Citrus Sinensis ID: 000699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340-----
MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKTLRRQKSAKENAPPSDLNSLQPSPSPAKMKSPLPPRPPNPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHNPTDPNGVHTAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVLADVEYTPNLSANSAVNCASPSSVSIIQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTKSSLADAPSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESADKSKLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEEEPHSAGDQQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEccccccEEccccEEEcEEccccccHHHHHHHHcHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHcccccccccccEEEEEEEEEEEcccccccccEEEEccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccHHHHHEEccccccccccHHHHHHHHHHHHccccccEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHcccccccccccccc
cccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHccccEEEEEEcccEEEEcccEEEccEEEcccccHHHHHHHHcHHHHHHHcccccEEEEEEccccccHHHHHcEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccEEEEccccccccccEEEEcccEEEEcccccEEcccHHHHHHHHHHHHHHHHHHHHHccccHHHcEEEEEEEEEEEEccccccccEEEEEEEEEEEcccccccccccccccccccccEccHHHHHHHHHHHHHHHcccccccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHcccccEEEEccEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcccccHHHHccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccEEEccccHccccccEEccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHcHccEcccHHHcccccccccccEEEEEccccccccccccEEcHHHHHHHHHcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcHEEEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHccccccccccccccc
mkhfmlpkstvlrethtndspsssstspnpnssksktlrrqksakenappsdlnslqpspspakmksplpprppnplkrklamesfpenlvpgvsdsgVKVIVRmrplnkeenegEMIVQKvaddslsinghtftfdsvaDMEATQLDVFQLVgvplvenclsgfnssvfaygqtgsgktytmwgpanalleenlssdqqgltPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEqitdlldpsqrnlqiredvksgvyvENLTEEYVCTMKDVTQLLMKGLsnrrtgatsinaessrshSVFTCVVESrckskadgisrfkssrinlvdlaGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSqtgkqrhipyrdsrLTFLLQESLGGNAKLAMICAispaqscksetfSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMkanghnptdpngvhtagWARRSLNLLKsfhhpmtlphidddgdeemEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIkeqcaedtdvnmeEVTSEQVEDLESeiitvepvtkssdysddivlnhnikdqngeentNQLIVSTVKRDSSRQLLEEKETFGSSVSELLDEEsqrkavghessgpvsdplfgvladveytpnlsansavncaspssvsiiqsnvspvlksptpsisprisnsrkslrtsSMLTASQKdlkvgskldpEAIHLSLAKstkssladapsiqmgknvmTTTEHLAASLHRGLEiidshrqssafrrsafrlsfrpadlKQVLLVEKVNVGVQtslddgiseEDLVSFLCNKCKNRAQLDIKEanensrlqlvpvdgsesadksklVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESlmdgvlpteefMDEEFASLMHEHKLLKEKYenhpevlgTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYidsssssarkqksfpqltyscepslvpslstvpeptkeTAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIiaesrlpketirpafddssmakydveeephsagdQQWREEFQQFytddseisklaepswfsgydrcni
mkhfmlpkstvlrethtndspsssstspnpnssksktLRRQKSakenappsdlnslqpspspakmksplppRPPNPLKRKLAMESFPenlvpgvsdsgvkVIVRMrplnkeenegEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGatsinaessrshsvFTCVVESRckskadgisrfkssrinlvdlagserQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAiknkavvnevmqddvNYLREVIRQLRDELHRMKAnghnptdpngvhtAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGrvktvksesqfavsgetqlntlaGSIKEQCAEDTDVNMEEVTSeqvedleseiitvepvtkssdysdDIVLNHnikdqngeentnqLIVStvkrdssrqLLEEketfgssvselLDEESQRKavghessgpvsdpLFGVLADVEYTPNLSANSAVNCASPSSVSIIQSnvspvlksptpsisprisnsrkslrtssMLTAsqkdlkvgskldPEAIHLSLAkstkssladapsiQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLdikeanensrlqlvpvdgsesadksklvpkAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIdsssssarkqKSFPQLTyscepslvpslstvpeptketaeekfeqertrwteVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLneiiaesrlpketirpafDDSSMAKYDVEEephsagdqqWREEFQQFYTDdseisklaepswfsgydrcni
MKHFMLPKSTVLRETHTNDspsssstspnpnssksktLRRQKSAKENAPPSDLNSLQPSPSPAKMKSplpprppnplkrklAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHNPTDPNGVHTAGWARRSLNLLKSFHHPMTLPHIdddgdeemeidedAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVLADVEYTPNLSANSAVNCASPSSVSIIQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHlslakstksslaDAPSIQMGKNVMTTTEHLAASLHRGLEIIDshrqssafrrsafrlsfrpaDLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESADKSKLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDsssssARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSlaekqkqeleaekkCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVkkaaakaGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGellvrlkeaeeavaaarkrameaeqeTVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEEEPHSAGDQQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI
**************************************************************************************************VKVIVR*************IVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEE********LTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGL*******************VFTCVVESRCK*************INLV***************************LSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDE****************VHTAGWARRSLNLLKSFHHPMT*******************EKLCNHVDKQLAGI*****************************************************************************IVL****************************************************************LFGVLADVEYTPNL*************************************************************************************************LAASLHRGLEIID******AFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLD*****************************AVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYI****************************************************VESGWIS**************************************************YADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVA******************************ELLVR******************************************************************************************************************
****************************************************************************************************VIVRMRPLNKEENEGE***********SINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANA**********QGLTPRVFERLFSRINE**********NYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVES**************SRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDE***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FSGYDRCNI
MKHFMLPKSTVLR**********************************************************RPPNPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHNPTDPNGVHTAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEG************VSGETQLNTLAGSIKEQCAED**************DLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLE*****************************VSDPLFGVLADVEYTPNLSANSAVNCASPSSVSIIQSNVSP***********************SMLTASQKDLKVGSKLDPEAIHLSLA*********APSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPV*********KLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYI**************QLTYSCEPSLVPSLS**********************EVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIED***********GAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEE****************VTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKY***********QQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI
************************************************************************************************SGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAG*************LKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGH************************************GDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIV***K*DSSR*****KETF****************************LFG****************************************************************************************************NVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESADKSKLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDS**********F*Q************************EEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYD*****HSAGDQQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKTLRRQKSAKENAPPSDLNSLQPSPSPAKMKSPLPPRPPNPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxGHNPTDPNGVHTAGWARRSLNLLKSFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVLADVEYTPNLSANSAVNCASPSSVSIIQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTKSSLADAPSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESADKSKLVPKAVEKVLAGAIRREMALEEFxxxxxxxxxxxxxxxxxxxxxRECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHRKIQEGIEDVKKAAAKAGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEEEPHSAGDQQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1345 2.2.26 [Sep-21-2011]
Q8L7Y81313 Kinesin-like protein KIN1 yes no 0.962 0.985 0.616 0.0
Q9LDN01292 Kinesin-like protein KIN1 no no 0.949 0.988 0.615 0.0
Q9GYZ0 1463 Kinesin-like protein KIF1 yes no 0.275 0.252 0.494 1e-100
Q9NS87 1388 Kinesin-like protein KIF1 yes no 0.293 0.284 0.469 4e-98
Q7TSP2 1385 Kinesin-like protein KIF1 yes no 0.278 0.270 0.480 2e-97
Q498L9 1387 Kinesin-like protein KIF1 N/A no 0.346 0.335 0.419 3e-96
Q6P9L6 1387 Kinesin-like protein KIF1 yes no 0.278 0.269 0.475 1e-95
Q91785 1388 Kinesin-like protein KIF1 N/A no 0.321 0.311 0.42 3e-94
O15066747 Kinesin-like protein KIF3 no no 0.257 0.463 0.421 6e-76
Q61771747 Kinesin-like protein KIF3 no no 0.257 0.463 0.421 8e-76
>sp|Q8L7Y8|KN12B_ARATH Kinesin-like protein KIN12B OS=Arabidopsis thaliana GN=KIN12B PE=1 SV=1 Back     alignment and function desciption
 Score = 1604 bits (4154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/1364 (61%), Positives = 1032/1364 (75%), Gaps = 70/1364 (5%)

Query: 1    MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKTLRRQKSAKENAPPSDLNSLQP-- 58
            MKHFM+P++ +LR+          S SPNP+ +KSK+ R+ KS+KENAPP DLNSL P  
Sbjct: 1    MKHFMMPRNAILRDI-------GESQSPNPSLTKSKSQRKIKSSKENAPPPDLNSLIPDH 53

Query: 59   --SPSPAKMKSPLPPRPPNPLKRKLAMESFPENLVP-GVSDSGVKVIVRMRPLNKEENEG 115
              SP+  K   P  P   NPLKRKL  E+  +N V  GVSDSGVKVIVRM+P +K E E 
Sbjct: 54   RSSPAKLKSPLPPRPPSSNPLKRKLIAEATADNGVAIGVSDSGVKVIVRMKPPSKGEEE- 112

Query: 116  EMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQT 175
            EMIV+K+++D+L+IN  TFTFDS+AD E+TQ ++FQLVG PLVENCL+GFNSSVFAYGQT
Sbjct: 113  EMIVKKISNDALTINEQTFTFDSIADPESTQDEIFQLVGAPLVENCLAGFNSSVFAYGQT 172

Query: 176  GSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFL 235
            GSGKTYTMWGPAN LLEE+LS DQ+GLTPRVFE LF+R++EEQ KHA++QL YQCRCSFL
Sbjct: 173  GSGKTYTMWGPANGLLEEHLSGDQRGLTPRVFELLFARLSEEQAKHAERQLKYQCRCSFL 232

Query: 236  EIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGAT 295
            EIYNEQITDLLDPS +NL IREDVKSGVYVENLTEEYV  +KD+++LL+KGL+NRRTGAT
Sbjct: 233  EIYNEQITDLLDPSLKNLMIREDVKSGVYVENLTEEYVKNLKDLSKLLVKGLANRRTGAT 292

Query: 296  SINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEA 355
            S+NAESSRSH VFTCVVES CKS ADG+S FK+SRINLVDLAGSERQKLTGAAG+RLKEA
Sbjct: 293  SVNAESSRSHCVFTCVVESHCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEA 352

Query: 356  GNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQ 415
            GNIN+SLSQLGNLINILAE+SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM+CA+SP+Q
Sbjct: 353  GNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAVSPSQ 412

Query: 416  SCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKAN-GHNPTD 474
            SC+SETFSTLRFAQRAKAI+NKA+VNEVMQDDVN+LREVIRQLRDEL R+K + G+NPT+
Sbjct: 413  SCRSETFSTLRFAQRAKAIQNKAIVNEVMQDDVNFLREVIRQLRDELQRVKDDKGNNPTN 472

Query: 475  PNGVHTAGW-ARRSLNLLKSF--HHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAG 531
            PN  +T  W ARRSL+LL+SF   HP +LP+ DDDGD EMEIDE+AVE+LC  +      
Sbjct: 473  PNAAYTTSWNARRSLSLLRSFGLGHPKSLPNGDDDGDTEMEIDEEAVERLCAQMGLSPPA 532

Query: 532  IEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLE 591
             +++ E+   RV+ + S  Q  V  +   N     +K   +E TDVNME+   +      
Sbjct: 533  EDNNQEM--SRVEKINSSLQTVVLKDESYNN--SHLKS--SEATDVNMEDACCQ------ 580

Query: 592  SEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLEEKETFGSS 651
                                      + NG E  N L V+    D S     + ++  +S
Sbjct: 581  -------------------------TENNGSETDNALTVAETMDDGSSV---QPDSITNS 612

Query: 652  VSELLDEESQRKAVGHESSGPVSDPL-----FGVLADVEYTPNLSANSAVNCASPSSVSI 706
            +   + + +Q  +     + P    L        +  V  T N +   +VN  SP  +S+
Sbjct: 613  LHSCISDTNQGNSPSKAENIPSCQDLVIEADVSAIVSVADTSNNTEQVSVNPVSP-CLSV 671

Query: 707  IQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTK 766
               +VSPVL  PT S SP+I NSRKSLRT+SM TASQKD++  ++L PE +  S A ST+
Sbjct: 672  APVSVSPVLIPPTESASPKIRNSRKSLRTTSMSTASQKDIERANQLTPEVVEPSPAMSTE 731

Query: 767  S-SLADAPSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQV 825
              +L  A S +  +     T  LAASLHRG++++DS+RQS+A RRS FRLS++  + K  
Sbjct: 732  VLNLYSALSTKKSEAFPVPTRQLAASLHRGMKLLDSYRQSTALRRSTFRLSYKALECKPS 791

Query: 826  LLVEKVNVGVQTSLD-DGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESA 884
             ++ K +VGVQT    D I+E++    LC++CK RA+ D +E ++ S LQLVP+D SE +
Sbjct: 792  TVLSKADVGVQTYPQADEIAEDNSKEVLCSRCKCRAECDAQEISDTSNLQLVPIDNSEGS 851

Query: 885  DKSKL-VPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTR 943
            +KS   VPKAVEKVLAG+IRREMA+EEFC KQASEI  LNRLVQQYKHERECN+II QTR
Sbjct: 852  EKSNFQVPKAVEKVLAGSIRREMAMEEFCTKQASEISQLNRLVQQYKHERECNAIIGQTR 911

Query: 944  EDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELE 1003
            EDKI+RLESLMDGVL  ++F+DEEFASLMHEHKLLK+ YENHPEVL T+IELKRVQ+ELE
Sbjct: 912  EDKIVRLESLMDGVLSKDDFLDEEFASLMHEHKLLKDMYENHPEVLQTRIELKRVQEELE 971

Query: 1004 HYRNFY-DLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLST 1062
             ++NFY D+GE+EVLLEE+ DL++QLQ Y DSS +SAR++ S  +LTY+C+P+  P L+T
Sbjct: 972  SFKNFYGDMGEREVLLEEIHDLKAQLQCYTDSSLTSARRRGSLLKLTYACDPNQAPQLNT 1031

Query: 1063 VPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVE 1122
            +PE   E  E+  EQER RWTE ES WISLAEELR EL+ +R L EKQK+EL+ EK+C E
Sbjct: 1032 IPESVDEGPEKTLEQERLRWTEAESNWISLAEELRTELDTNRLLMEKQKRELDTEKRCAE 1091

Query: 1123 ELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKF 1182
            EL EAMQMAM+G+ARM+EQYADLEEKHIQLLARHR+I+EGI+DVKKAAA+AGV+GAES+F
Sbjct: 1092 ELTEAMQMAMQGHARMIEQYADLEEKHIQLLARHRRIREGIDDVKKAAARAGVKGAESRF 1151

Query: 1183 INVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAA 1242
            IN LAAEISALKV REKE +Y RDENK LQ+QLRDTAEAVQAAGELLVR KEAEE +  A
Sbjct: 1152 INALAAEISALKVQREKEVRYFRDENKSLQSQLRDTAEAVQAAGELLVRFKEAEEGLTFA 1211

Query: 1243 RKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEI-IAESRLPKETIRPAFDDSSMAKYD 1301
            +KRAM+AE E   AYK++D+LK+K+E E+ST+N+   AE + P E+++ + +D +MAKYD
Sbjct: 1212 QKRAMDAEYEASEAYKKVDKLKRKYETEISTVNQQHNAEPQNPIESLQASCNDDAMAKYD 1271

Query: 1302 VEEEPHSAGDQQWREEFQQFYTDDSEISKLAEPSWFSGYDRCNI 1345
              E   S GD QWREEFQ FY  D E+SKLAEPSWFSGYDRCNI
Sbjct: 1272 --EPSASDGDNQWREEFQPFYKKDEELSKLAEPSWFSGYDRCNI 1313
Plus-end directed kinesin-like motor enzyme that plays a critical role in the organization of phragmoplast microtubules during cytokinesis. Constitutes a signaling module in association with serine/threonine-protein kinase TIO that is required to support phragmoplast expansion and cell-plate growth in plant cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDN0|KN12A_ARATH Kinesin-like protein KIN12A OS=Arabidopsis thaliana GN=KIN12A PE=1 SV=1 Back     alignment and function description
>sp|Q9GYZ0|KIF15_STRPU Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1 Back     alignment and function description
>sp|Q9NS87|KIF15_HUMAN Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1 Back     alignment and function description
>sp|Q7TSP2|KIF15_RAT Kinesin-like protein KIF15 OS=Rattus norvegicus GN=Kif15 PE=2 SV=1 Back     alignment and function description
>sp|Q498L9|KI15B_XENLA Kinesin-like protein KIF15-B OS=Xenopus laevis GN=kif15-b PE=1 SV=1 Back     alignment and function description
>sp|Q6P9L6|KIF15_MOUSE Kinesin-like protein KIF15 OS=Mus musculus GN=Kif15 PE=1 SV=1 Back     alignment and function description
>sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus laevis GN=kif15-a PE=1 SV=1 Back     alignment and function description
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 Back     alignment and function description
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1345
2254334941354 PREDICTED: uncharacterized protein LOC10 0.984 0.977 0.703 0.0
2241315261289 predicted protein [Populus trichocarpa] 0.942 0.983 0.687 0.0
2240695971294 predicted protein [Populus trichocarpa] 0.944 0.982 0.673 0.0
2555506641282 Carboxy-terminal kinesin, putative [Rici 0.930 0.975 0.679 0.0
223312911313 putative phragmoplast-associated kinesin 0.962 0.985 0.616 0.0
2978311361310 PAKRP1L [Arabidopsis lyrata subsp. lyrat 0.957 0.983 0.615 0.0
92945241268 kinesin-like protein [Arabidopsis thalia 0.928 0.985 0.595 0.0
184141531292 phragmoplast-associated kinesin-related 0.949 0.988 0.615 0.0
2978008461287 hypothetical protein ARALYDRAFT_915478 [ 0.946 0.989 0.615 0.0
2244771 1662 kinesin like protein [Arabidopsis thalia 0.910 0.737 0.556 0.0
>gi|225433494|ref|XP_002265361.1| PREDICTED: uncharacterized protein LOC100264192 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1801 bits (4666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 967/1375 (70%), Positives = 1106/1375 (80%), Gaps = 51/1375 (3%)

Query: 1    MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKTLRRQKSAKENAPPSDLNSLQPSP 60
            MKHFM P++T+LRET +  S SS+S+    +  +    R+QK +KENAPPSDLN++    
Sbjct: 1    MKHFMQPRNTILRETDSQSSSSSASSPNPNSVKQRSASRKQKWSKENAPPSDLNTMADHS 60

Query: 61   SPAKMKSPLPP--------------RPPNPLKRKLAMESFPENLVPGVSDSGVKVIVRMR 106
            SP+     LPP                 NPLKRKL+M++ PEN VPG SDSGV+VIVRMR
Sbjct: 61   SPSLAAKSLPPSGKIRSPLPPRPPSSNSNPLKRKLSMDTVPENAVPGASDSGVRVIVRMR 120

Query: 107  PLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFN 166
            P NK+E EGE+I QK++ DSLSI G TFTFDSVAD E+TQ ++FQLVG PLVENCLSGFN
Sbjct: 121  PPNKDEEEGEVIAQKMSGDSLSILGQTFTFDSVADAESTQANIFQLVGSPLVENCLSGFN 180

Query: 167  SSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQL 226
            SSVFAYGQTGSGKTYTMWGPANALL+ENLS+++QGLTPRVFERLF+RINEEQIKHADKQL
Sbjct: 181  SSVFAYGQTGSGKTYTMWGPANALLDENLSNNKQGLTPRVFERLFARINEEQIKHADKQL 240

Query: 227  NYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKG 286
             YQCRCSFLEIYNEQITDLLDPSQ+NLQIREDVKSGVYVENLTEE VCTMKDVTQLL+KG
Sbjct: 241  KYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEECVCTMKDVTQLLIKG 300

Query: 287  LSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTG 346
            LSNRRTGATSINAESSRSHSVFTCVVESRCKS +DGIS FK+SRINLVDLAGSERQKLTG
Sbjct: 301  LSNRRTGATSINAESSRSHSVFTCVVESRCKSTSDGISSFKTSRINLVDLAGSERQKLTG 360

Query: 347  AAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406
            AAG+RLKEAGNIN+SLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLA
Sbjct: 361  AAGDRLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 420

Query: 407  MICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMK 466
            M+CAISP QSCKSET STLRFAQRAKAIKNKAVVNEVMQDDVN+LR VIRQL+DEL RMK
Sbjct: 421  MVCAISPVQSCKSETLSTLRFAQRAKAIKNKAVVNEVMQDDVNFLRGVIRQLKDELLRMK 480

Query: 467  ANGHNPTDPNGVHTAGW-ARRSLNLLK-SFHHPMTLPHIDDDGDEEMEIDEDAVEKLCNH 524
            ANG+ PTD NG ++ GW ARRSLNLLK S + P TLPH+DDDGDEEMEIDE+AVEKL   
Sbjct: 481  ANGNQPTDSNGSYSTGWNARRSLNLLKFSLNRPTTLPHVDDDGDEEMEIDEEAVEKLWVQ 540

Query: 525  VDKQLAGIEDHHEIKEGRVKTVKSESQFAVS-----GETQLNTLAG-SIKEQCAEDTDVN 578
            V  Q    E++ +I  G+++ V+S+SQF  S     GE Q N      IKE+ +EDTDVN
Sbjct: 541  VGLQSVNGEENSKIDAGKIENVQSDSQFMASEEGIIGEPQSNMSQNECIKEEASEDTDVN 600

Query: 579  MEEVTSEQVEDLESEIITVEPVTKSSDYSD--DIVLNHNIKDQNGEENTNQLIVSTVKRD 636
            MEE  SEQVE  E+ I+      K++  S   D++  HN  + N +E+   LIVS    +
Sbjct: 601  MEEEISEQVEKHETMIVDCGEQVKNTQNSSQTDLLSPHNQSEINEDESQIHLIVSMPNEN 660

Query: 637  SSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVLADVEYTPNLSANSAV 696
             S    E K    S   +             ES G VS    G+ ++ E + N S N  +
Sbjct: 661  PS----EHKVVENSPTCQF-----------SESVGAVS---LGI-SEAEAS-NDSPNGLM 700

Query: 697  NCASPSSVSIIQSNVSPVLKSPTPSISPRIS-NSRKSLRTSSMLTASQKDLKVGSKLDPE 755
            +   PS++SI+  N+SPVLKSPT S+SPR+S NSRKSLRTSSMLTASQKDL+  SKLDPE
Sbjct: 701  DGIPPSNLSIVPCNISPVLKSPTLSVSPRVSNNSRKSLRTSSMLTASQKDLRDESKLDPE 760

Query: 756  AIHLSLAKSTKSSLADAPSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRL 815
              H S AKS K+S  +  S Q  K  + +TEHLAASLHRGLEIID HRQSSA RRS+FR 
Sbjct: 761  PSHTSFAKSMKNSSVNPLSSQSNKKFLASTEHLAASLHRGLEIIDVHRQSSALRRSSFRF 820

Query: 816  SFRPADLKQVLLVEKVNVGVQT-SLDDGISEEDLVSFLCNKCKNR-AQLDIKEANENSRL 873
            SF+PAD K +L V+KV+VGVQT   ++   EE+  + LC+ CK+   Q+++KEA E+S L
Sbjct: 821  SFKPADTKPILPVDKVDVGVQTLPQENEAPEEESEAVLCSNCKSTIPQVELKEAFESSNL 880

Query: 874  QLVPVDGSESADKS-KLVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHE 932
            QLVPVDGS+SADKS K VPKAVEKVLAGAIRREMALEEFC KQ SEI  LNRL+QQYKHE
Sbjct: 881  QLVPVDGSQSADKSKKQVPKAVEKVLAGAIRREMALEEFCTKQTSEIMQLNRLIQQYKHE 940

Query: 933  RECNSIISQTREDKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTK 992
            RECNSII QTREDKI+RLESLMDGVLPTEEF++EE  SL HEHKLLKEKYENHPEVL TK
Sbjct: 941  RECNSIIGQTREDKIIRLESLMDGVLPTEEFIEEELVSLTHEHKLLKEKYENHPEVLRTK 1000

Query: 993  IELKRVQDELEHYRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSC 1052
            +ELKRVQDELE YRNF+D+GE++VLLEE+QDLRS LQYYIDSS    RK+    QLTYSC
Sbjct: 1001 LELKRVQDELERYRNFFDMGERDVLLEEIQDLRSHLQYYIDSSPMPPRKRSPLLQLTYSC 1060

Query: 1053 EPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQ 1112
            +PSL P L T+ E T E+AEEK EQER RWTE ES WISL+EELR+ELEASRSLAEKQK 
Sbjct: 1061 QPSLTPPLFTISESTGESAEEKLEQERLRWTETESKWISLSEELRDELEASRSLAEKQKV 1120

Query: 1113 ELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAK 1172
            EL++EKKC EEL EAMQ+AMEG+ARMLEQYA+LEE+H+ LLARHRKIQEGI+DVKKAAAK
Sbjct: 1121 ELDSEKKCAEELKEAMQLAMEGHARMLEQYAELEERHMALLARHRKIQEGIDDVKKAAAK 1180

Query: 1173 AGVRGAESKFINVLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRL 1232
            AGV+GAESKFIN LAAEISALKV REKER+YLRDEN+GLQAQLRDTAEAVQAAGELLVRL
Sbjct: 1181 AGVKGAESKFINALAAEISALKVEREKERRYLRDENRGLQAQLRDTAEAVQAAGELLVRL 1240

Query: 1233 KEAEEAVAAARKRAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAF 1292
            KEAEEAVA A+K+AMEAEQET  AYKQI++LKKKHE E+STLN+ +AESRLPK+ + P +
Sbjct: 1241 KEAEEAVATAQKQAMEAEQETEKAYKQIEKLKKKHEKEISTLNQFLAESRLPKKALTPTY 1300

Query: 1293 DDSSMAKYDVEEEPHSAGDQQWREEFQQFYT-DDSEISKLAEP-SWFSGYDRCNI 1345
            DDS MAKYD  E  H+A DQQWREEF+ FY  +DSE+SKLAEP SWFSGYDRCNI
Sbjct: 1301 DDSEMAKYDAGES-HTACDQQWREEFEPFYNGEDSELSKLAEPSSWFSGYDRCNI 1354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131526|ref|XP_002321106.1| predicted protein [Populus trichocarpa] gi|222861879|gb|EEE99421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224069597|ref|XP_002303008.1| predicted protein [Populus trichocarpa] gi|222844734|gb|EEE82281.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550664|ref|XP_002516381.1| Carboxy-terminal kinesin, putative [Ricinus communis] gi|223544479|gb|EEF45998.1| Carboxy-terminal kinesin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|22331291|ref|NP_189009.2| putative phragmoplast-associated kinesin-related protein [Arabidopsis thaliana] gi|75154256|sp|Q8L7Y8.1|KN12B_ARATH RecName: Full=Kinesin-like protein KIN12B; AltName: Full=Phragmoplast-associated kinesin-related protein 1-like protein; Short=AtPAKRP1L gi|21703149|gb|AAM74514.1| AT3g23670/MDB19_16 [Arabidopsis thaliana] gi|23268687|gb|AAN16470.1| phragmoplast-associated kinesin-related protein 1-like protein [Arabidopsis thaliana] gi|23268689|gb|AAN16471.1| phragmoplast-associated kinesin-related protein 1-like protein [Arabidopsis thaliana] gi|332643277|gb|AEE76798.1| putative phragmoplast-associated kinesin-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831136|ref|XP_002883450.1| PAKRP1L [Arabidopsis lyrata subsp. lyrata] gi|297329290|gb|EFH59709.1| PAKRP1L [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9294524|dbj|BAB02786.1| kinesin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18414153|ref|NP_567423.1| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gi|75173840|sp|Q9LDN0.1|KN12A_ARATH RecName: Full=Kinesin-like protein KIN12A; AltName: Full=Phragmoplast-associated kinesin-related protein 1; Short=AtPAKRP1 gi|8745333|gb|AAF78893.1| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gi|8745335|gb|AAF78894.1| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] gi|332657984|gb|AEE83384.1| phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297800846|ref|XP_002868307.1| hypothetical protein ARALYDRAFT_915478 [Arabidopsis lyrata subsp. lyrata] gi|297314143|gb|EFH44566.1| hypothetical protein ARALYDRAFT_915478 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|2244771|emb|CAB10194.1| kinesin like protein [Arabidopsis thaliana] gi|7268120|emb|CAB78457.1| kinesin like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1345
TAIR|locus:21294551292 PAKRP1 "AT4G14150" [Arabidopsi 0.419 0.436 0.637 0.0
TAIR|locus:20880651313 KINESIN-12B "AT3G23670" [Arabi 0.527 0.540 0.553 1.7e-192
TAIR|locus:20876501114 AT3G20150 [Arabidopsis thalian 0.446 0.538 0.391 2.7e-145
TAIR|locus:2089000 2066 POK1 "phragmoplast orienting k 0.273 0.178 0.540 7.5e-120
TAIR|locus:2085844 2771 POK2 "phragmoplast orienting k 0.417 0.202 0.420 2.1e-105
UNIPROTKB|F1LTJ7 1384 Kif15 "Kinesin-like protein KI 0.278 0.270 0.483 5.3e-96
RGD|727790 1385 Kif15 "kinesin family member 1 0.278 0.270 0.483 5.4e-96
UNIPROTKB|Q7TSP2 1385 Kif15 "Kinesin-like protein KI 0.278 0.270 0.483 5.4e-96
UNIPROTKB|Q9NS87 1388 KIF15 "Kinesin-like protein KI 0.293 0.284 0.472 3.7e-94
UNIPROTKB|F1SRA8 1388 KIF15 "Uncharacterized protein 0.272 0.264 0.489 1.4e-92
TAIR|locus:2129455 PAKRP1 "AT4G14150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1803 (639.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 385/604 (63%), Positives = 453/604 (75%)

Query:     2 KHFMLPKSTVLR---ETHTNDXXXXXXXXXXXXXXXXXXLRRQKSAKENAPPSDLNSLQP 58
             KHF LP++ +LR   E H+ +                   R+ +SAKENAPP D N+  P
Sbjct:     3 KHFTLPRNAILRDGGEPHSPNPSISKSKPP----------RKLRSAKENAPPLDRNTSTP 52

Query:    59 SPSPAKMKSXXXXXX--XXXXXXXXAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGE 116
                  +MK+                + E+  E+   G SDSGVKVIVRM+PLNK E EG+
Sbjct:    53 DHRSMRMKNPLPPRPPPSNPLKRKLSAETATES---GFSDSGVKVIVRMKPLNKGE-EGD 108

Query:   117 MIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTG 176
             MIV+K++ DSL+++G TFTFDS+A+ E+TQ  +FQLVG PLVENCLSGFNSSVFAYGQTG
Sbjct:   109 MIVEKMSKDSLTVSGQTFTFDSIANPESTQEQMFQLVGAPLVENCLSGFNSSVFAYGQTG 168

Query:   177 SGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLE 236
             SGKTYTMWGPAN LLEE+L  DQ+GLTPRVFERLF+RI EEQ+KHA++QLNYQCRCS LE
Sbjct:   169 SGKTYTMWGPANGLLEEHLCGDQRGLTPRVFERLFARIKEEQVKHAERQLNYQCRCSLLE 228

Query:   237 IYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATS 296
             IYNEQITDLLDPSQ+NL IREDVKSGVYVENLTEEYV  + DV+QLL+KGL NRRTGATS
Sbjct:   229 IYNEQITDLLDPSQKNLMIREDVKSGVYVENLTEEYVKNLTDVSQLLIKGLGNRRTGATS 288

Query:   297 INAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAG 356
             +N ESSRSH VFTCVVESRCK+ ADG+S FK+SRINLVDLAGSERQK TGAAGERLKEAG
Sbjct:   289 VNTESSRSHCVFTCVVESRCKNVADGLSSFKTSRINLVDLAGSERQKSTGAAGERLKEAG 348

Query:   357 NINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQS 416
             NIN+SLSQLGNLINILAE+SQTGK RHIPYRDSRLTFLLQESLGGNAKLAM+CA+SP+QS
Sbjct:   349 NINRSLSQLGNLINILAEISQTGKPRHIPYRDSRLTFLLQESLGGNAKLAMVCAVSPSQS 408

Query:   417 CKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHNPTDPN 476
             C+SETFSTLRFAQRAKAI+NKAVVNEVMQDDVN+LR VI QLRDEL RMK +G+NPT+PN
Sbjct:   409 CRSETFSTLRFAQRAKAIQNKAVVNEVMQDDVNFLRGVIHQLRDELQRMKNDGNNPTNPN 468

Query:   477 GVHTAGW-ARRSLNLLKSFH--HPMTLPHIXXXXXXXXXXXXXAVEKLCNHVDKQ--LAG 531
               ++  W ARRSLNLL+SF   HP +LPH              AVE+LC  V  Q  LA 
Sbjct:   469 VAYSTAWNARRSLNLLRSFGLGHPRSLPHEDNDGDIEMEIDEAAVERLCVQVGLQSSLAS 528

Query:   532 IEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLE 591
                +H++   RVK++ S       G+        SI+++  ED+DV ME+      E+ E
Sbjct:   529 EGINHDMN--RVKSIHSSD-----GQ--------SIEKRLPEDSDVAMEDACCH-TENHE 572

Query:   592 SEII 595
              E +
Sbjct:   573 PETV 576
GO:0003777 "microtubule motor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0080175 "phragmoplast microtubule organization" evidence=IMP
GO:0000914 "phragmoplast assembly" evidence=IGI
GO:0008574 "plus-end-directed microtubule motor activity" evidence=IGI
GO:0055046 "microgametogenesis" evidence=IMP
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000280 "nuclear division" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2088065 KINESIN-12B "AT3G23670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087650 AT3G20150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089000 POK1 "phragmoplast orienting kinesin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085844 POK2 "phragmoplast orienting kinesin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LTJ7 Kif15 "Kinesin-like protein KIF15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|727790 Kif15 "kinesin family member 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7TSP2 Kif15 "Kinesin-like protein KIF15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS87 KIF15 "Kinesin-like protein KIF15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRA8 KIF15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L7Y8KN12B_ARATHNo assigned EC number0.61650.96200.9855yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140964
hypothetical protein (1289 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1345
PLN031881320 PLN03188, PLN03188, kinesin-12 family protein; Pro 0.0
pfam06548488 pfam06548, Kinesin-related, Kinesin-related 0.0
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 1e-160
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-148
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-138
cd00106328 cd00106, KISc, Kinesin motor domain 1e-125
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 1e-116
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 1e-113
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-107
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 1e-107
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 1e-106
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 1e-105
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 1e-101
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 8e-95
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 1e-77
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 4e-75
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 8e-71
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 4e-70
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 8e-67
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 4e-36
pfam1271186 pfam12711, Kinesin-relat_1, Kinesin motor 1e-30
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 5e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 4e-05
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 7e-05
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
pfam13514 1118 pfam13514, AAA_27, AAA domain 3e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.001
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.002
COG0711161 COG0711, AtpF, F0F1-type ATP synthase, subunit b [ 0.003
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.004
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information 
 Score = 2013 bits (5217), Expect = 0.0
 Identities = 988/1363 (72%), Positives = 1103/1363 (80%), Gaps = 61/1363 (4%)

Query: 1    MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKTL-RRQKSAKENAPPSDLNSL--- 56
            MKHFMLP++ +LRET      S    SPNP+S KSK   R+ KS+KENAPP DLNSL   
Sbjct: 1    MKHFMLPRNAILRET-----SSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSD 55

Query: 57   ---QPSPSPAKMKSPLPPRPP--NPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKE 111
                   + AK+KSPLPPRPP  NPLKRKL+ E+ PEN   GVSDSGVKVIVRM+PLNK 
Sbjct: 56   LKPDHRSASAKLKSPLPPRPPSSNPLKRKLSAETAPEN---GVSDSGVKVIVRMKPLNKG 112

Query: 112  ENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFA 171
            E EGEMIVQK+++DSL+ING TFTFDS+AD E+TQ D+FQLVG PLVENCL+GFNSSVFA
Sbjct: 113  E-EGEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFA 171

Query: 172  YGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCR 231
            YGQTGSGKTYTMWGPAN LLEE+LS DQQGLTPRVFERLF+RINEEQIKHAD+QL YQCR
Sbjct: 172  YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCR 231

Query: 232  CSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRR 291
            CSFLEIYNEQITDLLDPSQ+NLQIREDVKSGVYVENLTEEYV TMKDVTQLL+KGLSNRR
Sbjct: 232  CSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRR 291

Query: 292  TGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGER 351
            TGATSINAESSRSHSVFTCVVESRCKS ADG+S FK+SRINLVDLAGSERQKLTGAAG+R
Sbjct: 292  TGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDR 351

Query: 352  LKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAI 411
            LKEAGNIN+SLSQLGNLINILAE+SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM+CAI
Sbjct: 352  LKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAI 411

Query: 412  SPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHN 471
            SP+QSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVN+LREVIRQLRDEL R+KANG+N
Sbjct: 412  SPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNN 471

Query: 472  PTDPNGVHTAGW-ARRSLNLLKSF--HHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQ 528
            PT+PN  ++  W ARRSLNLLKSF    P +LPH+D+DGDEEMEIDE+AVE+LC  V  Q
Sbjct: 472  PTNPNVAYSTAWNARRSLNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVERLCVQVGLQ 531

Query: 529  LAGIEDHHEIKEGRVKTVKSESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVE 588
             AG  + + +  GRV+++ S  Q              SI +Q +EDTDV+MEE  SEQ E
Sbjct: 532  PAGAAEGNNVDMGRVESIHSSDQ-------------QSIIKQGSEDTDVDMEEAISEQEE 578

Query: 589  DLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQLIVSTVKRDSSRQLLEEKETF 648
              E  I+      +++  S                      + T+  +SS Q LEEK   
Sbjct: 579  KHEITIVDCAEPVRNTQNSL--------------------QIDTLDHESSEQPLEEKNAL 618

Query: 649  GSSVSELLDEESQRKAVGHESSGPVSDPLFGVLADVEYT--PNLSANSAVNCASPSSVSI 706
             SSVS+L  EES  K V    S   S    GV   V      N S N  VNCASPSS+SI
Sbjct: 619  HSSVSKLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESNDSENELVNCASPSSLSI 678

Query: 707  IQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTK 766
            +   VSPVLKSPT S+SPRI NSRKSLRTSSMLTASQKD +  SKL PE    S AKS K
Sbjct: 679  VPVEVSPVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMK 738

Query: 767  SSLADAPSIQMGKNVMTTTEHLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVL 826
            ++ + A S Q  K+ +  TEHLAASLHRGLEIIDSHRQSSA RRS+FR SF+PAD K + 
Sbjct: 739  NNSSSALSTQKSKSFLAPTEHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPIT 798

Query: 827  LVEKVNVGVQT-SLDDGISEEDLVSFLCNKCKNRAQLDIKEANENSRLQLVPVDGSESAD 885
            LV K +VGVQT    D ISEE+   FLC+ CK R QLD K+A+++S LQLVPVDGSESA+
Sbjct: 799  LVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDAKDADDSSNLQLVPVDGSESAE 858

Query: 886  KSKL-VPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTRE 944
            KSK  VPKAVEKVLAGAIRREMALEEFC KQASEI  LNRLVQQYKHERECN+II QTRE
Sbjct: 859  KSKKQVPKAVEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTRE 918

Query: 945  DKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEH 1004
            DKI+RLESLMDGVL  E+F++EE ASLMHEHKLLKEKYENHPEVL TKIELKRVQDELEH
Sbjct: 919  DKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIELKRVQDELEH 978

Query: 1005 YRNFYDLGEKEVLLEEVQDLRSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVP 1064
            YRNFYD+GE+EVLLEE+QDLRSQLQYYIDSS  SARK+ S  +LTYSCEPS  P L+T+P
Sbjct: 979  YRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIP 1038

Query: 1065 EPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASRSLAEKQKQELEAEKKCVEEL 1124
            E T E+ E+K EQER RWTE ES WISLAEELR EL+ASR+LAEKQK EL+ EK+C EEL
Sbjct: 1039 ESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEEL 1098

Query: 1125 HEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFIN 1184
             EAMQMAMEG+ARMLEQYADLEEKHIQLLARHR+IQEGI+DVKKAAA+AGVRGAESKFIN
Sbjct: 1099 KEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFIN 1158

Query: 1185 VLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARK 1244
             LAAEISALKV REKER+YLRDENK LQAQLRDTAEAVQAAGELLVRLKEAEEA+  A+K
Sbjct: 1159 ALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQK 1218

Query: 1245 RAMEAEQETVTAYKQIDQLKKKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEE 1304
            RAM+AEQE   AYKQID+LK+KHE E+STLN+++AESRLPKE IRPA +D  MAKYD   
Sbjct: 1219 RAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRLPKEAIRPACNDDCMAKYD-AG 1277

Query: 1305 EPHSAGDQQWREEFQQFYT-DDSEISKLAEPS-WFSGYDRCNI 1345
            EP S GDQQWREEF+ FY  +D E+SKLAEPS WFSGYDRCNI
Sbjct: 1278 EPLSEGDQQWREEFEPFYKKEDGELSKLAEPSSWFSGYDRCNI 1320

Length = 1320
>gnl|CDD|219083 pfam06548, Kinesin-related, Kinesin-related Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|193187 pfam12711, Kinesin-relat_1, Kinesin motor Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1345
PLN031881320 kinesin-12 family protein; Provisional 100.0
PF06548488 Kinesin-related: Kinesin-related; InterPro: IPR010 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG02451221 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0242675 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0247809 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0244913 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
PF1271186 Kinesin-relat_1: Kinesin motor; InterPro: IPR02465 99.83
PLN031881320 kinesin-12 family protein; Provisional 99.18
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 98.0
PRK02224 880 chromosome segregation protein; Provisional 97.09
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.05
PRK04863 1486 mukB cell division protein MukB; Provisional 96.84
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.67
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.19
KOG4673 961 consensus Transcription factor TMF, TATA element m 95.82
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.64
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.63
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.52
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.31
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.25
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.18
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.91
PRK02224880 chromosome segregation protein; Provisional 94.49
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 93.69
PHA02562562 46 endonuclease subunit; Provisional 93.65
PF00038312 Filament: Intermediate filament protein; InterPro: 93.52
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 93.17
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 92.34
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 92.19
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 91.75
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 91.61
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 91.56
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.19
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 91.13
COG0556663 UvrB Helicase subunit of the DNA excision repair c 90.84
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 90.64
PRK06893229 DNA replication initiation factor; Validated 90.44
KOG4302660 consensus Microtubule-associated protein essential 90.18
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 90.15
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 89.78
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 89.47
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 89.31
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 89.31
PRK09039343 hypothetical protein; Validated 89.13
KOG0996 1293 consensus Structural maintenance of chromosome pro 89.09
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 88.45
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 88.24
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 87.8
KOG06121317 consensus Rho-associated, coiled-coil containing p 87.61
PF14662193 CCDC155: Coiled-coil region of CCDC155 87.22
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 86.63
PF00038312 Filament: Intermediate filament protein; InterPro: 86.56
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 86.34
PRK11637 428 AmiB activator; Provisional 86.08
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 85.92
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 85.89
KOG0933 1174 consensus Structural maintenance of chromosome pro 85.87
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 85.32
PRK06620214 hypothetical protein; Validated 85.15
PRK09087226 hypothetical protein; Validated 84.76
PRK12377248 putative replication protein; Provisional 84.67
PRK05642234 DNA replication initiation factor; Validated 84.48
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 84.44
PRK03918880 chromosome segregation protein; Provisional 83.83
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 83.65
PHA02562562 46 endonuclease subunit; Provisional 83.43
PRK00411394 cdc6 cell division control protein 6; Reviewed 83.41
PRK14088440 dnaA chromosomal replication initiation protein; P 83.4
PRK08084235 DNA replication initiation factor; Provisional 83.4
PRK14086617 dnaA chromosomal replication initiation protein; P 83.32
PRK06526254 transposase; Provisional 83.15
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 82.97
TIGR02928365 orc1/cdc6 family replication initiation protein. M 82.69
PRK01156895 chromosome segregation protein; Provisional 82.27
PRK08116268 hypothetical protein; Validated 82.16
PRK14087450 dnaA chromosomal replication initiation protein; P 82.05
PF04851184 ResIII: Type III restriction enzyme, res subunit; 82.01
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 81.93
TIGR00362405 DnaA chromosomal replication initiator protein Dna 81.21
PRK06569155 F0F1 ATP synthase subunit B'; Validated 80.78
PRK07952244 DNA replication protein DnaC; Validated 80.72
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 80.33
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=0  Score=3198.17  Aligned_cols=1302  Identities=75%  Similarity=1.075  Sum_probs=1207.1

Q ss_pred             CCCCCCCcchhhcccccCCCCCCCCCCCCCCCCcchh-hhhccCcccCCCCCCCCCCC------CCCCCCCCCCCCCCCC
Q 000699            1 MKHFMLPKSTVLRETHTNDSPSSSSTSPNPNSSKSKT-LRRQKSAKENAPPSDLNSLQ------PSPSPAKMKSPLPPRP   73 (1345)
Q Consensus         1 ~~~~~~~~~~~~r~~~~~~~~~sss~s~~~~~~~s~~-~rk~~~~~en~~ps~~~s~~------p~~s~a~~~s~~pp~p   73 (1345)
                      |||||+|||+|+|++.+.     ..+||+|+++++++ .||+++++||+||+++|++.      ++|.|+..++|.||+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~-----~~~~p~p~~~~~~~~~~~~~~~~e~~~p~~~n~~~~~~~~~~~~~~~~~~sp~p~~p   75 (1320)
T PLN03188          1 MKHFMLPRNAILRETSSG-----EEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAKLKSPLPPRP   75 (1320)
T ss_pred             CcccccchhHHhhhcccC-----CCCCCCcccccCCcchhhhccccccCCCCCcccccccccccCCCccccccCCCCCCC
Confidence            999999999999999544     44788888888876 47999999999999999654      2445577888888888


Q ss_pred             C--ChhhhhccccCCCCCCCCCCCCCCcEEEEEeCCCCccccCCCcEEEEeCCCeeEEcCeeEEeceecCCCCChhHHHH
Q 000699           74 P--NPLKRKLAMESFPENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQ  151 (1345)
Q Consensus        74 P--~p~~r~l~~~s~p~~~~~~~~~~~VkVvVRVRPl~~~E~~g~~iV~~~s~~si~v~~ktFtFD~VFd~~aSQedVFe  151 (1345)
                      |  +|++|++.....+++   +.++.+|+|||||||++..| .+..++....++.+.++++.|+||+||+++++|++||+
T Consensus        76 p~s~~l~rk~~~~~~~en---~~~ds~VkV~VRVRPl~~~E-~g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe  151 (1320)
T PLN03188         76 PSSNPLKRKLSAETAPEN---GVSDSGVKVIVRMKPLNKGE-EGEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQ  151 (1320)
T ss_pred             CCCcchhccccccccccc---cCCCCCeEEEEEcCCCCCcc-CCCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHH
Confidence            8  477788776655443   44678999999999999886 45567777888899999999999999999999999999


Q ss_pred             hhchhhHHHHhcCCcccEeecCCCCCCcceeecCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHhhhcccceeEEE
Q 000699          152 LVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCR  231 (1345)
Q Consensus       152 ~vv~PLVdsvLeGyNaTIfAYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRal~dLFs~I~eeq~k~~~~~~~ysV~  231 (1345)
                      .++.|||+++|+|||+||||||||||||||||+|+.++..+.......+|||||++++||..|...+.+..+....|.|+
T Consensus       152 ~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~  231 (1320)
T PLN03188        152 LVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCR  231 (1320)
T ss_pred             HHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEE
Confidence            99999999999999999999999999999999998765555555677899999999999999987766666677899999


Q ss_pred             EEEEEEecceeeecCCCCCCCcceeecCCCCeEEcCcEEEEecCHHHHHHHHHHHhhccccccCCCCCCCCCceEEEEEE
Q 000699          232 CSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCV  311 (1345)
Q Consensus       232 VSflEIYNEkV~DLL~p~~~~L~IrED~~~gv~V~GLtev~V~S~eE~l~LL~~G~knR~tasT~mN~~SSRSHaIFtI~  311 (1345)
                      |||||||||+|||||++....+.|++|+.+|+||.||+++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+
T Consensus       232 vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~  311 (1320)
T PLN03188        232 CSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV  311 (1320)
T ss_pred             EEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeccCCCCCceeeEEEEEEEeCCCCccccccCcchhhhHHHhhhhhchHHHHHHHHHHHHhhcCCCCCCccCCCCcc
Q 000699          312 VESRCKSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRL  391 (1345)
Q Consensus       312 Ve~~~~~~~dg~~~~k~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~s~k~~hIPYRDSKL  391 (1345)
                      |.+......+|...++.|+|+|||||||||.+.+++.|.+++|+++||+||++||+||++|++.++.++..|||||||||
T Consensus       312 Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL  391 (1320)
T PLN03188        312 VESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL  391 (1320)
T ss_pred             EEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence            99876655566667788999999999999999999999999999999999999999999999877677889999999999


Q ss_pred             ccccccccCCCcceeEEEecCCCCCchHHHHHHHHHHHHHhcccccceecccchhhHHHHHHHHHHHHHHHHHHHhCCCC
Q 000699          392 TFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDELHRMKANGHN  471 (1345)
Q Consensus       392 TrLLQDSLGGNSKT~mIa~ISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~~~v~~Lr~~Ir~Lr~EL~~LK~~~~~  471 (1345)
                      |+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|++|+...++++.|+++|++|++||.+||..+.+
T Consensus       392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~  471 (1320)
T PLN03188        392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNN  471 (1320)
T ss_pred             HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccchhh-hHHhhhhhhcc--CCCCCCCCCCCCcchhhhccHHHHHHHHHHHHhhhcCccccccccccccccccc
Q 000699          472 PTDPNGVHTAGW-ARRSLNLLKSF--HHPMTLPHIDDDGDEEMEIDEDAVEKLCNHVDKQLAGIEDHHEIKEGRVKTVKS  548 (1345)
Q Consensus       472 ~~~~~~~~~~~~-~~~sl~~l~~~--~~~~~l~~~~~~~~ee~~i~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (1345)
                      |.+.++.|+++| ++++|++|+.+  +|+..||++++|+|++|+|||++++++|.++..-....+.+.........+.+.
T Consensus       472 p~~~n~~y~t~~~~r~sl~~l~~~~l~~~~~lp~i~~d~~~~m~ide~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (1320)
T PLN03188        472 PTNPNVAYSTAWNARRSLNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVERLCVQVGLQPAGAAEGNNVDMGRVESIHS  551 (1320)
T ss_pred             CCCCCcccccchhHHHHHHHHHhccCCCCcCCCccccccchhhhcchhHHHHHHHHhcccchhHHHHHHHhhhccccccc
Confidence            999999999999 99999999873  999999999999999999999999998766543322222111111111111110


Q ss_pred             ccccccccccchhhcchhhhhcccccccccccchhhhhhhcccchhccccccccCCCCCccccccccccccCCccccchh
Q 000699          549 ESQFAVSGETQLNTLAGSIKEQCAEDTDVNMEEVTSEQVEDLESEIITVEPVTKSSDYSDDIVLNHNIKDQNGEENTNQL  628 (1345)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (1345)
                             .+      .-.|.+...++++|.|+..++++++.+..++.+|..++++.+++..                   
T Consensus       552 -------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  599 (1320)
T PLN03188        552 -------SD------QQSIIKQGSEDTDVDMEEAISEQEEKHEITIVDCAEPVRNTQNSLQ-------------------  599 (1320)
T ss_pred             -------cc------chhhhcccccccchhhhhhhcccccccccccccccccccccccccc-------------------
Confidence                   00      0123355678899999999999999999999999999888776543                   


Q ss_pred             hhhhccccchhhhhhhhhccCCcccchhhhhhhhhhcCCCCCCCCCCCCcccc--cccccCCCCCcccccccCCCCccee
Q 000699          629 IVSTVKRDSSRQLLEEKETFGSSVSELLDEESQRKAVGHESSGPVSDPLFGVL--ADVEYTPNLSANSAVNCASPSSVSI  706 (1345)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~si  706 (1345)
                       +++..+.+...+.+++.+++++++.++++..+++++....+|..++...|.+  .-+.+.+|+.++.+++++++++|||
T Consensus       600 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsi  678 (1320)
T PLN03188        600 -IDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESGVSTGVSVADESNDSENELVNCASPSSLSI  678 (1320)
T ss_pred             -ccccccccccccccccccccccccccccccccccccccCCccccccccccccccccccccccccccccccCCCcccccc
Confidence             5567778888899999999999999999999999999999999777644332  2377888999999999999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccccccccccccccccccccccccCCCCChhhhhhhhhhcccccCCCcccccccCCcCCchh
Q 000699          707 IQSNVSPVLKSPTPSISPRISNSRKSLRTSSMLTASQKDLKVGSKLDPEAIHLSLAKSTKSSLADAPSIQMGKNVMTTTE  786 (1345)
Q Consensus       707 ~~~~~s~~l~~p~~s~sp~~~~~rks~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  786 (1345)
                      +||++||+|++||+|+||||+|+|||+++|+++++|++|+...+.+.+...+.+++++++.+++.++|+|++|+|++||+
T Consensus       679 ~p~~~~~~l~~p~~s~sp~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~t~  758 (1320)
T PLN03188        679 VPVEVSPVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKSKSFLAPTE  758 (1320)
T ss_pred             ccccccccccCCccccCCCcccchhhhhhhcccccccchhcccccccccccccchhhhhhcccccccccccccccCCchH
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             hHHHHhhhccccccccccCcccccccccccccccccchhhhhhhcccccccccCCCCCccc-chhhhchhhhhhhhhhhh
Q 000699          787 HLAASLHRGLEIIDSHRQSSAFRRSAFRLSFRPADLKQVLLVEKVNVGVQTSLDDGISEED-LVSFLCNKCKNRAQLDIK  865 (1345)
Q Consensus       787 ~laasl~rgl~iid~h~~~~a~~~s~~~~s~~~~~~~~~~~~~k~~~~~q~~~~~~~~~~~-~~~~lc~~c~~~~~~~~~  865 (1345)
                      ||||||||||+||||||+|+|||||||||||+|++++||..|+||||||||+|++.+..++ +..|||++||.+++++++
T Consensus       759 ~laasl~rgl~ii~~h~~~~~~~rss~~~s~~~~~~~~~~~~~k~~~~vq~~~~~~~~~~~~~~~~lc~~c~~~~~~~~~  838 (1320)
T PLN03188        759 HLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDAK  838 (1320)
T ss_pred             HHHHHHhcchHHHhhcccCchhhccceecccccccccccccccccchhhhcccccccccccccchhcccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999998665554 899999999999999999


Q ss_pred             hhhccccccccccCCCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhH
Q 000699          866 EANENSRLQLVPVDGSESADKSK-LVPKAVEKVLAGAIRREMALEEFCAKQASEIKHLNRLVQQYKHERECNSIISQTRE  944 (1345)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~e~vlaga~rrE~~le~~c~~qaa~I~qLn~Lv~q~k~~~e~~~~~~~~re  944 (1345)
                      ++++++++|+||+||+++++++| ||||+|||||||||||||+||+||+|||+||+||||||||||||||||+||+||||
T Consensus       839 ~~~~~~~~~~v~~~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~  918 (1320)
T PLN03188        839 DADDSSNLQLVPVDGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTRE  918 (1320)
T ss_pred             cccccccceeeeccCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhh
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCchhhhhHHHHhhHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHhhhhhcCchhHHHHHHHHHHH
Q 000699          945 DKILRLESLMDGVLPTEEFMDEEFASLMHEHKLLKEKYENHPEVLGTKIELKRVQDELEHYRNFYDLGEKEVLLEEVQDL 1024 (1345)
Q Consensus       945 ~ki~rlesl~dg~l~~~~~~~ee~~~l~~e~k~l~~~~~~~pev~~~~~E~k~vqeel~~~~~~~d~~ErE~Ll~EI~~L 1024 (1345)
                      |||+|||+||||+||+++||+||+++||||||+||+||+||||||+++||||||||||++|+||||+|||||||+|||+|
T Consensus       919 ~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dl  998 (1320)
T PLN03188        919 DKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDL  998 (1320)
T ss_pred             hhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCcchhhccCCCccccccCCCCCCCCCCCCCCCCcCchhHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Q 000699         1025 RSQLQYYIDSSSSSARKQKSFPQLTYSCEPSLVPSLSTVPEPTKETAEEKFEQERTRWTEVESGWISLAEELRNELEASR 1104 (1345)
Q Consensus      1025 r~ql~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~le~er~~wte~eS~wIslteeLR~eLe~~r 1104 (1345)
                      |+|||||+|+|.+++++++++++|+|.|.|++.|++++|+++++++.+++||+||+|||||||+||+||||||+|||++|
T Consensus       999 r~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r 1078 (1320)
T PLN03188        999 RSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASR 1078 (1320)
T ss_pred             HHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCchhhHHH
Q 000699         1105 SLAEKQKQELEAEKKCVEELHEAMQMAMEGNARMLEQYADLEEKHIQLLARHRKIQEGIEDVKKAAAKAGVRGAESKFIN 1184 (1345)
Q Consensus      1105 ~~aek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~ek~~~l~~~hr~i~~gi~~vk~aaakag~kg~~~~f~~ 1184 (1345)
                      +||||+++||+.||+|+|||+|||||||+||||||||||||||||||||+|||+|||||+|||||||||||||||+||||
T Consensus      1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188       1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhchHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000699         1185 VLAAEISALKVAREKERQYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEAVAAARKRAMEAEQETVTAYKQIDQLK 1264 (1345)
Q Consensus      1185 ~laae~s~lr~ereker~~l~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk 1264 (1345)
                      |||||||||||||||||+|||||||+||+|||||||||||||||||||||||||+++||+|||+|||||+||||||||||
T Consensus      1159 alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188       1159 ALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHhhcCCCcccCCccccCCcccccCCCCCCCCCchHHHHHHHhhhccCch-hhhcccCCC-CcccCcc
Q 000699         1265 KKHEMEVSTLNEIIAESRLPKETIRPAFDDSSMAKYDVEEEPHSAGDQQWREEFQQFYTDDS-EISKLAEPS-WFSGYDR 1342 (1345)
Q Consensus      1265 ~kh~~e~~t~~~~laes~lp~~~~~~~~~~~~~~~~~~~~~~~~~~dq~wr~ef~~~~~~~~-~~~~~~~~~-~~~~~~~ 1342 (1345)
                      |||+|||+||||||||||||+++|+|+|+++.|++|| ++++.++|||+||+||+|||+.++ |+||+|||| |||||||
T Consensus      1239 rkh~~e~~t~~q~~aes~l~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~wr~ef~~~y~~~~~~~s~~~~~~~wf~gyd~ 1317 (1320)
T PLN03188       1239 RKHENEISTLNQLVAESRLPKEAIRPACNDDCMAKYD-AGEPLSEGDQQWREEFEPFYKKEDGELSKLAEPSSWFSGYDR 1317 (1320)
T ss_pred             HHHHHHHHHHHHHHhhccCChhhcCcccccccccccc-ccCCCCcchHHHHHHHhhhhcccchhhhcccCcchhhccCcc
Confidence            9999999999999999999999999999999999999 566779999999999999999755 999999998 9999999


Q ss_pred             CCC
Q 000699         1343 CNI 1345 (1345)
Q Consensus      1343 ~~~ 1345 (1345)
                      |||
T Consensus      1318 cni 1320 (1320)
T PLN03188       1318 CNI 1320 (1320)
T ss_pred             cCC
Confidence            998

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants Back     alignment and domain information
>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1345
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 7e-74
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 5e-73
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 1e-67
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 4e-67
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 8e-67
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 9e-67
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 9e-67
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 1e-66
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 2e-66
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 7e-66
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 8e-66
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 1e-62
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 3e-62
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 5e-61
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 2e-60
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 2e-60
4a28_A368 Eg5-2 Length = 368 2e-60
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 2e-60
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 3e-60
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 3e-60
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 3e-60
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 3e-60
4a1z_A368 Eg5-1 Length = 368 2e-59
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 3e-59
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 4e-59
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 3e-58
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 2e-56
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 6e-56
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 5e-55
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 7e-54
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 1e-53
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 6e-53
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 6e-52
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 1e-51
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 1e-51
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 2e-51
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 4e-51
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 5e-51
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 5e-51
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 6e-51
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 2e-50
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 3e-50
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 4e-50
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 1e-49
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 7e-48
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 2e-46
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 9e-43
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 2e-40
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 7e-39
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 7e-39
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 5e-38
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 2e-37
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 2e-37
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 2e-36
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 9e-32
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 9e-30
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 2e-17
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 5e-17
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  276 bits (705), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 165/382 (43%), Positives = 225/382 (58%), Gaps = 39/382 (10%)
Query: 88  ENLVPGVSDSGVKVIVRMRPLNKEENEGEMIVQKVADDSLSIN----------GH----T 133
           ENL    S   V+V+VR RP+N +E        KV D  + +            H    T
Sbjct: 12  ENLYFQGSSESVRVVVRCRPMNGKEKAASY--DKVVDVDVKLGQVSVKNPKGTAHEMPKT 69
Query: 134 FTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEE 193
           FTFD+V D  A Q +++     PLV++ L GFN ++FAYGQTG+GKTYTM G        
Sbjct: 70  FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG----- 124
Query: 194 NLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ-RN 252
               +++G+ P  F+ +F+ I+  Q +       Y  R S+LEIY E+I DLL   Q + 
Sbjct: 125 --DPEKRGVIPNSFDHIFTHISRSQNQQ------YLVRASYLEIYQEEIRDLLSKDQTKR 176
Query: 253 LQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVV 312
           L+++E   +GVYV++L+     ++K++  ++  G  NR  GAT++N  SSRSH++F   +
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 313 ESRCKSKA-DGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINI 371
           E  C     DG +  +  ++NLVDLAGSERQ  TGA GERLKEA  IN SLS LGN+I+ 
Sbjct: 237 E--CSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISA 294
Query: 372 LAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRA 431
           L +    GK  HIPYRDS+LT LLQ+SLGGNAK  M+  + PA     ET +TLR+A RA
Sbjct: 295 LVD----GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRA 350
Query: 432 KAIKNKAVVNEVMQDDVNYLRE 453
           K IKNK  VNE  +D +  LRE
Sbjct: 351 KNIKNKPRVNEDPKDAL--LRE 370
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1345
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 1e-168
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-168
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-167
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-164
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-164
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 1e-162
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-161
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-159
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-158
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 1e-157
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-157
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 1e-154
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 1e-154
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-150
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-148
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-143
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-140
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-139
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-138
3u06_A412 Protein claret segregational; motor domain, stalk 1e-135
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-135
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-134
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 1e-133
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 1e-132
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-131
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 1e-129
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 7e-42
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 3e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 6e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 6e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-06
3iyk_A 526 VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu 8e-04
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
 Score =  505 bits (1304), Expect = e-168
 Identities = 147/377 (38%), Positives = 214/377 (56%), Gaps = 37/377 (9%)

Query: 95  SDSGVKVIVRMRPLN-KEENEGEMIVQKVADDSLSI--------NGHTFTFDSVADME-- 143
           + + VKV VR+RP N +E +     + +++  + +I           +F+FD        
Sbjct: 2   AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61

Query: 144 ------ATQLDVFQLVGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSS 197
                 A+Q  V++ +G  ++++   G+N  +FAYGQTG+GK+YTM G            
Sbjct: 62  PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--------K 113

Query: 198 DQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQR-NLQIR 256
           DQQG+ P++ E LFSRIN+      +  ++Y    S++EIY E++ DLL+P  + NL++R
Sbjct: 114 DQQGIIPQLCEDLFSRINDTT----NDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVR 169

Query: 257 EDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRC 316
           E    G YVE+L++  V +  D+  L+  G   R   AT++N  SSRSH+VF  +   + 
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR 229

Query: 317 KSKADGISRFKSSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVS 376
                 I+  K S+I+LVDLAGSER   TGA G RLKE  NINKSL+ LG +I+ LAE+ 
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 289

Query: 377 Q-------TGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQ 429
                     K   IPYRDS LT+LL+E+LGGN++ AM+ A+SPA     ET STLR+A 
Sbjct: 290 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 349

Query: 430 RAKAIKNKAVVNEVMQD 446
           RAK I+N   VN     
Sbjct: 350 RAKQIRNTVSVNHHHHH 366
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1345
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 4e-86
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 7e-85
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 2e-81
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 3e-79
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 5e-75
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 9e-73
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 1e-72
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 1e-69
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-64
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  281 bits (719), Expect = 4e-86
 Identities = 132/342 (38%), Positives = 194/342 (56%), Gaps = 23/342 (6%)

Query: 95  SDSGVKVIVRMRPLNKEENE--GEMIVQKVADDSLSINGHTFTFDSVADMEATQLDVFQL 152
           ++  +KV+ R RPLN+ E     + I +   +D++ I    + FD V     +Q  V+  
Sbjct: 3   AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYND 62

Query: 153 VGVPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFS 212
               +V++ L G+N ++FAYGQT SGKT+TM G  +         +  G+ PR+ + +F+
Sbjct: 63  CAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH-------DPEGMGIIPRIVQDIFN 115

Query: 213 RINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEY 272
            I        D+ L +  + S+ EIY ++I DLLD S+ NL + ED     YV+  TE +
Sbjct: 116 YIY-----SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERF 170

Query: 273 VCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFKSSRIN 332
           VC+  +V   + +G SNR    T++N  SSRSHS+F   V+           +  S ++ 
Sbjct: 171 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKLSGKLY 226

Query: 333 LVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLT 392
           LVDLAGSE+   TGA G  L EA NINKSLS LGN+I+ LAE        ++PYRDS++T
Sbjct: 227 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE-----GSTYVPYRDSKMT 281

Query: 393 FLLQESLGGNAKLAMICAISPAQSCKSETFSTLRFAQRAKAI 434
            +LQ+SLGGN +  ++   SP+   +SET STL F QRAK I
Sbjct: 282 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1345
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.15
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 91.05
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 87.43
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 81.86
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 81.1
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=0  Score=655.22  Aligned_cols=339  Identities=37%  Similarity=0.619  Sum_probs=297.7

Q ss_pred             CCEEEEEECCCCCCCC--CCCCEEEEECCCEEEE-----CCEEEEECEECCCCCCHHHHHHHHCHHHHHHHHCCCCCCEE
Q ss_conf             9289998399995435--8981899907991678-----67568803231999983688973233469987517763176
Q 000699           98 GVKVIVRMRPLNKEEN--EGEMIVQKVADDSLSI-----NGHTFTFDSVADMEATQLDVFQLVGVPLVENCLSGFNSSVF  170 (1345)
Q Consensus        98 ~VkVvVRVRPl~~~E~--~~~~~V~~~s~~si~v-----~~k~FtFD~VFd~~asQeeVYe~vv~PLVdsvLeGyNaTIf  170 (1345)
                      +|+|+|||||+...|.  ....++....+.++..     ..+.|+||+||+++++|++||+.+ .|+|+++|+|||+|||
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~   79 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF   79 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEE
T ss_pred             CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHH-HHHHHHHHCCCCEEEE
T ss_conf             969999927899366225898759967997587357899854777885649999989999989-9999999669850355


Q ss_pred             ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEECCCCCC
Q ss_conf             32788888221312899874222458788897189999999999999986303552068999788775240341578877
Q 000699          171 AYGQTGSGKTYTMWGPANALLEENLSSDQQGLTPRVFERLFSRINEEQIKHADKQLNYQCRCSFLEIYNEQITDLLDPSQ  250 (1345)
Q Consensus       171 AYGQTGSGKTYTM~G~~~~~~~~~~s~~~~GIIPRaledLFs~I~~~q~k~~~~~~~fsV~VSflEIYNEkI~DLL~p~~  250 (1345)
                      |||||||||||||+|+          ..++||+||++.+||..+...     .....|.|++||+|||||+|+|||.+..
T Consensus        80 aYGqTGSGKTyTm~G~----------~~~~Giipr~~~~lf~~i~~~-----~~~~~~~v~~S~~EIyne~i~DLL~~~~  144 (364)
T d1sdma_          80 AYGQTGSGKTFTIYGA----------DSNPGLTPRAMSELFRIMKKD-----SNKFSFSLKAYMVELYQDTLVDLLLPKQ  144 (364)
T ss_dssp             EECSTTSSHHHHHTBC----------SSSBCHHHHHHHHHHHHHHHG-----GGTEEEEEEEEEEEESSSCEEETTSCTT
T ss_pred             CCCCCCCCCCCCCCCC----------CCCCCHHHHHHHHHHHHHHHC-----CCCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf             2234787762016567----------665513678999988655310-----3465536999988872363223357654


Q ss_pred             ---CCCCEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEE
Q ss_conf             ---87530003799869758389996399999999998761165445788888988568999999953135789974045
Q 000699          251 ---RNLQIREDVKSGVYVENLTEEYVCTMKDVTQLLMKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSKADGISRFK  327 (1345)
Q Consensus       251 ---~~L~IrED~~~gv~V~GLtev~V~S~eEvl~LL~~G~knR~tasT~mN~~SSRSHaIFTI~Ie~~~~~~~dg~~~~k  327 (1345)
                         ..+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||++.+.+....    .....
T Consensus       145 ~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~----~~~~~  220 (364)
T d1sdma_         145 AKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIA  220 (364)
T ss_dssp             SCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT----TCCEE
T ss_pred             CCCCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCC----CCEEE
T ss_conf             55544331331467602035300011778897898640660004453435410333635999999970367----65035


Q ss_pred             EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             88799984799864122275024468875431006778999999998601799987447898543211023688753149
Q 000699          328 SSRINLVDLAGSERQKLTGAAGERLKEAGNINKSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM  407 (1345)
Q Consensus       328 ~SKL~LVDLAGSER~~kTga~G~RlkEa~~INkSLsaLG~VI~ALae~s~~~k~~hIPYRDSKLTrLLQDSLGGNSKT~M  407 (1345)
                      .|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|++     +..|||||+||||+||+|+|||||+|+|
T Consensus       221 ~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~-----~~~~ipyR~SkLT~lL~d~Lggns~t~~  295 (364)
T d1sdma_         221 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-----GNQHIPYRNHKLTMLMSDSLGGNAKTLM  295 (364)
T ss_dssp             EEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHH-----TCSCCCGGGCHHHHHTTTTTTSSSEEEE
T ss_pred             EEEEEEECHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHC-----CCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             67998404100352001466675023323356432068999999974-----9975773011213887863499950999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9840899776589899999999972152441443321155999999999999999
Q 000699          408 ICAISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNYLREVIRQLRDEL  462 (1345)
Q Consensus       408 IatISPs~~~~eETLSTLrFAsRAK~IKNkpvVNe~~~d~v~~Lk~~IrqLk~EL  462 (1345)
                      ||||||+..+++||++||+||+|||.|+|+|.+|+... .+..|+++|..|+.++
T Consensus       296 I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~-~~~~l~~~i~~l~~~~  349 (364)
T d1sdma_         296 FVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK-EVARLKKLVSYWKEQA  349 (364)
T ss_dssp             EEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECH-HHHHHHTTTTCC----
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHHHHHHHHHHHH
T ss_conf             99969870018999999999999842066783557989-9999999999999998
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure