSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQ 899
             SQA S NGE +   I Q GQQLSS + LQQR ES +DD +             + ++  
Sbjct: 838  LSQAASVNGESNSINIQQAGQQLSSTLHLQQRHESSLDDLNNFYLP--------VCNLQL 889

Query: 900  PSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTS-TKFGSALNIETLVAAAER 958
            P  V  L                A  S   GF   S    S  +FGSALNIETL+AAAER
Sbjct: 890  PPQVMFL----------------AFRSYFFGFVIFSWFCPSFPRFGSALNIETLMAAAER 933

Query: 959  RETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEP 1018
            RETPIEAP SE+ DK+SF+INNIS  NVE KAKEFTEILKEQYYPWFAQYMVMKRASIEP
Sbjct: 934  RETPIEAPGSEIHDKVSFMINNISVANVEPKAKEFTEILKEQYYPWFAQYMVMKRASIEP 993

Query: 1019 NFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLT 1078
            NFHDLYLKFLDKVNSKALN+EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLT
Sbjct: 994  NFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLT 1053

Query: 1079 IGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGL 1138
            IGRNQVLRAREIDPKSLI+EAYEKGLMIAVIPFTSK+LEPCQ+SLAYQPPNPWTM ILGL
Sbjct: 1054 IGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGILGL 1113

Query: 1139 LAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQ 1198
            LAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI PTSLLKDRKREIEGNPDFSNKD+GASQ
Sbjct: 1114 LAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDIGASQ 1173

Query: 1199 PQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAAL 1258
            PQ++PEVK  I+SPL HV+LPL+ ASPPNSG   H+LSQY +P+ LSSGTLMEDEKLAAL
Sbjct: 1174 PQMLPEVKSGIISPLNHVELPLEGASPPNSGVHAHMLSQYTSPVHLSSGTLMEDEKLAAL 1233

Query: 1259 GISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIA 1318
            G+SDQLPSAQGLFQA+ SQS F  SQL T IPNIGTHVIINQKL + GLH+HFQR+VP  
Sbjct: 1234 GLSDQLPSAQGLFQATPSQSTFPASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRLVPTV 1293

Query: 1319 MDRAIKEIVSGIVQRSVSIATQTTKELVLK 1348
            MDRAIK+IVSGIVQRSVSIATQTTKELVLK
Sbjct: 1294 MDRAIKDIVSGIVQRSVSIATQTTKELVLK 1323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|296084242\|emb\|CBI24630.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1353
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.255	0.145	0.359	6.4e-140
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.213	0.121	0.418	2.3e-138
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.213	0.121	0.418	2.3e-138
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.243	0.138	0.387	3.9e-138
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.243	0.138	0.387	3.9e-138
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.243	0.138	0.387	6.4e-138
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.242	0.154	0.361	1.7e-129
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.464	0.249	0.254	7.5e-125
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.302	0.163	0.357	1.2e-109
POMBASE\|SPAC20G8.06		2100	not1 "CCR4-Not complex subunit	0.454	0.292	0.260	1.1e-79

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 586 (211.3 bits), Expect = 6.4e-140, Sum P(4) = 6.4e-140
 Identities = 130/362 (35%), Positives = 207/362 (57%)

Query:   882 VSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTST 941
             ++ A +    P     GQ S++     T++       ++ P  +        P + V  +
Sbjct:  1009 LAQAQAQSQPPKAPQPGQASTLVTTATTTTTAAKTTTITRPTAVG-------PKKDVPPS 1061

Query:   942 KFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 1001
                +  NI+TL+ A ++ E  +E P + VQ+KI+FI NN+S  N+  K +E  E +KE++
Sbjct:  1062 I--NTTNIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEF 1118

Query:  1002 YPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSS 1061
              PW +QY+VMKR SIEPNFH LY  FLD + +    + ++  TY N KVLL S+   ++ 
Sbjct:  1119 MPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANF 1178

Query:  1062 EERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPC 1119
              +RSLLKNLG WLG +T+ +N+ +   +++ KSL++EAY KG   ++ V+PF +K+LE  
Sbjct:  1179 SDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESS 1238

Query:  1120 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL--K 1177
               S+ ++P NPWTM I+ +LAE++   +LK+NLKF+IEVL KNL +D+ D+ P +LL  K
Sbjct:  1239 LRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDK 1298

Query:  1178 DRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHV-DLPLDVASPPNSGGPTHLLS 1236
             D+ + +E       K+    + +L+P V  A   P       P    +   +G PT   S
Sbjct:  1299 DKLKTLEEQLSAPKKETKPPE-ELLPIVTTADSVPFTAAPSTPATTTACTATGPPTPQFS 1357

Query:  1237 QY 1238
              +
Sbjct:  1358 YH 1359

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

POMBASE\|SPAC20G8.06 not1 "CCR4-Not complex subunit Not1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II1293	hypothetical protein (1987 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1353
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	4e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	8e-46
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	1e-12

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

 Score =  182 bits (463), Expect = 4e-46
 Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 2/213 (0%)

Query: 964  EAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL 1023
            E  A+EV   I F INN+  LN   K     E L   Y  WF+ YMV +R++ E N   L
Sbjct: 782  EGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQRSTAEENCRRL 841

Query: 1024 YLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ 1083
            Y K ++++ SK L     + T E  K+LL       S  E+ +LKNLGSWLG++T+ +N+
Sbjct: 842  YGKVVERLGSKDLYLRFSRKTLEFLKMLLDYR--CESPSEKKVLKNLGSWLGRITLAKNK 899

Query: 1084 VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIY 1143
             + + + D K  ++E+ E   ++ V+PF SK L     S+ ++PPNPW M IL LL+E++
Sbjct: 900  PITSEQFDFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELH 959

Query: 1144 SMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL 1176
            S     + LKF+IE L ++L V++  I P+  L
Sbjct: 960  SCAPRVLRLKFEIEGLLRHLNVELVPIKPSKSL 992

Length = 2005

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1353
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	93.22
KOG1831		1591	consensus Negative regulator of transcription [Tra	85.93
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	84.72

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=4.1e-143  Score=1281.88  Aligned_cols=1030  Identities=27%  Similarity=0.416  Sum_probs=768.8

Q ss_pred             CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHHhhhhhcccCC-CCCCChh---hHHHHHHHHHHhhcCC
Q 000683            6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP   80 (1353)
Q Consensus         6 ~~~~~qI~~Lv~~l~kkn~~~~~~el~qlv~-~G~ea~~~lLr~~l~~~~~~~-~~~k~~~---~~~LL~~~~~~ll~kp   80 (1353)
                      +.+-+||.+|++.|+..||++.-+||.|+++ ...+-.++++|.++.-..++- +.+|...   --++|-+||+.++.|-
T Consensus        25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr  104 (2005)
T COG5103          25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR  104 (2005)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence            4577899999999999999999999999998 999999999999994432211 1344433   4588999999999865


Q ss_pred             CccchhhhcccCC--cCCHHHHHHHHhhcCCCchhhhhhhhhhccCCChHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q 000683           81 NFSTVFSQSVKIT--EINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQ  158 (1353)
Q Consensus        81 ~f~T~lc~A~~~~--~~~~~fl~~ls~~L~Ls~~qev~~gLAL~~S~n~e~r~~a~~f~~~~i~el~~n~~~~~s~e~lh  158 (1353)
                      .     ..|+.+.  +.=++|-=+++            +||.++             .++...-.+. |...+.+-    
T Consensus       105 ~-----sD~Is~~dsevFed~~FQ~s------------iGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~----  149 (2005)
T COG5103         105 F-----SDAISGSDSEVFEDFHFQFS------------IGLTTS-------------LLKNTFQSLL-NQLSDPTQ----  149 (2005)
T ss_pred             h-----hhHhhcchhhhhcchhhhhh------------hhhhHH-------------HHHHHHHHHH-hhccchHh----
Confidence            4     5666654  22223322222            444443             2233222222 11111000    


Q ss_pred             HHHHHHhhccchhHhHHHHHHHHhhhcCCCCCCccccCCCCCCCccccccccccccccCCCCchHH-----HHHh-hhcc
Q 000683          159 NIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDD-----ILAE-MEKE  232 (1353)
Q Consensus       159 ~il~~l~~~~gls~~~~~f~~~l~~~~p~e~~p~~laPll~~~~~~~~~~r~~~~~~~~~~~~~~~-----~~~~-~~~~  232 (1353)
                                                                  ++.....++|+..++ ..|.++     .+.+ ++++
T Consensus       150 --------------------------------------------qqS~d~NDld~lr~~-~Tdydr~~f~q~i~~~Le~s  184 (2005)
T COG5103         150 --------------------------------------------QQSIDKNDLDLLREG-TTDYDRKIFRQEIKDVLEKS  184 (2005)
T ss_pred             --------------------------------------------hhhcccchHHHHhcC-CchHHHHHHHHHhHHHHHcC
Confidence                                                        000000111111111 001111     1111 0111


Q ss_pred             CcHHHHHHhhCcccccCHHHH----HHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHHhhccCCCCCCCCCCC
Q 000683          233 MSMGDVMNELGYGCSADASQC----KEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLS  308 (1353)
Q Consensus       233 ~sl~~~i~elG~~~t~s~~~c----~~~L~~~~~l~e~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~g~~~~~~~~~~~  308 (1353)
                      ..+  ... .|++ -++.+..    .++|+-.+.-.+.||||.+-.|+.-|                          ..+
T Consensus       185 ~~~--~~~-~~p~-e~~~~~l~~~l~~Il~P~~~~~~~dvar~il~~~~~~--------------------------D~~  234 (2005)
T COG5103         185 DPL--TAL-FGPR-EVDRSFLDDALQRILRPRREVVPEDVARAILFMADFP--------------------------DRG  234 (2005)
T ss_pred             Cch--hhh-cCcc-hhhHHHHHHHHHHHhCCCccCCcchHHHHHhhhhhcc--------------------------ccc
Confidence            000  000 0110 1122222    23344334577888886665555332                          235


Q ss_pred             CCCHHHHHHHHHhhCCCCCHHHHHhhcCCCCCCcCChhhHHHHHHHHhh-hcCCCccccccccccccCchh-hhHHHHHH
Q 000683          309 SWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYA  386 (1353)
Q Consensus       309 tWn~~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-QlSfl~~~  386 (1353)
                      .||.-..+.+++..+..+||.+|+.+||.+.|.|+.......++.+|-. +.+.+||.+.+|. .|||... |+++.-|.
T Consensus       235 ~w~~v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi  313 (2005)
T COG5103         235 EWNLVAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHI  313 (2005)
T ss_pred             ccchHHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheee
Confidence            6999999999999999999999999999999999977666666555554 5567999999994 8999999 55555566


Q ss_pred             hhCCCCccccCcC-ccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhhChhHHHHHHh
Q 000683          387 VASPPEVFTFAHS-ARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMA  464 (1353)
Q Consensus       387 l~~pp~~f~f~~~-~rk~v~~d~~~~~~~~~-~~~~~~W~sldLve~L~~Lae~~~~~~vr~l~e~p~k~cpellllgl~  464 (1353)
                      .+.+...|+...- +.+.|..+...+.+... ....+++||.+|++++ .+++.....-..++|   +...||++.+||.
T Consensus       314 ~s~~~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~-~l~~~p~i~y~~~lF---lN~~pE~~~a~L~  389 (2005)
T COG5103         314 ESDEKRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCI-MLGSLPLIEYIARLF---LNKSPEWCAAGLG  389 (2005)
T ss_pred             eecccchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHH-HhccchHHHHHHHHH---hccCHHHHHHHHH
Confidence            6666667877443 44555544433333222 4478999999999999 344333222233466   7889999999996


Q ss_pred             hc-----CCcchHHHHHHHHHhhHHHhc-CCCcHHHHHHHHhhChhhHHHHHHHhhhcCCchHHHHHHHHHHhhhhhhhh
Q 000683          465 HI-----NTAYNLIQYEVSFAVFPMIIK-STMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVL  538 (1353)
Q Consensus       465 qi-----~~~~~~l~~ell~~lf~~fl~-~~~~~~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll  538 (1353)
                      .+     +-.||+.+.+.+...+-+++. ..++++|+..+...+|+.++++..-...+|...++|++|+.-|+|.|+.+.
T Consensus       390 ~~~~~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~  469 (2005)
T COG5103         390 FVQPKFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVS  469 (2005)
T ss_pred             HhhhhhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhh
Confidence            65     447999999988888888886 568889999999999999999998888999999999999999999999999


Q ss_pred             ccCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhccccccccCCCCCCCccccccccch
Q 000683          539 EMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEK  613 (1353)
Q Consensus       539 ~~~p~~f~idLA~lAsrre~l~LekWL~~~l~~~~~-~----F~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~et  613 (1353)
                      |..|..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.+   ..+.+  ++..|
T Consensus       470 n~lP~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~t  544 (2005)
T COG5103         470 NLLPPEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNT  544 (2005)
T ss_pred             hcCCHHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhh
Confidence            999999999999999999999999999999987665 3    99999999999997643211111   11122  33355


Q ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHhhccCCCccCCC-CCCCC-----CCCCCchhHHHHHHHHHHHhhccccCH
Q 000683          614 IPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADSS-----TSEGYADDIEAEANSYFHQMFSGQLTI  687 (1353)
Q Consensus       614 ~~~ll~~L~~~~~~~~s~~~~e~l~~~~~~~~~~~prL~n~~-~~d~~-----~~~~~~~dVE~Ean~yfqkmY~~eisI  687 (1353)
                      +-.+|..+.....     +-.+.++.++..|++.||||++.| ++|+.     +.++++.|||+||.+|||+||+++++|
T Consensus       545 vieil~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I  619 (2005)
T COG5103         545 VIEILGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGI  619 (2005)
T ss_pred             HHHHHHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccH
Confidence            5444444433221     225778888889999999999998 66652     346899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCcccchhhHHHHHHhHHhhhccCCCCcHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHhcCCC
Q 000683          688 EAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPA  767 (1353)
Q Consensus       688 ~~ii~~L~~~k~S~~~reqdvFaCMIh~LFdEYrff~~YP~~eL~iTA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~p~  767 (1353)
                      +++|+.||+|++|++|||+|+|+|+-|.|||||+||++||.++|++|||||||||+++|+++.+|++|+|||..+++.|+
T Consensus       620 ~~~I~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~  699 (2005)
T COG5103         620 ESSINQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPE  699 (2005)
T ss_pred             HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCC
Q 000683          768 DSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGN  847 (1353)
Q Consensus       768 ~skmf~FGi~AL~qF~~RL~ewPqyC~~Ll~ip~L~~~~p~l~~~ie~~~~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~  847 (1353)
                      +||||+||+|||++|+.||++||+||+.++.||.|+. .+++|+.|-++..    ..+.       .+            
T Consensus       700 ~skmf~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~------------  755 (2005)
T COG5103         700 NSKMFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV------------  755 (2005)
T ss_pred             chhhHHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc------------
Confidence            9999999999999999999999999999999999965 8999998866531    1100       00            


Q ss_pred             CcccCCCcccccchhhhhHHhhhhccccccccccccccccCCCCCCcccCCCCCccCCCCCCcchhhhcccCCCcccccc
Q 000683          848 GEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSI  927 (1353)
Q Consensus       848 ~~~~~~~~~~~~~q~~~~~~~qq~~~~~l~~~~~~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  927 (1353)
                                                    ++       +++..|..                 |.              
T Consensus       756 ------------------------------Ek-------a~p~~pm~-----------------pl--------------  767 (2005)
T COG5103         756 ------------------------------EK-------ANPTHPML-----------------PL--------------  767 (2005)
T ss_pred             ------------------------------cc-------cCCCCccc-----------------ch--------------
Confidence                                          00       00000000                 00              


Q ss_pred             CCCccCCCCCccccccccccchhhHHHHhhcCCCCCCCCChhhhhhhhhhhhcCCcccHHHHHHHHHHHhhhcchhhhhH
Q 000683          928 SSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007 (1353)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~a~nidtl~~~~e~~~~~i~~P~e~vqdKI~FiiNNls~~Nl~~K~~El~~~L~~~y~~WFA~ 1007 (1353)
                       .-|++             +.+.        -+...|.-++++.++|+|.+||++..|+..|++|+|+-|++.|.+||+.
T Consensus       768 -~~fv~-------------~~v~--------c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~  825 (2005)
T COG5103         768 -EDFVR-------------LIVK--------CDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSI  825 (2005)
T ss_pred             -hhhhe-------------eEec--------cccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceee
Confidence             00110             0000        1112334456777779999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhHHhhhhhhhhcCccccc
Q 000683         1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRA 1087 (1353)
Q Consensus      1008 YLV~kRas~EpN~H~LY~~fld~l~~~~L~~~vl~~Ty~~i~~LL~se~~~~~s~eRslLKNLG~WLG~iTLarNkPI~~ 1087 (1353)
                      |||.+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...-  +.+|+++|||||+|||+|||||||||+|
T Consensus       826 y~vtqR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~  903 (2005)
T COG5103         826 YMVTQRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITS  903 (2005)
T ss_pred             EEEEeeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccc
Confidence            99999999999999999999999999999999999999999999986533  8899999999999999999999999999


Q ss_pred             CCCChhHHHHHHHhcCceeEEechhhhhccccCCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCc
Q 000683         1088 REIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDM 1167 (1353)
Q Consensus      1088 k~ld~K~LL~eaY~~g~L~~ViPFV~KVLe~~~~S~vFkPPNPW~m~IL~lL~Ely~~~~LKlnLKFEIEvL~K~L~ld~ 1167 (1353)
                      +++|||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++|++||||||+|+|+|++++
T Consensus       904 ~q~~Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~  983 (2005)
T COG5103         904 EQFDFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVEL  983 (2005)
T ss_pred             ccccHHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccchhhhhcCCCCCCCCccCCCCCCccCCCCccccCCCCCCCCCCccCCCCCCCCCcccccccccccccCcC
Q 000683         1168 KDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSG 1247 (1353)
Q Consensus      1168 ~di~ps~~L~~r~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 1247 (1353)
                      +.|||+..++++.-.-.        +..    +..||.    +  .+ +++|.+          +..++||.....    
T Consensus       984 ~~ikPs~~~~n~~V~ks--------~LE----ke~~Ed----v--L~-a~~~d~----------~~~~~qyi~~~s---- 1030 (2005)
T COG5103         984 VPIKPSKSLGNHLVLKS--------RLE----KELPED----V--LN-AKFPDG----------TDYLAQYIIEDS---- 1030 (2005)
T ss_pred             ccCChhhhhCcHHHHHH--------HHh----hhchHH----H--Hh-hhcccc----------chHHHHHHHHhh----
Confidence            99999999987653110        000    011110    0  00 011100          113344442100    


Q ss_pred             cchhhHHHhhccCCCCCCcccccccccCCCCCCCcccccCCCCCCCceEEecCcchhcccchhhhhHHHHHHHHhHHhhh
Q 000683         1248 TLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIV 1327 (1353)
Q Consensus      1248 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~i~~l~~~v~in~~l~~~~~~p~lk~iv~~AierAIrEII 1327 (1353)
                                                  +  .....|       +...+...|       -|.+|++.++|++.+||||+
T Consensus      1031 ----------------------------S--q~TvtD-------~va~~~g~P-------~PaiK~~~Qlal~~SVrEI~ 1066 (2005)
T COG5103        1031 ----------------------------S--QITVTD-------LVARHVGSP-------KPAIKNLTQLALDLSVREIC 1066 (2005)
T ss_pred             ----------------------------h--cchHHH-------HHHHHcCCC-------ChHHHHHHHHHHHHHHHHHH
Confidence                                        0  011111       111111122       29999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhhcccCC
Q 000683         1328 SGIVQRSVSIATQTTKELVLKVCFLS 1353 (1353)
Q Consensus      1328 ~PVVeRSVtIA~iTT~elV~KDFA~d 1353 (1353)
                      +-|||||+.||++||..|++|||||.
T Consensus      1067 ~aVVeks~gIAi~Tt~~l~~KDFa~e 1092 (2005)
T COG5103        1067 GAVVEKSCGIAIQTTMALFKKDFAME 1092 (2005)
T ss_pred             HHHHHHhccchhhHHHHHHHHHhhhc
Confidence            99999999999999999999999984

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1353
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		4e-58
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		4e-58
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		4e-37
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		2e-24

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

Iteration: 1

Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 7 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 66 Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 67 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 126 Query: 1090 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1147 +D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 127 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 186 Query: 1148 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 187 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 220

PyMOL of 4gmj

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1353
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 89.9 bits (222), Expect = 4e-18
 Identities = 109/668 (16%), Positives = 206/668 (30%), Gaps = 220/668 (32%)

Query: 5   SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQ 64
           S    S    L  +L     + V +    F+E  +  +   L   M  +    T  + P 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---MSPIK---TEQRQPS 106

Query: 65  LESVVASVFKYIMDKP-NFSTVFSQ-SV----KITEINEQLLENLSDVLNLSLPERIGIG 118
           + + +   +    D+  N + VF++ +V       ++ + LLE L    N+ +   +G G
Sbjct: 107 MMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSG 162

Query: 119 ---LALS--DSENLDALMCGKNF------------CMAQIERLCANPVPMNSAEQIQNII 161
              +AL    S  +   M  K F             +  +++L     P  ++       
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------ 216

Query: 162 MFLQRSSDLSKHVDSLMQILS-LLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDD 220
                SS++   + S+   L  LL+SK +   +L  VL   + +A +    +L       
Sbjct: 217 --SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-LNVQNAKAWNAFNL------- 264

Query: 221 DFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLT--EITLSRILGAIART 278
                                           CK IL     LT     ++  L A   T
Sbjct: 265 -------------------------------SCK-IL-----LTTRFKQVTDFLSAATTT 287

Query: 279 HAGLEDNQNTFST------FTLALGCSTMSDLP-------PLSSWNVDVLVKAIKQLAPN 325
           H  L+ +  T +           L C    DLP       P     + ++ ++I+     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRR---LSIIAESIRD-GLA 342

Query: 326 T--NWIRV------------VENLDYEGFYIPTE-----EAFSFFM-SVYKYACQEPFPL 365
           T  NW  V            +  L+      P E     +  S F  S          P 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSA-------HIPT 389

Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLC 425
             +   +W +                +V    +   +         L ++          
Sbjct: 390 ILLS-LIWFDVIKS------------DVMVVVNKLHKY-------SL-VEKQPKESTISI 428

Query: 426 LDL-LDVLCQLSEMG--HASFARSMLE-Y--PLKQCPEMLLLGMA------HINTAYNLI 473
             + L++  +L      H    RS+++ Y  P     + L+          HI   ++L 
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLK 482

Query: 474 QYEVS--FAVFPMI----------IKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCT 521
             E      +F M+          I+   +       W+     +L      +  +P   
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNA-SGSILNTLQQLKFYKP--- 532

Query: 522 IRILEICQEL-KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEEC 580
             I +   +  ++++++L+     F  ++       +  DL   L I L    +  FEE 
Sbjct: 533 -YICDNDPKYERLVNAILD-----FLPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

Query: 581 LKFVKEVQ 588
               K+VQ
Sbjct: 584 H---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1353
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	94.13
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	93.95

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.12  Score=26.18  Aligned_cols=66  Identities=18%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH
Q ss_conf             3222545242024782019998999999856--106126557777762135874048999999981873
Q 000683          968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK 1034 (1353)
Q Consensus       968 e~vqdKI~FiiNNls~~Nl~~K~~El~~~l~--~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~ 1034 (1353)
                      +++..+|..++|-||++|++.=.+|+.++-.  ++-..-+++- |.++|-.||+|-.+|.++...+...
T Consensus         9 ~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~-I~~kai~e~~f~~~YA~Lc~~l~~~   76 (243)
T d1hu3a_           9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDL-VFEKAIDEPSFSVAYANMCRCLVTL   76 (243)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999862999999999999999876689999999999-9999873863408999999999870

PyMOL of d1hu3a_

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure