Citrus Sinensis ID: 000698
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1345 | 2.2.26 [Sep-21-2011] | |||||||
| Q8QHA5 | 1053 | DNA replication ATP-depen | N/A | no | 0.681 | 0.870 | 0.356 | 1e-156 | |
| E1BMP7 | 1061 | DNA replication ATP-depen | yes | no | 0.660 | 0.836 | 0.357 | 1e-148 | |
| D3ZG52 | 1059 | DNA replication ATP-depen | yes | no | 0.671 | 0.852 | 0.355 | 1e-146 | |
| Q6ZQJ5 | 1062 | DNA replication ATP-depen | yes | no | 0.672 | 0.851 | 0.342 | 1e-146 | |
| P51530 | 1060 | DNA replication ATP-depen | yes | no | 0.660 | 0.837 | 0.355 | 1e-145 | |
| Q5ZKG3 | 992 | DNA replication ATP-depen | yes | no | 0.657 | 0.892 | 0.343 | 1e-140 | |
| P38859 | 1522 | DNA replication ATP-depen | yes | no | 0.677 | 0.598 | 0.310 | 1e-131 | |
| Q9URU2 | 1397 | DNA replication ATP-depen | yes | no | 0.669 | 0.644 | 0.331 | 1e-130 | |
| F6QXW0 | 1048 | DNA replication ATP-depen | yes | no | 0.662 | 0.850 | 0.313 | 1e-111 | |
| P38935 | 993 | DNA-binding protein SMUBP | no | no | 0.365 | 0.495 | 0.284 | 3e-46 |
| >sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 365/1025 (35%), Positives = 546/1025 (53%), Gaps = 108/1025 (10%)
Query: 385 VDAKSPYKVLRLLNEQSGEERAVH-LWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENN 443
V A+ K L + Q G++ + L +DW I PGD +++ G + R+
Sbjct: 62 VYAQREEKHLTITASQEGDDLELCILKDDWVALQIKPGDIIHLEGNCSVDNTWTISRDTG 121
Query: 444 FLIVHPDVLVSGTRVAASFSCPRRSVLDERLK-CSERSISALLGTLLHQIFQAGLMKEIP 502
+LI++PD+L+SGT +A C RRSVL E+ K C + S L GT+LH IFQ
Sbjct: 122 YLILYPDLLISGTSIANGIRCLRRSVLSEKFKVCDKGSRQMLNGTMLHDIFQRATTCGF- 180
Query: 503 TMKFLEEYARLVLQ--KNIESLYACGVNENDIHKTLVEAIPKMLNWIILFK----DSQDL 556
T L+E A + K ++ +Y +N+ D+ + E +P + W F + Q +
Sbjct: 181 TDSVLQELAHHTVHGPKYLKEMYQLKLNQADVMGEIQEYLPSLSKWATDFMTHPLNQQQI 240
Query: 557 NTPTVDFGSDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPL 616
N T D + K+SE DIEE W+P++GLKG ID + RVKI K ++ + I+PL
Sbjct: 241 NR-TKSTAGDPTETTKVSEFLDIEENIWSPRFGLKGKIDVTARVKIHQK-SKAHLKIMPL 298
Query: 617 EFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVG 676
E KTGK N S+EHR+QV+LYTLL ER + ++GLL YL++ V R D
Sbjct: 299 ELKTGKESN---SIEHRSQVVLYTLLSQERR-EDPEAGLLLYLKTGNMYTVPGNRLDRRE 354
Query: 677 LIMRRNEFANDII----------KASTTQQLPPMLRAYGGNKECSGLGN----------- 715
L+ RNE + + K +T LP M+ K CS + N
Sbjct: 355 LLKIRNELSYYLTNVLHKSDNGSKETTLASLPAMIADRQACKYCSQMRNCALYNRSVEQQ 414
Query: 716 ------------MFDSHIYHLTTAHCSFLRHWDRLIDLEA--KEMQVVKNEIWCSRGSGG 761
+ HLT H + R W + LEA K+ ++ + IW S
Sbjct: 415 TENCYIPPEMIPVVQKETEHLTEDHLQYFRLWYLMCTLEANSKDSKMGRKNIWMMSSSER 474
Query: 762 NHFTGCLSSIVLDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMD 821
C+ +++ H ++ D ++++ F R+ P N
Sbjct: 475 EEDGQCIGNLIRTG---HVQTISDVQYLHSFQRRSGSVPATN------------------ 513
Query: 822 CTLRSGDYVILSTESDRLAVASGLITEISRFHVSVSFSKPL-RLPGRNSSSDADSLLHEV 880
L SGD V++S E LA+++G I E+ +++ + L +LP + LL
Sbjct: 514 --LASGDRVVVSGEERFLALSTGYIKEVKDENITCILDRSLVKLP--------EDLL--- 560
Query: 881 WRIDKDEIMTSFSVMRYNLVQLFLQSAQSSQLRRMIVDLEAPRFDS--GSVFSQDPALSY 938
+R+D +E NL +L S+ S +LR++I+D P F S+ D
Sbjct: 561 FRLDHEEGGGGLEFHLGNLSRLMENSSVSEKLRKLIIDFSKPNFVQHLSSILPPDAKDIV 620
Query: 939 IWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTN 998
+ LN Q++A+ +VL +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+
Sbjct: 621 ASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTH 680
Query: 999 SAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQK----HCLSAMNINSVEEIKKRLDQVKVV 1054
SAVDN+L+KLK + F+R+GR + +H ++Q+ A +I S+ +++ + VV
Sbjct: 681 SAVDNILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVV 740
Query: 1055 AVTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTE 1114
A TC+G+ +P+ T ++FD CI+DEA Q + P+ LGPL FA +FVLVGDH QLPPLV+S E
Sbjct: 741 ATTCMGVNHPIFTRRRFDFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAE 800
Query: 1115 ARENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKI 1174
ARE GM SLF+RL E + +A+ L QYRM IM LSN L+Y RL C SD ++NA +
Sbjct: 801 ARELGMSESLFKRL-ERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVV 859
Query: 1175 KVSDLSSC-----------SPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
++ + + S W+K+ L P PV F+NT+ +PA E ++ ++N +EA L
Sbjct: 860 QLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKL 919
Query: 1224 IAKITQELVKNEIEGKDIGIITPYNSQANLIR---HSLSVSSVEIHTIDKYQGRDKDCIL 1280
+ +T+ +K DIGII PY Q +I +SLS S+VE++T+DKYQGRDK I+
Sbjct: 920 VFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVII 979
Query: 1281 VSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQ 1340
VSFVRS+ + + LL DW R+NVALTRAK KLIM+G TL++ L+ LI + +
Sbjct: 980 VSFVRSNIDGK--LGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTE 1037
Query: 1341 SGILN 1345
+ I +
Sbjct: 1038 NQIYD 1042
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May function in chromosomal DNA replication. Has a single-strand endonuclease activity in vitro. Has a DNA-dependent ATPase activity in vitro. Xenopus laevis (taxid: 8355) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus GN=DNA2 PE=3 SV=3 | Back alignment and function description |
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| >sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus norvegicus GN=Dna2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus GN=Dna2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens GN=DNA2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus gallus GN=DNA2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dna2 PE=1 SV=2 | Back alignment and function description |
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| >sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus tropicalis GN=dna2 PE=3 SV=1 | Back alignment and function description |
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| >sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1345 | ||||||
| 224132094 | 1152 | predicted protein [Populus trichocarpa] | 0.848 | 0.990 | 0.699 | 0.0 | |
| 359489182 | 1438 | PREDICTED: DNA2-like helicase-like [Viti | 0.895 | 0.837 | 0.639 | 0.0 | |
| 449433149 | 1379 | PREDICTED: DNA replication ATP-dependent | 0.956 | 0.932 | 0.590 | 0.0 | |
| 15221015 | 1296 | DNA replication ATP-dependent helicase D | 0.947 | 0.983 | 0.584 | 0.0 | |
| 334182404 | 1315 | DNA replication ATP-dependent helicase D | 0.947 | 0.968 | 0.576 | 0.0 | |
| 125549510 | 1269 | hypothetical protein OsI_17160 [Oryza sa | 0.851 | 0.902 | 0.540 | 0.0 | |
| 357165528 | 1281 | PREDICTED: LOW QUALITY PROTEIN: DNA2-lik | 0.845 | 0.887 | 0.539 | 0.0 | |
| 297603268 | 1287 | Os04g0588200 [Oryza sativa Japonica Grou | 0.849 | 0.888 | 0.537 | 0.0 | |
| 125591443 | 1249 | hypothetical protein OsJ_15947 [Oryza sa | 0.832 | 0.896 | 0.529 | 0.0 | |
| 414585704 | 1257 | TPA: hypothetical protein ZEAMMB73_30270 | 0.892 | 0.954 | 0.512 | 0.0 |
| >gi|224132094|ref|XP_002321254.1| predicted protein [Populus trichocarpa] gi|222862027|gb|EEE99569.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1696 bits (4393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1229 (69%), Positives = 983/1229 (79%), Gaps = 88/1229 (7%)
Query: 121 LIKLSQYDGGDEVTWNISPVNERLLAVSKQMPPENIRVLANSSRLNSLTIHQCSHNKSKQ 180
LIK SQ DGGDEVTW ISPV+ERL AVSKQMP + I++LA +S+LNS +I
Sbjct: 2 LIKQSQDDGGDEVTWKISPVSERLQAVSKQMP-QLIQLLAETSKLNSFSI---------- 50
Query: 181 PSPSPKAINRSLTTGRKRVNPCEDANLDGNGNNANYSVSSQQSPFRTPPSLSYYHDKLAN 240
G KR+NP +D NL + N S++ +QSPFRTPPSLSY H+KL+N
Sbjct: 51 -------------LGLKRINPRQDVNL----TDVNCSLAGRQSPFRTPPSLSYCHEKLSN 93
Query: 241 GVACNGASDHLGLRHTKKVLLQTYDFDDIHCLLLINSILHNTIRFISTWYIPYNLQRSFV 300
CNGASD L R
Sbjct: 94 VAECNGASDQLDQRQ--------------------------------------------- 108
Query: 301 CHHKQAFLELLDQVKDAISVDASVSSDKEAYLSKSQDKNGAGMLLEANSVVNGVPTDPPE 360
HK+A LELLDQV+DAISV+ S S + SK+QD NG M A S+V DPPE
Sbjct: 109 --HKKALLELLDQVEDAISVEDSEPSTVNS--SKTQDGNGYDMPCNAGSLVKEAAIDPPE 164
Query: 361 NVN-GTSSCHFLVLEVSEKNRPADPVDAKSPYKVLRLLNEQSGEERAVHLWEDWFHTVIA 419
+V S+ +FLVLEVSEK+RPAD A+ PYKVLRLLNEQSGEER V+LWE+WF++VI+
Sbjct: 165 SVAVPLSNYNFLVLEVSEKHRPADLSGAQCPYKVLRLLNEQSGEERTVYLWEEWFYSVIS 224
Query: 420 PGDTVNVIGEFDDQGKCDVGRENNFLIVHPDVLVSGTRVAASFSCPRRSVLDERLKCSER 479
PGDTVNVIGEFDDQGKCDV RENN LIVHPD+LVSGTRVAASFSCPRR+VLDERLKCSE
Sbjct: 225 PGDTVNVIGEFDDQGKCDVDRENNLLIVHPDILVSGTRVAASFSCPRRTVLDERLKCSEH 284
Query: 480 SISALLGTLLHQIFQAGLMKEIPTMKFLEEYARLVLQKNIESLYACGVNENDIHKTLVEA 539
S +AL+GTLLHQIFQAGLM++ PT+ FLEEYAR+VLQKNIESL+ACGVNENDI TLVEA
Sbjct: 285 STAALIGTLLHQIFQAGLMQDNPTINFLEEYARIVLQKNIESLHACGVNENDIFNTLVEA 344
Query: 540 IPKMLNWIILFKDSQDLNTPTVDFGSD-GLKKLKISEVTDIEEMAWAPKYGLKGMIDASI 598
IPK++NWI L QD P +DFG D GLKKL ISEV DIEEMAWAPKYGLKGMIDAS+
Sbjct: 345 IPKLINWINLCM--QDSKAPIIDFGLDNGLKKLSISEVIDIEEMAWAPKYGLKGMIDASV 402
Query: 599 RVKIESKRNEINGMILPLEFKTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYY 658
RVK+ES RN+ + I+PLEFKTGK SSMEH AQVILYTLLMSERYLKHIDSGLLYY
Sbjct: 403 RVKVESGRNKADEKIVPLEFKTGK-----SSMEHVAQVILYTLLMSERYLKHIDSGLLYY 457
Query: 659 LQSDQTQGVMVQRSDLVGLIMRRNEFANDIIKASTTQQLPPMLRAYGGNKECSGLGNMFD 718
LQSDQT+G+ VQRSD+VGLIMRRNE ANDI+KAS TQQLPPML+ +GG+KE SGLG++FD
Sbjct: 458 LQSDQTRGITVQRSDVVGLIMRRNELANDILKASRTQQLPPMLQVHGGSKESSGLGDLFD 517
Query: 719 SHIYHLTTAHCSFLRHWDRLIDLEAKEMQVVKNEIWCSRGSGGNHFTGCLSSIVLDASNE 778
SH++HLTTAH FLR WD+LIDLEAKE Q+VKN IW + T CLSS+VLD S+
Sbjct: 518 SHVHHLTTAHYVFLRRWDQLIDLEAKETQLVKNRIWRPHSLKSDRSTSCLSSVVLDTSDR 577
Query: 779 --HQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGDYVILSTES 836
+QKS +DNRF+Y FV + MP +++AS G+SL + +D D TL+SGDYVI+ST+
Sbjct: 578 VPYQKSLKDNRFIYRFVHKKMPLHDVHASGGESLSFPSSSAEDFDYTLKSGDYVIISTKF 637
Query: 837 DRLAVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFSVMR 896
R VASG IT+ISR HVSVSF K LRLPG NSSS+A L EVW+IDKDE MTSFSVMR
Sbjct: 638 GRQTVASGFITDISRSHVSVSFPKHLRLPGSNSSSEAHDLFREVWQIDKDEFMTSFSVMR 697
Query: 897 YNLVQLFLQSAQSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKSLNDDQRRAIIKV 956
+NLVQLFLQS QSS LR+MIVDLEAPRFDSG +FSQDPALSYIWS K+LN DQRRAI+K
Sbjct: 698 FNLVQLFLQSEQSSHLRKMIVDLEAPRFDSGCIFSQDPALSYIWSVKNLNGDQRRAILKT 757
Query: 957 LTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSAVDNLLIKLKSQSIDFV 1016
LTAKDYALILGMPGTGKTST+VHAVKA+LMRGASILLTSYTNSA+DNLLIKLK+Q IDF+
Sbjct: 758 LTAKDYALILGMPGTGKTSTLVHAVKAMLMRGASILLTSYTNSAIDNLLIKLKAQGIDFL 817
Query: 1017 RIGRHEVVHKEIQKHCLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLLTDKKFDVCIM 1076
RIGRHEVVH+E++ +C+SAM+++SVE+IK RL+QVKVVAVTCLGI++PLL +KKFDVCIM
Sbjct: 818 RIGRHEVVHEEVRANCVSAMDVHSVEDIKLRLEQVKVVAVTCLGISSPLLANKKFDVCIM 877
Query: 1077 DEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAI 1136
DEAGQ TLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGM ISLF RLSE HPQAI
Sbjct: 878 DEAGQITLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAI 937
Query: 1137 SALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSPWLKEALNPCRPV 1196
SALQSQYRMCQ IMELSNALIYGDRL CGS EIANA++K S L SCS WLKE LNP RPV
Sbjct: 938 SALQSQYRMCQDIMELSNALIYGDRLRCGSSEIANARLKFSGLQSCSSWLKEVLNPGRPV 997
Query: 1197 IFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRH 1256
IF+NTDMLPAYEAKD +T+NNP+EA ++A++T+EL+ N I G DIGIITPYNSQANLIR
Sbjct: 998 IFINTDMLPAYEAKDSKTVNNPIEAYIVAEVTKELLNNGIVGDDIGIITPYNSQANLIRA 1057
Query: 1257 SLSVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLI 1316
S++V+SVEIHTIDKYQGRDK+CILVSF RSSENPRNCTSSLLGDWHRINVALTRAKKKLI
Sbjct: 1058 SVNVTSVEIHTIDKYQGRDKECILVSFARSSENPRNCTSSLLGDWHRINVALTRAKKKLI 1117
Query: 1317 MVGSCRTLSKVPLLKLLINKVGEQSGILN 1345
+VGSC+TLSKVPLLKLL+ KV EQSGI+N
Sbjct: 1118 LVGSCKTLSKVPLLKLLVEKVEEQSGIIN 1146
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489182|ref|XP_002265239.2| PREDICTED: DNA2-like helicase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449433149|ref|XP_004134360.1| PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2-like [Cucumis sativus] gi|449518346|ref|XP_004166203.1| PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15221015|ref|NP_172361.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gi|332190235|gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334182404|ref|NP_001184943.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gi|332190236|gb|AEE28357.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|125549510|gb|EAY95332.1| hypothetical protein OsI_17160 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|357165528|ref|XP_003580414.1| PREDICTED: LOW QUALITY PROTEIN: DNA2-like helicase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
| >gi|297603268|ref|NP_001053694.2| Os04g0588200 [Oryza sativa Japonica Group] gi|32488773|emb|CAE04326.1| OSJNBb0016D16.17 [Oryza sativa Japonica Group] gi|255675733|dbj|BAF15608.2| Os04g0588200 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|125591443|gb|EAZ31793.1| hypothetical protein OsJ_15947 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|414585704|tpg|DAA36275.1| TPA: hypothetical protein ZEAMMB73_302708 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1345 | ||||||
| UNIPROTKB|J3KPX5 | 1146 | DNA2 "DNA replication ATP-depe | 0.377 | 0.443 | 0.417 | 9e-139 | |
| UNIPROTKB|P51530 | 1060 | DNA2 "DNA replication ATP-depe | 0.377 | 0.479 | 0.417 | 9e-139 | |
| UNIPROTKB|Q8QHA5 | 1053 | dna2 "DNA replication ATP-depe | 0.684 | 0.873 | 0.356 | 3.1e-138 | |
| UNIPROTKB|F6UZP1 | 1021 | DNA2 "Uncharacterized protein" | 0.391 | 0.515 | 0.411 | 1.5e-136 | |
| UNIPROTKB|E2QSH2 | 1040 | E2QSH2 "Uncharacterized protei | 0.387 | 0.500 | 0.413 | 1.7e-136 | |
| ZFIN|ZDB-GENE-090313-71 | 1378 | dna2 "DNA replication helicase | 0.697 | 0.680 | 0.347 | 2.9e-131 | |
| UNIPROTKB|E1BMP7 | 1061 | DNA2 "DNA replication ATP-depe | 0.675 | 0.855 | 0.351 | 8.1e-131 | |
| UNIPROTKB|K7DXW3 | 1137 | DNA2 "DNA replication nuclease | 0.675 | 0.798 | 0.351 | 8.1e-131 | |
| MGI|MGI:2443732 | 1062 | Dna2 "DNA replication helicase | 0.707 | 0.895 | 0.346 | 7.3e-130 | |
| UNIPROTKB|Q5ZKG3 | 992 | DNA2 "DNA replication ATP-depe | 0.582 | 0.790 | 0.342 | 2.3e-129 |
| UNIPROTKB|J3KPX5 DNA2 "DNA replication ATP-dependent helicase/nuclease DNA2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 9.0e-139, Sum P(3) = 9.0e-139
Identities = 227/544 (41%), Positives = 313/544 (57%)
Query: 824 LRSGDYVILSTESDRL-AVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWR 882
L +GD VI+S E L A++ G + EI+ V+ L RN S +S L +R
Sbjct: 598 LMAGDRVIVSGEERSLFALSRGYVKEINMTTVTC-------LLDRNLSVLPESTL---FR 647
Query: 883 IDKDEIMTSFSVMRYNXXXXXXXXXXXXXXRRMIVDLEAPRFDS--GSVFSQDPALSYIW 940
+D++E N R +I+D P+F S SV D +
Sbjct: 648 LDQEEKNCDIDTPLGNLSKLMENTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVAC 707
Query: 941 SEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNSA 1000
K LN QR+A+ KVL +KDY LI+GMPGTGKT+T+ V+ L G S+LLTSYT+SA
Sbjct: 708 ILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSA 767
Query: 1001 VDNLLIKLKSQSIDFVRIGRHEVVHKEIQKH-----CLSAMNINSVEEIKKRLDQVKVVA 1055
VDN+L+KL I F+R+G+ + VH IQ+ C S +I S+ +++ + +VA
Sbjct: 768 VDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSK-SIKSLALLEELYNSQLIVA 826
Query: 1056 VTCLGITNPLLTDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEA 1115
TC+GI +P+ + K FD CI+DEA Q + P+ LGPL F+ +FVLVGDH QLPPLV + EA
Sbjct: 827 TTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREA 886
Query: 1116 RENGMEISLFRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIK 1175
R GM SLF+RL E++ A+ L QYRM IM LSN L Y +L CGSD++ANA I
Sbjct: 887 RALGMSESLFKRL-EQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVIN 945
Query: 1176 V---SDLS---------SCSPWLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACL 1223
+ D+ S +PWL P PV F+NTD +PA E + ++N EA L
Sbjct: 946 LRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKL 1005
Query: 1224 IAKITQELVKNEIEGKDIGIITPYNSQANLIRHSL--SVSSVEIHTIDKYQGRDKDCILV 1281
I +T VK DIGII PY Q +I L S+ VE++T+DKYQGRDK +LV
Sbjct: 1006 IVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLV 1065
Query: 1282 SFVRSSENPRNCTSSLLGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQS 1341
SFVRS+++ LL DW R+NVA+TRAK KLI++G +L+ P L+ L+N + +
Sbjct: 1066 SFVRSNKD--GTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEK 1123
Query: 1342 GILN 1345
I++
Sbjct: 1124 LIID 1127
|
|
| UNIPROTKB|P51530 DNA2 "DNA replication ATP-dependent helicase/nuclease DNA2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8QHA5 dna2 "DNA replication ATP-dependent helicase/nuclease DNA2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6UZP1 DNA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QSH2 E2QSH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-090313-71 dna2 "DNA replication helicase 2 homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BMP7 DNA2 "DNA replication ATP-dependent helicase/nuclease DNA2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7DXW3 DNA2 "DNA replication nuclease DNA2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443732 Dna2 "DNA replication helicase 2 homolog (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZKG3 DNA2 "DNA replication ATP-dependent helicase/nuclease DNA2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
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 | gw1.XIV.4178.1 | hypothetical protein (1152 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.V.2541.1 | • | • | • | • | 0.653 | |||||
 | gw1.XIII.413.1 | • | • | • | 0.490 | ||||||
 | gw1.IX.5004.1 | • | • | • | 0.426 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1345 | |||
| pfam08696 | 209 | pfam08696, Dna2, DNA replication factor Dna2 | 3e-74 | |
| pfam13087 | 195 | pfam13087, AAA_12, AAA domain | 8e-61 | |
| COG1112 | 767 | COG1112, COG1112, Superfamily I DNA and RNA helica | 2e-54 | |
| TIGR00376 | 637 | TIGR00376, TIGR00376, DNA helicase, putative | 2e-54 | |
| pfam13086 | 220 | pfam13086, AAA_11, AAA domain | 3e-50 | |
| TIGR00376 | 637 | TIGR00376, TIGR00376, DNA helicase, putative | 4e-22 | |
| pfam13604 | 195 | pfam13604, AAA_30, AAA domain | 5e-11 | |
| pfam13245 | 73 | pfam13245, AAA_19, Part of AAA domain | 3e-09 | |
| cd09637 | 178 | cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas sys | 2e-08 | |
| TIGR00372 | 178 | TIGR00372, cas4, CRISPR-associated protein Cas4 | 2e-06 | |
| COG0210 | 655 | COG0210, UvrD, Superfamily I DNA and RNA helicases | 6e-06 | |
| pfam12705 | 201 | pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfami | 2e-05 | |
| TIGR01447 | 586 | TIGR01447, recD, exodeoxyribonuclease V, alpha sub | 5e-05 | |
| pfam00580 | 267 | pfam00580, UvrD-helicase, UvrD/REP helicase N-term | 3e-04 |
| >gnl|CDD|219974 pfam08696, Dna2, DNA replication factor Dna2 | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 3e-74
Identities = 88/209 (42%), Positives = 128/209 (61%), Gaps = 1/209 (0%)
Query: 394 LRLLNEQSGEERAVHLWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENNFLIVHPDVLV 453
L + +E SGE+R V L W T + PGD +++IGEFD G V ++N LI+HPD LV
Sbjct: 1 LLVCDESSGEKRTVILRGPWVETPVEPGDIIHLIGEFDGDGPYIVDDDSNLLILHPDFLV 60
Query: 454 SGTRVAASFSCPRRSVLDERLKCS-ERSISALLGTLLHQIFQAGLMKEIPTMKFLEEYAR 512
SGT VA+S CPRR+VL ER K S E S L+GT++H+IFQ L ++FLEE
Sbjct: 61 SGTSVASSIQCPRRAVLQERFKGSGEPSKPMLIGTIVHEIFQEALRANDFDLEFLEELLD 120
Query: 513 LVLQKNIESLYACGVNENDIHKTLVEAIPKMLNWIILFKDSQDLNTPTVDFGSDGLKKLK 572
VL+K +E LY G +++++ + ++E +P + W + + G+ + L
Sbjct: 121 AVLEKYLEELYLLGESQDEVREEVMEHLPAIEGWAEQYVKKSPSSESISVSGTGEKETLS 180
Query: 573 ISEVTDIEEMAWAPKYGLKGMIDASIRVK 601
IS++ DIEE W+P+YGLKG IDA++ VK
Sbjct: 181 ISKLLDIEENIWSPRYGLKGKIDATVEVK 209
|
Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways. Length = 209 |
| >gnl|CDD|221913 pfam13087, AAA_12, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|224037 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative | Back alignment and domain information |
|---|
| >gnl|CDD|221912 pfam13086, AAA_11, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative | Back alignment and domain information |
|---|
| >gnl|CDD|222258 pfam13604, AAA_30, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|187768 cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4 | Back alignment and domain information |
|---|
| >gnl|CDD|232944 TIGR00372, cas4, CRISPR-associated protein Cas4 | Back alignment and domain information |
|---|
| >gnl|CDD|223288 COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|221726 pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|233417 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >gnl|CDD|216004 pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1345 | |||
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 100.0 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 100.0 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 100.0 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 100.0 | |
| PF08696 | 209 | Dna2: DNA replication factor Dna2; InterPro: IPR01 | 100.0 | |
| COG1112 | 767 | Superfamily I DNA and RNA helicases and helicase s | 100.0 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 100.0 | |
| KOG1804 | 775 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| PF13087 | 200 | AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP | 99.97 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 99.97 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 99.96 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 99.96 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 99.96 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 99.96 | |
| KOG1801 | 827 | consensus tRNA-splicing endonuclease positive effe | 99.96 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 99.96 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 99.94 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 99.93 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 99.93 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 99.92 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 99.91 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 99.9 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 99.89 | |
| KOG1806 | 1320 | consensus DEAD box containing helicases [Replicati | 99.89 | |
| TIGR00609 | 1087 | recB exodeoxyribonuclease V, beta subunit. All pro | 99.89 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 99.87 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 99.87 | |
| PRK13909 | 910 | putative recombination protein RecB; Provisional | 99.87 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 99.86 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 99.81 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 99.74 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 99.73 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 99.72 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 99.71 | |
| PRK10876 | 1181 | recB exonuclease V subunit beta; Provisional | 99.69 | |
| TIGR00372 | 178 | cas4 CRISPR-associated protein Cas4. This model re | 99.65 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 99.63 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 99.62 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 99.61 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 99.56 | |
| PF01930 | 162 | Cas_Cas4: Domain of unknown function DUF83; InterP | 99.56 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 99.53 | |
| COG0507 | 696 | RecD ATP-dependent exoDNAse (exonuclease V), alpha | 99.51 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 99.32 | |
| PF13361 | 351 | UvrD_C: UvrD-like helicase C-terminal domain; PDB: | 99.25 | |
| TIGR01896 | 271 | cas_AF1879 CRISPR-associated protein, Csa1 family. | 99.25 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 99.24 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 99.16 | |
| COG1468 | 190 | CRISPR-associated protein Cas4 (RecB family exonuc | 99.06 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 99.02 | |
| PHA00619 | 201 | CRISPR-associated Cas4-like protein | 99.02 | |
| PF12705 | 257 | PDDEXK_1: PD-(D/E)XK nuclease superfamily; PDB: 1W | 98.98 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.83 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 98.71 | |
| PHA01622 | 204 | CRISPR-associated Cas4-like protein | 98.67 | |
| PF06023 | 289 | DUF911: Archaeal protein of unknown function (DUF9 | 98.65 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.47 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.43 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.41 | |
| TIGR02773 | 1158 | addB_Gpos ATP-dependent nuclease subunit B. DNA re | 98.41 | |
| PF13538 | 104 | UvrD_C_2: UvrD-like helicase C-terminal domain; PD | 98.35 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 98.27 | |
| KOG2108 | 853 | consensus 3'-5' DNA helicase [Replication, recombi | 98.2 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.18 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.17 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 98.07 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.05 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.04 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.98 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.98 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 97.95 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 97.9 | |
| PTZ00424 | 401 | helicase 45; Provisional | 97.9 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 97.88 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 97.87 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 97.85 | |
| TIGR03623 | 874 | probable DNA repair protein. Members of this prote | 97.84 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 97.8 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 97.76 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.76 | |
| COG4343 | 281 | CRISPR-associated protein, RecB family exonuclease | 97.76 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 97.75 | |
| PTZ00110 | 545 | helicase; Provisional | 97.73 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.71 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 97.69 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 97.66 | |
| KOG1804 | 775 | consensus RNA helicase [RNA processing and modific | 97.65 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 97.65 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.64 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.64 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 97.64 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 97.6 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.58 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.57 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.57 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 97.56 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.56 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 97.55 | |
| TIGR02786 | 1021 | addB_alphas double-strand break repair protein Add | 97.55 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 97.54 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.54 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.51 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 97.51 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 97.48 | |
| TIGR02774 | 1076 | rexB_recomb ATP-dependent nuclease subunit B. DNA | 97.47 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 97.43 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.41 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 97.41 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.4 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 97.4 | |
| TIGR02773 | 1158 | addB_Gpos ATP-dependent nuclease subunit B. DNA re | 97.38 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 97.38 | |
| PRK13909 | 910 | putative recombination protein RecB; Provisional | 97.38 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.37 | |
| PRK08181 | 269 | transposase; Validated | 97.37 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.37 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.34 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 97.33 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.32 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.32 | |
| KOG2108 | 853 | consensus 3'-5' DNA helicase [Replication, recombi | 97.31 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.3 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.29 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.27 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 97.26 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 97.26 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 97.25 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.25 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.24 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 97.23 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.22 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.22 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.2 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.19 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.17 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.17 | |
| PRK06526 | 254 | transposase; Provisional | 97.17 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.14 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.07 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.06 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.04 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.01 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 97.01 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 96.99 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 96.98 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 96.96 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 96.93 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.93 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 96.93 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 96.91 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 96.9 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.89 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.88 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 96.86 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.85 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 96.84 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.81 | |
| PRK10876 | 1181 | recB exonuclease V subunit beta; Provisional | 96.8 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 96.78 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.78 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.77 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 96.76 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 96.75 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.75 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.7 | |
| KOG0987 | 540 | consensus DNA helicase PIF1/RRM3 [Cell cycle contr | 96.67 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 96.64 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.64 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.6 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 96.6 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.56 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 96.55 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 96.52 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 96.47 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.41 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 96.4 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.38 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 96.36 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 96.35 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 96.34 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.34 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.34 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.32 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 96.31 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 96.26 | |
| PRK08727 | 233 | hypothetical protein; Validated | 96.26 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.25 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 96.25 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 96.25 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 96.25 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 96.24 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.2 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 96.18 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.12 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 96.12 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.1 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 96.07 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 96.05 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 96.05 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.05 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 96.02 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 96.01 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 95.93 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.93 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 95.92 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 95.92 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 95.91 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.89 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 95.89 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 95.88 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 95.84 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 95.82 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 95.81 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.81 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 95.78 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 95.77 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 95.76 | |
| PF10926 | 372 | DUF2800: Protein of unknown function (DUF2800); In | 95.74 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 95.73 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 95.72 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 95.71 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 95.71 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 95.66 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.65 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 95.63 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.61 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.61 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.6 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 95.58 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 95.56 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 95.55 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 95.53 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 95.47 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.47 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 95.46 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 95.46 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 95.46 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 95.44 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 95.4 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 95.4 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 95.39 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 95.38 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 95.36 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 95.36 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.34 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 95.3 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 95.3 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 95.29 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 95.28 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.28 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 95.27 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 95.26 | |
| PF12684 | 237 | DUF3799: PDDEXK-like domain of unknown function (D | 95.26 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 95.23 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 95.22 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 95.2 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 95.2 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 95.19 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.19 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 95.17 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 95.13 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 95.11 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 95.06 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 95.06 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 95.02 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 94.99 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 94.98 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 94.98 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 94.96 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 94.9 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 94.88 | |
| TIGR02774 | 1076 | rexB_recomb ATP-dependent nuclease subunit B. DNA | 94.88 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 94.85 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 94.84 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 94.84 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 94.79 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 94.73 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.73 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 94.73 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 94.72 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 94.72 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 94.7 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.66 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 94.63 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 94.59 | |
| PRK06851 | 367 | hypothetical protein; Provisional | 94.57 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 94.55 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 94.55 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 94.55 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 94.54 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 94.5 | |
| PF02374 | 305 | ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ | 94.5 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 94.41 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 94.37 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 94.34 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 94.32 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 94.3 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 94.26 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 94.26 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 94.24 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 94.24 | |
| PF05729 | 166 | NACHT: NACHT domain | 94.24 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 94.24 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 94.23 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 94.22 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 94.16 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 94.14 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 94.13 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 94.11 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 94.11 | |
| COG0003 | 322 | ArsA Predicted ATPase involved in chromosome parti | 94.1 | |
| COG2887 | 269 | RecB family exonuclease [DNA replication, recombin | 94.09 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 94.08 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 94.07 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 94.06 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.02 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 93.98 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 93.97 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 93.96 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 93.93 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 93.93 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 93.91 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 93.88 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 93.88 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 93.88 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 93.87 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 93.86 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 93.83 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 93.83 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 93.8 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.78 | |
| PHA00350 | 399 | putative assembly protein | 93.78 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 93.78 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 93.73 | |
| PRK13768 | 253 | GTPase; Provisional | 93.73 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 93.71 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 93.71 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 93.69 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 93.66 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 93.57 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 93.49 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 93.48 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 93.47 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 93.47 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 93.43 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 93.41 | |
| PRK06851 | 367 | hypothetical protein; Provisional | 93.39 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 93.37 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 93.36 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.32 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 93.31 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 93.29 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 93.26 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 93.19 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 93.15 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 93.11 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 93.1 | |
| PF00265 | 176 | TK: Thymidine kinase; InterPro: IPR001267 Thymidin | 93.09 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 93.07 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 92.98 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 92.96 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 92.92 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.84 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 92.84 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 92.83 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 92.82 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 92.77 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 92.69 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 92.67 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 92.66 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 92.65 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 92.57 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 92.49 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 92.48 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 92.47 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 92.47 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 92.45 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 92.42 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 92.38 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 92.36 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 92.34 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 92.33 | |
| TIGR00041 | 195 | DTMP_kinase thymidylate kinase. Function: phosphor | 92.3 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 92.3 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 92.27 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 92.25 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 92.25 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 92.23 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 92.2 | |
| PRK07667 | 193 | uridine kinase; Provisional | 92.19 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 92.15 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 92.13 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 92.12 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 92.09 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 92.08 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 92.06 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 92.05 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 92.04 | |
| cd02034 | 116 | CooC The accessory protein CooC, which contains a | 91.95 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 91.93 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 91.92 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 91.89 | |
| PRK13973 | 213 | thymidylate kinase; Provisional | 91.89 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 91.88 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 91.86 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 91.85 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 91.83 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 91.83 | |
| cd01672 | 200 | TMPK Thymidine monophosphate kinase (TMPK), also k | 91.82 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 91.78 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 91.76 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 91.73 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 91.72 | |
| PRK13764 | 602 | ATPase; Provisional | 91.7 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 91.68 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 91.58 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 91.56 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 91.51 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 91.49 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 91.48 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 91.45 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 91.44 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 91.44 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 91.42 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 91.41 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 91.4 | |
| PRK06696 | 223 | uridine kinase; Validated | 91.33 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 91.31 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 91.3 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 91.23 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 91.22 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 91.22 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 91.22 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 91.2 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 91.18 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 91.13 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 91.06 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 91.05 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 91.01 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 90.99 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 90.97 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 90.96 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 90.94 | |
| PRK03839 | 180 | putative kinase; Provisional | 90.88 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 90.84 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 90.83 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 90.77 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 90.74 | |
| PHA02244 | 383 | ATPase-like protein | 90.74 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 90.72 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 90.69 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 90.62 | |
| PHA03311 | 828 | helicase-primase subunit BBLF4; Provisional | 90.56 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 90.55 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 90.51 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 90.5 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 90.39 | |
| TIGR03575 | 340 | selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti | 90.37 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 90.35 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 90.28 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 90.24 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 90.22 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 90.22 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 90.19 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 90.18 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 90.15 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 90.08 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 90.07 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 89.93 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 89.85 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 89.82 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 89.81 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 89.77 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 89.73 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 89.7 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 89.7 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 89.7 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 89.69 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 89.66 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 89.61 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 89.6 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 89.57 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 89.56 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 89.48 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 89.47 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.44 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 89.41 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 89.31 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 89.31 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 89.29 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 89.27 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 89.26 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 89.24 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 89.24 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 89.22 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 89.21 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 89.18 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 89.1 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 89.09 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 89.02 |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-188 Score=1681.02 Aligned_cols=1031 Identities=39% Similarity=0.600 Sum_probs=888.2
Q ss_pred CCCCCCCCccccccccCccccCCCCCccCcccccccccccccccchhhhhhhhcccccceecccccccccccccccccch
Q 000698 224 PFRTPPSLSYYHDKLANGVACNGASDHLGLRHTKKVLLQTYDFDDIHCLLLINSILHNTIRFISTWYIPYNLQRSFVCHH 303 (1345)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1345)
++|+|++.+..|.+.+++|+|.+..+.+|+++ +
T Consensus 1 ~~~~~~~k~~~~~~~~~tv~~~~~~g~~~~~~-----------------------------------------------~ 33 (1100)
T KOG1805|consen 1 MGRKPSVKSAPEKEDPRTVDRKIKRGNQGAGS-----------------------------------------------T 33 (1100)
T ss_pred CCCCccccccccccCccchhhhhhhhcccccc-----------------------------------------------c
Confidence 68999999999999999999999999999999 7
Q ss_pred hHHHHHHHHHHhhhhccccccCCCcccccccccCCCCcccccccccccCCCCCCCCC-CcCCCCcceEEEE--EeecccC
Q 000698 304 KQAFLELLDQVKDAISVDASVSSDKEAYLSKSQDKNGAGMLLEANSVVNGVPTDPPE-NVNGTSSCHFLVL--EVSEKNR 380 (1345)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~lv~--~v~e~~~ 380 (1345)
+.|+.+.+++.|+.+..++.+.+.....+...++......-..-.-...+...+.|. ..+.....+|.++ .+...+.
T Consensus 34 ~~~~~~~i~~~en~~~s~~~~~~~~~~~l~e~~~e~e~~~~~~~~~~d~~~iss~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (1100)
T KOG1805|consen 34 KSALPGDILKNENHDESDDMPQDKTSELLDETRGEVELIDYSDDDDFDEPVISSDPRIINDDSEDSYFPELCDVVNNVHL 113 (1100)
T ss_pred ccccccchhhhcccCcccccchhhhhhhchhhhccccchhccchhhhcccccccCcccccCccccccccceeeEEeeecc
Confidence 777788888888888777777766665555555544331111111122223333444 4566788888433 3333322
Q ss_pred CCCCCCCCCCceEEEEEec-cCCceeEEEEecCcccccCCCCCEEEEeecccCCCceeecCCCcEEEEeCCccccccccc
Q 000698 381 PADPVDAKSPYKVLRLLNE-QSGEERAVHLWEDWFHTVIAPGDTVNVIGEFDDQGKCDVGRENNFLIVHPDVLVSGTRVA 459 (1345)
Q Consensus 381 ~~~~~~~~~~~k~L~~~~~-~~~~~~~v~Lrd~W~~t~v~~GDiIhiig~~~~~~~~ivd~~~n~LIl~PD~LIS~T~Va 459 (1345)
. .-.|+ ++-.++++.+. ..|.+..|+||++|+++++++||+||+||+|+.++.|+||+++||+|+|||.|||||+||
T Consensus 114 ~-~~~~~-k~~~~~~le~~d~~g~~~~~~l~~~W~~~s~e~Gd~I~lig~~~~d~~~vvD~d~g~lIl~PD~Lis~TtVa 191 (1100)
T KOG1805|consen 114 R-SRKGE-KRCCVLRLECGDDEGTTLDVYLRDEWEEMSMEVGDTINLIGAKDSDKTFVVDDDNGLLILHPDDLISGTTVA 191 (1100)
T ss_pred c-ccccc-cceeeeehhccCCCCceEEEEEecCceeecccCCceEEeeecccCCCcEEEeCCCCeEEecCCccccccchh
Confidence 1 11122 22233444333 345688899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHhccc-ccccchhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhHHHHHhcCCCHHHHHHHHHH
Q 000698 460 ASFSCPRRSVLDERLKCS-ERSISALLGTLLHQIFQAGLMKEIPTMKFLEEYARLVLQKNIESLYACGVNENDIHKTLVE 538 (1345)
Q Consensus 460 ~s~~C~RRaVL~erfk~~-~~s~~ml~GtIvHelfQ~al~~~~~~~~~L~~~~~~~l~~~l~~Ly~~~~~~~~~~~~l~~ 538 (1345)
+|++|+||+||++||++. +++++|++||||||+||+||.++.+..+.++..+...+.+|+++||+||+++++++.++.+
T Consensus 192 sS~~C~Rr~VL~erfr~~n~~t~~mllGtIvHevfQ~al~qk~~~~~~~~~~~~~q~~~~~s~l~~~~~~~~~i~~el~~ 271 (1100)
T KOG1805|consen 192 SSLFCLRRTVLNERFRSGNSHTKAMLLGTIVHEVFQKALIQKSFAVDELILQASLQISKYISELYALGVSEDVIRNELEK 271 (1100)
T ss_pred hccccchHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 999999999999999985 5567999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCccccCCCCccccccchhhhhhhhcccccCCceeeeceEEEEeeecccccCCCeEEEEEE
Q 000698 539 AIPKMLNWIILFKDSQDLNTPTVDFGSDGLKKLKISEVTDIEEMAWAPKYGLKGMIDASIRVKIESKRNEINGMILPLEF 618 (1345)
Q Consensus 539 ~~p~i~~w~~~f~~~~~~~~~~~~~~~~~~~~~~Is~vlDIEEnIwSp~~GLKGkID~tv~~~i~~~~~~~~~~i~PlEl 618 (1345)
|+|+|..|+++|++++.++......++...+.+.|++|+|||||||||+|||||+|||||+++++++ .+.+||||+
T Consensus 272 ~l~~i~~~i~~f~~~~~s~~~~s~~~~~~~~~i~i~ev~DIEEniWsp~fGLKG~iDatv~v~v~~~----~eti~PLEl 347 (1100)
T KOG1805|consen 272 YLPNICLWIEHFVHKPLSGSFPSKRGPLPSKSIQISEVIDIEENIWSPKFGLKGKIDATVRVKVEEG----KETIMPLEL 347 (1100)
T ss_pred HHHHHHHHHHHhhcccccCCcchhcCCCCCCceeeeeeeehhhhhcccccCCcceeeeEEEEEEccC----cccccceee
Confidence 9999999999999999888888877776666799999999999999999999999999999999986 445999999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHHHhhcCCCCeeEEEEeccCceeeeeCChhHHHHHHHHHHHHHHHHHhcc------
Q 000698 619 KTGKIPNGQSSMEHRAQVILYTLLMSERYLKHIDSGLLYYLQSDQTQGVMVQRSDLVGLIMRRNEFANDIIKAS------ 692 (1345)
Q Consensus 619 KTGk~~~~~~~~~H~~Ql~lY~LLl~ery~~~v~~GlL~Y~k~~~~~~V~~~~~elr~li~~RN~la~~i~~~s------ 692 (1345)
||||++. +++|++|++|||||++|||+.++..|+|||++++++++|+..++|+|+|||+||+||..+....
T Consensus 348 KTGk~~~---sieh~~QvlLYtLl~seRy~~~~~~glL~YLk~~~~~~v~~~~~dlr~LL~~RN~lA~~~~h~~~~~~s~ 424 (1100)
T KOG1805|consen 348 KTGKSSS---SIEHVGQVLLYTLLLSERYEIPILPGLLYYLKDGQLVEVPSKHSDLRGLLMLRNRLANDLVHQEDVSASA 424 (1100)
T ss_pred ecCCccc---chHHHHHHHHHHHHHHhhccCCcccceEEEecCCCEeecccchHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 9999986 7999999999999999999999999999999999999999999999999999999997765321
Q ss_pred CCCCCCCcccccCCCccCCCc--------------------ccchhHhhhhhhhhhhHHHHHHHHHHHHHHHHH----HH
Q 000698 693 TTQQLPPMLRAYGGNKECSGL--------------------GNMFDSHIYHLTTAHCSFLRHWDRLIDLEAKEM----QV 748 (1345)
Q Consensus 693 ~~~~LPp~~~~~~g~~~cs~l--------------------~~~~~~~t~HL~~~h~~yf~~w~~Li~lE~~~~----~~ 748 (1345)
+...+|+++..+.-|..|+.. ..++++.+.||.+.|.+|+.+|..++.+|+++. ..
T Consensus 425 ~~~~lpe~~~~d~~C~~cs~~~~c~~~~~~~d~~~~~s~~~~~~~e~~~~hl~q~~~~y~~~w~~~l~le~~~~~~~~~~ 504 (1100)
T KOG1805|consen 425 QGGNLPEPILEDSSCDHCSHKTACSFFQKLEDQLDASSGEEKRLAEEEIAHLSQNHLEYLAGWTLLLGLESKNEHNRLLS 504 (1100)
T ss_pred ccCCCCCccccccccchHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhhhhhhhc
Confidence 123689999877777777532 236788999999999999999999999999833 23
Q ss_pred HHhhhhcccCCCcccccccceeEEEcccccccccccCCcEEEEEecccCCCCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 000698 749 VKNEIWCSRGSGGNHFTGCLSSIVLDASNEHQKSYRDNRFVYHFVRQHMPSPNLNASDGDSLIGAAIPTKDMDCTLRSGD 828 (1345)
Q Consensus 749 ~~~eiw~~~~~~re~~g~c~~~l~l~~~~~~~~~~~~~~~~y~F~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD 828 (1345)
.+..+|++...|+|+.|+|++++.+..... .+...+.|+|.|.+...... + .+.|..||
T Consensus 505 ~~~~~~~k~~~e~~~~g~~l~~L~~~~~~e--~~~~~~~~~~~~~~~~~~~~---------------~----~s~~~~gd 563 (1100)
T KOG1805|consen 505 QNLDFWLKGIIEEEREGRCLSRLSVVSPEE--HEETEGVYIYAFDCFLRAGN---------------S----VSLFHAGD 563 (1100)
T ss_pred cccceeeccHHHHhhcCcceeceeecccee--eEeecceeeehhhhhhccCC---------------c----ccccccCc
Confidence 457799999999999999999998754332 34567899999876542110 0 25789999
Q ss_pred EEEEeeCCCc-ceeEEEEEEEEeceEEEEEeccCCCCCCCCCCcccccccceeEEEecccchhhHHHHHHHHHHHHhhcc
Q 000698 829 YVILSTESDR-LAVASGLITEISRFHVSVSFSKPLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFSVMRYNLVQLFLQSA 907 (1345)
Q Consensus 829 ~V~is~e~~~-~~~~~G~V~~i~~~~I~V~l~~~l~~p~~~~~~~~~~~~~~~~ridkde~~~~~~~~r~nL~~L~~~~~ 907 (1345)
+|+||++.++ ++++.|.+..+....+....++ ..+..+..++|||||++++.+++++|.||..||.++.
T Consensus 564 ~v~iS~e~~~~i~~~~~~~~~~~~~~l~~~~~~----------~~~s~~~~el~ridK~d~~ss~s~~r~nL~~l~~~~~ 633 (1100)
T KOG1805|consen 564 RVIISSEEGHGIGLAMIKVVLINRLRLDRSTPK----------DEQSVLEEELFRIDKEDIMSSASTKRGNLMSLLLNDE 633 (1100)
T ss_pred eEEEecCccceeEeeeeeeecchhhhccccCCc----------chhhccccceeeccHHhhhhhhhhhhhhHHHHhcCCc
Confidence 9999998875 4566666655544433333332 2233445678999999999999999999999999988
Q ss_pred chhhHHHhhccCCCCccCCCCCCCCCccccccccCCCCCHHHHHHHHHHHhcCCeEEEEccCCCChHHHHHHHHHHHHhc
Q 000698 908 QSSQLRRMIVDLEAPRFDSGSVFSQDPALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVHAVKALLMR 987 (1345)
Q Consensus 908 ~~~~lR~liid~~~P~f~~~~~~~~~~~~~~~~~~~~LN~eQ~~AI~~~l~~~d~~LI~GpPGTGKTttIa~lI~~Ll~~ 987 (1345)
.+..+|++|+|++||+|.........|++.++ .+..||.+|++|+.+++.+++|++|.|||||||||||+.+|+.|+..
T Consensus 634 ~~~~lRdlivd~~pP~f~~~~~~~~~p~~~~~-~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~ 712 (1100)
T KOG1805|consen 634 GGKILRDLIVDLKPPKFVDALSKVLIPKIKKI-ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL 712 (1100)
T ss_pred cchhHHHHhhhcCCchhhcccccccCchhhHH-HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc
Confidence 88999999999999999876555556665554 57899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCcEEEEcccchhhHHHHHhh-hcccccccHHHHHHhhccccEEEEEecccccccc
Q 000698 988 GASILLTSYTNSAVDNLLIKLKSQSIDFVRIGRHEVVHKEIQKHC-LSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLL 1066 (1345)
Q Consensus 988 gkkVLvtA~TnsAVDnLl~kL~~~~l~ilRiG~~~~v~~~v~~~~-l~~~~~~s~~~i~~~l~~~~VV~tT~~~~~~~ll 1066 (1345)
|++||++||||+|||||+.||...++.++|+|..+++|+++++++ .......+++++++.+++..||++||.|+++++|
T Consensus 713 gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf 792 (1100)
T KOG1805|consen 713 GKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF 792 (1100)
T ss_pred CCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh
Confidence 999999999999999999999999999999999999999999999 4555678999999999999999999999999999
Q ss_pred cCCCCCEEEEeCCCCCCHHHHhhhhcccCeEEEEcCCCCCCccccchHHHhcCCcchHHHHHHHhCCcceecccccccCc
Q 000698 1067 TDKKFDVCIMDEAGQTTLPVSLGPLMFASKFVLVGDHYQLPPLVQSTEARENGMEISLFRRLSEEHPQAISALQSQYRMC 1146 (1345)
Q Consensus 1067 ~~~~FD~VIVDEASQitep~~L~pL~~a~k~VLVGDh~QLPPvV~s~~a~~~Gl~~SLFerL~~~~p~~v~~Lt~QYRm~ 1146 (1345)
.+++|||||||||||+.+|.+|+||..+.||||||||+||||+|++.+|+..|++.|||+||.+.||++|..|+.|||||
T Consensus 793 ~~R~FD~cIiDEASQI~lP~~LgPL~~s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn 872 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQILLPLCLGPLSFSNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMN 872 (1100)
T ss_pred hccccCEEEEccccccccchhhhhhhhcceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCcCCCCchhhhhhhc--------cccCCCCCchhhhhhcCCCCCEEEEeCCCCccccc-cccCCCCC
Q 000698 1147 QGIMELSNALIYGDRLSCGSDEIANAKI--------KVSDLSSCSPWLKEALNPCRPVIFVNTDMLPAYEA-KDHQTLNN 1217 (1345)
Q Consensus 1147 ~eI~~lsN~lfY~g~L~~~~~~va~~~l--------~~~~~~~~~~wl~~~l~p~~~v~Fidtd~~~~~e~-~~~~s~~N 1217 (1345)
.+||.++|.+||+|+|+||+.+++.+.. ...+......|+++++.|.++++|+++|.+...++ .+.+...|
T Consensus 873 ~~I~~LSN~L~Yg~~L~Cgs~eVs~~~~~~~~~~~~~~~~~s~s~~wl~~v~~p~~~v~f~~~D~~~~ie~~~e~~~i~N 952 (1100)
T KOG1805|consen 873 REIMRLSNKLIYGNRLKCGSKEVSRASELDRKGALSVYMDDSSSDHWLQAVLEPTRDVCFVNTDTCSTIESQGEKGGITN 952 (1100)
T ss_pred chHHhhhhhheECCeeeecChhhhhhhccccchhhhhhcccccchHHHHHhhcCCccceEEecCcccchhhhccccCcCc
Confidence 9999999999999999999999986422 11223346789999999999999999999876654 34567889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCcEEEEecChHHHHHHHHHcCCCCcEEEeccCccccccCEEEEEccCCCCCCCCccccc
Q 000698 1218 PVEACLIAKITQELVKNEIEGKDIGIITPYNSQANLIRHSLSVSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTSSL 1297 (1345)
Q Consensus 1218 ~~EA~lV~~lv~~Ll~~gv~~~dIGVITPYraQv~lIr~~L~~~~VeV~TVD~fQGrEkdvVIIS~vrsn~~~~~~~~~f 1297 (1345)
..||.+|.+++..+++.|++++|||||+|||+|+.+|++.+....+||.|||+|||||+|+||+||||+|.. ...+++
T Consensus 953 ~~EA~li~~~~~~fv~sGv~~~dIGIis~YraQv~Li~~~l~~~~lEinTVD~yQGRDKd~IivSfvrsn~~--~~~~eL 1030 (1100)
T KOG1805|consen 953 HGEAKLISELVEDFVKSGVKPSDIGIISPYRAQVELIRKILSSAVLEINTVDRYQGRDKDCIIVSFVRSNKK--SKVGEL 1030 (1100)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHeeeeehHHHHHHHHHhhccccceeeeehhhhcCCCCCEEEEEEEecCCc--ccHHHH
Confidence 999999999999999999999999999999999999999999888999999999999999999999999976 346799
Q ss_pred ccccchhhHhhhhcccceEEEeecchhccChhHHHHHHHHHhcCCcC
Q 000698 1298 LGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGIL 1344 (1345)
Q Consensus 1298 L~d~rRLNVAlTRAK~kLIIVGs~~tL~~~~~~~~li~~~~~~g~i~ 1344 (1345)
|+||||+|||+||||+|||+||+.++|..+|.++.|++++.++.|++
T Consensus 1031 LkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~~l~~~l~~~~~l~ 1077 (1100)
T KOG1805|consen 1031 LKDWRRLNVALTRAKKKLILVGSKSTLESYPPFRQLLKLLENRIELL 1077 (1100)
T ss_pred HHhhHHHHHHHHhhhceEEEEecccccccCchHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999998887764
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities | Back alignment and domain information |
|---|
| >COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1804 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A | Back alignment and domain information |
|---|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
| >KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
| >KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00609 recB exodeoxyribonuclease V, beta subunit | Back alignment and domain information |
|---|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
| >PRK13909 putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >PRK10876 recB exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >TIGR00372 cas4 CRISPR-associated protein Cas4 | Back alignment and domain information |
|---|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
| >PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A | Back alignment and domain information |
|---|
| >TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >PHA00619 CRISPR-associated Cas4-like protein | Back alignment and domain information |
|---|
| >PF12705 PDDEXK_1: PD-(D/E)XK nuclease superfamily; PDB: 1W36_B 3K70_B 3U4Q_A 3U44_A | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PHA01622 CRISPR-associated Cas4-like protein | Back alignment and domain information |
|---|
| >PF06023 DUF911: Archaeal protein of unknown function (DUF911); InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats) | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >TIGR02773 addB_Gpos ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
| >PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR03623 probable DNA repair protein | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1804 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02786 addB_alphas double-strand break repair protein AddB, alphaproteobacterial type | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR02774 rexB_recomb ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02773 addB_Gpos ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
| >PRK13909 putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK10876 recB exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51 | Back alignment and domain information |
|---|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PF12684 DUF3799: PDDEXK-like domain of unknown function (DUF3799); InterPro: IPR024432 This entry represents a PDDEXK-like domain of unknown function found in proteins from bacteria and viruses | Back alignment and domain information |
|---|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02774 rexB_recomb ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B | Back alignment and domain information |
|---|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
| >COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG2887 RecB family exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
| >PRK06851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
| >PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 | Back alignment and domain information |
|---|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
| >TIGR00041 DTMP_kinase thymidylate kinase | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
| >cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) | Back alignment and domain information |
|---|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK13973 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
| >cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor | Back alignment and domain information |
|---|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA03311 helicase-primase subunit BBLF4; Provisional | Back alignment and domain information |
|---|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1345 | ||||
| 4b3g_A | 646 | Crystal Structure Of Ighmbp2 Helicase In Complex Wi | 6e-46 | ||
| 4b3f_X | 646 | Crystal Structure Of 1ghmbp2 Helicase Length = 646 | 9e-46 | ||
| 2gjk_A | 624 | Structural And Functional Insights Into The Human U | 1e-37 | ||
| 2xzo_A | 623 | Upf1 Helicase - Rna Complex Length = 623 | 1e-37 | ||
| 2wjv_A | 800 | Crystal Structure Of The Complex Between Human Nons | 2e-37 | ||
| 2xzl_A | 802 | Upf1-Rna Complex Length = 802 | 2e-31 |
| >pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna Length = 646 | Back alignment and structure |
|
| >pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase Length = 646 | Back alignment and structure |
| >pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1 Helicase Core Length = 624 | Back alignment and structure |
| >pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex Length = 623 | Back alignment and structure |
| >pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense Mediated Decay Factors Upf1 And Upf2 Length = 800 | Back alignment and structure |
| >pdb|2XZL|A Chain A, Upf1-Rna Complex Length = 802 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Length = 624 | Back alignment and structure |
|---|
Score = 384 bits (987), Expect = e-119
Identities = 154/592 (26%), Positives = 248/592 (41%), Gaps = 81/592 (13%)
Query: 806 DGDSLIGAAIPTKDMDCTLRSGDYVILSTESDRLAVASGL-----ITEISRFHVSVSFSK 860
+ + +P D D L GD + L + D + G+ + + +++
Sbjct: 48 NKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIEL-- 105
Query: 861 PLRLPGRNSSSDADSLLHEVWRIDKDEIMTSFSVMRYNLVQLF-LQSAQSSQLRRMIVDL 919
SS A + +++D TSF M+ L +++ S + ++
Sbjct: 106 -------RSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 158
Query: 920 EAPRFDSGSVFSQDPALSYIWSEKSLNDDQRRAIIKVLTAKDYALILGMPGTGKTSTMVH 979
E + Q P LN Q A+ VL + +LI G PGTGKT T
Sbjct: 159 EVEDV---IIKCQLPKRFTAQGLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT 214
Query: 980 AVKALLMRGAS-ILLTSYTNSAVDNLLIKLKSQSIDFVRIG--RHEVVHKEIQKHCLSAM 1036
V L +G +L+ + +N AVD L K+ + VR+ E + + L
Sbjct: 215 IVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQ 274
Query: 1037 --NINSVEEIKKR-----------------------------LDQVKVVAVTCLGITNPL 1065
N++S+ E++K L V+ TC+G +P
Sbjct: 275 IRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR 334
Query: 1066 LTDKKFDVCIMDEAGQTTLPVSLGPLMF-ASKFVLVGDHYQLPPLVQSTEARENGMEISL 1124
L +F ++DE+ Q T P + P++ A + +LVGDH QL P+V +A + G+ SL
Sbjct: 335 LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSL 394
Query: 1125 FRRLSEEHPQAISALQSQYRMCQGIMELSNALIYGDRLSCGSDEIANAKIKVSDLSSCSP 1184
F RL + I LQ QYRM + + + Y L G K
Sbjct: 395 FERLVVLGIRPIR-LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVK---------KG 444
Query: 1185 WLKEALNPCRPVIFVNTDMLPAYEAKDHQTLNNPVEACLIAKITQELVKNEIEGKDIGII 1244
+ + P +P+ F T + + N EA + KIT +L+K + IGII
Sbjct: 445 FDFQWPQPDKPMFFYVTQGQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGII 503
Query: 1245 TPYNSQANLIRHSLS---------VSSVEIHTIDKYQGRDKDCILVSFVRSSENPRNCTS 1295
TPY Q + + + VEI ++D +QGR+KD I++S VR++E+
Sbjct: 504 TPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH-----Q 558
Query: 1296 SL--LGDWHRINVALTRAKKKLIMVGSCRTLSKVPLLKLLINKVGEQSGILN 1345
+ L D R+NVALTRA+ +I+VG+ + LSK PL L+N EQ ++
Sbjct: 559 GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE 610
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Length = 802 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Length = 446 | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Length = 574 | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Length = 608 | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Length = 459 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1345 | ||||
| d1w36d1 | 359 | c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha c | 5e-19 | |
| g1qhh.1 | 623 | c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bac | 7e-11 | |
| d1pjra1 | 318 | c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillu | 6e-10 | |
| d1uaaa1 | 306 | c.37.1.19 (A:2-307) DEXX box DNA helicase {Escheri | 8e-09 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 |
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (217), Expect = 5e-19
Identities = 49/282 (17%), Positives = 86/282 (30%), Gaps = 53/282 (18%)
Query: 894 VMRYNLVQLFLQSAQSSQLRRMIVDL-EAPRFDSGSVFSQDPALSYIWSEKSLNDDQRRA 952
++ + + L + R ++ A D + L ++ + Q+ A
Sbjct: 100 ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALL---AQTLDKLFPVSDEINWQKVA 156
Query: 953 IIKVLTAKDYALILGMPGTGKTSTMVHAVKALLM----RGASILLTSYTNSAVDNL--LI 1006
LT + ++I G PGTGKT+T+ + AL+ I L + T A L +
Sbjct: 157 AAVALTRR-ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 215
Query: 1007 KLKSQSIDFVRIGRHEVVHKEIQKHCLSAMNINSVEEIKKRLDQVKVVAVTCLGITNPLL 1066
+ + + + H L S +
Sbjct: 216 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGN----------------- 258
Query: 1067 TDKKFDVCIMDEAGQTTLPVS---LGPLMFASKFVLVGDHYQLPP---------LVQSTE 1114
DV ++DEA LP+ + L ++ + +GD QL +
Sbjct: 259 -PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 317
Query: 1115 ARENGMEISLFRRLSEEHPQAISA------------LQSQYR 1144
A RL+ H A + LQ YR
Sbjct: 318 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 359
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 318 | Back information, alignment and structure |
|---|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 306 | Back information, alignment and structure |
|---|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1345 | |||
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 100.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 99.94 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 99.92 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 99.92 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 99.84 | |
| d1pjra2 | 333 | DEXX box DNA helicase {Bacillus stearothermophilus | 99.24 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 99.24 | |
| d1uaaa2 | 333 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 99.15 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.98 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.77 | |
| d1w36d2 | 246 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.76 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.53 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.49 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.45 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.44 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.43 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.42 | |
| d1w36c2 | 470 | Exodeoxyribonuclease V gamma chain (RecC), N-termi | 98.39 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.18 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.15 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.14 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.04 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.02 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.02 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.99 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.97 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.97 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 97.96 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.94 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.87 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.85 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.81 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.62 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.38 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.14 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.1 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 97.03 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.01 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.93 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.79 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.74 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.73 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.72 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.71 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.67 | |
| d1w36b3 | 276 | Exodeoxyribonuclease V beta chain (RecB), C-termin | 96.62 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.6 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.45 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.32 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.27 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 96.24 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.21 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.09 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.04 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.95 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.94 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.94 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.92 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.89 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.77 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 95.66 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.52 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 95.47 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.46 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.44 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 95.39 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.25 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.16 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.06 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.05 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 95.04 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.97 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 94.84 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.72 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.69 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.65 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.61 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.57 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 94.54 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.44 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.38 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.36 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.26 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.16 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.11 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.08 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.02 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.96 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.94 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.93 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.87 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.81 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.7 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.66 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.49 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 93.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.4 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.4 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.26 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.16 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.16 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.13 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.12 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.08 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.08 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.05 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.77 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.73 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.43 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.41 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.19 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.16 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.97 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.94 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.9 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.89 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.77 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 91.51 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.5 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.39 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.1 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.07 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.9 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.69 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.6 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 90.32 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.8 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.6 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.93 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.77 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.29 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.26 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 86.89 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 86.02 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.0 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.68 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.65 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 83.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 81.5 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 80.64 |
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
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| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
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| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
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| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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